Metagenome / Metatranscriptome Family F093583

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093583
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	56 residues
Representative Sequence	SIPATVTKFFLGDYSPRSPRETNADVFIEPNSGAVDPTRNLLSLDVMRTDCPDFDV
Number of Associated Samples	96
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.83 %
% of genes near scaffold ends (potentially truncated)	96.23 %
% of genes from short scaffolds (< 2000 bps)	84.91 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.170 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (12.264 % of family members)
Environment Ontology (ENVO)	Unclassified (26.415 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.679 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.33% β-sheet: 0.00% Coil/Unstructured: 66.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00654	Voltage_CLC	0.94
PF07883	Cupin_2	0.94
PF05990	DUF900	0.94
PF00149	Metallophos	0.94
PF02535	Zip	0.94
PF04185	Phosphoesterase	0.94
PF14534	DUF4440	0.94
PF00356	LacI	0.94
PF13365	Trypsin_2	0.94
PF00155	Aminotran_1_2	0.94
PF03610	EIIA-man	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0038	H+/Cl- antiporter ClcA	Inorganic ion transport and metabolism [P]	0.94
COG0428	Zinc transporter ZupT	Inorganic ion transport and metabolism [P]	0.94
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.94
COG4782	Esterase/lipase superfamily enzyme	General function prediction only [R]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.11 %
Unclassified	root	N/A	1.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.11 %
Unclassified	root	N/A	1.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.17 %
Unclassified	root	N/A	1.89 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	96.23 %
Unclassified	root	N/A	1.89 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	26.42 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	14.15 %
Unclassified	root	N/A	1.89 %
Fungi	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.42 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	14.15 %
Unclassified	root	N/A	1.89 %
Dikarya	subkingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.42 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	14.15 %
Unclassified	root	N/A	1.89 %
Basidiomycota	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.42 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	2.83 %
Unclassified	root	N/A	1.89 %
Agaricomycotina	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina	0.94 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.42 %
Unclassified	root	N/A	1.89 %
Agaricomycetes	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	0.94 %
Acidobacteriaceae bacterium KBS 146	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 146	0.94 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.94 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.94 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.42 %
Unclassified	root	N/A	1.89 %
Agaricomycetidae	subclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae	0.94 %
Acidobacteriaceae bacterium KBS 146	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 146	0.94 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.94 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.94 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101849494	All Organisms → cellular organisms → Bacteria → Acidobacteria	3662	Open in IMG/M
3300001356\|JGI12269J14319_10010435	All Organisms → cellular organisms → Bacteria	7524	Open in IMG/M
3300001593\|JGI12635J15846_10544934	All Organisms → cellular organisms → Bacteria → Acidobacteria	680	Open in IMG/M
3300002912\|JGI25386J43895_10159785	All Organisms → cellular organisms → Bacteria → Acidobacteria	564	Open in IMG/M
3300005334\|Ga0068869_101089957	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	698	Open in IMG/M
3300005338\|Ga0068868_100010393	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	6737	Open in IMG/M
3300005364\|Ga0070673_100885870	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	827	Open in IMG/M
3300005435\|Ga0070714_101360405	All Organisms → cellular organisms → Bacteria → Acidobacteria	693	Open in IMG/M
3300005436\|Ga0070713_101018950	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	799	Open in IMG/M
3300005439\|Ga0070711_100353328	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1182	Open in IMG/M
3300005526\|Ga0073909_10487577	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300005539\|Ga0068853_100757094	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	928	Open in IMG/M
3300005568\|Ga0066703_10459220	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	762	Open in IMG/M
3300005602\|Ga0070762_10230234	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 146	1145	Open in IMG/M
3300005607\|Ga0070740_10299009	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	644	Open in IMG/M
3300005921\|Ga0070766_10113355	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1621	Open in IMG/M
3300006162\|Ga0075030_101272703	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300006796\|Ga0066665_11293851	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	559	Open in IMG/M
3300006797\|Ga0066659_10039207	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2908	Open in IMG/M
3300006804\|Ga0079221_11121114	All Organisms → cellular organisms → Bacteria → Acidobacteria	604	Open in IMG/M
3300006881\|Ga0068865_100982544	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	738	Open in IMG/M
3300009012\|Ga0066710_103413571	All Organisms → cellular organisms → Bacteria → Acidobacteria	603	Open in IMG/M
3300009088\|Ga0099830_11001838	All Organisms → cellular organisms → Bacteria → Acidobacteria	692	Open in IMG/M
3300009089\|Ga0099828_11850079	All Organisms → cellular organisms → Bacteria → Acidobacteria	530	Open in IMG/M
3300009545\|Ga0105237_11090410	All Organisms → cellular organisms → Bacteria → Acidobacteria	805	Open in IMG/M
3300009628\|Ga0116125_1175194	All Organisms → cellular organisms → Bacteria → Acidobacteria	602	Open in IMG/M
3300009632\|Ga0116102_1047653	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1356	Open in IMG/M
3300009759\|Ga0116101_1088642	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	708	Open in IMG/M
3300010048\|Ga0126373_10200239	All Organisms → cellular organisms → Bacteria → Acidobacteria	1935	Open in IMG/M
3300010048\|Ga0126373_12979010	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300010321\|Ga0134067_10423363	All Organisms → cellular organisms → Bacteria → Acidobacteria	538	Open in IMG/M
3300010333\|Ga0134080_10078891	All Organisms → cellular organisms → Bacteria → Acidobacteria	1330	Open in IMG/M
3300010359\|Ga0126376_11898609	All Organisms → cellular organisms → Bacteria → Acidobacteria	635	Open in IMG/M
3300011119\|Ga0105246_12073132	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300012199\|Ga0137383_10165178	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1622	Open in IMG/M
3300012199\|Ga0137383_11116692	All Organisms → cellular organisms → Bacteria → Acidobacteria	570	Open in IMG/M
3300012207\|Ga0137381_10766060	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	837	Open in IMG/M
3300012350\|Ga0137372_10152014	All Organisms → cellular organisms → Bacteria → Acidobacteria	1889	Open in IMG/M
3300012355\|Ga0137369_10856650	All Organisms → cellular organisms → Bacteria → Acidobacteria	614	Open in IMG/M
3300012925\|Ga0137419_11835170	All Organisms → cellular organisms → Bacteria → Acidobacteria	519	Open in IMG/M
3300012955\|Ga0164298_11327248	All Organisms → cellular organisms → Bacteria → Acidobacteria	552	Open in IMG/M
3300013100\|Ga0157373_10182771	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1476	Open in IMG/M
3300013296\|Ga0157374_11018365	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	848	Open in IMG/M
3300013307\|Ga0157372_10254896	All Organisms → cellular organisms → Bacteria → Acidobacteria	2037	Open in IMG/M
3300014169\|Ga0181531_10239115	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1107	Open in IMG/M
3300014495\|Ga0182015_10395643	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	892	Open in IMG/M
3300014655\|Ga0181516_10486556	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300015241\|Ga0137418_11128121	All Organisms → cellular organisms → Bacteria → Acidobacteria	556	Open in IMG/M
3300015245\|Ga0137409_11094256	All Organisms → cellular organisms → Bacteria → Acidobacteria	636	Open in IMG/M
3300015264\|Ga0137403_10350159	All Organisms → cellular organisms → Bacteria → Acidobacteria	1364	Open in IMG/M
3300015264\|Ga0137403_11067947	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae	654	Open in IMG/M
3300016422\|Ga0182039_10513893	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1036	Open in IMG/M
3300016445\|Ga0182038_11685735	All Organisms → cellular organisms → Bacteria → Acidobacteria	571	Open in IMG/M
3300018007\|Ga0187805_10250026	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	812	Open in IMG/M
3300018017\|Ga0187872_10022686	All Organisms → cellular organisms → Bacteria → Acidobacteria	3614	Open in IMG/M
3300018022\|Ga0187864_10211567	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	912	Open in IMG/M
3300018022\|Ga0187864_10362568	All Organisms → cellular organisms → Bacteria → Acidobacteria	632	Open in IMG/M
3300018042\|Ga0187871_10877007	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M
3300018043\|Ga0187887_10251182	All Organisms → cellular organisms → Bacteria → Acidobacteria	1047	Open in IMG/M
3300018433\|Ga0066667_10827901	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	790	Open in IMG/M
3300019789\|Ga0137408_1440274	All Organisms → cellular organisms → Bacteria → Acidobacteria	7089	Open in IMG/M
3300021180\|Ga0210396_10884153	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	762	Open in IMG/M
3300021478\|Ga0210402_10666915	All Organisms → cellular organisms → Bacteria → Acidobacteria	962	Open in IMG/M
3300021478\|Ga0210402_10827192	All Organisms → cellular organisms → Bacteria → Acidobacteria	852	Open in IMG/M
3300021478\|Ga0210402_11001963	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	762	Open in IMG/M
3300021478\|Ga0210402_11064215	All Organisms → cellular organisms → Bacteria → Acidobacteria	736	Open in IMG/M
3300021559\|Ga0210409_10432838	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1174	Open in IMG/M
3300021860\|Ga0213851_1508614	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1191	Open in IMG/M
3300022724\|Ga0242665_10037812	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1225	Open in IMG/M
3300022724\|Ga0242665_10040064	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1201	Open in IMG/M
3300025906\|Ga0207699_10230414	All Organisms → cellular organisms → Bacteria → Acidobacteria	1269	Open in IMG/M
3300025928\|Ga0207700_10079651	All Organisms → cellular organisms → Bacteria → Acidobacteria	2552	Open in IMG/M
3300025929\|Ga0207664_10006835	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	7883	Open in IMG/M
3300025929\|Ga0207664_10081879	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2628	Open in IMG/M
3300025939\|Ga0207665_10939998	All Organisms → cellular organisms → Bacteria → Acidobacteria	687	Open in IMG/M
3300025942\|Ga0207689_11042550	All Organisms → cellular organisms → Bacteria → Acidobacteria	690	Open in IMG/M
3300026023\|Ga0207677_10006624	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6354	Open in IMG/M
3300026309\|Ga0209055_1230900	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300026313\|Ga0209761_1333724	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300026328\|Ga0209802_1044974	All Organisms → cellular organisms → Bacteria → Acidobacteria	2221	Open in IMG/M
3300027070\|Ga0208365_1056500	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300027604\|Ga0208324_1162681	All Organisms → cellular organisms → Bacteria → Acidobacteria	604	Open in IMG/M
3300027619\|Ga0209330_1082024	All Organisms → cellular organisms → Bacteria → Acidobacteria	735	Open in IMG/M
3300027698\|Ga0209446_1022654	All Organisms → cellular organisms → Bacteria → Acidobacteria	1563	Open in IMG/M
3300027725\|Ga0209178_1277516	All Organisms → cellular organisms → Bacteria → Acidobacteria	612	Open in IMG/M
3300027895\|Ga0209624_10298134	All Organisms → cellular organisms → Bacteria → Acidobacteria	1073	Open in IMG/M
3300027911\|Ga0209698_11134883	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300028572\|Ga0302152_10099936	All Organisms → cellular organisms → Bacteria → Acidobacteria	914	Open in IMG/M
3300029922\|Ga0311363_10225544	All Organisms → cellular organisms → Bacteria → Acidobacteria	2224	Open in IMG/M
3300030004\|Ga0302186_10228715	All Organisms → cellular organisms → Bacteria → Acidobacteria	634	Open in IMG/M
3300030044\|Ga0302281_10357624	Not Available	571	Open in IMG/M
3300030054\|Ga0302182_10081398	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1438	Open in IMG/M
3300030593\|Ga0210263_1201269	All Organisms → cellular organisms → Bacteria → Acidobacteria	519	Open in IMG/M
3300030741\|Ga0265459_12315248	All Organisms → cellular organisms → Bacteria → Acidobacteria	656	Open in IMG/M
3300031231\|Ga0170824_106166862	All Organisms → cellular organisms → Bacteria → Acidobacteria	527	Open in IMG/M
3300031231\|Ga0170824_116106319	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300031232\|Ga0302323_100486695	All Organisms → cellular organisms → Bacteria → Acidobacteria	1321	Open in IMG/M
3300031258\|Ga0302318_10622345	Not Available	545	Open in IMG/M
3300031474\|Ga0170818_105374585	All Organisms → cellular organisms → Bacteria → Acidobacteria	509	Open in IMG/M
3300031670\|Ga0307374_10633767	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300031671\|Ga0307372_10409400	All Organisms → cellular organisms → Bacteria → Acidobacteria	689	Open in IMG/M
3300032180\|Ga0307471_100051677	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3396	Open in IMG/M
3300032892\|Ga0335081_11694051	All Organisms → cellular organisms → Bacteria → Acidobacteria	689	Open in IMG/M
3300033412\|Ga0310810_10110714	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3260	Open in IMG/M
3300034124\|Ga0370483_0011470	All Organisms → cellular organisms → Bacteria → Acidobacteria	2512	Open in IMG/M
3300034163\|Ga0370515_0286259	All Organisms → cellular organisms → Bacteria → Acidobacteria	697	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.68%
Host-Associated	Host-Associated	11.32%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.53%
Aquatic	Environmental → Aquatic	14.15%
Plants	Host-Associated → Plants	11.32%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.92%
Freshwater	Environmental → Aquatic → Freshwater	12.26%
Peat	Environmental → Terrestrial → Peat	6.60%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.66%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.66%
Sediment	Environmental → Aquatic → Sediment	1.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.06%
Loam	Environmental → Terrestrial → Soil → Loam	13.21%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.32%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.72%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.89%
Clay	Environmental → Terrestrial → Soil → Clay	1.89%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.09%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.43%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.55%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.72%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.89%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.89%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.66%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.77%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.83%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	2.83%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	2.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.89%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.89%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.89%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.94%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.94%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005607	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014655	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaG	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021860	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027619	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028572	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_1	Environmental	Open in IMG/M
3300029922	III_Fen_E1 coassembly	Environmental	Open in IMG/M
3300030004	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_1	Environmental	Open in IMG/M
3300030044	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_2	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030593	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO145-ARE024SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031258	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031671	Soil microbial communities from Risofladan, Vaasa, Finland - OX-1	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1018494945	3300000364	Soil	ASIPATITKFFLGEDPQRSPRELNAEVFIEPKGXPVDXKRNLLSLDVMRKDCPEFDV*
JGI12269J14319_100104358	3300001356	Peatlands Soil	FLGDYSPRSPRETSADVFIEPNVQPVDPARNLLSLAAMRTDCPDFDV*
JGI12635J15846_105449342	3300001593	Forest Soil	VFDHASIPATVTKFFLGDYSPRSPRETSADVFIEPQGPAVDPARNLLSLDVMRTDCPDFE
JGI25386J43895_101597851	3300002912	Grasslands Soil	ATVAKFFLEDDPNRSPREINADVFIEPNVQPVDANRNLLSLANMRDDCPKFDI*
Ga0068869_1010899572	3300005334	Miscanthus Rhizosphere	RVFDHASIPATVTKFFLGDDPQRSPREINADVFIDPPSGTVDPSRNLLSLTAMRKDCPEFDV*
Ga0068868_1000103931	3300005338	Miscanthus Rhizosphere	HASIPATVTKFFLGDDPQRSPREINADVFIDPPSGTVDPSRNLLSLTAMRKDCPEFDV*
Ga0070673_1008858703	3300005364	Switchgrass Rhizosphere	ASIPGTITKFFLGDYAARSPRELNADVFLEPQSSPRAGNNLLSLDSMRTDCPEFDV*
Ga0070714_1013604051	3300005435	Agricultural Soil	IPATATKFFLGDASPRSPREINADVFIEPKGANVDPARNLLSLTAMRTDCPDFDV*
Ga0070713_1010189503	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	KNTVVDRVFDHASIPATITNFFLSGDAKQSPREIHADVFIEPAAGPVDPQRNLLSLGTMRSDCPEFDV*
Ga0070711_1003533283	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	DHASIPGTVTKFFLGDFAARSPREVNADVFIEPQASPRADRNLLSLDTMRTDCPEFDV*
Ga0073909_104875772	3300005526	Surface Soil	PATITKFFLGDASPRSPREINADVFIEPKSANVDPARNVLSLTAMRTDCPDFDV*
Ga0068853_1007570943	3300005539	Corn Rhizosphere	IPGTVTKFFLGDYAARSPRELNADVFIEPPSSPRADCNLLSLDSMRTDCPEFDV*
Ga0066703_104592203	3300005568	Soil	RVFDHASIPATVTKFFLGDDPQRSPREISADVFIESNARAADPARNLLSLSTIREDCPDFDV*
Ga0070762_102302343	3300005602	Soil	VVDRVFDHASIPATITKFFLGQYSGDLSPRETSADVFIEPQGGAVDPARNVLSLNVMRTDCPDFDV*
Ga0070740_102990092	3300005607	Surface Soil	DRVFDHASIPATVTKFFLGDYSPRSPRETSADVFIEPKSGTVDPTRNLLSLSTMRTDCPDFDV*
Ga0070766_101133553	3300005921	Soil	PATITKFFLGDYSPRSPRETNADVFIEPNSGAVDPTRNLLSLDVMRTDCPDFDV*
Ga0075030_1012727032	3300006162	Watersheds	TKFFLGDYAPRSPRETSADVFIEPNSGAVDPARNLLSLNVMRTDCPDFDV*
Ga0066665_112938512	3300006796	Soil	ASIPATVAKFFLEDDPNRSPREINADVFIEPNVQPVDANRNLLSLANMRDDCPKFDI*
Ga0066659_100392071	3300006797	Soil	FFLPDYSPVSPREAIANVFIEPNKQPIDANRNLLSLAAMRDDCPVFDI*
Ga0079221_111211141	3300006804	Agricultural Soil	DRVFDHASIPATVSKFFQIDDVLRSPREVNADVFIEPKADPIDPQRNLLSLDVMRTDCPEFGV*
Ga0068865_1009825441	3300006881	Miscanthus Rhizosphere	DRVFDHASIPATVTKFFLGDDPQRSPREINADVFIDPPSGTVDPSRNLLSLTAMRKDCPEFDV*
Ga0066710_1034135711	3300009012	Grasslands Soil	VDRVFDHASIPATVAKFFLEDDPNRSPREINADVFIEPNVQPVDANRNLLSLANMRDDCPKFDI
Ga0099830_110018383	3300009088	Vadose Zone Soil	VFDHASIPATITRFFLNDDAKRSPREIHADVFIEPNAAPIDPQRNLLSLDTMRTDCPEFDV*
Ga0099828_118500792	3300009089	Vadose Zone Soil	ASIPATITKFFLNDDAKRSPREIHADVFIEPNTAPIDPQRNLLALDTMRTDCPEFDV*
Ga0105237_110904101	3300009545	Corn Rhizosphere	KFFLGDDPQRSPREINADVFIDPPSGTVDPSRNLLSLTAMRKDCPEFDV*
Ga0116125_11751941	3300009628	Peatland	SIPGTITKFFLGTYAPRSPRESSADVFIEPNSGAVDPTRNLLSLNAVRTDCPDFDV*
Ga0116102_10476531	3300009632	Peatland	HASIPGTVTKFFLGDYSPRSPRETSADVFIEPNAPPVDPARNLLSLDIMRTDCPDFDV*
Ga0116101_10886421	3300009759	Peatland	VTKFFLGDYSPRSPRETNADVFIEPNSGAVDPARNLLSLDVMRTDCPDFDV*
Ga0126373_102002394	3300010048	Tropical Forest Soil	FFLGDYSPRSPREAAAETFIEPPSQPNAANNLLSLDVMRTDCPDFSV*
Ga0126373_129790101	3300010048	Tropical Forest Soil	ATITKFFLGDYSPRSPREIKADVFIEPRNGAVDPARNLLSLDVMRDDCPDFT*
Ga0134067_104233631	3300010321	Grasslands Soil	NTVVDRVFDHASIPATLTKVFRIGGAAQSPREINADVFIEPNASPVDATRNLLSLDTMRNDCPVFNL*
Ga0134080_100788913	3300010333	Grasslands Soil	FLGDYSPRSPREINADVFIEPNSGAVDPNRNLLSLLTMRNDCPEFGVQD*
Ga0126376_118986091	3300010359	Tropical Forest Soil	PATISKFFSADDWAKSPRETNADVFIEPTTAPVDPARNLLSLDVMRNDCPEFGV*
Ga0105246_120731321	3300011119	Miscanthus Rhizosphere	DHASIPATVTKFFLGDDPQRSPREINADIFIDPPSGTVDPSRNLLSLTAMRKDCPEFDV*
Ga0137383_101651781	3300012199	Vadose Zone Soil	IPATVTKFFLGDDPQRSPREISADVFIESNARAADPARNLLSLSTIREDCPDFDV*
Ga0137383_111166921	3300012199	Vadose Zone Soil	RVFDHASIPATVAKFFLEDDPNRSPREINADVFIEPNVQPVDANRNLLSLANMRDDCPTFDI*
Ga0137381_107660601	3300012207	Vadose Zone Soil	SIPATVTKFFLGEYSPRSPRETNADVFIEPNTGTVDATRNLLARDTMRTDCPDFSG*
Ga0137372_101520141	3300012350	Vadose Zone Soil	DHASIPGTIQKFFLGDSPQRSPREINADVFIESSNQPVDPQRNLLSLAAMRNDCPEFGV*
Ga0137369_108566501	3300012355	Vadose Zone Soil	SFFLGDYAPRSEREKNADIFIEPKGPAVDPARNLLSLASMRNDCSDFA*
Ga0137419_118351701	3300012925	Vadose Zone Soil	HASIPATVTKFFLGDDPQRSPREINADVFIEPNVQPIDPDRNLLSLPIMRTDCPDFGL*
Ga0164298_113272482	3300012955	Soil	FLGDYSPRSPRETTADIFIEPQTGPVDPARNLLSLDTMRKDCPDFDA*
Ga0157373_101827711	3300013100	Corn Rhizosphere	KFFLGDDPQRSPREINADIFIDPPSGTVDPSRNLLSLTAMRKDCPEFDV*
Ga0157374_110183653	3300013296	Miscanthus Rhizosphere	FFLGDYSPRSPRETSADVFIEPNSGTVDPARHLLSLTTMRTDCPEFDV*
Ga0157372_102548963	3300013307	Corn Rhizosphere	DHASIPATVTKFFLGDYASRSPREINVDVFIEPQASPRADCNLLSLGTMRTDCPDFDV*
Ga0181531_102391151	3300014169	Bog	ITNFFLGAYSPRSPRETSADVFIEPNAGTVDPARNLLSLGTVRTDCPDFDV*
Ga0182015_103956431	3300014495	Palsa	IPATITKFFLGDYSPRSPRETSADVFIEPNVAPVDPARNLLSLAAMRTDCPDFDV*
Ga0181516_104865562	3300014655	Bog	SIPATVTKFFLGDYSPRSPRETNADVFIEPNSGAVDPTRNLLSLDVMRTDCPDFDV*
Ga0137418_111281212	3300015241	Vadose Zone Soil	DRVFDHASIPATVTKFFLGDDPQRSPREINADVFIEPNVQPIDPDRNLLSLPIMRTDCPDFGL*
Ga0137409_110942561	3300015245	Vadose Zone Soil	DHASIPATVTKFFLGDASPRSPREVNADVFIEPNGGPVDPNRNLLLLPAMRNDCPDFDV*
Ga0137403_103501591	3300015264	Vadose Zone Soil	IPGTITKFFLGDYSPVSPRETNADVFIEPKTGAVDPARNLLSLNTMRTDCPGFDV*
Ga0137403_110679472	3300015264	Vadose Zone Soil	MTKFFLNGDAKQSPREIHADVFIEPNTAPVDPERNLLSLETMRSDCPEFDV*
Ga0182039_105138931	3300016422	Soil	VVSRVFDHASIPATVTKFYLGSYSGDLSPRETSADIFIEPQGPAVDPARNVISLDVMRNDCPDFDA
Ga0182038_116857351	3300016445	Soil	KFFLGDYSPRSPRETSADVFIEPNLPPVDPNRNLLSLDAMRADCPDFDV
Ga0187805_102500263	3300018007	Freshwater Sediment	FDHASIPATVTKFFLGDYSPVSPRETNADVFLEPKSGAIDATRNLLSLDVMRTDCPDFG
Ga0187872_100226861	3300018017	Peatland	TITKFFLGDYSPRSPRETSADVFIEPNVAPVDPTRNLLSLAAIRTDCPDFDV
Ga0187864_102115671	3300018022	Peatland	DHASIPATVTKFFQLDDVARSPRELNADVFIEPNVAPVDPQRNLLSLDVIRTDCPKFGV
Ga0187864_103625682	3300018022	Peatland	FDHASIPATITKFFLGDYSPRSPRETSADVFIEPNVAPVDPARNLLSLAAMRTDCPDFDV
Ga0187871_108770071	3300018042	Peatland	KFFLGDYSPRSPRETSADVFLEPNVAPVDAARNLLSLDTMRTDSPDFDV
Ga0187887_102511823	3300018043	Peatland	FFLGDYSPRSPRETSADVFIEPLGPAVDPARNLLSLDAMRTDCPDFE
Ga0066667_108279011	3300018433	Grasslands Soil	HASIPATVTKFFLPDYSPVSPREAIANVFIEPNKQPIDANRNLLSLAAMRDDCPVFDI
Ga0137408_144027410	3300019789	Vadose Zone Soil	VFDHASIPGTITKFFLGDYSPVSPRETNADVFIEPKTGAVDPARNLLS
Ga0210396_108841531	3300021180	Soil	TKFFMGQYSGDLSPRETSADVFIEPQGGAVDPARNVLSLDVMRTDCPDFDV
Ga0210402_106669151	3300021478	Soil	TVSKFFQVTAPCSPRETNADIFIEPNTQPVDPNRNLLSLATMRDDCPVFDV
Ga0210402_108271921	3300021478	Soil	VDRVFDHASIPATVAKFFQVVAPCSPRETSADVFIEPNGQAVDPNRNLLSLATMRTDDDCPVFDI
Ga0210402_110019633	3300021478	Soil	VFDHASIPATVTKFFLGDYAPRSPRETNADVFIEPDAGAVDPGRNLLSLDAMRNDCPDFD
Ga0210402_110642151	3300021478	Soil	WIAKNTIVDRVFDHASIPRTISKFFLGDYTACSPRELSADVFIEAKGQNVDPARNLLSLDTMRNDCPDFE
Ga0210409_104328381	3300021559	Soil	PATITKFFLGQYSGDLSPRETSADVFIEPQGGAVDPARNVLSLNVMRTDCPDFDV
Ga0213851_15086143	3300021860	Watersheds	ATITKFFLGDYSPRSPRETSADIFIEPQGAAVDPARNLLSLDVMRTDCPDFDV
Ga0242665_100378121	3300022724	Soil	RVFDHASIPATITKFFLGQYSGDLSPRETSADVFIEPQGGDVDPVRNVLSLNVMRTDCPDFDV
Ga0242665_100400641	3300022724	Soil	RVFDHASIPATITKFFLGQYSGDLSPRETSADVFIEPQGGAVDPARNVLSLDVMRTDCPDFDV
Ga0207699_102304143	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	HASIPATLTKVFRIGGAAQSPREINADVFIEPNAAPVDAARNLLSLDTMRNDCPVFNL
Ga0207700_100796511	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LGDYSPRSPREINADVFIEPNNAQMRPQFNLLSLNAMRNDCPEFDV
Ga0207664_100068357	3300025929	Agricultural Soil	DRVFDHASIPATVTKFFLGDYSPRSPRETSADVFIEPNSGTVDPARNLLSLTTMRTDCPEFDV
Ga0207664_100818794	3300025929	Agricultural Soil	KFFLGDASPRSPREINADVFIEPKSANVDPARNVLSLTAMRTDCPDFDV
Ga0207665_109399983	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	DHASIPATVTKFFLGDDLARPPREINADVFIEPSAGPVDPQRNLLSLDVMRTDCPEFGV
Ga0207689_110425501	3300025942	Miscanthus Rhizosphere	RVFDHASIPATVTKFFLGDDPQRSPREINADVFIDPPSGTVDPSRNLLSLTAMRKDCPEFDV
Ga0207677_100066241	3300026023	Miscanthus Rhizosphere	VTKFFLGDDPQRSPREINADVFIDPPSGTVDPSRNLLSLTAMRKDCPEFDV
Ga0209055_12309001	3300026309	Soil	AKFFLEDDPNRSPREINADVFIEPNVQPVDANRNLLSLANMRDDCPRFDI
Ga0209761_13337242	3300026313	Grasslands Soil	KFFLEDDPNRSPREINADVFIEPNVQPVDANRNLLSLANMRDDCPKFDI
Ga0209802_10449741	3300026328	Soil	IPATVAKFFLEDDPNRSPREINADVFIEPNVQPVDANRNLLSLANMRDDCPKFDI
Ga0208365_10565001	3300027070	Forest Soil	RVFDHASIPATITKFFLGQYSGDLSPRETSADVFIEPLGGAVDPARNVLSLNVMRTDCPDFDV
Ga0208324_11626811	3300027604	Peatlands Soil	IPATITKFFLGDYSPRSPRETSADVFIEPNGPGVDPTRNLLSLAAMRNDCPDFDV
Ga0209330_10820241	3300027619	Forest Soil	VTKFFLRDYSPRSPRETSADVFIEPQGPAVDPARNLLSLDVMRTDCPDFE
Ga0209446_10226541	3300027698	Bog Forest Soil	SIPATITKFFLGDYSPRSPRETSADVFIEPNVAPVDPTRNLLSLTAMRDDCPDFDV
Ga0209178_12775161	3300027725	Agricultural Soil	VDRVFDHASIPATVSKFFQIDDVLRSPREVNADVFIEPKADPIDPQRNLLSLDVMRTDCPEFGV
Ga0209624_102981341	3300027895	Forest Soil	KFFLRDYSPRSPRETSADVFIEPQGPAVDPARNLLSLDVMRTDCPDFE
Ga0209698_111348832	3300027911	Watersheds	VTKFFLGDYAPRSPRETSADVFIEPNSGAVDPARNLLSLNVMRTDCPDFDV
Ga0302152_100999361	3300028572	Bog	VVSNRVFDHASIPATITRFFLGSYSPRSPRESNADVFIEPNVAPVDPARNLLSLDTMRTDCPDFDV
Ga0311363_102255444	3300029922	Fen	TITKFFLGSYSPRSPRETNADVFIEPNTAPVDPARNLLSLDAMRTDCPDFDVS
Ga0302186_102287152	3300030004	Bog	ASIPATITRFFLGSYSPRSPRESNADVFIEPNVAPVDPARNLLSLDTMRTDCPDFDV
Ga0302281_103576242	3300030044	Fen	DVSPRSPRETTANVFIEPKGPQANLNNNLLSLAAIRTNCPEFDV
Ga0302182_100813981	3300030054	Palsa	IPGTITKFFLGAYAPRSPRESSADVFIEPNSGAVDPTRNLLSLNAVRTDCPDFDV
Ga0210263_12012692	3300030593	Soil	TLTKFFLGDYSPRSPRETSADVFIEPNVAPVNPARNLLSLDIMRTDCPDFDV
Ga0265459_123152481	3300030741	Soil	RVFDHASIPGTVTKFLLGDYSPRSPRETSADVFIEPNVVPVDPARNLLSLDTMRTDCPDFDV
Ga0170824_1061668621	3300031231	Forest Soil	DRVFDHASIPGTINKFFLDGGQLQSPREVNADVFIEPAVDPVDPKRNLLSLATMRTDCPQFGV
Ga0170824_1161063191	3300031231	Forest Soil	SIPRTISKFFLGDYTACSPRELSADVFIEAKGQNVDPARNLLSLDTMRTDCIDFE
Ga0302323_1004866953	3300031232	Fen	PATVTKFFLGDYSPRSPRETSADVFIEPIGPTGNPNHNLLSLDAMRTDCPDFNV
Ga0302318_106223452	3300031258	Bog	GDFSPRSPRETTANVFIEPKGPQANLNNNLLSLAAIRTNCPEFDV
Ga0170818_1053745851	3300031474	Forest Soil	ASIPGTINKFFLDGGQLQSPREVNADVFIEPAVDPVDPKRNLLSLATMRTDCPQFGV
Ga0307374_106337672	3300031670	Soil	WIPKNTVVADRVFDHASIPATVSKFFQVDDVPRSPREENADVFIEPKAHPVEPQRNLLSLDVMRTDCPEFGV
Ga0307372_104094001	3300031671	Soil	IPKNTVVADRVFDHASIPATVSKFFQVDDVPRSPREENADVFIEPKADPVDPQRNLLSLDVMRTDCPEFGV
Ga0307471_1000516771	3300032180	Hardwood Forest Soil	ITKFFLGDYSPRSPRETSADIFIEPQAAPVDPARNLLSLDKMRTDCPDFDL
Ga0335081_116940513	3300032892	Soil	TKFFLGDYSPRSPRETSADVFIEPNTGTVDPTRNLLSLDIMRTDCPDFDV
Ga0310810_101107146	3300033412	Soil	ENRVFDHASIPGTVTKFFLGDFAARSPREVNADVFIEPQASPRADRNLLSLDTMRTDCPEFDV
Ga0370483_0011470_7_201	3300034124	Untreated Peat Soil	VNRTFDHASIPATVTKFFLGDYSPISPREANADMFIEPKGQAVDPARNLLSLATMRDDCPDFDV
Ga0370515_0286259_463_660	3300034163	Untreated Peat Soil	VVNRVFDHASIPGTITKFFLGTYAPRSPRESSADVFIEPNSGAVDPTRNLLSLNAVRTDCPDFDV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093583

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences