Metagenome / Metatranscriptome Family F093812

Basic Information
Family ID	F093812
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	46 residues
Representative Sequence	ILIWIIADSVNTNQWCIFTVVLTAFYILSRGIAKASRVLEQ
Number of Associated Samples	101
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	50.00 %
% of genes near scaffold ends (potentially truncated)	1.89 %
% of genes from short scaffolds (< 2000 bps)	1.89 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Most Common Taxonomy
Group	Unclassified (98.113 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.924 % of family members)
Environment Ontology (ENVO)	Unclassified (29.245 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.830 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.52% β-sheet: 0.00% Coil/Unstructured: 43.48%
Feature Viewer

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Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00156	Pribosyltran	50.00
PF13537	GATase_7	9.43
PF13522	GATase_6	5.66
PF01970	TctA	0.94
PF13200	DUF4015	0.94
PF02769	AIRS_C	0.94
PF00185	OTCace	0.94
PF12833	HTH_18	0.94
PF00903	Glyoxalase	0.94
PF04542	Sigma70_r2	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.94
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.94
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.94
COG1784	TctA family transporter	General function prediction only [R]	0.94
COG3333	TctA family transporter	General function prediction only [R]	0.94
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.94

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.11 %
All Organisms	root	All Organisms	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.11 %
cellular organisms	root	All Organisms → cellular organisms	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.11 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.11 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.11 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.11 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.11 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.11 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.94 %

Scaffold	Taxonomy	Length	IMG/M Link
3300006881\|Ga0068865_101654792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	576	Open in IMG/M
3300010320\|Ga0134109_10309199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	611	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.30%
Host-Associated	Host-Associated	21.70%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.42%
Plants	Host-Associated → Plants	21.70%
Aquatic	Environmental → Aquatic	1.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.21%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.49%
Freshwater	Environmental → Aquatic → Freshwater	0.94%
Sediment	Environmental → Aquatic → Sediment	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.38%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.55%
Loam	Environmental → Terrestrial → Soil → Loam	6.60%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.38%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.43%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.66%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.43%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.60%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.66%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.89%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.89%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.94%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005874	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_404	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019873	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300022886	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S079-202R-5	Environmental	Open in IMG/M
3300022901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4	Environmental	Open in IMG/M
3300022915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300024323	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026003	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_201 (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028065	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK26	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0063454_1008679552	3300004081	Soil	VVLILFAILWAATDSVNANTFLTATTVLTAAYFLSRGIAKASRVYEQ*
Ga0062593_1020038791	3300004114	Soil	LWFAVEIVFILIWIIADSVNTLIWVEVTTILTAFYLLSRGIAKASRVLEQ*
Ga0063356_1035047191	3300004463	Arabidopsis Thaliana Rhizosphere	IIIWIAADSVNTNQWCIFTVVLTAFYFLSRGIAKASRVLEQ*
Ga0068868_1011118302	3300005338	Miscanthus Rhizosphere	IEVIFAIIWISAESVNTHDWVWFSTILTAFYILSRGIAKASRVLEQ*
Ga0070661_1018274771	3300005344	Corn Rhizosphere	LWLAVEIVFILIWIIADSVNTLIWVEVTTILTAFYLLSRGIAKASRVLEQ*
Ga0066701_106850131	3300005552	Soil	LIEIVLILIWIIAKSVNTNQWCTYTVALTAFYILSRGIAKASRVLEQ*
Ga0066703_108028491	3300005568	Soil	EFAIWAFIEIVFVLIWIIAKSVDTRQWVIYTTVLTSFYILSRGIAKASRVLEQ*
Ga0068862_1012962041	3300005844	Switchgrass Rhizosphere	VIFAIIWISAESVNTHDWVWFSTILTAFYILSRGIAKASRVLEQ*
Ga0075288_10587602	3300005874	Rice Paddy Soil	LILIWIIADSVNTNQWCVFTVALTAFYILSRGIAKASRVLEQ*
Ga0074060_118262942	3300006604	Soil	ILILIWIIADSVNTNQWYVFTVALTAFYFLSRGIAKASRVLEQ*
Ga0079222_120969181	3300006755	Agricultural Soil	ITAESVNTHDVVWFTTILTAFFVLSRGIAKASRILEQ*
Ga0066653_105694762	3300006791	Soil	FVIIWIAADSVNTQFWTIITTVTTSFYLLSRGIAKASRVLEQ*
Ga0066658_107750142	3300006794	Soil	VELIFALIWIVADSVDTRQWVLYTTVLTAFYMLSRGIAKASRVLEA*
Ga0079220_112676431	3300006806	Agricultural Soil	IIADSVNTFIWTELTTVLTAFYLLSRGIAKASRVLEQ*
Ga0075431_1006580502	3300006847	Populus Rhizosphere	FALIEFVLIIIWIAADSVNTNQWCIFTVVLTAFYFLSRGIAKASRVLEQ*
Ga0075433_119490692	3300006852	Populus Rhizosphere	GNAELAVFALIEFVLIIIWIAADSVNTNQWCIFTVVLTAFYFLSRGIAKASRVLEQ*
Ga0068865_1016547922	3300006881	Miscanthus Rhizosphere	PGNAEFAVYFIIEVIFAIIWISAESVNTHDWVFFSTILTAFYILSRGIAKASRVLEQ*
Ga0075436_1002012402	3300006914	Populus Rhizosphere	PGNAEFAVYFIIEVIFVIIWITAESVNTHDWVWFTTILTAFYVLSRGIAKASRVLEQ*
Ga0075435_1001064573	3300007076	Populus Rhizosphere	FALFAFIEIVFIFIWIFAESVDTQMWTILTTVLTAFYFLSRGIAKASRVLEQ*
Ga0066710_1039840851	3300009012	Grasslands Soil	IEIVFVLIWIIAKSVDTRQWVLYTTILTAFYILSRGIAKASRVLEQ
Ga0111539_121408141	3300009094	Populus Rhizosphere	SAESVNTHDWVFFSTILTAFYILSRGIAKASRVLEQ*
Ga0075418_110361132	3300009100	Populus Rhizosphere	WLVCWFADSLGSSDWLLTFTVLTAFYLLSRGIAKASRVLEQ*
Ga0105243_101181313	3300009148	Miscanthus Rhizosphere	FLIEVIFAIIWISAESVNTHDWVWFSTILTAFYILSRGIAKASRVLEQ*
Ga0075423_100726084	3300009162	Populus Rhizosphere	AESVNTHDWVFFSTILTAFYILSRGIAKASRVLEQ*
Ga0105242_128084042	3300009176	Miscanthus Rhizosphere	FAVYFLIEVIFAIIWISAESVNTHDWVWFSTILTAFYILSRGIAKASRVLEQ*
Ga0126313_111341252	3300009840	Serpentine Soil	AAESVDTDRWCVFTVVLTAFYFLSRGIAKASRVLEQ*
Ga0126384_111137511	3300010046	Tropical Forest Soil	VYFIIEIIFVIIWISADSVDTHDWVWFTTILTAFYMLSRGIAKASRVLEQ*
Ga0134109_103091991	3300010320	Grasslands Soil	MPIPGNAEFAIWFVIEIVFVLIWIIAKSVDTQQWVLYTTVLTSFYILSRGIAK
Ga0134080_101334461	3300010333	Grasslands Soil	IEFVFVLIWIIADSVDTQQWVLYTTVLTSFYILSRGIAKASRVLEQ*
Ga0126376_124368121	3300010359	Tropical Forest Soil	AEFALWAFIEIVFVIIWITADSVNTLVWTELTTVLTAFYLLSRGIAKASRVLEQ*
Ga0126377_125771961	3300010362	Tropical Forest Soil	EFALYAFIEIVFVLIWIIADSVNTQQWVLYTTVLTAFYVLSRGIAKASRVLEQ*
Ga0134122_119736022	3300010400	Terrestrial Soil	DSVNTNQWCIFTVALTAFYILSRGIAKASRVLEQ*
Ga0137364_101452063	3300012198	Vadose Zone Soil	VYFLIELIFVLIWIVADSVDTRQWVLYTTILTAFYILSRGIAKASRVLEQ*
Ga0137364_103137481	3300012198	Vadose Zone Soil	IEVIFAIIWIAAESVNTHDWVWFSTILTAFYILSRGIAKASRVLEQ*
Ga0137364_106887491	3300012198	Vadose Zone Soil	IIAKSVNTFEWCIFTVVLTSFYFLSRGIAKASRVLEQ*
Ga0137365_103967023	3300012201	Vadose Zone Soil	FFLWLVIEVILVVIWIAAESVNTLIWVEVTTILTAFYLLSRGIAKASRVLEQ*
Ga0137376_106861091	3300012208	Vadose Zone Soil	IWIIADSVDTQQWVLYTTVLTSFYILSRGIAKASRVLEQ*
Ga0137378_104927602	3300012210	Vadose Zone Soil	VLIWIIAKSVDTQQWVLYTTVLTSFYILSRGIAKASRVLEQ*
Ga0137370_100793341	3300012285	Vadose Zone Soil	EIVLILIWIIAKSVNTFEWCVFTVVLTSFYFLSRGIAKASRVLEQ*
Ga0137371_113702511	3300012356	Vadose Zone Soil	EIVFVLIWIIADSVDTQQWVLYTTVLTSFYILSRGIAKASRVLEQ*
Ga0137373_101202883	3300012532	Vadose Zone Soil	IWIIADSVTTQDWAIYTVVLTAFYLLSRGIAKASRVLEQ*
Ga0137397_103512322	3300012685	Vadose Zone Soil	LIEVIFALIWIIADSVDTRQWVLYTTILTAFYMLSRGIGKASRVLEQ*
Ga0157284_101971692	3300012893	Soil	IIIWIVADSVNTNQWCIFTVVLTAFYFLSRGIAKASRVLEQ*
Ga0157291_102229973	3300012902	Soil	ADSVNTNQWCIFTVVLTAFYFLSRGIAKASRVLEQ*
Ga0157295_101865252	3300012906	Soil	IWIIADSVNMAMWVEVTTVLTAFYLLSRGIAKASRVLEQ*
Ga0134087_103649961	3300012977	Grasslands Soil	IIFVIIWIAADSVDTHDWVWFTTILTAFYILSRGIAKASRVLEQ*
Ga0164309_111572812	3300012984	Soil	GNAEFAVYFLIEFIFVLIWIIADSVNTQQWVLYTTVLTAFYILSRGIAKASRVLEQ*
Ga0157373_106114482	3300013100	Corn Rhizosphere	IIEVIFAIIWISAESVNTHDWVFFSTILTAFYILSRGIAKASRVLEQ*
Ga0157375_101817663	3300013308	Miscanthus Rhizosphere	ILIWIIADSVNTNQWCIFTVVLTAFYILSRGIAKASRVLEQ*
Ga0134078_104414531	3300014157	Grasslands Soil	IADSVDTQQWVLYTTVLTAFYILSRGIAKASRVLEH*
Ga0134079_104911962	3300014166	Grasslands Soil	WLVVELIFVIIWIAADSVNTQFWTIITTVTTSFYLLSRGIAKASRVLEQ*
Ga0182000_103021992	3300014487	Soil	VIIWIAADSVNTHDWVWFTTILTAFYMLSRGIAKASRVLEQ*
Ga0134085_102497181	3300015359	Grasslands Soil	IWIAAESVDTQQWVLYTTVLTAFYLLSRGIAKASRVLEQ*
Ga0134085_105795802	3300015359	Grasslands Soil	LIEVIFAIIWISAESVNTHDWVWFSTILTAFYILSRGIAKASRVLEQ*
Ga0132257_1034369212	3300015373	Arabidopsis Rhizosphere	FVVEVILILIWIIADSVNTNQWCVFTVALTAFYFLSRGIAKASRVLEQ*
Ga0163161_105781762	3300017792	Switchgrass Rhizosphere	IEATLIIIWIVADSVDTDRWCVFTVVLTAFYFLSRGIAKASRVLEQ
Ga0187786_101152921	3300017944	Tropical Peatland	IWIIAKSVDTQSWSIYTVALTSFYILSRGIAKASRVLEQ
Ga0066667_112754282	3300018433	Grasslands Soil	GNAEFALWLVVELIFVIIWIAADSVNTQFWTIITTVTTSFYLLSRGIAKASRVLEQ
Ga0066669_114780052	3300018482	Grasslands Soil	EVATCLAVQLSLEMIWIIADSVTTQDWAIYTVVLTAFYLLSRGIAKASRVLEQ
Ga0184642_13173811	3300019279	Groundwater Sediment	PGNAEFALWFVIEIVLVIIWIAAESVDTNQWTIYTVVLTAFYLLSRGIAKASRVLEQ
Ga0173482_101886251	3300019361	Soil	VIEFTLILIWIIADSVNTDRWCVFTVVLTAFYFLSRGIAKASRVLEQ
Ga0193700_10520792	3300019873	Soil	AEFALWFVIEIVLVIIWIAAESVDTNQWTIYTVVLTAFYLLSRGIAKASRVLEQ
Ga0193721_11326351	3300020018	Soil	FLIELIFALIWIIAESVDTRQWVLYTTVLTAFYMLSRGIAKASRVLEQ
Ga0222622_100559663	3300022756	Groundwater Sediment	YFVVEVILILIWIIADSVNTNQWCVFTVALTAFYLLSRGIAKASRVLEQ
Ga0247792_10352011	3300022880	Soil	GNAELAVFALIEFVLIIIWIAADSVNTNQWCIFTVVLTAFYFLSRGIAKASRVLEQ
Ga0247786_10521141	3300022883	Soil	IEFVLIIIWIAADSVNTNQWCIFTVVLTAFYFLSRGIAKASRVLEQ
Ga0247746_11070851	3300022886	Soil	NAELAVFALIEFVLIIIWIAADSVNTNQWCIFTVVLTAFYFLSRGIAKASRVLEQ
Ga0247788_10609182	3300022901	Soil	ALIEFVLIIIWIAADSVNTNQWCIFTVVLTAFYFLSRGIAKASRVLEQ
Ga0247790_100980651	3300022915	Soil	VLIIIWIAADSVNTNQWCIFTVVLTAFYFLSRGIAKASRVLEQ
Ga0247794_101489772	3300024055	Soil	PGNAEFALFAFIEIVLIIIWIVADSVNTNQWCIFTVVLTAFYFLSRGIAKASRVLEQ
Ga0247666_10221171	3300024323	Soil	IIWIAADSVNTNQWCIFTVVLTAFYFLSRGIAKASRVLEQ
Ga0207692_110823871	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	LYALIEIVLIIIWIAADSVNTNQWCIFTVVLTAFYFLSRGIAKASRVLEQ
Ga0207642_106820692	3300025899	Miscanthus Rhizosphere	EFAVYFLIEVIFAIIWISAESVNTHDWVWFSTILTAFYILSRGIAKASRVLEQ
Ga0207684_103433391	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	SAESVNTHDWVFFSTILTAFYILSRGIAKASRVLEQ
Ga0207684_104200351	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	EFAIWAFIEIVFVIIWITAKSVDTRQWVIYTTILTSFYILSRGIAKASRVLEQ
Ga0207693_100502061	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LIEVIFAIIWISAESVNTHDWVWFSTILTAFYILSRGIAKASRVLEQ
Ga0207657_104235871	3300025919	Corn Rhizosphere	ILILIWIIADSVNTNQWCVFTVALTAFYLLSRGIAKASRVLEQ
Ga0207700_113516221	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	IVLIIIWIAADSVNTNQWCIFTVVLTAFYFLSRGIAKASRVLEQ
Ga0207664_113798582	3300025929	Agricultural Soil	ALIWIIADSVDTRQWVLYTTILTAFYMLSRGIAKASRVLEQ
Ga0207679_111019622	3300025945	Corn Rhizosphere	ADSVNTNQWCIFTVVLTAFYFLSRGIAKASRVLEQ
Ga0208284_10209691	3300026003	Rice Paddy Soil	FVVEVILILIWIIADSVNTNQWCVFTVALTAFYLLSRGIAKASRVLEQ
Ga0207641_114950161	3300026088	Switchgrass Rhizosphere	WIIADSVNTNQWCIFTVVLTAFYILSRGIAKASRVLEQ
Ga0209153_11734232	3300026312	Soil	VVYFLVELIFALIWIVADSVDTRQWVLYTTVLTAFYMLSRGIAKASRVLEA
Ga0209267_11953082	3300026331	Soil	IAKSVDTRQWVIYTTVLTSFYILSRGIAKASRVLEQ
Ga0209807_11565803	3300026530	Soil	IWIIAKSVDTRQWALYTVVLTAFYLLSRGIAKASRVLER
Ga0209177_105030512	3300027775	Agricultural Soil	ELIFVIIWIVADSVDTQQWVLYTTVLTAFYILSRGIAKASRVLEV
Ga0209811_103486141	3300027821	Surface Soil	EVILILIWIIADSVNTNQWCVFTVALTAFYFLSRGIAKASRVLEQ
Ga0247685_10390312	3300028065	Soil	VIEITLILIWIIADSVNTNQWCIFTVALTAFYILSRGIAKASRVLEQ
Ga0268264_110150961	3300028381	Switchgrass Rhizosphere	IWISAESVNTHDWVWFSTILTAFYILSRGIAKASRVLEQ
Ga0247820_106164381	3300028597	Soil	LYAVIEITLIIIWITADSVDTNRWCVFTVVLTAFYILSRGIAKASRVLEQ
Ga0307322_100291901	3300028710	Soil	SAESVNTHDWVWFSTILTAFYILSRGIAKASRVLEQ
Ga0307311_102744101	3300028716	Soil	AESVNTHDWVWFSTILTAFYILSRGIAKASRVLEQ
Ga0307306_101136992	3300028782	Soil	IEIVLILIWIIAKSVNTFEWCIFTVVLTSFYFLSRGIAKASRVLEQ
Ga0307306_102180732	3300028782	Soil	FAVYFLIELIFALIWIIADSVNTQQWVLYTTVLTAFYILSRGIAKASRVLEQ
Ga0307323_101909151	3300028787	Soil	EFIFTLIWIIADSFDTRQWVLYTTILTAFYILSRGIAKASRVLEQ
Ga0307299_101781442	3300028793	Soil	IADSFDTRQWVLYTTILTAFYILSRGIAKASRVLEQ
Ga0247825_105232931	3300028812	Soil	VFALIEFVLIIIWIAADSVNTNQWCIFTVVLTAFYFLSRGIAKASRVLEQ
Ga0307302_100378553	3300028814	Soil	AEFALWFVIEIVLVIIWIAAESVDTRQWTIYTVILTAFYLLSRGIAKASRVLEQ
Ga0307310_103156021	3300028824	Soil	ALFALIEIVLILIWIIAKSVNTFEWCIFTVVLTSFYFLSRGIAKASRVLEQ
Ga0307312_104658422	3300028828	Soil	AEFALFALIEIVLILIWIIAKSVNTFEWCIFTVVLTSFYFLSRGIAKASRVLEQ
Ga0307278_104570782	3300028878	Soil	PGNAEFAVYFLIEVIFAIIWISAESVNTHDWVWFSTILTAFYILSRGIAKASRVLEQ
Ga0307308_102262901	3300028884	Soil	VVEVILILIWIIADSVNTNQWCVFTVALTAFYLLSRGIAKASRVLEQ
Ga0307497_104764642	3300031226	Soil	ITADSVDTDRWCVFTVVLTAFYILSRGIAKASRVLEQ
Ga0310890_103663982	3300032075	Soil	EFVLIIIWIAADSVNTNQWCIFTVVLTAFYFLSRGIAKASRVLEQ
Ga0307472_1022298091	3300032205	Hardwood Forest Soil	NAEFALFALIEFVLILIWIIAKSVNTFEWCIFTVVLTSFYFLSRGIAKASRVLEQ
Ga0335077_121852681	3300033158	Soil	AVIEITLILIWIIAKSVDTQQWSIYTVVLTSFYILSRGIAKASRVLEQ

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093812

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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