Metagenome / Metatranscriptome Family F093829

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093829
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	60 residues
Representative Sequence	AAADAAARAALHTLNVPGRQRHSKRAQKARPKFPHATATKTTITGKPQVTVFAPGFG
Number of Associated Samples	90
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	97.17 %
% of genes from short scaffolds (< 2000 bps)	89.62 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (61.321 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (24.528 % of family members)
Environment Ontology (ENVO)	Unclassified (33.019 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.057 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.82% β-sheet: 4.71% Coil/Unstructured: 76.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF14329	DUF4386	1.89
PF13359	DDE_Tnp_4	1.89
PF07685	GATase_3	0.94
PF13185	GAF_2	0.94
PF13407	Peripla_BP_4	0.94
PF01527	HTH_Tnp_1	0.94
PF01625	PMSR	0.94
PF13700	DUF4158	0.94
PF13546	DDE_5	0.94
PF13613	HTH_Tnp_4	0.94
PF01381	HTH_3	0.94
PF05988	DUF899	0.94
PF13692	Glyco_trans_1_4	0.94
PF00144	Beta-lactamase	0.94
PF00872	Transposase_mut	0.94
PF04972	BON	0.94
PF08003	Methyltransf_9	0.94
PF03621	MbtH	0.94
PF04075	F420H2_quin_red	0.94
PF08281	Sigma70_r4_2	0.94
PF00583	Acetyltransf_1	0.94
PF07728	AAA_5	0.94
PF04984	Phage_sheath_1	0.94
PF00072	Response_reg	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.94
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.94
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.94
COG3251	MbtH family protein, regulates adenylation domains of NRPSs	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.94
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.94
COG3497	Phage tail sheath protein FI	Mobilome: prophages, transposons [X]	0.94
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
All Organisms	root	All Organisms	38.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
cellular organisms	root	All Organisms → cellular organisms	38.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	35.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	30.19 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	27.36 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	3.77 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.89 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.89 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.94 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	1.89 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	1.89 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.94 %
Propionibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	1.89 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.89 %
Microlunatus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus	0.94 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.94 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.89 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.89 %
Microlunatus elymi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus elymi	0.94 %
unclassified Amycolatopsis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis	0.94 %
unclassified Pseudonocardia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia	0.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.89 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.89 %
Amycolatopsis sp. CA-126428	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. CA-126428	0.94 %
Pseudonocardia sp. ICBG601	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. ICBG601	0.94 %
Microlunatus elymi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus elymi	0.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573002\|GZIGXIF02H9N09	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	544	Open in IMG/M
3300000567\|JGI12270J11330_10004968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9380	Open in IMG/M
3300000955\|JGI1027J12803_104243688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	833	Open in IMG/M
3300005329\|Ga0070683_101412107	Not Available	669	Open in IMG/M
3300005447\|Ga0066689_10656047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	659	Open in IMG/M
3300005554\|Ga0066661_10801844	Not Available	551	Open in IMG/M
3300005561\|Ga0066699_10976931	Not Available	587	Open in IMG/M
3300005995\|Ga0066790_10012856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3699	Open in IMG/M
3300006034\|Ga0066656_10924042	Not Available	559	Open in IMG/M
3300006162\|Ga0075030_101611258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	508	Open in IMG/M
3300006573\|Ga0074055_11440278	Not Available	511	Open in IMG/M
3300006576\|Ga0074047_12049081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	986	Open in IMG/M
3300006796\|Ga0066665_11216681	Not Available	575	Open in IMG/M
3300006953\|Ga0074063_11888615	Not Available	554	Open in IMG/M
3300007788\|Ga0099795_10469860	Not Available	582	Open in IMG/M
3300009029\|Ga0066793_10577805	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300009029\|Ga0066793_10774217	Not Available	545	Open in IMG/M
3300009038\|Ga0099829_11740315	Not Available	511	Open in IMG/M
3300009143\|Ga0099792_10387539	Not Available	852	Open in IMG/M
3300009520\|Ga0116214_1001919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7893	Open in IMG/M
3300009520\|Ga0116214_1007430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3907	Open in IMG/M
3300009521\|Ga0116222_1511878	Not Available	526	Open in IMG/M
3300009523\|Ga0116221_1049061	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1977	Open in IMG/M
3300009523\|Ga0116221_1396166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	601	Open in IMG/M
3300009525\|Ga0116220_10577795	Not Available	515	Open in IMG/M
3300009698\|Ga0116216_10595787	Not Available	666	Open in IMG/M
3300009792\|Ga0126374_10455199	Not Available	910	Open in IMG/M
3300009824\|Ga0116219_10544605	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300009826\|Ga0123355_12179871	Not Available	507	Open in IMG/M
3300010046\|Ga0126384_11054836	Not Available	743	Open in IMG/M
3300010329\|Ga0134111_10340496	Not Available	632	Open in IMG/M
3300010379\|Ga0136449_100124281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. ICBG601	5168	Open in IMG/M
3300010379\|Ga0136449_100578883	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1921	Open in IMG/M
3300010379\|Ga0136449_102338069	Not Available	773	Open in IMG/M
3300010379\|Ga0136449_104031287	Not Available	548	Open in IMG/M
3300010868\|Ga0124844_1054372	Not Available	1420	Open in IMG/M
3300011080\|Ga0138568_1106794	Not Available	640	Open in IMG/M
3300011088\|Ga0138576_1154828	Not Available	710	Open in IMG/M
3300011269\|Ga0137392_11221433	Not Available	610	Open in IMG/M
3300011271\|Ga0137393_10640073	Not Available	911	Open in IMG/M
3300012096\|Ga0137389_10312666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1331	Open in IMG/M
3300012096\|Ga0137389_10400978	Not Available	1171	Open in IMG/M
3300012096\|Ga0137389_11807991	Not Available	507	Open in IMG/M
3300012199\|Ga0137383_10877588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. CA-126428	655	Open in IMG/M
3300012202\|Ga0137363_10294484	Not Available	1331	Open in IMG/M
3300012209\|Ga0137379_11760126	Not Available	515	Open in IMG/M
3300012210\|Ga0137378_10564118	Not Available	1047	Open in IMG/M
3300012211\|Ga0137377_11858451	Not Available	520	Open in IMG/M
3300012351\|Ga0137386_10442997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	936	Open in IMG/M
3300012354\|Ga0137366_10288201	Not Available	1211	Open in IMG/M
3300012359\|Ga0137385_10505033	Not Available	1023	Open in IMG/M
3300012359\|Ga0137385_10743675	Not Available	817	Open in IMG/M
3300012359\|Ga0137385_11667247	Not Available	501	Open in IMG/M
3300012362\|Ga0137361_11747287	Not Available	541	Open in IMG/M
3300012918\|Ga0137396_10415990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	997	Open in IMG/M
3300012925\|Ga0137419_10585483	Not Available	895	Open in IMG/M
3300012944\|Ga0137410_11847825	Not Available	534	Open in IMG/M
3300012948\|Ga0126375_10545606	Not Available	874	Open in IMG/M
3300014157\|Ga0134078_10125102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	987	Open in IMG/M
3300014499\|Ga0182012_11062028	Not Available	507	Open in IMG/M
3300014501\|Ga0182024_12176926	Not Available	607	Open in IMG/M
3300015264\|Ga0137403_11526585	Not Available	519	Open in IMG/M
3300016294\|Ga0182041_12212091	All Organisms → cellular organisms → Bacteria → Terrabacteria group	514	Open in IMG/M
3300016422\|Ga0182039_10712459	Not Available	885	Open in IMG/M
3300017928\|Ga0187806_1310865	Not Available	557	Open in IMG/M
3300017928\|Ga0187806_1323611	Not Available	548	Open in IMG/M
3300017948\|Ga0187847_10374488	Not Available	781	Open in IMG/M
3300017972\|Ga0187781_11224515	All Organisms → cellular organisms → Bacteria → Terrabacteria group	553	Open in IMG/M
3300018086\|Ga0187769_11495252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	511	Open in IMG/M
3300021372\|Ga0213877_10365606	Not Available	500	Open in IMG/M
3300021860\|Ga0213851_1315489	Not Available	509	Open in IMG/M
3300024288\|Ga0179589_10552257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	537	Open in IMG/M
3300025527\|Ga0208714_1070892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	721	Open in IMG/M
3300026557\|Ga0179587_10804863	Not Available	620	Open in IMG/M
3300026557\|Ga0179587_11143297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	512	Open in IMG/M
3300027497\|Ga0208199_1002740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5141	Open in IMG/M
3300027625\|Ga0208044_1192152	Not Available	549	Open in IMG/M
3300027667\|Ga0209009_1160181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	572	Open in IMG/M
3300027703\|Ga0207862_1066925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1081	Open in IMG/M
3300030020\|Ga0311344_11407488	Not Available	511	Open in IMG/M
3300030057\|Ga0302176_10240597	Not Available	724	Open in IMG/M
3300030659\|Ga0316363_10031685	All Organisms → cellular organisms → Bacteria	2693	Open in IMG/M
3300030706\|Ga0310039_10026142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2753	Open in IMG/M
3300031028\|Ga0302180_10111535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1554	Open in IMG/M
3300031231\|Ga0170824_105983347	Not Available	563	Open in IMG/M
3300031544\|Ga0318534_10208446	Not Available	1128	Open in IMG/M
3300031744\|Ga0306918_11033854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	638	Open in IMG/M
3300031751\|Ga0318494_10141818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1349	Open in IMG/M
3300031751\|Ga0318494_10624832	Not Available	630	Open in IMG/M
3300031846\|Ga0318512_10382280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	706	Open in IMG/M
3300031941\|Ga0310912_10760104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus elymi	750	Open in IMG/M
3300032001\|Ga0306922_11328778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	726	Open in IMG/M
3300032055\|Ga0318575_10596326	Not Available	560	Open in IMG/M
3300032060\|Ga0318505_10575286	Not Available	530	Open in IMG/M
3300032160\|Ga0311301_11747390	Not Available	745	Open in IMG/M
3300032160\|Ga0311301_12801661	Not Available	532	Open in IMG/M
3300032515\|Ga0348332_11318464	Not Available	856	Open in IMG/M
3300032828\|Ga0335080_10022094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6883	Open in IMG/M
3300032892\|Ga0335081_10176504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3001	Open in IMG/M
3300032896\|Ga0335075_10327593	Not Available	1687	Open in IMG/M
3300032954\|Ga0335083_10810183	Not Available	750	Open in IMG/M
3300032954\|Ga0335083_10945017	Not Available	682	Open in IMG/M
3300033134\|Ga0335073_11149824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	785	Open in IMG/M
3300033818\|Ga0334804_000002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	143828	Open in IMG/M
3300033818\|Ga0334804_142338	Not Available	598	Open in IMG/M
3300034282\|Ga0370492_0440044	Not Available	529	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.06%
Host-Associated	Host-Associated	0.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.34%
Aquatic	Environmental → Aquatic	4.72%
Arthropoda	Host-Associated → Arthropoda	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.68%
Peat	Environmental → Terrestrial → Peat	4.72%
Freshwater	Environmental → Aquatic → Freshwater	3.77%
Sediment	Environmental → Aquatic → Sediment	0.94%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.94%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.70%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.21%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.72%
Loam	Environmental → Terrestrial → Soil → Loam	3.77%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.94%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	53.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.32%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.49%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.66%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.72%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.94%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	24.53%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	19.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.66%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.89%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.89%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	1.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.89%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.89%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.89%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.94%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.94%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.94%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.94%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.94%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.94%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.94%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.94%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573002	Grass soil microbial communities from Rothamsted Park, UK - FE1 (NaCl 30g/L 5ml)	Environmental	Open in IMG/M
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011080	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 53 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011088	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 62 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021860	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025527	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033818	Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-M	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FE1_02046230	2189573002	Grass Soil	STLEALAAAADSAARACLHTLNLPGRQRHSERTQKARPKFPHATATKTTVTGKPQVTVFAPGFY
JGI12270J11330_100049688	3300000567	Peatlands Soil	LQAIAAAADAAARAALHTLNLPGRQRHSRRAQKARPKFPHATATKTTVTGKPRVTVFAPGFY*
JGI1027J12803_1042436882	3300000955	Soil	STLEALAAAADAAARACLHTLNIPGRQRHSERKQKARPKFPHVTATKITVTGKPQVTVFAPGFY*
Ga0070683_1014121071	3300005329	Corn Rhizosphere	SLPALAAAADAAARASLHTLNIPGRQRHSQRTQKARPKFPHASATKTTVTGKPQVTVFAPGFY*
Ga0066689_106560471	3300005447	Soil	AIAAAADAAARAALHTLNLPGRQRHSKRAQKARPKFPHTTGTKTTFTGKPQVTVFAPGLC
Ga0066661_108018441	3300005554	Soil	LAVAADSAARAILHTLNLPGRQRHSERAQKARPKFPHASATKTTVTGKPQVTVFAPGFS*
Ga0066699_109769311	3300005561	Soil	AAADAAARAALHTLNVPGRQRHSKRAQKARPKFPHATATKTTITGKPQVTVFAPGFG*
Ga0066790_100128561	3300005995	Soil	AAARAALHTLNVPGRQRHSERAQKARLKFPHATATKATVTGKPQVTVFAPGSC*
Ga0066656_109240422	3300006034	Soil	SLEAIAAAGDAAARAALHTLNVPGRQRHSKRAQKAAPKFRHATATKQTATGKPQVIIFAPGFS*
Ga0075030_1016112582	3300006162	Watersheds	ITAAADGAARAALHVLNVPGRQRHSRRAQKARPKFPHATGTKTTVTGKPRVTVFAPGFY*
Ga0074055_114402781	3300006573	Soil	VTATSTLEALAVAADSAARACLHTLNLPGRQRHSERTQKARPKFPHATATKTTATGKPQVTVFAPGFY*
Ga0074047_120490814	3300006576	Soil	SLQALAAAADAAARGCLHTLNIPGRQRHAERAQKARPKFPHASATKTTVTGKPQVTVFAPGFS*
Ga0066665_112166811	3300006796	Soil	DAIAAAADAAARAALHTLNLPGRQRHSKRAQKARPKFPHTTGTKTTFTGKPQVTVFAPGLC*
Ga0074063_118886151	3300006953	Soil	LHALAAAADAAARAMLHTLNVPGRQRHAQRAQKARPKFAHTPATKTTITGKPQVTVFAPGFC*
Ga0099795_104698601	3300007788	Vadose Zone Soil	SLEALAAAADAAARAALHTLNVPGRERHSDRAQKARPKFAHASVTKQAITGKPQVTVFAPGYS*
Ga0066793_105778051	3300009029	Prmafrost Soil	GGAGDAAARSALHTLNVPGRQRHSERAQKARPKFPHATATKTTITGKPQVTVFAPGLC*
Ga0066793_107742171	3300009029	Prmafrost Soil	VTASSSLRALAAAADSAALAALHTLNIPGRQRHSERVQKGRPKFAHAKATKTTVTGKPQVQVFAPGFC*
Ga0099829_117403151	3300009038	Vadose Zone Soil	SSLEALAAAAGSAARAALHTLNIPGRQRHSQRAQKARPKFRHATATKKTVTGKPQVTVFAPGSS*
Ga0099792_103875392	3300009143	Vadose Zone Soil	AADAAARAALHSLNVRARQRHSKRAQKARPKFGHTSATKKTVTGKPQVQVFAPGFS*
Ga0116214_10019191	3300009520	Peatlands Soil	ADAAARDCLHTLSLPGRQRHSKRAQKARPKFPHATATKTTVTGKPQVTVFAPGFS*
Ga0116214_10074301	3300009520	Peatlands Soil	LQAIAAAADAAARAALHTLNLPGRQRHSMRAQKARPKFPHATATKTTVTGKPRVTVFAPGFY*
Ga0116222_15118781	3300009521	Peatlands Soil	DAIAAAAGAAARAVLHTLSIPGRQRHSRRAQKARPKFPHATATKVTVTGKPQVTVFAPGFS*
Ga0116221_10490613	3300009523	Peatlands Soil	LTAAADAAARDCLHTLSLPGRQRHSKRAQKARPKFPHATATKTTVTGKPQVTVFAPGFS*
Ga0116221_13961662	3300009523	Peatlands Soil	AAADAAARDCLHTLSLPGRQRHSKRAQKARPKFPHATATKTTVTGKPQVTVFAPGFS*
Ga0116220_105777951	3300009525	Peatlands Soil	TSSLEALAAAADSAARACPHTLNLPGRQRHSERAQKARPKFPHATATKVTVTGKPQVTVFAPGFC*
Ga0116216_105957871	3300009698	Peatlands Soil	AADAAARAALHALNVPGRQRHSERAQKARPKFPHATATKTTVTGKPQVTVFAPGFY*
Ga0126374_104551991	3300009792	Tropical Forest Soil	DALAGAADAAARAMLHTLNLPGRQRHSERAQKARPKFPHAPATKTTVTGKPQVQVFAPGFR*
Ga0116219_105446051	3300009824	Peatlands Soil	AIAAAAGAAARAALHTLNVPGRQRHSERAQKARPKFPHATATKATVTGKPQVTVFAPGSC
Ga0123355_121798711	3300009826	Termite Gut	AAEDSAARACLHALNVPGRNRHSPRRQKHRPKFTHTAGTKKTVTGKYRATVWAPGRY*
Ga0126384_110548362	3300010046	Tropical Forest Soil	DAAARACLHTLNIPGRERHSPRVQKARPKFGHTSATKTTLTGKHEVIVYAPGRC*
Ga0134111_103404961	3300010329	Grasslands Soil	LEALAAAADAAARAMLHTLNAPGRQRHSKRAQKARPKFPHASATKTTVTGKPQVTVFAPGLC*
Ga0136449_1001242811	3300010379	Peatlands Soil	ALAAAAEAAARAALHTLNVPGRQRHSERAQKARPKFRHATATKQTVTGKPQVTVFAAGFS
Ga0136449_1005788831	3300010379	Peatlands Soil	LEAIAAAGDAAARAALHTLNVPGRQRHSKRAQKAGPKFRHATATKQTVTGKPQVIVFAPGFS*
Ga0136449_1023380692	3300010379	Peatlands Soil	AAAADTAARACLHALNVPGRQRHSRRAQKARPKFRHASATKKTVTGKPQITVFAPGLC*
Ga0136449_1040312872	3300010379	Peatlands Soil	SLDALATAAVSAARAILHTLNLPGRQRHSQRAQKARPKFPHASATKTTVTGKPQVTVFAPSRC*
Ga0124844_10543722	3300010868	Tropical Forest Soil	AAARAALHTLNIPGRQRHSQRTQKARPKFAHARVTKQTVTGKPEITVFAPGYS*
Ga0138568_11067941	3300011080	Peatlands Soil	TATSSLDALAAAADAAARACLHTLNVPGRQRHSKRAQKARPKFPHATGTKTTVTGKPQVTVFAPGYC*
Ga0138576_11548281	3300011088	Peatlands Soil	DAAARACLHTLNVPGRQRHSKRAQKARPKFPHATGTKTTVTGKPQVTVFAPGYC*
Ga0137392_112214331	3300011269	Vadose Zone Soil	IAAAADAAARAALHVLNVPGRQRHSRRAQKARPKFPHATVTKTTVTGKPQVTVFAPGFY*
Ga0137393_106400731	3300011271	Vadose Zone Soil	AAARAMLHTLNIPGRQRHSGRAQKARPKFPHASATKTTVTGKPLVTVFAPGFC*
Ga0137389_103126661	3300012096	Vadose Zone Soil	ADSAARAILHTLNLPGRERHSQRAQKARPKFGHTAATKQTVTGKPEVTVFAPGFS*
Ga0137389_104009782	3300012096	Vadose Zone Soil	AAGAAARAALHTLNSPGRQRHSKRAQKASPKFRHATATRQPITGKPRVTVFAPGFP*
Ga0137389_118079911	3300012096	Vadose Zone Soil	SLEAIAAAADAAARAALHALNVPGRQRHSRRAQKARPKFPHASATKTTVTGKPQVTVFAPGLC*
Ga0137383_108775882	3300012199	Vadose Zone Soil	SLDALAAAADAAARAALHTLNLPARQRHSRRAQKARPKFPHATATKTTITGKPQVTVFAPGFY*
Ga0137363_102944841	3300012202	Vadose Zone Soil	AIAAAGDAAARAALHTLNVPGRQRHSKRAQKAGPKFRHATATKQTVTGKPQVIIFAPGFS
Ga0137379_117601261	3300012209	Vadose Zone Soil	SSSLDALVAAADAAARAALHTLNVPGRERHSDRAQKARPKFAHASATKQTITGKPQVTVFAPGYS*
Ga0137378_105641181	3300012210	Vadose Zone Soil	IAAAAGAALHTLNSPGRQRHSKRAQKASPKFRHATATRQPITGKPRVTVFAPGFP*
Ga0137377_118584511	3300012211	Vadose Zone Soil	AADAAARAALHTLNIPGRERRSQRAQKARPKFRHTAATKQTITGKPQVTVFAPGSS*
Ga0137386_104429972	3300012351	Vadose Zone Soil	DAAARAALHTLNAPGRQRHSRRAQKARPKFPHATATKTTVTGKPQVTVFAPGLC*
Ga0137366_102882013	3300012354	Vadose Zone Soil	AAAADASARAALHTLNIPGRQRHSPRTQKARPKFPHAAATKTTVTGKPQVTVFAPGFS*
Ga0137385_105050333	3300012359	Vadose Zone Soil	LEAIAAAAGAAARAALHTLNSPGRQRHSKRAQKASPKFRHATATRQTITGKPRVTVFAPGFP*
Ga0137385_107436752	3300012359	Vadose Zone Soil	AAAAGAAARAALHTLNLPGRQRHSRRAQKARPKFPHVTATKTTVTGKPQVTVFAPGYC*
Ga0137385_116672471	3300012359	Vadose Zone Soil	GDAAARAVLHTLNIPGRQRHSKRAQKARPKFPHASATKTTVTGKPQVIVYAPGTY*
Ga0137361_117472871	3300012362	Vadose Zone Soil	AIAAAADAAARAALHALNVPGRERHSPRTQKARPKFAHTSATKQTITGKPEVSVFAPGSS
Ga0137396_104159901	3300012918	Vadose Zone Soil	ALAAAADAAARAALHTLNVPGRERHSDRAQKARPKFAHASVTKQAITGKPQVTVFAPGYS
Ga0137419_105854832	3300012925	Vadose Zone Soil	SLEAIAAAGAAAARAALHTLNVPGRQRHSKRAQKAGPKFRHATATKQTVTGKPQVIIFAPGFS*
Ga0137410_118478251	3300012944	Vadose Zone Soil	AADAAARAALHTLNIPARQRHSGRAQKARPKFPHATATKTTVTGKPHVTVFAPGFS*
Ga0126375_105456061	3300012948	Tropical Forest Soil	SSSLQVLAAAADAAARAALHTLNIPGRERHSQRAQKARPKFRHTTATKHTVTGKPQVSIFAPTAVLTAARHPAS*
Ga0134078_101251023	3300014157	Grasslands Soil	AITAAADGAARAALHVLNVPGRQRHSRRAQKARPKFPHATGTKTTVTGKPQVTVFAPGFY
Ga0182012_110620281	3300014499	Bog	IAAAADSAARAELHVLNAPGRQRHSRRAQKARPKFPHATATKRTFTGKPQVTVFC*
Ga0182024_121769261	3300014501	Permafrost	AAARACLHTLNVPGRQRHSRRAQKARPKFPHATATKTTVTGKPPVTVFAPGFC*
Ga0137403_115265852	3300015264	Vadose Zone Soil	SLDALAAAADAAARATLHILNVPGRQRHSQRAQKARPKFAHASATRQTVTGKPEVTMLAPGSS*
Ga0182041_122120911	3300016294	Soil	LAAAADAAARAALHTLNIPGRQRHSERAQKARPKFAHTSATKTTVTGKPQVNLYAPGFS
Ga0182039_107124591	3300016422	Soil	DAAARACLHTLNIPGRQRHSERKQKARPKFPHVTATKITVTGKPQVTVFAPGFY
Ga0187806_13108651	3300017928	Freshwater Sediment	ATSSLDAIAAAADSAARAELHVLNVPGRQRHSRRAQKSRPKFPHATATKRTFTGKPEVTVFAPGFC
Ga0187806_13236111	3300017928	Freshwater Sediment	AAAADAAARAALHALNVPGRQRHSQRAQKARPEFAHASATKQTITGKPEVTVFAPGSP
Ga0187847_103744881	3300017948	Peatland	VTATSSLDALAAAADAAARACLHSLNVPGRQRHSRRAQKARPKFPHATATKTTVTGKPQVTVFASGFR
Ga0187781_112245151	3300017972	Tropical Peatland	ESAARACLRTLNIPGRQRHSERKQKARPKFAHTSATKQTLTGKPEVTVFAPGFY
Ga0187769_114952521	3300018086	Tropical Peatland	TAVSSLHSLAATADAAARAALHTLNIPGRQRHAERAQKARPKFPHASATKTTVTGKPQVTVFAPGFS
Ga0213877_103656061	3300021372	Bulk Soil	SSLQAIAAAADIAARAHLHTLNIPGRERHSPRAQKARPKFGHTSATKKTVTGKHQVIVYAPGRC
Ga0213851_13154891	3300021860	Watersheds	QVTSSSSLEAIAAAGDAAARAALHALNVPGRQRHSERAQKARPKFPHATATKTTVTGKPQVTVFAPGFC
Ga0179589_105522571	3300024288	Vadose Zone Soil	LQALAAAADSAARALLHTLNLPGRQRHSKRAQKARPKFPHAAATRQTVTGKPRVTVFAPGFR
Ga0208714_10708921	3300025527	Arctic Peat Soil	ADDAAARAALHALNVPGRERHAQRAQKARPKFRHTAATKQTVTGKPRVTVFAPDTR
Ga0179587_108048631	3300026557	Vadose Zone Soil	AAAADAAARAALRALNVPGRQRHSKRAQKARPKFRHATATKKTVTGKPQVTVFAPGFP
Ga0179587_111432971	3300026557	Vadose Zone Soil	SSSLDALAAAADAAARAALHTLTIPGRQRHSRRAQKARPKFPHATAAKKTVTGKPQVTVFAPGFS
Ga0208199_10027406	3300027497	Peatlands Soil	LQAIAAAADAAARAALHTLNLPGRQRHSRRAQKARPKFPHATATKTTVTGKPRVTVFAPGFY
Ga0208044_11921521	3300027625	Peatlands Soil	LQALTAAADAAARDCLHTLSLPGRQRHSKRAQKARPKFPHATATKTTVTGKPQVTVFAPGFS
Ga0209009_11601811	3300027667	Forest Soil	AAAAETAARAMLHTLNIPGRQRHSERAQKARPKFPHASATKTTVTGKPQVTVFAPGFC
Ga0207862_10669253	3300027703	Tropical Forest Soil	TSSLAAIAAAADAAARAHLHTLNLPGRDRHSPREQKARPKFPHTSATKQTVTGKYQVIVYAPGRR
Ga0311344_114074881	3300030020	Bog	SSLEAIAAAGDAAARAALHALNVPGRQRHSERAQKARPKFPHATATKTTVTGKPQVTVFAPGSC
Ga0302176_102405971	3300030057	Palsa	AGIAAAHESAGRAHLHALNVPGRGRHSPRRQKHRPKFPHTSATKQTVTGKYEVIVYAPGR
Ga0316363_100316851	3300030659	Peatlands Soil	LFTATSSLEAITAAGDAAARAMLHTLNVPGRQRHSERTQKARPKFPHATATKTTVTGKPRVTVFAPGFS
Ga0310039_100261421	3300030706	Peatlands Soil	AAAADAAARACLHALNVPGRQRHSRRAQKARPKFPHATATKTTVTGKPQVTVFAPGSC
Ga0302180_101115352	3300031028	Palsa	EAIAAAADAAARAALHALNVPGRQRHSRRAQKACPKFPHATATKATVTGKPQVTVFAPGF
Ga0170824_1059833471	3300031231	Forest Soil	DASARAALHTLNLPGRQRHSKRAQKARPKFPHASATKQTVTGKPQVTVFAPGFC
Ga0318534_102084461	3300031544	Soil	QEALAAAADAAARACLHTLNLPGRHRHSGRTQKARPKFPHATATKTTATGKPQVTVFAPGFR
Ga0306918_110338541	3300031744	Soil	ADGAARAALHVLNIPGRQRHSRRAQKARPKFPHATGTKTTVTGKPQVTVFAPGFY
Ga0318494_101418181	3300031751	Soil	SLQALAAAADAAARDCLHTLSLPGRQRHSTRAQKARPKFPHASATKTTVTGNPQVTVFAPGFS
Ga0318494_106248322	3300031751	Soil	DAAARAHLHTLNVPGRERHSPRVQKARPKFGHTSATKKTVTGKHQVIVYAPGRC
Ga0318512_103822801	3300031846	Soil	ADAAARAALHTLNIPGRQRHSERAQKARPKFAHTSATKTTVTGKPQVNLYAPGFS
Ga0310912_107601042	3300031941	Soil	TSSLRGLAAAADAAARTCLHTLNIPGRQRHSERAQKARPKFPHASATKTTVTGKPQVTVFAPGFS
Ga0306922_113287782	3300032001	Soil	PEAAARAALHTLNVPGRQRHPERAQEARPKFRHATATKQTVTGKPQVTVFAPGFS
Ga0318575_105963262	3300032055	Soil	SVPVLSAAARDCLHTLSLPGRQRHSTRAQKARPKFPHASTTKTTVTGKPQVTVFAPGFS
Ga0318505_105752861	3300032060	Soil	TSSLDALAAAADAAARAALHTLNIPGRQRHSERAQKARPKFAHTSATKTTVTGKPQVNLYAPGFS
Ga0311301_117473901	3300032160	Peatlands Soil	AADAAARAALHALNIPGRERLSPRTQKARPKFAHTSATKQTITGKPEVSVFAPGFS
Ga0311301_128016611	3300032160	Peatlands Soil	LDALAAAADAAARACLHTLNVPGRQRHSRRAQKARPKFPHATGTKTTVTGKPQVTVFAPGYC
Ga0348332_113184641	3300032515	Plant Litter	ITAAGDAAARAALHTLNVPGRQRHSKRAQKAGPKFRHATATKQTITGKPHVTVFAPGFC
Ga0335080_100220948	3300032828	Soil	TATSSLAGLAAAADAAARAHLHTLNIPGRDRHSPREQKARPKFPHTSATKQTVTGKYDVIVYAPWSRS
Ga0335081_101765044	3300032892	Soil	ADAAARATLRTLNVPGRERHSDRAQKARPKFPHTSATKQTVTGKSQVSVFAPGFP
Ga0335075_103275931	3300032896	Soil	APAAAADAAARDCLHTLSLPGRQRHSKRAQKARPKFPHATTTKTTITGKPQATVFAPGFS
Ga0335083_108101831	3300032954	Soil	QATAAAASAAARAHLHTLNIPGRERHSPRVQKARPKFGHTSATKKTVTGKHQVIVYAPGR
Ga0335083_109450172	3300032954	Soil	AAEAAARAVLHTLNLPGRQRHSQRAQKARPKFPHASATKTTVTGKPQVTVFAPGLC
Ga0335073_111498242	3300033134	Soil	SLDAITAAADGAARAALHVLNVPGRQRHSRRAQKARPKFPHATGTKTTVTGKPRVTVFAPGFY
Ga0334804_000002_1_204	3300033818	Soil	TATSSLDALAAAADAAARACLHTLNVPGRQRHSRRAQKARPKFPHATATKTTVTGKPQVTVFASGFC
Ga0334804_142338_2_181	3300033818	Soil	LAAAADAAARAALRTLNVPGRQRHSERAQKARPKFPHATATKPTVTGKPQVIVFAPGFS
Ga0370492_0440044_331_528	3300034282	Untreated Peat Soil	SSSLEAIAAAGDAAARAALHALNVPGRQRHSERAQKARPKFPHATATKTTVTGKPQVTVFAPGSC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093829

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences