Metagenome / Metatranscriptome Family F093780

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093780
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	89 residues
Representative Sequence	MLCSIIANGNLHIFQVTATGDLVHGSHAAGTGAFPFDTVTNDCDPKVVPTAQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK
Number of Associated Samples	69
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	64.76 %
% of genes near scaffold ends (potentially truncated)	33.96 %
% of genes from short scaffolds (< 2000 bps)	83.02 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.79

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (61.321 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (40.566 % of family members)
Environment Ontology (ENVO)	Unclassified (33.962 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.396 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 45.22% Coil/Unstructured: 54.78%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.79
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.79
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SCOP family	SCOP domain	Representative PDB	TM-score
b.68.8.1: Fucose-specific lectin	d6gkea_	6gke	0.77172
b.68.1.1: Sialidases (neuraminidases)	d1so7a_	1so7	0.76175
b.68.1.1: Sialidases (neuraminidases)	d1s0ka3	1s0k	0.76075
b.67.2.0: automated matches	d3c2ua1	3c2u	0.7471
b.68.1.1: Sialidases (neuraminidases)	d2slia2	2sli	0.73322

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF03971	IDH	46.23
PF04542	Sigma70_r2	3.77
PF02771	Acyl-CoA_dh_N	1.89
PF05726	Pirin_C	1.89
PF08241	Methyltransf_11	1.89
PF13669	Glyoxalase_4	1.89
PF04237	YjbR	1.89
PF13411	MerR_1	0.94
PF12833	HTH_18	0.94
PF02781	G6PD_C	0.94
PF12704	MacB_PCD	0.94
PF12840	HTH_20	0.94
PF11716	MDMPI_N	0.94
PF00990	GGDEF	0.94
PF04909	Amidohydro_2	0.94
PF13460	NAD_binding_10	0.94
PF00067	p450	0.94
PF13344	Hydrolase_6	0.94
PF16363	GDP_Man_Dehyd	0.94
PF08281	Sigma70_r4_2	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG2838	Monomeric isocitrate dehydrogenase	Energy production and conversion [C]	46.23
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	3.77
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	3.77
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	3.77
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	3.77
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	1.89
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	1.89
COG2315	Predicted DNA-binding protein with Ã¢â‚¬Ëœdouble-wingÃ¢â‚¬â„¢ structural motif, MmcQ/YjbR family	Transcription [K]	1.89
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	0.94
COG2124	Cytochrome P450	Defense mechanisms [V]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
All Organisms	root	All Organisms	38.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
cellular organisms	root	All Organisms → cellular organisms	38.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	33.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	31.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	13.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	5.66 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.89 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.94 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.94 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.66 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.89 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.94 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.94 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.66 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.94 %
Embleya	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Embleya	0.94 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.94 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.94 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	0.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.66 %
Nocardia jiangxiensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia jiangxiensis	0.94 %
unclassified Arthrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter	0.94 %
Embleya scabrispora	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Embleya → Embleya scabrispora	0.94 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.94 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.66 %
Arthrobacter sp. Hiyo4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. Hiyo4	0.94 %
Nocardia jiangxiensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia jiangxiensis	0.94 %
Embleya scabrispora	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Embleya → Embleya scabrispora	0.94 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.94 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10833567	Not Available	528	Open in IMG/M
3300004080\|Ga0062385_10233678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1014	Open in IMG/M
3300004091\|Ga0062387_101455107	Not Available	548	Open in IMG/M
3300006638\|Ga0075522_10370861	Not Available	681	Open in IMG/M
3300009630\|Ga0116114_1177757	Not Available	535	Open in IMG/M
3300009635\|Ga0116117_1207320	Not Available	519	Open in IMG/M
3300009665\|Ga0116135_1207838	Not Available	750	Open in IMG/M
3300009665\|Ga0116135_1385980	Not Available	566	Open in IMG/M
3300010371\|Ga0134125_10251408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1964	Open in IMG/M
3300010373\|Ga0134128_10356619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1634	Open in IMG/M
3300014156\|Ga0181518_10433206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	631	Open in IMG/M
3300014168\|Ga0181534_10288470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	881	Open in IMG/M
3300014168\|Ga0181534_10895073	Not Available	530	Open in IMG/M
3300014169\|Ga0181531_10014700	All Organisms → cellular organisms → Bacteria	4487	Open in IMG/M
3300014200\|Ga0181526_10702111	Not Available	638	Open in IMG/M
3300014201\|Ga0181537_10313951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1076	Open in IMG/M
3300014493\|Ga0182016_10046746	Not Available	3424	Open in IMG/M
3300014495\|Ga0182015_10074029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2409	Open in IMG/M
3300014495\|Ga0182015_10259550	Not Available	1145	Open in IMG/M
3300014501\|Ga0182024_10122975	All Organisms → cellular organisms → Bacteria	3707	Open in IMG/M
3300014501\|Ga0182024_12152119	Not Available	612	Open in IMG/M
3300014654\|Ga0181525_10171083	Not Available	1189	Open in IMG/M
3300014654\|Ga0181525_10549796	Not Available	641	Open in IMG/M
3300014654\|Ga0181525_10888254	Not Available	505	Open in IMG/M
3300014658\|Ga0181519_10264254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1073	Open in IMG/M
3300014658\|Ga0181519_10474154	Not Available	771	Open in IMG/M
3300014838\|Ga0182030_10001374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	50051	Open in IMG/M
3300014838\|Ga0182030_10130763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3288	Open in IMG/M
3300017946\|Ga0187879_10180422	Not Available	1187	Open in IMG/M
3300017946\|Ga0187879_10499788	Not Available	674	Open in IMG/M
3300017948\|Ga0187847_10369233	Not Available	787	Open in IMG/M
3300017948\|Ga0187847_10610676	Not Available	610	Open in IMG/M
3300018008\|Ga0187888_1375151	Not Available	539	Open in IMG/M
3300018009\|Ga0187884_10431858	Not Available	530	Open in IMG/M
3300018016\|Ga0187880_1057105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2057	Open in IMG/M
3300018017\|Ga0187872_10193250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	944	Open in IMG/M
3300018033\|Ga0187867_10095262	Not Available	1739	Open in IMG/M
3300018035\|Ga0187875_10497764	Not Available	647	Open in IMG/M
3300018037\|Ga0187883_10427004	Not Available	680	Open in IMG/M
3300021181\|Ga0210388_10317780	Not Available	1369	Open in IMG/M
3300023090\|Ga0224558_1147772	Not Available	757	Open in IMG/M
3300023101\|Ga0224557_1271701	Not Available	551	Open in IMG/M
3300027803\|Ga0209910_10037075	Not Available	552	Open in IMG/M
3300027908\|Ga0209006_10483730	Not Available	1034	Open in IMG/M
3300028747\|Ga0302219_10220384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	733	Open in IMG/M
3300028759\|Ga0302224_10141979	Not Available	938	Open in IMG/M
3300028765\|Ga0302198_10512805	Not Available	535	Open in IMG/M
3300028773\|Ga0302234_10035811	Not Available	2290	Open in IMG/M
3300028773\|Ga0302234_10459752	Not Available	544	Open in IMG/M
3300028773\|Ga0302234_10487361	Not Available	527	Open in IMG/M
3300028775\|Ga0302231_10076394	Not Available	1398	Open in IMG/M
3300028798\|Ga0302222_10245323	Not Available	699	Open in IMG/M
3300028879\|Ga0302229_10228790	Not Available	846	Open in IMG/M
3300029882\|Ga0311368_10324325	Not Available	1158	Open in IMG/M
3300029910\|Ga0311369_10522534	Not Available	1005	Open in IMG/M
3300029943\|Ga0311340_10423299	Not Available	1216	Open in IMG/M
3300029943\|Ga0311340_10751392	Not Available	829	Open in IMG/M
3300029951\|Ga0311371_11935910	Not Available	629	Open in IMG/M
3300029951\|Ga0311371_12164192	Not Available	582	Open in IMG/M
3300029952\|Ga0311346_10373971	Not Available	1402	Open in IMG/M
3300029999\|Ga0311339_10045518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	5978	Open in IMG/M
3300029999\|Ga0311339_10170987	Not Available	2513	Open in IMG/M
3300029999\|Ga0311339_10347988	All Organisms → cellular organisms → Bacteria	1569	Open in IMG/M
3300029999\|Ga0311339_11096914	All Organisms → cellular organisms → Bacteria → Terrabacteria group	737	Open in IMG/M
3300030007\|Ga0311338_10392340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1493	Open in IMG/M
3300030007\|Ga0311338_11014100	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300030058\|Ga0302179_10015686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3786	Open in IMG/M
3300030399\|Ga0311353_10023827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6658	Open in IMG/M
3300030399\|Ga0311353_11050696	Not Available	679	Open in IMG/M
3300030503\|Ga0311370_10281483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2167	Open in IMG/M
3300030503\|Ga0311370_11102674	Not Available	872	Open in IMG/M
3300030503\|Ga0311370_11206252	Not Available	820	Open in IMG/M
3300030503\|Ga0311370_11812006	Not Available	620	Open in IMG/M
3300030503\|Ga0311370_12291021	Not Available	527	Open in IMG/M
3300030520\|Ga0311372_12067577	Not Available	663	Open in IMG/M
3300030524\|Ga0311357_11014063	All Organisms → cellular organisms → Bacteria → Terrabacteria group	729	Open in IMG/M
3300030524\|Ga0311357_11337821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	613	Open in IMG/M
3300030580\|Ga0311355_10353444	Not Available	1455	Open in IMG/M
3300030580\|Ga0311355_11394237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	610	Open in IMG/M
3300030688\|Ga0311345_10660935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	851	Open in IMG/M
3300030739\|Ga0302311_10591847	Not Available	748	Open in IMG/M
3300030906\|Ga0302314_10909041	Not Available	863	Open in IMG/M
3300031028\|Ga0302180_10562613	Not Available	552	Open in IMG/M
3300031233\|Ga0302307_10695462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	510	Open in IMG/M
3300031234\|Ga0302325_10087866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5903	Open in IMG/M
3300031234\|Ga0302325_10666812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1509	Open in IMG/M
3300031234\|Ga0302325_11120599	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300031236\|Ga0302324_100553983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. Hiyo4	1662	Open in IMG/M
3300031236\|Ga0302324_100627457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1535	Open in IMG/M
3300031525\|Ga0302326_12127764	Not Available	719	Open in IMG/M
3300031708\|Ga0310686_100117669	Not Available	706	Open in IMG/M
3300031708\|Ga0310686_107448992	Not Available	508	Open in IMG/M
3300031708\|Ga0310686_108673666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4649	Open in IMG/M
3300031708\|Ga0310686_111792492	All Organisms → cellular organisms → Bacteria → Terrabacteria group	723	Open in IMG/M
3300031708\|Ga0310686_113202214	Not Available	992	Open in IMG/M
3300031708\|Ga0310686_114117820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia jiangxiensis	734	Open in IMG/M
3300031708\|Ga0310686_116641882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	591	Open in IMG/M
3300031871\|Ga0316036_114682	Not Available	556	Open in IMG/M
3300032515\|Ga0348332_13149804	Not Available	743	Open in IMG/M
3300034124\|Ga0370483_0102148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	944	Open in IMG/M
3300034163\|Ga0370515_0042543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2022	Open in IMG/M
3300034163\|Ga0370515_0044431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Embleya → Embleya scabrispora	1973	Open in IMG/M
3300034163\|Ga0370515_0050883	Not Available	1826	Open in IMG/M
3300034163\|Ga0370515_0119815	Not Available	1133	Open in IMG/M
3300034199\|Ga0370514_001831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	4693	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.64%
Aquatic	Environmental → Aquatic	27.36%

Habitat	Taxonomy	Distribution
Peat	Environmental → Terrestrial → Peat	45.28%
Freshwater	Environmental → Aquatic → Freshwater	27.36%
Soil	Environmental → Terrestrial → Soil	26.42%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	45.28%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	27.36%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.21%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	11.32%
Loam	Environmental → Terrestrial → Soil → Loam	1.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	45.28%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	23.58%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.43%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	7.55%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.66%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.89%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.94%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	40.57%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	11.32%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	10.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.55%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	5.66%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.77%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	2.83%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	2.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.89%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.89%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.89%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.94%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300009630	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300023090	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24	Environmental	Open in IMG/M
3300023101	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14	Environmental	Open in IMG/M
3300027803	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712S3S	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028765	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_2	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028775	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029952	II_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030688	II_Bog_N2 coassembly	Environmental	Open in IMG/M
3300030739	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3	Environmental	Open in IMG/M
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031871	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLE2 metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M
3300034199	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_108335672	3300001593	Forest Soil	MLCSIIADGKLHIFQVTATGDLVHGSHAAGTGAFPFETVTNDCDPKVVPTTQIFNNNLHVFAQKTSGEVVWGVAPHGGKWDVKVLGK*
Ga0062385_102336782	3300004080	Bog Forest Soil	MLCSIVADGNLHVFQVTATGDLVHRSHAAGSGNFPSETITSGCDPKVAPTAEIFNNNLHVFAQSTSGEIVWGLLPHGGKVQVKVLGN*
Ga0062387_1014551071	3300004091	Bog Forest Soil	MLCSIIADGKLHIFQVTATGDLVHGSHAAGTGAFPFETVTNDCDPKVVPTTEIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK*
Ga0075522_103708612	3300006638	Arctic Peat Soil	MLCSITSNNDLHIFQVTAQGDLVHGSHAAGSGAFPLDTIASGCDPQVAPTAQTFNNNLHVFVQKTGGEIVWGVAPHGRKWSLKVLGTS*
Ga0116114_11777572	3300009630	Peatland	MLCSIIANGNLHIFQVTATGDLVHGSHAAGTGAFPFDTITNDCDAKVVPTAQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK*
Ga0116117_12073202	3300009635	Peatland	TRIAPRSSKENENMLCSIIADGKLHVFQVTATGDLVHGSHAAGTGAFPFDTVTNDCDPKIVPTTQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK*
Ga0116135_12078381	3300009665	Peatland	MLCSIIADGNLHIFQVTATGDLVHGSHAAGTGAFPFDTVTNDCDPKIVPTTQIFNNNLHVFAQKTSGDVVWGVASHGGKWDVKVLGK*
Ga0116135_13859801	3300009665	Peatland	GNLHVFQVTATGDLMHRSHAAGTGNFPSDTITSDCDPKVAPTAEIFNNNLHVFAQKTNGQIVWGLLPHGGKVEVKVLDS*
Ga0134125_102514083	3300010371	Terrestrial Soil	MLCSIISHNDLHVFTVTEQGNLVHGSHKAGTGAFPLETVTQGCDPHVAPSAESFNNNLHVFAQKTDGQIVWAVAPHGGKWDVKGLGS*
Ga0134128_103566191	3300010373	Terrestrial Soil	LHVFTVTEQGNLVHGSHKAGTGAFPLETVTQGCDPHVAPSAESFNNNLHVFAQKTDGQIVWAVAPHGGKWDVKGLGS*
Ga0181518_104332062	3300014156	Bog	MPTSIISNGDLQVFDVTGSGDLVHGSHAAGTGAFPLETITTGCNPQVAPTAQTFNNNLHVFAQKSSGEIVWGVAPHGGKWDVKVLGA*
Ga0181534_102884702	3300014168	Bog	MLCSIVANDNLHVFQVTPAGDLVHRTHAANSGNFPSETLTSDCDPKVAPTAEIFNNNVHVFAQKTSGEIVWGLIPHGGKVQVKVLGS*
Ga0181534_108950731	3300014168	Bog	MLTSIISNGDLHVFSVTGTGDLVHGSHAAGTGAFPLDTIVSGCDPHVAPTAQTFNNNLHVFAQKTSGEIVWGVAPHGGKWDVKVLGA*
Ga0181531_100147003	3300014169	Bog	MLHPGVFNRIAPSYSKENERMLCSIIANGNLHVFQVTTTGDLVHGSHAAGTGAFPFDTVTSDCDPKVVPTAQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK*
Ga0181526_107021112	3300014200	Bog	MLPRGAFTRIAPCSSKENENMLCSIIADGNLHIFQVTASGDLVHGSHAAGTGAFPFDTVTNDCDPKVVPTAQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK*
Ga0181537_103139512	3300014201	Bog	MLCSIVANDNLHVFQVTPAGDLVHRTHAANTGSFPSETITSDCDPKVAPTAEIFNNNVHVFAQKTSGEIVWAFIPHGGKVEVKVLGS*
Ga0182016_100467462	3300014493	Bog	MLHPGVFNRIAPRYSKENERMLCSIIANGNLHVFQVTTTGDLVHGSHAAGTGAFPFDTVTSDCDPKVVPTAQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK*
Ga0182015_100740292	3300014495	Palsa	MRPRSSKENENMLCSIIADGKLHIFQVTPTCDLVHGSHAAGTGAFPFDTVTNDCDPKVVPTAQIFNNNLHVFAQKTNGDVVWGVAPHGGKWDVKVLGK*
Ga0182015_102595501	3300014495	Palsa	MLCSIIADGHLHIFQVTTTGDLVHGSHAAGTGAFPFDTVTNDCDPKVAPTVEIFNNNLHVFAQKTDGEVVWGVAPHGGKWDVKVLGK*
Ga0182024_101229752	3300014501	Permafrost	MLCSITSNNDLHIFQVTAQGDLVHGSHAAGSGAFPFDTIASGCDPRVAPTAQTFNNNLHVFAQKTGGEIVWGVAPHGGKWSLKVLGTS*
Ga0182024_121521191	3300014501	Permafrost	MLLKGAFTRIAPRSSKENETMLCSIIADGKLHIFQVTATGDLVHGSHAAGTGAFPFDTVTNDCDPKVVPTAQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK*
Ga0181525_101710832	3300014654	Bog	YSKENERMLCSIIANGNLHVFQVTTTGDLVHGSHAAGTGAFPFDTVTSDCDPKVVPTAQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK*
Ga0181525_105497961	3300014654	Bog	MLSSIIADGNLHVFQVTATGDLVHGSHAAGTGAFPFETVTNDCDTKVVPTTQIFNNNLHVFAQKTSGDVVWGVKPHGGKWDVKILGK*
Ga0181525_108882541	3300014654	Bog	MLTSIISNGDLHIFSVTGTGDLVHGSHAAGTGAFPLDTIVSGCDPHVAPTAQTFNNNLHVFAQKTSGEIVWGVAPHGGKWDVKVLGA*
Ga0181522_101016573	3300014657	Bog	LVHGSHAAGTGAFPLDTIVSGCDPHVAPTAQTFNNNLHVFAQKTSGEIVWGVAPHGGKWDVKVLGA*
Ga0181519_102642541	3300014658	Bog	MLAFGAFIRSRAGYPEETYNMLCSIIADGDLHVFQVTETGDLVHGSHAAGTGAFPFETVTNGCDAKVVPTAQIFNNNLHVFAQKVDGGIVWGVAPHGGKWEVKALGH*
Ga0181519_104741541	3300014658	Bog	MLCSIIADGNLHIFQVTASGDLVHGSHAAGTGAFPFDTVTNDCDPRVVPTAQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGN*
Ga0182030_100013746	3300014838	Bog	MLCSIIADGNLHIFQVTASGNLVHGSHAAGTGAFPFDTVTNDCDPKVVPTAQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK*
Ga0182030_101307632	3300014838	Bog	MLTSIISNGDLHVFSVTGTGDLVHGSHAAGAGAFPFDTIVSGCDPHVAPTAQTFNNNLHVFAQKTSGEIVWGVAPHGGKWDVKVLGA*
Ga0187879_101804222	3300017946	Peatland	MLCPIIADGNLHIFQVTASGDLVHGSHAAGTGAFPFDTVTNDCDPRVVPTAQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK
Ga0187879_104997881	3300017946	Peatland	RMLCSIIANGNLHIFQVTATGDLVHGSHAAGTGAFPFDTVTNDCDPKVVPTAQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK
Ga0187847_103692332	3300017948	Peatland	MLCSIIANGNLHVFQVTTTGDLVHGSHAAGTGAFPFDTVTNDCDPKVVPTAQIFNNNLHVFAQKTNGDVVWGVAPHGGKWDVKVLGK
Ga0187847_106106762	3300017948	Peatland	GAFTRIAPRSSKENENMLCSIIADGKLHVFQVTATGDLVHGSHAAGTGAFPFDTVTNDCDPKVVPTAEIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK
Ga0187888_13751511	3300018008	Peatland	EGNERMLCSIIANGNLHIFQVTATGDLVHGSHAAGTGAFPFDTITNDCDAKVVPTAQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK
Ga0187884_104318582	3300018009	Peatland	MLCSIIANGNLHIFQVTATGDLVHGSHAAGTGAFPFDTVTNDCDPKVVPTAQIFNNNLHVFAQKTSGDLVWGVAPHGGKWDVKVLGK
Ga0187880_10571052	3300018016	Peatland	MLCSIIANGNLHIFQVTATGDLVHGSHAAGTGAFPFDTVTNDCDPKVVPTAQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK
Ga0187872_101932502	3300018017	Peatland	MLCSIIANGNLHIFQVTATGDLVHGSHAAGTGAFPFDTITNDCDAKVVPTAQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK
Ga0187867_100952622	3300018033	Peatland	MLCSIIADGNLHIFQVTASGDLVHGSHAAGTGAFPFDTVTNDCDPRVVPTAQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK
Ga0187875_104977642	3300018035	Peatland	MLCSIIADGNLHIFQVTATGDLVHGSHAAGTGAFPFDTVTNDCDPKVVPTAQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK
Ga0187883_104270041	3300018037	Peatland	FTRIAPCSSKENENMLCSIIADGNLHIFQVTASGDLVHGSHAAGTGAFPFDTVTNDCDPRVVPTAQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK
Ga0210388_103177802	3300021181	Soil	SKENEDMLCSIIADGNLHVFQVTATGDLVHGSHAAGTGAFPFETVTNDCDPKVVPTTQIFNNNLHVFAEKTSGDVVWGVKPHGGKWDVKVLGK
Ga0224558_11477722	3300023090	Soil	MLCSIIANGNLHIFQVTATGDLVHGSHAAGTGAFPFDTITNDCDPKVVPTAQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVRVLGK
Ga0224557_12717011	3300023101	Soil	MLTSIISNGDLHVFQVTGTGDLVHGSHAAGTGAFPLDPIVSGCDPHVAPTAQTFNNNLHVFAQKTSGEIIWGVAPQGGKWAIKVLGA
Ga0209910_100370751	3300027803	Thawing Permafrost	VSYTHLDVYKRQMLHPGVFNRIAPRYSKENERMLCSIIANGNLHVFQVTTTGDLVHGSHAAGTGAFPFDTVTSDCDPKVVPTAQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK
Ga0209006_104837302	3300027908	Forest Soil	MLCSIIANGNLHIFQVTATGDLVHGSHAAGTGAFPFETVTNDCDPKVVPTTQIFNNNLHVFAEKTSGDVVWGVKPHGGKWEVKVLGK
Ga0302219_102203842	3300028747	Palsa	MICSLVFNGNLHVFQVTTNGDLVHGSHAPGAGAFPLDTVTNGCDPKVAPTAEAFNNNLHVFAQKNSGEIVWGVAPHGGKWNVKTLGS
Ga0302224_101419792	3300028759	Palsa	MICSLVFNGNLHVFQVTTNGDLVHGSHAPGAGAFPLDTVTNGCDPKVAPTAEAFNNNLHVFAQKNSGEIVWGVAPHGGKWNVRTLGS
Ga0302198_105128051	3300028765	Bog	IAPRYSKENERMLCSIIANGNLHVFQVTTTGDLVHGSHAAGTGAFPFDTVTSDCDPKVVPTAQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK
Ga0302234_100358111	3300028773	Palsa	MICSLVFNGNLHVFQVTTNGDLKHGSHAAGAGAFPFDTITSGCDPKVAPTMESFNNNLHVFAQKNSGEIVWGVAPHGGKWNVKTLGS
Ga0302234_104597521	3300028773	Palsa	MLCSIIANGNLHVFSVTTTGDLVHGSHAAGTGAFPFDTVTNDCDPKVVPTAQIFNNNLHVFAQKTAGDIVWAVAPHGGKWDVKILGQ
Ga0302234_104873611	3300028773	Palsa	MLCSIIANGNLHVFQVTPTGALVHGSHAAGTGAFPFETVTNDCDPKVVPTAEVFNNNLHVFAQKTAGDIVWGVAPHGG
Ga0302231_100763943	3300028775	Palsa	MICSLVFNGNLHVFQVTTNGDLVHGSHAPGAGAFPLDTVTNGCDPKVAPTAEAFNNKLHVFAQKNSGEIVWGVAPHGGKWNVKTLGS
Ga0302222_102453231	3300028798	Palsa	VTTNGDLVHGSHAPGAGAFPLDTVTNGCDPKVAPTAEAFNNNLHVFAQKNSGEIVWGVAPHGGKWNVKTLGS
Ga0302229_102287902	3300028879	Palsa	MLCSIIADGNLHIFQVTATGNLVHGSHAAGVGAFPFDTVTNDCDPKVAPTAQVFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGN
Ga0311368_103243252	3300029882	Palsa	MLCSIVANGNLHVFQVTATGDLMHRSHAAGTGNFPSDTITSDCDPKVAPTAEIFNNNLHVFAQKTNGQIVWGLIPHGGKVEVKVLDS
Ga0311369_105225341	3300029910	Palsa	MLCSIIADGNLHIFQVTATGDLVHGSHAAGTGAFPFDTVTNDCDPKVVPTAQIFNNNLHVFAQKTNGDVVWGVAPHGGKWDVKVLGK
Ga0311340_104232992	3300029943	Palsa	PDPSTFVDREAGVDRRRPLRCAMLPHGAFTRMRPRSSKENENMLCSIIADGKLHIFQVTATGDLVHGSHAAGTGAFPFETVTNDCDPKVVPTTQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK
Ga0311340_107513921	3300029943	Palsa	MLTSILANGNLHVFGVTGSGDLVHGSHAPGTGAFPLDTITGGCDPQIAPTAQVFNNNLHVFAQKTDGQIVWGLAPHGGKWSVKALGT
Ga0311371_119359102	3300029951	Palsa	MLCSIVADGNLHVFQVTSAGDLVHRSHAAGAGNFPSETITSGCDPKVAPTAEIFNNNLHVFAQTTSGEIVWGLIPHGGKAQVKVLGN
Ga0311371_121641922	3300029951	Palsa	MLCSIIADGNLHIFQVTTGGDLVHGSHAAGTGAFPFDTVTNDCDPKVAPTAEIFNNNLHVFAQKTDGEVVWGIASPHGGKWDVKVPGK
Ga0311346_103739711	3300029952	Bog	MLHPGVFNRIAPRYSKENERMLCSIIANGNLHVFQVTTTGDLVHGSHAAGTGAFPFDTVTSDCDPKVVPTAQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK
Ga0311339_100455188	3300029999	Palsa	MLCSIIANGNLHVFQVTPTGALVHGSHAAGTGAFPFETVTNDCDPKVVPTAEVFNNNLHVFAQKTAGDIVWGVAPHGGKWDVKTLGK
Ga0311339_101709872	3300029999	Palsa	MLTSIISNGDLHVFQVTAAGDLVHGSHAPGTGAFPLDTITSGCDPRVVPTAQIFNNNLHVFAQKTSGEIIWGVAPHGGKWAIKVLGA
Ga0311339_103479881	3300029999	Palsa	SIIAEGKLHIFQVTATGDLVHGSHAAGTGAFPFETVTNDCDPKVVPTTQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK
Ga0311339_110969141	3300029999	Palsa	MLCSIIANGNLHIFQVTAAGDLVHGSHAAGTGAFPFDTITNGCDPKVVPTAQIFNNNLHVFAQKTEGDIVWGV
Ga0311338_103923402	3300030007	Palsa	MLCSIIADGKLHIFQVTATGDLVHGSHAAGTGAFPFETVTNDCDPKVVPTTQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK
Ga0311338_110141002	3300030007	Palsa	MICSLVFNGNLHVFQVTTNGDLKHGSHAAGAGAFPFDTITNGCDPEVAPTAETFNNNLHVFAQKASGEIVWAVAPHGGKWDVKSLGA
Ga0302179_100156865	3300030058	Palsa	QVTTNGDLVHGSHAPGAGAFPLDTVTNGCDPKVAPTAEAFNNNLHVFAQKNSGEIVWGVAPHGGKWNVKTLGS
Ga0311353_100238275	3300030399	Palsa	MLHAARSNLTTAACPPAAKEIDAMICSLVFNGNLHVFQVTTNGDLVHGSHAPGAGAFPLDTVTNGCDPKVAPTAEAFNNKLHVFAQKNSGEIVWGVAPHGGKWNVKTLGS
Ga0311353_110506962	3300030399	Palsa	NLHIFQVTATGNLVHGSHAAGVGAFPFDTVTNDCDPKVAPTAQVFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGN
Ga0311370_102814833	3300030503	Palsa	MICSLVFNGNLHVFQVTTSGDLVHGTHAAGAGAFPFDTITSGCDPKVAPTTESFNNNLHVFAQKASGEIVWAVAPHGGKWDVKSLGA
Ga0311370_111026742	3300030503	Palsa	ENERMLCSIIADGNLHIFQVTTGGDLVHGSHAAGTGAFPFDTVTNDCDPKVAPTAEIFNNNLHVFAQKTDGEVVWGIASPHGGKWDVKVPGK
Ga0311370_112062521	3300030503	Palsa	MLCSIIANGNLHVFQVTTTGDLVHGSHAAGTGAFPFDTVTNDCDPKVVPTAQIFNNNLHVFAQKTNGDVVWGVAPHGGKWDVK
Ga0311370_118120061	3300030503	Palsa	HVFQVTPTGALVHGSHAAGTGAFPFETVTNDCDPKVVPTAEDFNNNLHVFAQKTAGDIVWGVAPHGGKWDVKTLGK
Ga0311370_122910211	3300030503	Palsa	MLCSIVANGDIHIFQVTTTGDLVHGSHAAGTGAFPFDTVTNDCDPKVAPTAQVFNNNLHVFAQKTAGDIVWGVAPHGGKWDVMVLGK
Ga0311372_120675771	3300030520	Palsa	NANLHIFQVTKTGDLVHGSHAAGTGAFPFDTITNDCDPTVVPTAQIFNNNLHVFAQKTGGDIVWAVAPHGGKWDVKDLGK
Ga0311357_110140631	3300030524	Palsa	MLCSIIADGKLHIFQVTATGDLVHGSHAAGTGAFPFETVTNDCDPKVVPTTQIFNNNLHVFAQKTSGDVVW
Ga0311357_113378212	3300030524	Palsa	MICSLVFNGNLHVFQVTTNGDLKHGSHAAGAGAFPFDTITNGCDPKVAPTAETFNNNLHVFAQKASGEIVWAVAPHGGKWDVKSLGA
Ga0311355_103534441	3300030580	Palsa	SIIANGNLHVFQVTPTGALVHGSHAAGTGAFPFETVTNDCDPKVVPTAEVFNNNLHVFAQKTAGDIVWGVAPHGGKWDVKTLGK
Ga0311355_113942372	3300030580	Palsa	MLSSLVFNDNLHVFAVAENGDLVHGSHAAGTGAFPVDTITTGCDPKVAPSAETFNNNLHVFAQRATGEIVWGVAPHGGAKWTVKNLGA
Ga0311345_106609352	3300030688	Bog	MLCSIIANGNLHVFQVTTTGDLVHGSHAAGTGAFPFDTVTSDCDPKVVPTAQIFNNNLHVFAQKTSGDVVWGVAPHGGKWDVKVLGK
Ga0302311_105918471	3300030739	Palsa	LHVFSVTTTGDLVHGSHAAGTGAFPFDTVTNDCDPKVVPTAQIFNNNLHVFAQKTAGDIVWAVAPHGGKWDVKILGQ
Ga0302314_109090411	3300030906	Palsa	SNLTTAACPPAAKEIDAMICSLVFNGNLHVFQVTTNGDLVHGSHAPGAGAFPLDTVTNGCDPKVAPTAEAFNNNLHVFAQKNSGEIVWGVAPHGGKWNVKTLGS
Ga0302180_105626131	3300031028	Palsa	IISNGDLHVFQVTAAGDLVHGSHAPGTGAFPLDTITSGCDPRVVPTAQIFNNNLHVFAQKTSGEIIWGVAPHGGKWAIKVLGA
Ga0302307_106954621	3300031233	Palsa	GNLHVFQVTTSGDLVHGTHAAGAGAFPFDTITSGCDPKVAPTTESFNNNLHVFAQKASGEIVWAVAPHGGKWDVKSLGA
Ga0302325_100878664	3300031234	Palsa	MRSEETEVLICSLVFNGNLHVFQVTTSGDLVHGTHAAGAGAFPFDTITSGCDPKVAPTTESFNNNLHVFAQKASGEIVWAVAPHGGKWDVKSLGA
Ga0302325_106668122	3300031234	Palsa	MLCSIIADGNLHIFQVTATGDLVHGSHAAGTGAFPFDTVTNDCDPKIVPTTQIFNNNLHVFAQKTSGDVVWGVASHGGKWDVKVLGK
Ga0302325_111205992	3300031234	Palsa	MLHAARSNQSMTAKEIDAMICSLVFNGNLHVFGVTTNGDLVHGSHAPGAGAFPLETITDGCDPKVAPTAESFNNNLHVFAQKDSGEIVWGLAPHGGKWSVKTLGS
Ga0302324_1005539831	3300031236	Palsa	GNLHVFQVTTTGDLVHGSHAAGTGAFPFDTVTNDCDPKVVPTAQIFNNNLHVFAQKTNGDVVWGVAPHGGKWDVKVLGK
Ga0302324_1006274571	3300031236	Palsa	GNLHVFQVTSAGDLVHRSHAAGAGNFPSETITSGCDPKVAPTAEIFNNNLHVFAQTTSGEIVWGLIPHGGKAQVKVLGN
Ga0302326_121277642	3300031525	Palsa	TMLCSIIADGNLHIFQVTATGDLVHGSHAAGTGAFPFDTVTNDCDPKIVPTTQIFNNNLHVFAQKTSGDVVWGVASHGGKWDVKVLGK
Ga0310686_1001176692	3300031708	Soil	MLCSIIANGNLHVFSVTTTGDLVHGSHAAGTGAFPFDTVTNDCDPKVVPTAQIFNNNLHVFAQKTAGDIVWAVAPHGGKWDVKILGK
Ga0310686_1074489921	3300031708	Soil	KENENMPCSIIANGNLHVFQVTAAGDLVHGSHAAGSGAFPFETISNGCDPKVDPTAQVFNNNLHVFAQKAEGDIIWGVAPHGGKWDVKVLGK
Ga0310686_1086736662	3300031708	Soil	MLCSIIADGKLHIFQVTATGDLVHGSHAAGTGAFPFETVTNDCDPKVVPTTQIFNNNLHVFAQKTSGEVVWGVAPHGGKWDVKVLGK
Ga0310686_1117924921	3300031708	Soil	MLCSIIANGNLHIFQVTAAGDLVHGSHAAGTGAFPFETITNGCDPRVIPTAEIFNNNLHVFAQKTEGDIVWGVGPHGGKWDVKILGK
Ga0310686_1132022141	3300031708	Soil	MLCSIIANGNLHIFQVTEAGNLVHGSHAAGTGAFPFETIANGCDPKIVPTAQIFNNNLHVFAQKTEGDIVWSVGPHGGKWDVKVLGK
Ga0310686_1141178202	3300031708	Soil	MLCSIIANGNLHIFQVTAAGDLVHGSHAAGAGAFPLETITNGCDPKVVPTAQIFNNNLHVFAQKTEGDIVWGVAPHGGKWDVKILGK
Ga0310686_1166418822	3300031708	Soil	MLCSIVADGNLHVFQVTEAGDLVHRSHAAGTGNFPSEALTTGCDPKVAPTAEIFNNNLHVFAQTTSGEIVWGLLVHGGKPQIKVLGN
Ga0316036_1146821	3300031871	Soil	MLCSIIADGKLHIFPVTATGDLVHGSHAAGTGAFPFETVTNDCDPKVVPTTQIFNNNLHVFAQKTSGEVVWGVAPHGGKWDVKVLGK
Ga0348332_131498041	3300032515	Plant Litter	PNAPRSSKENEDMLCSIIADGKLHIFQVTATGDLVHGSHAAGTGAFPFETVTNDCDPKVVPTTQIFNNNLHVFAQKTSGEVVWGVAPHGGKWDVKVLGK
Ga0370483_0102148_706_933	3300034124	Untreated Peat Soil	VFQVTAAGDLVHRSHAAGTGIFPSDTITSDCDPKVAPTAEIFNNNLHVFAQKTSGEIVWGLIPHGGKVEVKVLGS
Ga0370515_0042543_777_1040	3300034163	Untreated Peat Soil	MLCSIVDNGNLHVFQVTAAGDLVHRTHAAGTGNFPSDTITSDCDPKVAPTAEIFNNNLHVFAQKTNGQIVWGLIPHGGKVEVKVLDS
Ga0370515_0044431_895_1182	3300034163	Untreated Peat Soil	MRSEETEVMICSLVFNGNLHVFQVTTSGDLVHGTHAAGAGAFPFDTITSGCDPKVAPTTESFNNNLHVFAQKASGEIVWAVAPHGGKWDVKSLGA
Ga0370515_0050883_29_316	3300034163	Untreated Peat Soil	LPIRRLYEMLCSIVANGNLHVFQVTATGDLMHRSHAAGTGNFPSDTITSDCDPKVAPTAEIFNNNLHVFAQKTNGQIVWGLIPHGGKVEVKVLDS
Ga0370515_0119815_755_1078	3300034163	Untreated Peat Soil	MLHPGAFTRIAPRYSKENERMLCSIIANGNLHVFQVTTTGDLVHGSHAAGTGAFPFDTVTNDCDPKVVPTAQIFNNNLHVFAQKTNGDVVWGVAPHGGKWDVKVLGK
Ga0370514_001831_2_250	3300034199	Untreated Peat Soil	MLCSIVANDNLHVFQVTAAGDLVHRSHAAGTGIFPSDTITSDCDPKVAPTAEIFNNNLHVFAQKTSGEIVWGLIPHGGKVEVK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093780

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences