Metagenome / Metatranscriptome Family F093591

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093591
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	57 residues
Representative Sequence	LIVDSYRFLPRSFRPLYEGRGPFPGEEAPVWAPFEKRLQASRIALLTSAG
Number of Associated Samples	99
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	58.00 %
% of genes near scaffold ends (potentially truncated)	90.57 %
% of genes from short scaffolds (< 2000 bps)	90.57 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (89.623 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (19.811 % of family members)
Environment Ontology (ENVO)	Unclassified (34.906 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.547 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.33% β-sheet: 0.00% Coil/Unstructured: 66.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF02567	PhzC-PhzF	58.49
PF03061	4HBT	8.49
PF07110	EthD	7.55
PF12697	Abhydrolase_6	4.72
PF16864	Dimerisation2	1.89
PF01810	LysE	1.89
PF13606	Ank_3	0.94
PF13480	Acetyltransf_6	0.94
PF03712	Cu2_monoox_C	0.94
PF13560	HTH_31	0.94
PF13193	AMP-binding_C	0.94
PF00583	Acetyltransf_1	0.94
PF14534	DUF4440	0.94
PF12704	MacB_PCD	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0384	Predicted epimerase YddE/YHI9, PhzF superfamily	General function prediction only [R]	58.49

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.62 %
Unclassified	root	N/A	10.38 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.62 %
Unclassified	root	N/A	10.38 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.62 %
Unclassified	root	N/A	10.38 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	53.77 %
Unclassified	root	N/A	10.38 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	46.23 %
Unclassified	root	N/A	10.38 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.89 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	42.45 %
Unclassified	root	N/A	10.38 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.94 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.94 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	42.45 %
Unclassified	root	N/A	10.38 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.94 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.94 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	42.45 %
Unclassified	root	N/A	10.38 %
Phenylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium	0.94 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.94 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	42.45 %
Unclassified	root	N/A	10.38 %
unclassified Phenylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium	0.94 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.94 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	42.45 %
Unclassified	root	N/A	10.38 %
Phenylobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp.	0.94 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090008\|P3_DRAFT_NODE_390405_len_1803_cov_14_234609	All Organisms → cellular organisms → Bacteria	1853	Open in IMG/M
3300001333\|A21PFW6_1207338	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300001334\|A2165W6_1028901	All Organisms → cellular organisms → Bacteria	1927	Open in IMG/M
3300001661\|JGI12053J15887_10299992	Not Available	786	Open in IMG/M
3300002914\|JGI25617J43924_10196523	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300005171\|Ga0066677_10244012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1018	Open in IMG/M
3300005174\|Ga0066680_10346748	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300005174\|Ga0066680_10527695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	742	Open in IMG/M
3300005176\|Ga0066679_10861633	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300005406\|Ga0070703_10397318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	599	Open in IMG/M
3300005445\|Ga0070708_100573122	All Organisms → cellular organisms → Bacteria	1064	Open in IMG/M
3300005450\|Ga0066682_10769568	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300005471\|Ga0070698_101204429	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300005471\|Ga0070698_102196476	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300005555\|Ga0066692_10079348	All Organisms → cellular organisms → Bacteria	1901	Open in IMG/M
3300005556\|Ga0066707_10116033	All Organisms → cellular organisms → Bacteria	1663	Open in IMG/M
3300005563\|Ga0068855_101861827	Not Available	610	Open in IMG/M
3300005566\|Ga0066693_10118091	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300005568\|Ga0066703_10723849	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300005586\|Ga0066691_10330447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	901	Open in IMG/M
3300006028\|Ga0070717_11369620	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300006034\|Ga0066656_10984442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	541	Open in IMG/M
3300006796\|Ga0066665_10439192	All Organisms → cellular organisms → Bacteria	1078	Open in IMG/M
3300006797\|Ga0066659_11696253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	533	Open in IMG/M
3300006800\|Ga0066660_11499200	All Organisms → cellular organisms → Bacteria → Terrabacteria group	531	Open in IMG/M
3300006806\|Ga0079220_10254186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1054	Open in IMG/M
3300006852\|Ga0075433_11047564	All Organisms → cellular organisms → Bacteria → Terrabacteria group	710	Open in IMG/M
3300006903\|Ga0075426_11100968	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300006914\|Ga0075436_100389579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1008	Open in IMG/M
3300009038\|Ga0099829_10752552	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300009088\|Ga0099830_11232924	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300009651\|Ga0105859_1070379	All Organisms → cellular organisms → Bacteria → Terrabacteria group	910	Open in IMG/M
3300010142\|Ga0127483_1213388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	502	Open in IMG/M
3300010303\|Ga0134082_10345981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	629	Open in IMG/M
3300010304\|Ga0134088_10170803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1037	Open in IMG/M
3300010320\|Ga0134109_10292802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	625	Open in IMG/M
3300010336\|Ga0134071_10169168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1069	Open in IMG/M
3300010337\|Ga0134062_10459012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	634	Open in IMG/M
3300010358\|Ga0126370_10287061	All Organisms → cellular organisms → Bacteria	1297	Open in IMG/M
3300010398\|Ga0126383_12648495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	585	Open in IMG/M
3300011270\|Ga0137391_10663275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	869	Open in IMG/M
3300012014\|Ga0120159_1054303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1252	Open in IMG/M
3300012096\|Ga0137389_11298342	All Organisms → cellular organisms → Bacteria → Terrabacteria group	621	Open in IMG/M
3300012180\|Ga0153974_1059585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	842	Open in IMG/M
3300012199\|Ga0137383_10591883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	811	Open in IMG/M
3300012206\|Ga0137380_10839906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	791	Open in IMG/M
3300012209\|Ga0137379_10588624	All Organisms → cellular organisms → Bacteria	1019	Open in IMG/M
3300012211\|Ga0137377_10800837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	875	Open in IMG/M
3300012349\|Ga0137387_10287543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1188	Open in IMG/M
3300012359\|Ga0137385_11544445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	528	Open in IMG/M
3300012363\|Ga0137390_10216644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1901	Open in IMG/M
3300012363\|Ga0137390_10528545	All Organisms → cellular organisms → Bacteria	1151	Open in IMG/M
3300012363\|Ga0137390_11054977	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300012363\|Ga0137390_11606456	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300012392\|Ga0134043_1032113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	750	Open in IMG/M
3300012960\|Ga0164301_10176266	All Organisms → cellular organisms → Bacteria	1337	Open in IMG/M
3300012977\|Ga0134087_10081698	All Organisms → cellular organisms → Bacteria	1326	Open in IMG/M
3300012986\|Ga0164304_10569510	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300013758\|Ga0120147_1080806	Not Available	554	Open in IMG/M
3300013763\|Ga0120179_1005349	All Organisms → cellular organisms → Bacteria	3608	Open in IMG/M
3300015241\|Ga0137418_11177623	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300016371\|Ga0182034_11409703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp.	609	Open in IMG/M
3300017993\|Ga0187823_10326255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	540	Open in IMG/M
3300018468\|Ga0066662_11154585	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300018481\|Ga0190271_13739941	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300018482\|Ga0066669_10281625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1336	Open in IMG/M
3300018482\|Ga0066669_11461811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	620	Open in IMG/M
3300020004\|Ga0193755_1133267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	767	Open in IMG/M
3300022691\|Ga0248483_170804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	799	Open in IMG/M
3300024323\|Ga0247666_1109735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	548	Open in IMG/M
3300025922\|Ga0207646_10034127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4598	Open in IMG/M
3300026296\|Ga0209235_1067061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1651	Open in IMG/M
3300026297\|Ga0209237_1042322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2371	Open in IMG/M
3300026301\|Ga0209238_1193545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	596	Open in IMG/M
3300026307\|Ga0209469_1050127	All Organisms → cellular organisms → Bacteria	1319	Open in IMG/M
3300026310\|Ga0209239_1306153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	550	Open in IMG/M
3300026314\|Ga0209268_1070768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1047	Open in IMG/M
3300026316\|Ga0209155_1038358	All Organisms → cellular organisms → Bacteria	1910	Open in IMG/M
3300026318\|Ga0209471_1210852	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300026327\|Ga0209266_1128568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1064	Open in IMG/M
3300026343\|Ga0209159_1229205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	570	Open in IMG/M
3300026524\|Ga0209690_1281111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	525	Open in IMG/M
3300026527\|Ga0209059_1062842	All Organisms → cellular organisms → Bacteria	1612	Open in IMG/M
3300026532\|Ga0209160_1091490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1568	Open in IMG/M
3300027587\|Ga0209220_1110546	Not Available	719	Open in IMG/M
3300027616\|Ga0209106_1092845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	677	Open in IMG/M
3300027725\|Ga0209178_1173402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	754	Open in IMG/M
3300027765\|Ga0209073_10527310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	501	Open in IMG/M
3300027846\|Ga0209180_10512046	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300027875\|Ga0209283_10610117	All Organisms → cellular organisms → Bacteria → Terrabacteria group	691	Open in IMG/M
3300028536\|Ga0137415_10822635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	739	Open in IMG/M
3300028792\|Ga0307504_10376249	All Organisms → cellular organisms → Bacteria → Terrabacteria group	553	Open in IMG/M
3300028878\|Ga0307278_10446095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	567	Open in IMG/M
3300030998\|Ga0073996_12161145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1018	Open in IMG/M
3300031670\|Ga0307374_10303530	Not Available	1007	Open in IMG/M
3300031740\|Ga0307468_101970295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	559	Open in IMG/M
3300031753\|Ga0307477_10315014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1079	Open in IMG/M
3300031820\|Ga0307473_10249061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1088	Open in IMG/M
3300031903\|Ga0307407_10042118	All Organisms → cellular organisms → Bacteria	2558	Open in IMG/M
3300032205\|Ga0307472_100788797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	866	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.45%
Host-Associated	Host-Associated	7.55%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.51%
Plants	Host-Associated → Plants	6.60%
Aquatic	Environmental → Aquatic	0.94%
Fungi	Host-Associated → Fungi	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.66%
Freshwater	Environmental → Aquatic → Freshwater	0.94%
Cave	Environmental → Terrestrial → Cave	0.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.94%
Mycelium	Host-Associated → Fungi → Mycelium	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.42%
Loam	Environmental → Terrestrial → Soil → Loam	11.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.66%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.89%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.94%
Clay	Environmental → Terrestrial → Soil → Clay	0.94%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.94%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.02%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	27.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.60%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	5.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.66%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.89%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.94%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.94%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	19.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	7.55%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.66%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.66%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	4.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.89%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.94%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.94%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.94%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3	Environmental	Open in IMG/M
3300001333	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-PF)- 6 month illumina	Environmental	Open in IMG/M
3300001334	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-65cm)- 6 month illumina	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009651	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063	Environmental	Open in IMG/M
3300010142	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012014	Permafrost microbial communities from Nunavut, Canada - A10_80cm_6M	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012180	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA058 MetaG	Host-Associated	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012392	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013758	Permafrost microbial communities from Nunavut, Canada - A24_65cm_12M	Environmental	Open in IMG/M
3300013763	Permafrost microbial communities from Nunavut, Canada - A15_65cm_0M	Environmental	Open in IMG/M
3300014268	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300022691	Soil microbial communities from Calhoun CZO, South Carolina, United States - 60cm depth	Environmental	Open in IMG/M
3300024323	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300030998	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031576	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
P3_DRAFT_00739380	2088090008	Soil	MNVDSFRFLPRSFRPYYEGRGPFPGEDEPVWAPFEKRLQESRIALLTSAGLYLKKTXXXX
A21PFW6_12073382	3300001333	Permafrost	MKVDSYRFLPRSFRSFYEGRGPFAGEQEPVWAPFEKRLQESRIALLTSAGLFV
A2165W6_10289011	3300001334	Permafrost	VKVDSYRFLPRSFRSFYEGRGPFAGEDEPLWAPFEKRLQESRIALLTSAGLYM
JGI12053J15887_102999921	3300001661	Forest Soil	VKVDSFKFLPRSFRPLYEGRGAFPGEEAPVWAPFAKRLAESRIALLTSAG
JGI25617J43924_101965232	3300002914	Grasslands Soil	LIVDSYRFLPRSFRPLYEGKGPFPGEDAPVWAPFQKRLQASRIALLSSAGLYLKASQPSFDLTR
Ga0066677_102440121	3300005171	Soil	VIVDSYRFLPRSFRPFYEGRGPFPGEADLVWAAFEKRLASAKIALLTSAG
Ga0066680_103467482	3300005174	Soil	VIVDSYKFLPRSFRPLYEGRGPFSGEEGPVWAPFDKRLAASRICLLSSAGLYLESSQPPFDT
Ga0066680_105276951	3300005174	Soil	VVVDSYRFLPRSFRPLYEGRGPFPGEEGAVWAPFEKRLSAARIALLSSAGIYLKEIHPAFDL
Ga0066679_108616331	3300005176	Soil	VIVDSYRFLPRSFRPLYEGRGAFPGEDAPVWAPFDKRLADARIALLTSAGIYLKGSHPS
Ga0070703_103973181	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	VIVDSYRFLPRSFRPYYEGRGPFHGETEQVWAPFEKRLNEAKIALLTSAGVFMRESQQPF
Ga0070708_1005731221	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LIVDSYRFLPRSFRPFYEGKGPFPGEETPVWAPFEKRLQASRIALLSSAGLYLKASQTSFDLVREQDN
Ga0066682_107695682	3300005450	Soil	VLVDSYKFLPRSFRPLYEGRGPFPGEEAPVWTPFAKRLSESRLALLSSAGIYLKASQPTFDLDREQEHPEWG
Ga0070698_1012044291	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	LIVDSYRFLPRSFRPFYEGRGPFRGEEGPVWAPFAKRLADSRVALLTSAGIYVRATQPSFDLDREQS
Ga0070698_1021964762	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VIVDSYRFLPRSFRPLYEGRGPFAGEEAPVWAPFDKRLAASRIALLTSAGLYLESSQQPFDSR
Ga0070679_1007025461	3300005530	Corn Rhizosphere	MVVDSFRFLPRSFRPMFENATPLPGEDEPVWTPFESRLAESTIALLTSAGLSVEGE
Ga0066692_100793481	3300005555	Soil	LIVDSYRFLPRSFRPLYEGRGPFPGEEAPVWAPFEKRLQASRIALLTS
Ga0066707_101160331	3300005556	Soil	VIVDSYKFLPRSFRPLYEGRGAFPGEDAPVWAPFEKRLAYARIALLTSAGIYLKGSHPSFDVDREQAQP
Ga0068855_1018618272	3300005563	Corn Rhizosphere	MEVDSYRFLPRSFRARYEGPPRLPGEEEPVWAPFTARLAEARVALLSSAGLYLE
Ga0066693_101180913	3300005566	Soil	MVVDSYKFLPRSFRPLYEGRGPFSGEEGPVWAPFEKRLAGAPIALLTSAGPRDRD*
Ga0066703_107238491	3300005568	Soil	VIVDSYRFLPRSFRPLYEGRGAFPGEDAPVWAPFEKRLADARIALLTSAGIYLKGS
Ga0066691_103304471	3300005586	Soil	MIVDSYRFLPRSFRPFYEGRGPFPGEESPVWAPFEKRLSASRIALLT
Ga0070717_113696201	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LIVDSYRFLPRSFRPLYEGKGPFPGEEAPVWVPFEERLQASRIALLTSAGLYLRA
Ga0066656_109844422	3300006034	Soil	VIVDSYRFLPRSFRPFYEGRGPFPGEGDPVWAPFAKRLAGSRIAL
Ga0066665_104391923	3300006796	Soil	VIVDSYRFLPRSFRPFYEGRGPFRGEESPVWAPFEKRLSASRIALLTSAGVYMKES
Ga0066659_116962531	3300006797	Soil	VVVDSYRFLPRSFRPLYEGRGPFPGEESPVWAPFEKRLAESRIALLTSAGFYLKGSQQSF
Ga0066660_114992001	3300006800	Soil	VIVDSYRFLPRSFVPLYSGAVPAPGDDGPVWAPFEKRLAEARIALLTSAGVYLEGDQPPFDGEREKAEPT
Ga0079220_102541861	3300006806	Agricultural Soil	MVVDSYRFLPRSFRPLYEGRGPFPGEEGPVWAPFSKRLADSRVALLTSAGL
Ga0075433_110475642	3300006852	Populus Rhizosphere	VVVDSFRFLPRSFRPLYEGRGPFPGEEEPVWAPFAKRLAEARITLLS
Ga0075426_111009681	3300006903	Populus Rhizosphere	VEVDSYRFLPRSFRPLYEGRGAFPGESEPVWAPFAKRLADSRIALLTSAGIHLKAGQP
Ga0075436_1003895792	3300006914	Populus Rhizosphere	VIVDSYKFLPRSFRPHYEGRGAFPGEDGEVWAPFAKRLSDSKIALLSSA
Ga0099829_107525523	3300009038	Vadose Zone Soil	LIVDSYRFLPRSFRPLYDGKGPFPGEDAPVWARFQKRLQASRIALLSSAGLYLKASQPSFDLTREQ
Ga0099830_112329242	3300009088	Vadose Zone Soil	LIVDSYRFLPRSFRPLYEGKGPFPGEDAPVWAPFQKRLQASRIALLSSAGLYLKASQPSFDL
Ga0105859_10703791	3300009651	Permafrost Soil	VVVDSYKFLPRSFRPFYEGRGPFPGEDEPVWAPFEKRLAESRLAVLTLAGMYVRLSQPAFDLEHEQTHPDWGDPTWRAIPASPAPRT*
Ga0127483_12133882	3300010142	Grasslands Soil	VLVDSYKFLPRSFRPLYEGRGAFPGEEAPVWTPFAKRLSESRLALLSSAGIYLKASQLTF
Ga0134082_103459812	3300010303	Grasslands Soil	VVVDSYRFLPRSFRPLYEGRVAFPCESDPVWTPFAKRLADSRIALLTSAGIHLK
Ga0134088_101708031	3300010304	Grasslands Soil	VVVDSYRFLPRSFRRLYEGRGAFPGESEPVWAPFAKRLAESRIALLTSAGIHLKACQPAF
Ga0134109_102928021	3300010320	Grasslands Soil	VIVDSYRFLPRSFRPFYEGRGPFPGEGDPVWAPFPKRLAGSRIALLTSAGMYLQGSQSSFDLD
Ga0134071_101691681	3300010336	Grasslands Soil	VVVDSYRFLPRSFRPLYEGRGAFPGESEPVWAPFVKRLAESRIALLTS
Ga0134062_104590122	3300010337	Grasslands Soil	VIVDSYRFLPRSFRPFYEGRGPFPGEGDPVWAPFPKRLAGSRIALLTSA
Ga0126370_102870613	3300010358	Tropical Forest Soil	LIVDSYRFLPRSFRPHYEGRGPFEGEDAPVWAPFEKRLSEAKIALLSSAGLYVGAT
Ga0126383_126484952	3300010398	Tropical Forest Soil	LIVDSYRFLPRSFRPYYEGRGPFPGEEDPVWAPFAKRLSASKIALLTSAGIHMRATQPGFDV
Ga0137391_106632751	3300011270	Vadose Zone Soil	VVVDSFKFLPRSFRPLYEGRGPFPGEEAPVWAPFEKRLAQSRIALLTSAGI
Ga0120159_10543033	3300012014	Permafrost	VLVDSFKFLPRTFRPLYEGRGPFPGEEEAVWAPFEKRLAESRIALLTSAGLFVRGSQAAFDLDREQANP
Ga0137389_112983422	3300012096	Vadose Zone Soil	MDVDSFAFLPRSFRPLYERPEPLADETEPVWAPFDKRLAEARIALVSSAGLYVKG
Ga0153974_10595851	3300012180	Attine Ant Fungus Gardens	VVVDSFKFLPRSFRPLYEGRGPFRGEEGPVWAPFAERLAESRIALLTSAGIYLRATQPSFDL
Ga0137383_105918831	3300012199	Vadose Zone Soil	VVVDSFKFLPRSFRPLYEGRGPFPGEEEPVWTPFAKRLADSRIALLTSAGMYL
Ga0137380_108399062	3300012206	Vadose Zone Soil	VVVDSYRFLPRSFRPFYEGRGPFPGEEEHVWAPFAKRLADSKIALLSSAGLYLES
Ga0137379_105886241	3300012209	Vadose Zone Soil	LIVDSYRFLPRSFRPLYEGKGPFPGEDAPVWAPFEKRLQESRIALLSSAGLYLKASQPSFDLTREQDNPE
Ga0137377_108008372	3300012211	Vadose Zone Soil	VVVDSYRFLPRSFRPLYEGRGPFPGEEGAVWAPFEKRLSAARIALLSSAGIYLKEIHPAFDLDG
Ga0137377_115621381	3300012211	Vadose Zone Soil	VRVDSFRFLPRSFRPLYEAPSRLPGEDAPTWAPATARLAETTVALLTSAGLYARHTQAPF
Ga0137387_102875431	3300012349	Vadose Zone Soil	MFRNPVIVDSYRFLPRSFRPYYEGRGPFRGEEEPVWAPFEKRLNEAKIALLTSAGVFMRDGQ
Ga0137385_115444452	3300012359	Vadose Zone Soil	VVVDSYRFLPRSFRPLYEGRGPHRGEEDPVWTPFAKRLSESRIALVSSAGLYLKASQDAYDLD
Ga0137390_102166441	3300012363	Vadose Zone Soil	VVVDSFKFLPRSFRPLYEGRGPFPGEEAPVWAPFEKRLAQSRIALLTSAGIYLKRSQPS
Ga0137390_105285452	3300012363	Vadose Zone Soil	LIVDSYRFLPRSFRPLYEGKGPFPGEDAPVWAPFQKRLQASRIALLSSAGLYLKASQPSFDLTREQDN
Ga0137390_110549772	3300012363	Vadose Zone Soil	VIVDSYRFLPRSFRPLYEGRGPFPGEEAPVWAPFEKRLAGARIALLTSAGLYVRSTQPSF
Ga0137390_116064561	3300012363	Vadose Zone Soil	LIVDSYRFLPRSFRPLYEGKGPFPGEDAPVWVPFERRLQASRIALLSSAGLYLKASQPSFDLT
Ga0134043_10321131	3300012392	Grasslands Soil	VLVDSYKFLPRSFRPLYEGRGAFPGEEAPVWTPFAKRVSESRLALLSSAGIYVKASQPTFDLDREQEHPE
Ga0164301_101762663	3300012960	Soil	MQVDSYRFLPRSFRSFYEGRGPFAGEEEPVWAPFEKRVQESRIALLTSAGVYVKKSQSPYDLDRERA
Ga0134087_100816981	3300012977	Grasslands Soil	LVVDSYRFLPRSFRPLYEGRGAFPGEEEPVWTHFAKRLADSRVALLTSAGIY
Ga0164304_105695102	3300012986	Soil	MQVDSYRFLPRSFRSFYEGRGPFAGEEEPVWAPFEKRLQESRIALLTSAGLY
Ga0157378_123847022	3300013297	Miscanthus Rhizosphere	MQVDSFAFLPRSFRPMFEHPPRLEGEDEPVFAPFEKRLAESTIALLTSAGLYVEASQP
Ga0120147_10808061	3300013758	Permafrost	VIVDSFRFLPRTFRPYYEGRGPFPGEEEPVWAPFEKRLAESRIGLLTSAGMYVK
Ga0120179_10053491	3300013763	Permafrost	MKVDSYRFLPRSFRSFYEGRGPFAGEEEPVWAPFEKRLQELRIAMLTSAGLFVTRTQPSF
Ga0075309_10315321	3300014268	Natural And Restored Wetlands	MRIDSFAFLPRSFCPLFEKPPRLPGHEAPVWAPFAKRLAEAKVALLTSAGLYVSATQAA
Ga0137418_111776232	3300015241	Vadose Zone Soil	LIVDSYRFLPRSFRPLYEGRGPFAGEEAAVWAPFEKRLAASRIALLTSAG
Ga0182034_114097032	3300016371	Soil	VRIDSYRFLPRSFRPLFEGRGPFHGEEAPVWTPFDKRLAESRIALLTS
Ga0187823_103262551	3300017993	Freshwater Sediment	LIVDSYKFLPRSFRPLYEGRGPLPEEEAPVWTPFPKRLSESRIALL
Ga0066662_111545852	3300018468	Grasslands Soil	VIVDSYRFLPRSFRPMYEGRGLFPGEEAPVWAPFEKRLATARIALLSSAGIYI
Ga0190271_137399411	3300018481	Soil	VNVDSYAFLPRSFRAMYEEPPRVAGEDEPVWAPFEKRLAESTVALLSSAGLYVAADQE
Ga0066669_102816254	3300018482	Grasslands Soil	VVVDSFKFLPRSFRPFYEGRGAFPGAEKPVSAPFAKRLAESRIALLTSAGL
Ga0066669_114618111	3300018482	Grasslands Soil	VTIDSYRFLPRSFRPFYEGRGPFPGEGDPVWAPFPKRLAGSRIALLTSAGMYLQGSQSSFDL
Ga0193755_11332671	3300020004	Soil	VIVDSFKFLPRTFRPLYEGRGPFPGEDAPLWAPFQKRLAESRIALLTSAGIYLKHSQPSFDLDREQTHPEW
Ga0248483_1708042	3300022691	Soil	LQVDSYKYLPRTFRPFYEGRGPFHGEEGAVWAPFEKRLAESRIALLTSAGVLSLIHI
Ga0247666_11097352	3300024323	Soil	VVVDSFKFLPRSFRPLYEGRGPFPGEEHAVWAPFEKRLAESRIALLTSA
Ga0207646_100341277	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VIVDSYRFLPRSFRPYYEGRGAFHGEEEPMWAPFEKRLSEAKIALLTS
Ga0209235_10670613	3300026296	Grasslands Soil	MIVDSYRFLPRSFRPFYEGRGPFPGEESPVWAPFEKRLSASRIALLTSAGVHMKESQPTF
Ga0209237_10423221	3300026297	Grasslands Soil	MIVDSYRFLPRSFRPFYEGRGAFPGEESPVWAPFEKRLSASRIALLTSAGLYMK
Ga0209238_11935451	3300026301	Grasslands Soil	VLVDSYRFLPRSFRPLYEGRGAFPGEESSVWAPFEKRLADSRIALLTSAVTGR
Ga0209469_10501274	3300026307	Soil	VLVDSYKFLPRSFRPLYEGRGAFPGEEAPVWTPFAKRLSESRLALLSSAGIYLKASQ
Ga0209239_13061532	3300026310	Grasslands Soil	VTIDSYRFLPRSFRPFYEGRGPFPGEGDPVWAPFAKRLAGSRIAL
Ga0209268_10707682	3300026314	Soil	VLVDSYKFLPRSFRPLYEGRGAFPGEEAPVWTPFAKRLSESRLALLSSAGIYVKASQ
Ga0209155_10383584	3300026316	Soil	VLVDSYKFLPRSFRPLYEGRGAFPGEEAPVWTPFAKRLSESRLALLSSAGIYVKASQPT
Ga0209471_12108523	3300026318	Soil	VIVDSYRFLPRSFRPFYEGRGPFPGEESPVWAPFEKRLSASRIALLTSA
Ga0209266_11285682	3300026327	Soil	VLVDSYKFLPRSFRPLYEGRGPFPGEEAPVWTPFAKRLSESRLALLS
Ga0209159_12292052	3300026343	Soil	VLVDSYKFLPRSFRPLYEGRGPFPGEEAPVWTPFAKRLSESRLALLSSAGIYLK
Ga0209690_12811112	3300026524	Soil	VIVDSYRFLPRSFRPFYEGRGPFPGEESPVWAPFEKRLSASRIALLTS
Ga0209059_10628421	3300026527	Soil	VIVDSYRFLPRSFRPLYEGRGAFPGEDAPVWAPFEKRLADARIALLTSAGIYLKGSQP
Ga0209160_10914903	3300026532	Soil	LIVDSYRFLPRSFRPLYEGRGPFPGEEAPVWAPFEKRLQASRIALLTSAG
Ga0209220_11105461	3300027587	Forest Soil	VIVDSFKFLPRTFRPFYEGRGPFAGEEEPVWAPFEKRLAESRIALLTSAGMYVKSSQP
Ga0209106_10928452	3300027616	Forest Soil	VIVDSFKFLPRSFRPLYEGRGPFPGDEAPVWAPFPKRLDASRIALLTSAGIYLKATQEAFDV
Ga0209178_11734021	3300027725	Agricultural Soil	LIVDSYRFLPRSFRPLFEGHGPFRGEEGPVWTPFSKRLAEARIALLT
Ga0209073_105273102	3300027765	Agricultural Soil	VNVDSYRFLPRSFRPLYEGRGAFLGEEGPVWAPLGKRLAEARVALLASAGLFERSSQEPFDLESERADPL
Ga0209180_105120461	3300027846	Vadose Zone Soil	LIVDSYRFLPRSFRPLYEGRGPFPGEEAPVWAPFEKRLAASRIALLTSVGMYLESSQASFDLE
Ga0209283_106101172	3300027875	Vadose Zone Soil	VIVDSFRFLPRSFRPFYEGRAPLPGEEAPVWTPFDKRLAESRIALLTSAGIY
Ga0137415_108226352	3300028536	Vadose Zone Soil	MIVDSYRFLPRSFRPFYEGRGPFPGEESPVWAPFEKRLSASRIALLTSAGVYIKESQQTF
Ga0307504_103762492	3300028792	Soil	VDSYRFLPRSFIPLFSGVTPAPGDDGPVWAPFETRLADARIALLASAGLYLEGEQPSF
Ga0307278_104460951	3300028878	Soil	MEVDSFAFLPRSFRPLYERPEPLADETEPVWASLDKRLAEARVALVSSAGLYVK
Ga0073996_121611452	3300030998	Soil	VIVDSFKFLPRSFRPLYEGRGPFPGEEAPVWAPFQKRLAESRIALLSSAGISLKGSQPAFDLK
Ga0247727_103323251	3300031576	Biofilm	MRVDSFAFLPRSFRPLFDKPPRLPGHEAPVFSPFEKRLAEAKIALLTSAGLYQKATQVS
Ga0307374_103035301	3300031670	Soil	VEVDSYRFLPRSFRARYESPSLRPDETEPVWAPSPVRLADARVALLTSGGLY
Ga0307468_1019702952	3300031740	Hardwood Forest Soil	VIVDSFRFLPRSFRPLYEGRGPLRGEEAPVWTPFTHRLSDARIAIVSSAGLYLKASQAPYDLERERAHPE
Ga0307477_103150141	3300031753	Hardwood Forest Soil	LIVDSYRFLPRSFRPLYEGRGPFPGEEGPVWAPFLKRLAESRIALLTSAGFYVPGK
Ga0307473_102490612	3300031820	Hardwood Forest Soil	LVVDSYRFLPRSFRPFYEGRGPFRGEEGPVWAPFAKRLADSRIALLTSAGIYLHGAQPPFDVDREQSHPEWG
Ga0307406_105123051	3300031901	Rhizosphere	MRVDSFAFLPRSFRPLFEKPPRLPGHEAPVWAPFGKRLAEAKVALLTSAGLFLTATQPPF
Ga0307407_100421181	3300031903	Rhizosphere	MRVDSFAFLPRSFRPLFEKPPRLPGHEAPVWAPFGKRLAEAKVALLTSAG
Ga0307472_1007887972	3300032205	Hardwood Forest Soil	LVVDSYRFLPRSFRPFYEGRGPFRGEEGPVWAPFAKRLADSRIALLTS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093591

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences