Metagenome Family F093610

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093610
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	63 residues
Representative Sequence	GKELATLFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSAFAHKINEAAEMLTNELAEATQPAN
Number of Associated Samples	81
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	28.30 %
% of genes from short scaffolds (< 2000 bps)	26.42 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (72.642 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (33.962 % of family members)
Environment Ontology (ENVO)	Unclassified (53.774 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.377 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 74.60% β-sheet: 0.00% Coil/Unstructured: 25.40%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF02830	V4R	58.49
PF06505	XylR_N	1.89
PF01882	DUF58	0.94
PF07726	AAA_3	0.94
PF03952	Enolase_N	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1719	Predicted hydrocarbon binding protein, contains 4VR domain	General function prediction only [R]	58.49
COG0148	Enolase	Carbohydrate transport and metabolism [G]	0.94
COG1721	Uncharacterized conserved protein, DUF58 family, contains vWF domain	Function unknown [S]	0.94

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.64 %
All Organisms	root	All Organisms	27.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.64 %
cellular organisms	root	All Organisms → cellular organisms	27.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.64 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	27.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.64 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.64 %
Candidatus Bathyarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.64 %
unclassified Candidatus Bathyarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.64 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	11.32 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005167\|Ga0066672_10748840	All Organisms → cellular organisms → Archaea	620	Open in IMG/M
3300005167\|Ga0066672_10748841	All Organisms → cellular organisms → Archaea	620	Open in IMG/M
3300005174\|Ga0066680_10220516	All Organisms → cellular organisms → Archaea	1201	Open in IMG/M
3300005174\|Ga0066680_10930483	All Organisms → cellular organisms → Archaea	513	Open in IMG/M
3300005176\|Ga0066679_10849841	All Organisms → cellular organisms → Archaea	579	Open in IMG/M
3300005178\|Ga0066688_10813200	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	583	Open in IMG/M
3300005554\|Ga0066661_10700876	All Organisms → cellular organisms → Archaea	594	Open in IMG/M
3300005586\|Ga0066691_10485195	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	738	Open in IMG/M
3300006794\|Ga0066658_10562098	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	620	Open in IMG/M
3300006806\|Ga0079220_11801910	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	539	Open in IMG/M
3300009012\|Ga0066710_104739691	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	508	Open in IMG/M
3300009088\|Ga0099830_11425027	All Organisms → cellular organisms → Archaea	576	Open in IMG/M
3300009089\|Ga0099828_11144704	All Organisms → cellular organisms → Archaea	691	Open in IMG/M
3300010321\|Ga0134067_10061554	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1228	Open in IMG/M
3300012201\|Ga0137365_10889259	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	650	Open in IMG/M
3300012350\|Ga0137372_10136038	All Organisms → cellular organisms → Archaea	2022	Open in IMG/M
3300012362\|Ga0137361_11285479	All Organisms → cellular organisms → Archaea	656	Open in IMG/M
3300012972\|Ga0134077_10389142	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	600	Open in IMG/M
3300017659\|Ga0134083_10379972	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	613	Open in IMG/M
3300018468\|Ga0066662_10338105	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1288	Open in IMG/M
3300018468\|Ga0066662_12977587	All Organisms → cellular organisms → Archaea	503	Open in IMG/M
3300026306\|Ga0209468_1032555	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1816	Open in IMG/M
3300026313\|Ga0209761_1304099	All Organisms → cellular organisms → Archaea	553	Open in IMG/M
3300026325\|Ga0209152_10039817	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1627	Open in IMG/M
3300026342\|Ga0209057_1221776	All Organisms → cellular organisms → Archaea	537	Open in IMG/M
3300026361\|Ga0257176_1062963	All Organisms → cellular organisms → Archaea	594	Open in IMG/M
3300026536\|Ga0209058_1256650	All Organisms → cellular organisms → Archaea	611	Open in IMG/M
3300031962\|Ga0307479_10054000	Not Available	3868	Open in IMG/M
3300032180\|Ga0307471_103715555	All Organisms → cellular organisms → Archaea	540	Open in IMG/M
3300032180\|Ga0307471_104039661	All Organisms → cellular organisms → Archaea	518	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	98.11%
Loam	Environmental → Terrestrial → Soil → Loam	0.94%
Sand	Environmental → Terrestrial → Soil → Sand	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	45.28%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	45.28%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.60%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	33.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	33.02%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	12.26%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	8.49%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027947	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_40_50 (SPAdes)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_101179281	3300002558	Grasslands Soil	VKVGKELATLFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSAFAHKINEAAEMLVNELAEATQPAN*
JGI25383J37093_100654601	3300002560	Grasslands Soil	KVGKELATLFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSAFAHKINEAAEMLTNELAEATHTAN*
JGI25384J37096_100422953	3300002561	Grasslands Soil	LFKSHFLAAFEFQIDVINNLSRSVFVLDNPNSNFAKKVSEAVENLEKELAGMSAQQSSL*
JGI25382J37095_100889852	3300002562	Grasslands Soil	LFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSAFAHKINEAAEMLVNELAEATQPAN*
JGI25382J43887_100871502	3300002908	Grasslands Soil	LATLFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSGFAHKINEAAEMLTRELAEATQPAN
Ga0066672_107488402	3300005167	Soil	PGVRIKDAVKVGQELSQLFRSRFLQAFEFQLDVINNLSRSVFVVDNPDSSFAKKVGEAVETLERELSGATKIAN*
Ga0066672_107488412	3300005167	Soil	PGVRIKDAVKVGQELSQLFRSRFLQAFEFQLDVINNLSRSVFVVDNPDSAFAKKVGEAVETLERELSGATKIAN*
Ga0066680_102205163	3300005174	Soil	PGVRIKDAVKVGQELSQLFRSRFLQAFEFQLDVINNLSRSVFVVDNPDSSFAKKIGEAVETLERELSGATKIAN*
Ga0066680_109304831	3300005174	Soil	AVKVGKDLAVLFKSHFLAAFEFQIDVINNLSRSVFVLDNPNSNFAKKVSEAVENLEKELAGMSVQQSSL*
Ga0066679_101835741	3300005176	Soil	GKELATLFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSAFAHKINEAAEMLTNELAEATQPAN*
Ga0066679_108498411	3300005176	Soil	RFLQAFEFQLDVINNLSRSVFVIDNPNSAFAKKIVEAVETLERELAGATKIAN*
Ga0066679_109495082	3300005176	Soil	ELATLFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSAFAHKINEAAEMLTNELAEATQPAN*
Ga0066690_102748141	3300005177	Soil	VKVGQELSQLFRSRFLQAFEFQLDVINNLSRSVFVVDNPDSPFAKKIGEAVEILERELSGATKIAN*
Ga0066688_108132001	3300005178	Soil	GKELATLFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSSFAHKINEAAEMLTNELAEATQPAN*
Ga0066685_102698151	3300005180	Soil	KVGQELSQLFRSRFLQAFEFQLDVINNLSRSVFVVDNPDSPFAKKIGEAVETLERELSGATKIAN*
Ga0066685_105316211	3300005180	Soil	KVGKELADLFKSKFLEAFEFQIDVINNLGRSVFILDNPNSTFARKVGDAADYLVRELGEAPKIAN*
Ga0066686_110495062	3300005446	Soil	KSHFLAAFEFQIDVINNLSRSVFVLDNPNSNFAKKVSEAVENLEKELAGMSAQQSSL*
Ga0066689_100131655	3300005447	Soil	IKDAVKVGKELATLFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSAFAHKINEAAEMLVNELAEATQPAN*
Ga0066697_100638211	3300005540	Soil	SQLFRSHFLQAFEFQLDVINNLSRSVFVVDNPDSAFAKKVTEAVDTLERELSGATKIAN*
Ga0066701_102421851	3300005552	Soil	SQLFRSRFLQAFEFQLDVINNLSRSVFVVDNPDSSFAKKVTEAVDTLERELSGATKIAN*
Ga0066661_103936451	3300005554	Soil	LQAFEFQLDVINNLSRSVFVVDNPDSAFAKKVTEAVDTLERELSGATKIAN*
Ga0066661_107008761	3300005554	Soil	LQAFEFQLDVINNLSRSVFVVDNPDSSFAKKVTEAVDTLERELSGATKIAN*
Ga0066704_105443932	3300005557	Soil	LFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSSFAHKINEAAEMLTNELAEATQPAN*
Ga0066698_102259923	3300005558	Soil	KELATLFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSAFAHKINEAAEMLTNELAEATQPAN*
Ga0066698_102994631	3300005558	Soil	RFLQAFEFQMDVINNLSRSVFVIDNPDSGFAHKVTEAADMLTKELEEIPKAAN*
Ga0066698_105848821	3300005558	Soil	KVGQELSQLFRSRFLQAFEFQLDVINNLSRSVFVVDNPDSSFAKKVTEAVDTLERELSGATKIAN*
Ga0066700_103142301	3300005559	Soil	FEFQLDVINNLSRSVFVVDNPDSSFAKKIGEAVETLERELSGATKIAN*
Ga0066708_103242661	3300005576	Soil	KVGKELATLFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSAFAHKINEAAEMLTNELAEATQPAN*
Ga0066691_104851951	3300005586	Soil	GVRIKDAVKVGKELATLFKSRFLQAFEFQMDVINNLSRSVFVVDYPDSGFAHKINEAAEMLINELAEATQPAN*
Ga0066656_108688921	3300006034	Soil	GKELAVLFRSRFLQAFDFQMDVINNLSRSVFVMDNPDSAFAHKVNEAAELLTKELAEAPATAN*
Ga0066658_105620982	3300006794	Soil	LFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSAFAHKINEAAEMLTNELAEATQPAN*
Ga0079220_118019101	3300006806	Agricultural Soil	KELATLFRSHFLQAFEFQIDVINNLSRSVFVVDNPDSPFAHKVSEAVELLTQELAEVPKSAN*
Ga0099791_103887081	3300007255	Vadose Zone Soil	LQAFEFQLDVINNLSRSVFVVDNPDSAFAKKVTEAADTLERELSGATKIAN*
Ga0099794_103383541	3300007265	Vadose Zone Soil	PGVRIKDAIKVGQELSQLFRSRFLQAFEFQLDVINNLSRSVFVVDNPDSSFAKKVTEAVDTLERELSGATKLAN*
Ga0066710_1047396911	3300009012	Grasslands Soil	VKVGKELATLFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSAFAHKINEAAEMLTNELAEATQPAN
Ga0099830_113371961	3300009088	Vadose Zone Soil	DAMKVGKELATLFHSRFLQAFEFQMDVINNLSRSVFVIDNPDSAFAHKVNEAAEMLTRELEEIPKAAN*
Ga0099830_114250272	3300009088	Vadose Zone Soil	ELSQLFRSHFLQAFEFQLDVINNLSRSVFVVDNPDSAFAKKVTEAADTLERELSGATKIAN*
Ga0099828_104803521	3300009089	Vadose Zone Soil	QELSQLFRSRFLQAFEFQLDVINNLSRSVFVVDNPYSSFAKKIGEAVETLERELSGATKIAN*
Ga0099828_104980971	3300009089	Vadose Zone Soil	QAFEFQLDVINNLSRSVFVVDNPDSAFAKKVTEAADTLERELSGATKIAN*
Ga0099828_109797262	3300009089	Vadose Zone Soil	FLQAFEFQLDVINNLSRSVFVVDNPDSSFAKKVTEAVDTLERELSGATKIAN*
Ga0099828_111447041	3300009089	Vadose Zone Soil	PPGVRIKDAVKVGQELSQLFRSHFLQAFEFQLDVINNLSRSVFVVDNPDSAFAKKVTEAADTLERELSGATKIAN*
Ga0099827_105708132	3300009090	Vadose Zone Soil	FRSHFLQAFEFQLDVINNLSRSVFVVDNPDSAFAKKIGEAVETLERELSGATKIAN*
Ga0066709_1045196961	3300009137	Grasslands Soil	VKVGKELATLFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSAFAHKINEAAEMLTNELAEATQPAN*
Ga0126373_108096701	3300010048	Tropical Forest Soil	ATLFKSHFLQAFEFQIDVINNLSRSVFVIDNPDSPFAHKVSEAVELLTKELEEAPKTAN*
Ga0134067_100615542	3300010321	Grasslands Soil	PPGVRIKDAVKVGKELATLFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSAFAHKINEAAEMLTNELAEATQPAN*
Ga0134067_101498091	3300010321	Grasslands Soil	LFRSRFLQAFEFQLDVINNLSRSVFVVDNPDSSFAKKVTEAVDTLERELSGATKIAN*
Ga0134080_100054501	3300010333	Grasslands Soil	KELAVLFRSRFLQAFDFQMDVINNLSRSVFVMDNPDSAFAHKVNEAAELLTKELAEAPATAN*
Ga0126379_103275091	3300010366	Tropical Forest Soil	GKELATLFKSHFLQAFEFQIDVINNLSRSVFVIDNPDSPFAHKVSEAVELLTKELEEAPKTAN*
Ga0126383_115881561	3300010398	Tropical Forest Soil	KFLAAFEFQIDVINNLSRSVFVMDNPNSSFAKKVDEAVGNLEKELNGSS*
Ga0137391_103350191	3300011270	Vadose Zone Soil	LFRSKFLEAFEFQIDVINNLSRSVFVLDHPTSTFARKVGEAADFLVKELGEAPKIAN*
Ga0137391_112935411	3300011270	Vadose Zone Soil	TLFHSRFLQAFEFQMDVINNLSRSVFVIDNPDSAFAHKVNEAAEMLTRELEEIPKAAN*
Ga0137393_108836512	3300011271	Vadose Zone Soil	HSRFLQAFEFQMDVINNLSRSVFVVDNPDSGFAHKINEAAEMLTRELAEEPQPAN*
Ga0137388_102587074	3300012189	Vadose Zone Soil	LQAFEFQLDVINNLSRSVFVVDNPDSAFAKKIGEAVETLERELSGATKIAN*
Ga0137388_107903842	3300012189	Vadose Zone Soil	VRIKDAIKVGQELSQLFRSRFLQAFEFQLDVINNLSRSVFVVDNPDSSFAKKVTEAVDTLERELSGATKIAN*
Ga0137365_107473531	3300012201	Vadose Zone Soil	FRSRFLQAFEFQLDVINNLSRSVFVIDNPDSSFAKKIGEAVETLERELSGATKIAN*
Ga0137365_108892591	3300012201	Vadose Zone Soil	TLFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSGFAHKINEAAEMLINELAEVTQPAN*
Ga0137362_107538731	3300012205	Vadose Zone Soil	DAVKVGRELATLFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSAFAHKINEAAEMLVNELAEVTQPAN*
Ga0137380_109043261	3300012206	Vadose Zone Soil	VKVGQELSQLFRSHFLQAFEFQLDVINNLSRSVFVVDNPDSPFAKKVTEAADILERELSGATKIAN*
Ga0137381_109183432	3300012207	Vadose Zone Soil	ELADLFKSKFLEAFEFQIDVINNLSRSVFVLDHPNSTFARKVGDAADFLVKELGEAPRIAN*
Ga0137379_104685833	3300012209	Vadose Zone Soil	VKVGQELSQLFRSHFLQAFEFQLDVINNLSRSVFVVDNPDSAFAKKVTEAADILERELSGATKIAN*
Ga0137378_105059621	3300012210	Vadose Zone Soil	GKELATLFRSRFLQAFDFQMDVINNLSRSVFVIDNPDSAFAHKVNEAAELLTKELAEVPATAN*
Ga0137387_100911321	3300012349	Vadose Zone Soil	GQELSQLFRSHFLQAFEFQLDVINNLSRSVFVVDNPDSAFAKKVTEAVDTLERELSGATKIAN*
Ga0137387_101511191	3300012349	Vadose Zone Soil	VKVGQELSQLFRSRFLQAFEFQLDVINNLSRSVFVVDNPDSSFAKKIGEAVETLERELSGATKIAN*
Ga0137387_113266511	3300012349	Vadose Zone Soil	KELAILFKSRFLQAFEFQMDVINNLSRSVFVIDNPDSAFAHKVNEAAEMLTKELEEIPKAAN*
Ga0137372_101360381	3300012350	Vadose Zone Soil	DAVKVGKELATLFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSAFAHKINEAAEMLTNELAEATQPAN*
Ga0137386_110640991	3300012351	Vadose Zone Soil	KVGQELSQLFRSHFLQAFEFQLDVINNLSRSVFVVDNPDSPFAKKVTEAADILERELSGATKIAN*
Ga0137369_108925282	3300012355	Vadose Zone Soil	AVKVGKELAMLFRSRFLQAFDFQMDVINNLSRSVFVMDNPDSAFAHKVNEAVELLMQELKEVPDSAN*
Ga0137384_113821031	3300012357	Vadose Zone Soil	ADLFRSKFLEAFEFQIDVINNLSRSVFVLEHPNSTFARKVGEAADFLVKELGEAPKIAN*
Ga0137361_112854792	3300012362	Vadose Zone Soil	GVRIKDAVKVGQELSQLFRSHFLQAFEFQLDVINNLSRSVFVVDNPDSAFAKKVTEAVDTLERELSGATKIAN*
Ga0137390_101980284	3300012363	Vadose Zone Soil	LFRSHFLQAFEFQLDVINNLSRSVFVVDNPDSAFAKKVTEAVDTLERELSGATKIAN*
Ga0137390_104402162	3300012363	Vadose Zone Soil	LQAFEFQMDVINNLSRSVFVIDNPDSAFAHKVNEAAEMLTKELEEIPKAAN*
Ga0137395_108273201	3300012917	Vadose Zone Soil	DAVKVGKELATLFKSRFLQAFEFQMDVINNLSRSVFVIDNPDSGFAHKVTEAAEMLTKELEEIPKAAN*
Ga0137419_119451531	3300012925	Vadose Zone Soil	RSHFLQAFEFQLDVINNLSRSVFVVDNPDSAFAKKVTEAVDTLERELSGATKIAN*
Ga0134077_1000012615	3300012972	Grasslands Soil	GKDLAVLFKSHFLAAFEFQIDVINNLSRSVFVLDNPNSNFAKKVSEAVENLEKELAGMSVQQSSL*
Ga0134077_103891422	3300012972	Grasslands Soil	VPPGVRIKDAMKVGKELATLFKSRFLQAFEFQMDVINNLSRSVFVIDNPDSAFAHKVNEAAEMLTKELEEIPKAAN*
Ga0134087_104536751	3300012977	Grasslands Soil	RLKDAVKVGKELAVLFRSRFLQAFDFQIDVINNLSRSVFVMDNPDSAFAHKVNEAAELLTKELAEAPATAN*
Ga0134078_101046051	3300014157	Grasslands Soil	VRLKDAVKVGKELAVLFRSRFLQAFDFQIDVINNLSRSVFVIDNPDSAFAHKVNEAVELLTKELAEVPATAN*
Ga0134085_106049571	3300015359	Grasslands Soil	AIKVGQELSQLFRSRFLQAFEFQLDVINNLSRSVFVIDNPDSSFAKKIGEAVETLERELSGATKIAN*
Ga0134083_103799722	3300017659	Grasslands Soil	VPPGVRIKDAVKVGKELATLFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSAFAHKINEAAEMLTNELAEATHTAN
Ga0066662_103381052	3300018468	Grasslands Soil	PGVRIKDAVKVGKELATLFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSAFAHKINEAAEMLTNELAEATQPAN
Ga0066662_129775871	3300018468	Grasslands Soil	DAVKVGKDLAVLFKSHFLAAFEFQIDVINNLSRSVFVLDNPNSNFAKKVSEAVENLEKELAGMSAQQSSL
Ga0137417_11672491	3300024330	Vadose Zone Soil	RIKDAMKVGKELATLFHSRFLQAFEFQMDVINNLSRSVFVIDNPDSAFAHKVNEAAEMLTRELEEIPKAAN
Ga0209350_10344371	3300026277	Grasslands Soil	FLQAFEFQMDVINNLSRSVFVVDNPDSSFAHKINEAAEMLTNELAEATQPAN
Ga0209237_11624652	3300026297	Grasslands Soil	GVRIKDAVKVGKELATLFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSAFAHKINEAAEMLTNELAEATHPAN
Ga0209236_11942941	3300026298	Grasslands Soil	AIKVGQELSQLFRSRFLQAFEFQLDVINNLSRSVFVVDNPDSSFAKKVTEAVDTLERELSGATKIAN
Ga0209468_10325553	3300026306	Soil	VPPGVRLKDAVKVGKELAVLFRSRFLQAFDFQMDVINNLSRSVFVMDNPDSAFAHKVNEAAELLTKELAEAPATAN
Ga0209761_13040991	3300026313	Grasslands Soil	GRELAQLFRSKFLAAFEFQMDVINNLSRSVFVVDNPNSTFAHKVSGAAENLIRELGEAAKVAN
Ga0209686_11738491	3300026315	Soil	GVRIKDAVKVGKELATLFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSAFAHKINEAAEMLTNELAEATQPAN
Ga0209152_100398172	3300026325	Soil	VPPGVRIKDAVKVGKELATLFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSAFAHKINEAAEMLTNELAEATQPAN
Ga0209267_11984962	3300026331	Soil	GQELSQLFRSRFLQAFEFQLDVINNLSRSVFVVDNPDSSFAKKIGEAVETLERELSGATKIAN
Ga0209804_12171872	3300026335	Soil	FLQAFEFQMDVINNLSRSVFVVDNPDSAFAHKINEAAEMLTNELAEATQPAN
Ga0209057_11846052	3300026342	Soil	LFHSRFLQAFEFQMDVINNLSRSVFVIDNPDSGFAHKVTEAADMLTKELEEIPKAAN
Ga0209057_12217762	3300026342	Soil	SQLFRSHFLQAFEFQLDVINNLSRSVFVVDNPDSAFAKKVTEAVDTLERELSGATKIAN
Ga0257176_10629632	3300026361	Soil	KVGQELSQLFRSRFLQAFEFQLDVINNLSRSVFVVDNPDSSFAKKVTEAVDTLERELSGATKIAN
Ga0257181_10148742	3300026499	Soil	MKVGKELATLFHSRFLQAFEFQMDVINNLSRSVFVIDNPDSAFAHKVNEAAEMLTRELEEIPKAAN
Ga0209806_10058419	3300026529	Soil	GKDLAVLFKSHFLAAFEFQIDVINNLSRSVFVLDNPNSNFAKKVSEAVENLERELAGMSAQQSSL
Ga0209806_10866931	3300026529	Soil	TLFKSRFLQAFEFQMDVINNLSRSVFVVDNPDSSFAHKINEAAEMLTNELAEATQPAN
Ga0209058_12566502	3300026536	Soil	LFRSRFLQAFEFQLDVINNLSRSVFVVDNPDSPFAKKIGEAVETLERELSGATKIAN
Ga0209588_11570882	3300027671	Vadose Zone Soil	IKVGQELSQLFRSRFLQAFEFQLDVINNLSRSVFVVDNPDSSFAKKVTEAVDTLERELSGATKIAN
Ga0209180_106175731	3300027846	Vadose Zone Soil	KVGKELATLFHSRFLQAFEFQMDVINNLSRSVFVIDNPDSAFAHKVNEAAEMLTKELEEIPKAAN
Ga0209868_10123141	3300027947	Groundwater Sand	AVKVGRELAQLFRSRFLEAFEFQLDVINNLSRSVFVLDQPNSSFAKKISEAAENLTRQIGEIGETPKVAN
Ga0307479_100540006	3300031962	Hardwood Forest Soil	ATLFKSRFLQAFEFQMDVINNLSRSVFVIDNPDSAFAHKVSEAAEMLTNELREAPRAAN
Ga0307471_1006922341	3300032180	Hardwood Forest Soil	LFKSRFLQAFEFQMDVINNLSRSVFVIDNPDSAFAHKVREAAEMLTNELTEAPKPAN
Ga0307471_1037155552	3300032180	Hardwood Forest Soil	VKVGQELSQLFRSHFLQAFEFQLDVINNLSRSVFVVDNPDSAFAKKVTEAVDTLERELSGATKIAN
Ga0307471_1040396611	3300032180	Hardwood Forest Soil	PGVRIKDAMKVGQELSQLFRSHFLQAFEFQLDVINNLSRSVFVVDNPDSPFAKKVTEAVDTLERELSGATKIAS
Ga0307472_1010754382	3300032205	Hardwood Forest Soil	VGKELATLFKSHFLQAFEFQMDVINNLSRSVFVIDNPDSSFAHKVTEAAEMLTNELREAPASAN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F093610

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences