Metagenome Family F093582

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093582
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	69 residues
Representative Sequence	MPYALIVLAASIALTGVYVFVTEASYWSKALVTALLLVSFAWRYGLFLRVALGVFLALYFTYLKARWEHD
Number of Associated Samples	89
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	29.25 %
% of genes near scaffold ends (potentially truncated)	20.75 %
% of genes from short scaffolds (< 2000 bps)	83.02 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (55.660 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (24.528 % of family members)
Environment Ontology (ENVO)	Unclassified (33.962 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (33.019 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.20% β-sheet: 0.00% Coil/Unstructured: 39.80%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF16670	PI-PLC-C1	3.77
PF14078	DUF4259	2.83
PF00072	Response_reg	1.89
PF00932	LTD	1.89
PF00717	Peptidase_S24	0.94
PF14378	PAP2_3	0.94
PF02559	CarD_CdnL_TRCF	0.94
PF05154	TM2	0.94
PF13685	Fe-ADH_2	0.94
PF13437	HlyD_3	0.94
PF12395	DUF3658	0.94
PF02687	FtsX	0.94
PF02517	Rce1-like	0.94
PF13633	Obsolete Pfam Family	0.94
PF01408	GFO_IDH_MocA	0.94
PF09413	DUF2007	0.94
PF08668	HDOD	0.94
PF14319	Zn_Tnp_IS91	0.94
PF13646	HEAT_2	0.94
PF01041	DegT_DnrJ_EryC1	0.94
PF00078	RVT_1	0.94
PF13561	adh_short_C2	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.94
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.94
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.94
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.94
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.94
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG2314	Uncharacterized membrane protein YozV, TM2 domain, contains pTyr	General function prediction only [R]	0.94
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.94
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.66 %
Unclassified	root	N/A	44.34 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.66 %
Unclassified	root	N/A	44.34 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.66 %
Unclassified	root	N/A	44.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.34 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	25.47 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.83 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	1.89 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.34 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	24.53 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	2.83 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.89 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.94 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.34 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	13.21 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	2.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.83 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.89 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.94 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.34 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	13.21 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	2.83 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	2.83 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.89 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.94 %
Pirellulales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.34 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	13.21 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	2.83 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	1.89 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.89 %
Pirellulaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae	0.94 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.34 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	13.21 %
Geomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geomonas	2.83 %
unclassified Verrucomicrobia subdivision 3	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3	1.89 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.89 %
Rosistilla	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rosistilla	0.94 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.34 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	13.21 %
Geomonas propionica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geomonas → Geomonas propionica	2.83 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	1.89 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.89 %
Rosistilla	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rosistilla	0.94 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16727245	All Organisms → cellular organisms → Bacteria	15238	Open in IMG/M
3300001213\|JGIcombinedJ13530_103301844	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300001213\|JGIcombinedJ13530_107236703	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300001213\|JGIcombinedJ13530_107657238	Not Available	517	Open in IMG/M
3300001686\|C688J18823_10765406	Not Available	614	Open in IMG/M
3300004157\|Ga0062590_102189015	Not Available	578	Open in IMG/M
3300004693\|Ga0065167_1064527	Not Available	616	Open in IMG/M
3300004775\|Ga0007798_10029576	All Organisms → cellular organisms → Bacteria	1217	Open in IMG/M
3300004776\|Ga0007800_10009207	All Organisms → cellular organisms → Bacteria	2478	Open in IMG/M
3300005180\|Ga0066685_10368913	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	997	Open in IMG/M
3300005186\|Ga0066676_10237254	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1186	Open in IMG/M
3300005332\|Ga0066388_106914675	Not Available	571	Open in IMG/M
3300005447\|Ga0066689_10278506	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1034	Open in IMG/M
3300005556\|Ga0066707_10623622	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	685	Open in IMG/M
3300005557\|Ga0066704_10251194	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1200	Open in IMG/M
3300005764\|Ga0066903_101538055	Not Available	1258	Open in IMG/M
3300005831\|Ga0074471_10392602	All Organisms → cellular organisms → Bacteria	3416	Open in IMG/M
3300006034\|Ga0066656_10649235	Not Available	680	Open in IMG/M
3300006796\|Ga0066665_11330638	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	553	Open in IMG/M
3300006954\|Ga0079219_10397493	Not Available	912	Open in IMG/M
3300006954\|Ga0079219_11326989	Not Available	636	Open in IMG/M
3300007265\|Ga0099794_10182263	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geomonas → Geomonas propionica	1072	Open in IMG/M
3300009012\|Ga0066710_102381121	Not Available	768	Open in IMG/M
3300009012\|Ga0066710_104121979	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	543	Open in IMG/M
3300009090\|Ga0099827_10477242	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1070	Open in IMG/M
3300009091\|Ga0102851_10574564	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1173	Open in IMG/M
3300009091\|Ga0102851_11463419	Not Available	761	Open in IMG/M
3300009111\|Ga0115026_10282577	Not Available	1153	Open in IMG/M
3300009156\|Ga0111538_12346407	Not Available	670	Open in IMG/M
3300009167\|Ga0113563_11971881	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	697	Open in IMG/M
3300009175\|Ga0073936_10045919	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4124	Open in IMG/M
3300010333\|Ga0134080_10562046	Not Available	550	Open in IMG/M
3300010379\|Ga0136449_100338499	All Organisms → cellular organisms → Bacteria	2713	Open in IMG/M
3300010379\|Ga0136449_100905636	All Organisms → cellular organisms → Bacteria	1436	Open in IMG/M
3300010399\|Ga0134127_12358974	Not Available	611	Open in IMG/M
3300010400\|Ga0134122_10220548	All Organisms → cellular organisms → Bacteria	1584	Open in IMG/M
3300010401\|Ga0134121_13054122	Not Available	515	Open in IMG/M
3300012189\|Ga0137388_10141739	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2117	Open in IMG/M
3300012199\|Ga0137383_11190543	Not Available	548	Open in IMG/M
3300012202\|Ga0137363_10538604	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300012202\|Ga0137363_11143044	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	662	Open in IMG/M
3300012203\|Ga0137399_10651062	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300012207\|Ga0137381_10268551	All Organisms → cellular organisms → Bacteria	1484	Open in IMG/M
3300012207\|Ga0137381_11319694	Not Available	614	Open in IMG/M
3300012349\|Ga0137387_10499590	Not Available	883	Open in IMG/M
3300012354\|Ga0137366_11226461	Not Available	509	Open in IMG/M
3300012359\|Ga0137385_10989874	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	694	Open in IMG/M
3300012363\|Ga0137390_11352574	Not Available	657	Open in IMG/M
3300012683\|Ga0137398_10177434	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geomonas → Geomonas propionica	1396	Open in IMG/M
3300012685\|Ga0137397_10092025	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2215	Open in IMG/M
3300012685\|Ga0137397_10565171	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300012685\|Ga0137397_10667522	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300012917\|Ga0137395_10630867	Not Available	775	Open in IMG/M
3300012917\|Ga0137395_10686213	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geomonas → Geomonas propionica	741	Open in IMG/M
3300012922\|Ga0137394_10617085	Not Available	916	Open in IMG/M
3300012922\|Ga0137394_11200813	Not Available	622	Open in IMG/M
3300012925\|Ga0137419_10965072	Not Available	705	Open in IMG/M
3300012927\|Ga0137416_10826896	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300012989\|Ga0164305_11687727	Not Available	568	Open in IMG/M
3300014498\|Ga0182019_10322169	Not Available	1036	Open in IMG/M
3300014502\|Ga0182021_11414951	Not Available	838	Open in IMG/M
3300014502\|Ga0182021_13494526	Not Available	523	Open in IMG/M
3300014502\|Ga0182021_13500006	Not Available	522	Open in IMG/M
3300014502\|Ga0182021_13533956	Not Available	520	Open in IMG/M
3300014839\|Ga0182027_11025489	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	843	Open in IMG/M
3300014839\|Ga0182027_11454244	Not Available	676	Open in IMG/M
3300015241\|Ga0137418_10279681	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1403	Open in IMG/M
3300015245\|Ga0137409_10500311	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1039	Open in IMG/M
3300015371\|Ga0132258_13053743	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300018009\|Ga0187884_10146625	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rosistilla	997	Open in IMG/M
3300018016\|Ga0187880_1028669	All Organisms → cellular organisms → Bacteria	3193	Open in IMG/M
3300018019\|Ga0187874_10114981	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
3300018020\|Ga0187861_10026479	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	3347	Open in IMG/M
3300018083\|Ga0184628_10621687	Not Available	545	Open in IMG/M
3300018482\|Ga0066669_12189126	Not Available	524	Open in IMG/M
3300019082\|Ga0187852_1011124	All Organisms → cellular organisms → Bacteria	4914	Open in IMG/M
3300019890\|Ga0193728_1027817	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2816	Open in IMG/M
3300020000\|Ga0193692_1006727	All Organisms → cellular organisms → Bacteria	2909	Open in IMG/M
3300020158\|Ga0194038_1041804	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1438	Open in IMG/M
3300020163\|Ga0194039_1004584	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	6440	Open in IMG/M
3300020163\|Ga0194039_1182959	Not Available	712	Open in IMG/M
3300021070\|Ga0194056_10155265	Not Available	808	Open in IMG/M
3300021168\|Ga0210406_10508929	Not Available	951	Open in IMG/M
3300021478\|Ga0210402_10898346	Not Available	812	Open in IMG/M
3300022555\|Ga0212088_10016752	All Organisms → cellular organisms → Bacteria	10402	Open in IMG/M
3300025316\|Ga0209697_10051764	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3148	Open in IMG/M
3300025447\|Ga0208102_1016773	Not Available	1285	Open in IMG/M
3300027882\|Ga0209590_10432415	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	850	Open in IMG/M
3300027896\|Ga0209777_10462331	Not Available	943	Open in IMG/M
3300028283\|Ga0268283_1061521	Not Available	1141	Open in IMG/M
3300029799\|Ga0311022_11818607	Not Available	1039	Open in IMG/M
3300030000\|Ga0311337_10881303	Not Available	778	Open in IMG/M
3300031997\|Ga0315278_10528630	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1212	Open in IMG/M
3300032160\|Ga0311301_12311351	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300032173\|Ga0315268_10103603	All Organisms → cellular organisms → Bacteria	2684	Open in IMG/M
3300032256\|Ga0315271_11221125	Not Available	649	Open in IMG/M
3300032770\|Ga0335085_10476990	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	1429	Open in IMG/M
3300032828\|Ga0335080_11030191	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	837	Open in IMG/M
3300033402\|Ga0326728_10606429	Not Available	851	Open in IMG/M
3300033412\|Ga0310810_10115531	All Organisms → cellular organisms → Bacteria	3177	Open in IMG/M
3300033414\|Ga0316619_10075615	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2044	Open in IMG/M
3300033416\|Ga0316622_100664448	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1203	Open in IMG/M
3300033485\|Ga0316626_10867492	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300033513\|Ga0316628_102217525	Not Available	728	Open in IMG/M
3300033521\|Ga0316616_102841599	Not Available	652	Open in IMG/M
3300034128\|Ga0370490_0257776	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.17%
Host-Associated	Host-Associated	1.89%
Engineered	Engineered	0.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.87%
Aquatic	Environmental → Aquatic	28.30%
Plants	Host-Associated → Plants	1.89%
Bioreactor	Engineered → Bioreactor	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.98%
Freshwater	Environmental → Aquatic → Freshwater	22.64%
Marine	Environmental → Aquatic → Marine	2.83%
Sediment	Environmental → Aquatic → Sediment	1.89%
Peat	Environmental → Terrestrial → Peat	1.89%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.94%
Anaerobic	Engineered → Bioreactor → Anaerobic	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	14.15%
Lake	Environmental → Aquatic → Freshwater → Lake	9.43%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.55%
Lentic	Environmental → Aquatic → Freshwater → Lentic	4.72%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.83%
Loam	Environmental → Terrestrial → Soil → Loam	2.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.89%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.94%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.94%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.38%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.55%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	6.60%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	6.60%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.72%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	3.77%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	2.83%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.83%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	2.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.94%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.94%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.94%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	24.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.55%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.60%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	6.60%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.72%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	3.77%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.77%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	2.83%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	2.83%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	2.83%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	2.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.83%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.89%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.94%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.94%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.94%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.94%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.94%
Anaerobic Digester Digestate	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Digestate	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004693	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA7.5M (version 2)	Environmental	Open in IMG/M
3300004775	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA17M	Environmental	Open in IMG/M
3300004776	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA14M	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005831	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.43_YBM	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009175	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020000	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1	Environmental	Open in IMG/M
3300020158	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-6m	Environmental	Open in IMG/M
3300020163	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-8m	Environmental	Open in IMG/M
3300021070	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L442-13m	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022555	Alinen_combined assembly	Environmental	Open in IMG/M
3300025316	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG (SPAdes)	Environmental	Open in IMG/M
3300025447	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA17M (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300028283	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_36m	Environmental	Open in IMG/M
3300029799	Metagenomes from anaerobic digester of solid waste, Toronto, Canda. Combined Assembly of Gp0238878, Gp0238879, Gp0242100, Gp0242119	Engineered	Open in IMG/M
3300030000	I_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300032256	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300034128	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_03651590	2088090014	Soil	MPYGTIVTVAAIVLAGAYVCVTEASFWSKGLVTVLLLVSLGWRYGFFVQIGLGVFLAFYFTYYKARWKEKG
JGIcombinedJ13530_1033018442	3300001213	Wetland	MPYGLIVLIASVALVAVFVFVTETPFWSKVIVGGLLFLSFQWRYGLFLRAALGVFLSLYFVYLKSLSEPD*
JGIcombinedJ13530_1072367031	3300001213	Wetland	MPYGLIVTVVAVALSAVYVFASEESTGSKGLVAGLLAVSFLWRYGIFLRVGLGVGLSLYFTYVKSR*
JGIcombinedJ13530_1076572382	3300001213	Wetland	MPYGLIVMVASTALAAVYVFAADAPYWRKALVVTLLLVSFAWRYGLFLQVALGISLSFYFTY
C688J18823_107654062	3300001686	Soil	MPYGLIVLFASIALTAVYVFAAEAAVWLKVLIGAALLFSFAWRYGLFLRVALVIFISLYFTWLKSRSSSDE*
Ga0062590_1021890151	3300004157	Soil	MPYGLIVLFASIAIAGVYVVASHAPIWSKVLVSALLLVSFAWRYGLFLRAGLVVFLSLYFIYLKSCSGRGE*
Ga0065167_10645272	3300004693	Freshwater	QLPGLAALIVKQRPTYMPYALIVLAASIALTGVYVFVTEASYWSKALVTALLLVSFAWRYGLFLRVALGVFLALYFTYLKARWEHD*
Ga0007798_100295763	3300004775	Freshwater	RLTNRGSQRRETVSRRIGRQLPGLAALIVKQRPTYMPYALIVLAASIALTGVYVFVTEASYWSKALVTALLLVSFAWRYGLFLRVALGVFLALYFTYLKARWEHD*
Ga0007800_100092073	3300004776	Freshwater	LPGLAALIVKQRPTYMPYALIVLAASIALTGVYVFVTEASYWSKALVTALLLVSFAWRYGLFLRVALGVFLALYFTYLKARWEHD*
Ga0066685_103689133	3300005180	Soil	IALAGVYVFGTDASLWSKALVTGLLFVSFLWRYGFFLRVALGILFCLYFTYLKARSSTK*
Ga0066676_102372543	3300005186	Soil	MPYGLIVLVVTIALAGVYVFGTDASLWSKALVTGLLLVSFLWRYGFFLRVALGILLCLYFTCLKARSSTK*
Ga0066388_1069146751	3300005332	Tropical Forest Soil	MPYGLIVTVAAIALTGVYVCLTEASFWWKGLVTVLLLVSLAWRYGFFLQVGLGVFLGFYFTYYKARWQK*
Ga0066689_102785063	3300005447	Soil	MVATIALAGVYVLATEASLWSKALVTGLLFVSFLWRYGFFLRVALGIFLCLYFRHLKARSSRS*
Ga0066707_106236221	3300005556	Soil	CYDYDSFVFLAYPIIATIALAGVYVLATEASLWSKALVTGLLFVSFLWRYGFFLRVALGIFLCLYFRHLKARSSRS*
Ga0066704_102511943	3300005557	Soil	MPYALIVMVATIALAGVYVLATEASLWSKALVTGLLFVSFLWRYGFFLRVALGILLCLYFTYLKARSSTK*
Ga0066903_1015380552	3300005764	Tropical Forest Soil	MLAAIALTCVYVFVSEAPLWAKALVAGLLVVSFVWRYGIFVQAGLGIFLSLYFTYLRCRSDME*
Ga0074471_103926023	3300005831	Sediment (Intertidal)	MPYALIVMVASIALTVVYVFVTEAPYWSKALVTALLLVSFAWRYGLFLRVALGVFLALYFTYLKARWEHD*
Ga0066656_106492352	3300006034	Soil	MPYGLIVLVVTIALAGVYVFGTDASLWSKALVTGLLFVSFLWRYGFFLRVALGILFCLYFTYLKARSSTK*
Ga0066665_113306382	3300006796	Soil	MPYGLIVLVVTIALAGVYVFGTDASLWSKALVTGLLFVSFLWRYGFFLRVALGILLCFYFTYLKARSSTK*
Ga0079219_103974932	3300006954	Agricultural Soil	MPYGLIVLVASIALTVVYVFVTDASYWSKVLVTALLLVSFAWRYGFYLRTGLGVFLALYFTYLKARWEHD*
Ga0079219_113269892	3300006954	Agricultural Soil	MPYTLIVTIAAIALAGVYVCVMEASFWSKGLVTVLLLASFVWRYGFFLQVGLGVFLAYYFTYYKARWRK*
Ga0099794_101822632	3300007265	Vadose Zone Soil	MPYALIVTVAAIALTGVYVCVTHASNWSEALVTAVLLVSFAWRYGFYLQVGLGIFLAFYFTYVKARWQDD*
Ga0066710_1023811212	3300009012	Grasslands Soil	MPYGLIALIGSIGLTAVYVFVSEARLWSKILISVLLGVSFVWRYGLFLQVALGLFLSLYFTYLRSRW
Ga0066710_1041219791	3300009012	Grasslands Soil	MPYALIVLVVTIALAGVYVFGTDASLWSKALVTGLLLVSFLWRYGFFLRVALGILLCLYFTCLKARSSTK
Ga0099827_104772422	3300009090	Vadose Zone Soil	MPYGLIVLVVTIALAGVYVFGTDASLWSKALVTGLLFLSFLWRYGFFLRVALGILLCLYFTYLKARSSRS*
Ga0102851_105745642	3300009091	Freshwater Wetlands	MPYGSVPLIASIALTGGYVFATEASFWSKALVVGLLVVSLVWRYGLFLQVALSVFLLLYFTYLKSRA*
Ga0102851_114634191	3300009091	Freshwater Wetlands	MAYGLIVLVASIALTAVYVFVTHAPCWSKALVVALLLVSFAWRYGLFLRVALGI
Ga0115026_102825772	3300009111	Wetland	MAYGLIVLVASIALTAVYVFVTHAPCWSKALVVALLLVSFAWRYGLFLRVALGIFLSFYFVYLKSRSGTD*
Ga0111538_123464072	3300009156	Populus Rhizosphere	MPYGLIVLFASIAIAGVYVVASHAPIWSKVLVSALLLVSFAWRYGLFLRAGLVVFLSLYFIYLKSRSGRGE*
Ga0113563_119718811	3300009167	Freshwater Wetlands	YGSVPLIASIALTGGYVFATEASFWSKALVVGLLVVSLVWRYGLFLQVALSVFLLLYFTYLKSRA*
Ga0073936_100459194	3300009175	Freshwater Lake Hypolimnion	MPYGLIVMVASVALAGVYVFATEASSWSKGLVVGLLLLSCVWRYGVFFQVVLGVYLSLYFTYLKSRSERD*
Ga0134080_105620462	3300010333	Grasslands Soil	MPYGLIVLVVTIALAGVYVFGTDASLWSKALVTGLLFVSFLWRYGFFLRVALGILLCLYFTYLKARSS
Ga0136449_1003384994	3300010379	Peatlands Soil	MPYALIVLVVSIALSVVYVFVTDASSWSKALVMALLLLSFAWRYGFFLRVALGVFLSLYFMYLKARWEHD*
Ga0136449_1009056362	3300010379	Peatlands Soil	MVASIALAGVYVFASEESFWSKALVAGLLLVSFVWRYGMLLQAALGIVLSLYFTYLKSRS
Ga0134127_123589741	3300010399	Terrestrial Soil	MPYGLIVLFASIAIAGVYFVASRAPIWSKVLVSALLLVSFAWRYGLFLRAGLVVFLSLYFIYLKSRSGRGE*
Ga0134122_102205482	3300010400	Terrestrial Soil	MPYGLIALVVSIALAGVYVFVTDTAYWSKALVAGLFVVSVLWRYGMYLQVALSISLSLYFTYLKSRS*
Ga0134121_130541222	3300010401	Terrestrial Soil	MPHGFIPLIAAIALTGVCVFVTEVSFWLKALVVGMLVMSLVWRYGLFLQVGLSLFLLLYFTYLKARG*
Ga0137388_101417392	3300012189	Vadose Zone Soil	MPYSLIVLVVTIALAGVYVFGTDASLWSKALVTGLLFLSFLWRYGFFLRVALGILLCLYFTYLKARSSRS*
Ga0137383_111905431	3300012199	Vadose Zone Soil	ALIGSIALTAVYVFVTEARLWSKILIAALLGVSFVWRYGLFLQVAISIFLSFYFIYLRSRW*
Ga0137363_105386042	3300012202	Vadose Zone Soil	MPYALIVTVAAIALTGVYVCVTHASNWSKALVTAVLLVSFAWRYGFYLQVGLGIFLAFYFTYVKARWQDD*
Ga0137363_111430442	3300012202	Vadose Zone Soil	VTIALAGVYVFGTDASLWSKALVTGLLFLSFLWRYGFFLRVALGILLCLYFTYLKA
Ga0137399_106510622	3300012203	Vadose Zone Soil	MPYALIVTVAATALAGVYVCVTQASNWSKALVTAVLLVSFAWRYGFYVQVGLGVFLAFYFTYVKARWQGD*
Ga0137381_102685512	3300012207	Vadose Zone Soil	MPYGLIVLVVTIALAGVYVFGTDASLWSKALVTGLLFVSFLWRYGFFLRVALGILLCLYFTCLKARSSTK*
Ga0137381_113196942	3300012207	Vadose Zone Soil	MPYGIIVTVAAVGLTGVYVCLTHASNWSKALVTALLLVSFAWRYGFYVQVGLGVFLAFYFTYVKA
Ga0137387_104995901	3300012349	Vadose Zone Soil	TKRLRTIMPYGLIVLVVTIALAGVYVFGTDASLWSKALVTGLLFVSFLWRYGFFLRVALGILLCLYFTYLKARSSTK*
Ga0137366_112264611	3300012354	Vadose Zone Soil	MPYGFIVLVASIALTAVYVLASEASFWSKSLVAGLLLISFFAPYGLFLRVALSDFLSLH
Ga0137385_109898741	3300012359	Vadose Zone Soil	MPYGLIVLVVTIALAGVYVFGTDASLWSKALVTGLLFVSFLWRYGFFLRVALGILLCLYFTYLKARSSTK*
Ga0137390_113525742	3300012363	Vadose Zone Soil	VTLTAVYVLATEASRWSKALLTVLLLASLVWRYGLYLQVILGVFLSLYFAYLNSRS*
Ga0137398_101774343	3300012683	Vadose Zone Soil	VGDETYDYMPYGIIVTVAAVGLTGVYVCLTHASNWSKALVTAVLLVSFAWRYGFYLQLGLGVFLAFYFTYVKARWQDD*
Ga0137397_100920252	3300012685	Vadose Zone Soil	MPYALIVTVAATALAGVYVWVTHASNWSKALVTAVLLVSFAWRYGFYLQVGLRVFLAF*
Ga0137397_105651712	3300012685	Vadose Zone Soil	LVVTIALAGVYVFGTEASLWSKTLVTGLLFVSFLWRYGFFLRVALGNLLGLYFTCLKARSSRS*
Ga0137397_106675222	3300012685	Vadose Zone Soil	MGLRYDRDQIMAYTFIVLVASIALTAVYVFATEASYWSKGLVVGLLLLSFAWRYGLFLRAGLGLFLCLYFTYLKSRSDRG*
Ga0137395_106308671	3300012917	Vadose Zone Soil	MPYGLIVLFASIALAAVYVFVTHTPIWSKVLVAGLLLFSFAWRYGFFLRVALSI
Ga0137395_106862132	3300012917	Vadose Zone Soil	MPYALIVTVAAIALTDVYVCVTHASNWSKALVTAVLLVSFAWRYGFYLQVGLGIFLAFYFTYVKARWQDD*
Ga0137394_106170851	3300012922	Vadose Zone Soil	MPYALIVTVAAIALTGVYVCVTQASNWSKALLTVLLLLSFAWRYGFYLQLALGVFLAFYFTYVKARWQDD*
Ga0137394_112008132	3300012922	Vadose Zone Soil	MGYGLIPLLASIALTGVYVFVTEASLWSKALVAGLLAVSLVWRYGLYLQVGLGVFLVLYFMYLRSRP*
Ga0137419_109650722	3300012925	Vadose Zone Soil	MGYGLIPLIASIALTGVYVFVTEASLWSKALVAGLLGVSLVWRYGLFLQVGLGVFLVLYFTYLRSRP*
Ga0137416_108268962	3300012927	Vadose Zone Soil	MPYALIVAVAAVALAGVYACVTEASFWSKGLVTVLLLVSFAWRYGFFLQVGLGVFLAFYFRYYKARWRDD*
Ga0164305_116877272	3300012989	Soil	MLYGLIVLFASIALAAVYVVVTDTPIWSKVLVAGLLLFSFAWRYGLFLRVALSVFLSLYFTYLKSRSDRE*
Ga0182019_103221692	3300014498	Fen	MPYALIVLVASIALTVVYVFVTDASYWSKALVTALLLVSFAWRYGFYLRAGLGVFLALYFTYLKARWEHD*
Ga0182021_114149511	3300014502	Fen	PGVAEFGKRFPEHMPYGLIVLVLVIALAGVYVFAAEVSFWSKALVAGLLLLSFAWRYGLFLRVALGVFLALYFAYLKARSEGPS*
Ga0182021_134945261	3300014502	Fen	MPYGLIVLVASIALTVVYVFVTDASYWSKALVTALLLVSFAWRYGFYLRAGLGVVLALYFTYLKARWEHD*
Ga0182021_135000062	3300014502	Fen	MPYGLIVIIASISLVGVYVFATEACWWAKALVAALLVGSFYWQYGLFLRVGLGVSLSLYFTYLKSRG*
Ga0182021_135339561	3300014502	Fen	MVASIALAGVYVFASEESFWSKALVAGLLLVSFAWRYGLFLQVALGIFLSLYFTHLKSRS
Ga0182027_110254892	3300014839	Fen	MVASIALAGVYVFAAEASFWSKGLVAGLLLVSFVWRYGFFLRVALGVFLSLYFTYLKSRSERE*
Ga0182027_114542441	3300014839	Fen	MPYGLIVLVVSIALTGVYVFATEASFWSKSLMAGLLLVSFVWHYGFFLRAALGIFLSLYFTYLESRS*
Ga0137418_102796811	3300015241	Vadose Zone Soil	MPYGLIVLVAVIALTAVYVFVTETSAPSKAFVVGVLLASFVWRHGLFLQVALGIFLSLYFTYLKSRSGGRGI*
Ga0137409_105003112	3300015245	Vadose Zone Soil	MPYALIVTVAAIALTGVYVCVTHASNWSKALVTVLLLVSFAWRYGFYLQVGLGVFLAF*
Ga0132258_130537432	3300015371	Arabidopsis Rhizosphere	MPYALIVTVAAIVLAGLYVVATEGSFWSKGLVTVLLLVSFEWRYGFFVQAGLAIFLAFYFRYLKARWKG*
Ga0187884_101466252	3300018009	Peatland	MVASIALAGVYVFASEESFWSKALVAGLLLVSFVWRYGLFLQVALGIVLSLYFTHLKSRS
Ga0187880_10286692	3300018016	Peatland	MPYGLIVMVASIALAGVYVFASEESFWSKALVAGLLLVSFVWRYGLFLQVALGIVLSLYFTHLKSRS
Ga0187874_101149812	3300018019	Peatland	MVASIALTGVYVFASEESFWSKALVAGLLLVSFVWRYGLFLQVALGIVLSLYFTHLKSRS
Ga0187861_100264791	3300018020	Peatland	ALIVLVASIALTAVYIFVTEASYWSKALVGALLLVSFAWRYGLFLRVALGVFLSLYFTYLKARWEHD
Ga0184628_106216871	3300018083	Groundwater Sediment	MPYGFIVTVAAIALAGVYVFASEASFWSKALVAGLLLASFAWRYGLFLQVALSIILSLYFTYLKSRS
Ga0066669_121891261	3300018482	Grasslands Soil	VPYGLIVLLASIALTVVYVFVTEAPIWAKALVAGLLLVSFVWRYGMFLRVGLGIFLSLYFTYLRSRSEKD
Ga0187852_10111246	3300019082	Peatland	VRTDMPYGLIVMVASIALAGVYVFASEESFWSKALVAGLLLVSFVWRYGLFLQVALGIVLSLYFTHLKSRS
Ga0193728_10278171	3300019890	Soil	MPYALIVLLASIALTIVYFFVTDASYWSKALVTALLLGSFAWRYGFYLRAGLGVLLALYFTYLKARWKDD
Ga0193692_10067272	3300020000	Soil	MPYGLIVLFASIALAAVYVFATDTPIWSKGVVAALLLFSFAWRYGLFLRVGLSVFLSLYFTYLKSGSDRE
Ga0194038_10418044	3300020158	Anoxic Zone Freshwater	MPYALIVLAASIALTGVYVFVTEASYWSKALVTALLLVSFAWRYGLFLRVALGVFLALYF
Ga0194039_10045845	3300020163	Anoxic Zone Freshwater	MPYALIVLAASIALTGVYVFVTEASYWSKALVTALLLVSFAWRYGLFLRVALGVFLALYFTYLKARWEHD
Ga0194039_11829591	3300020163	Anoxic Zone Freshwater	MVASVALAGVYVFATEASSWSKGLVVGLLLLSCVWRYGIFLQVALGVFLSLYFTHLKSRSERD
Ga0194056_101552652	3300021070	Anoxic Zone Freshwater	MPYGLIVMVASVALAGVYVFATESSSWSKGLVVGLLLLSCVWRYGVFFQVALGVFLSLYFTYLKSRSERD
Ga0210406_105089292	3300021168	Soil	MPYALIVTVAAIALAGIYVCVTEASFWSKGLVTVLLLISLAWTHGFFLQVGLGVFLAYYFTYHKARWQK
Ga0210402_108983461	3300021478	Soil	MPYALIVTVAAVALAGVYVCVTEASFWSKGLVTVVLLASLVWRYGFFLQMGLGVFLAYYFTYHKARWQK
Ga0212088_100167528	3300022555	Freshwater Lake Hypolimnion	MVASVALAGVYVFATEASSWSKGLVVGLLLLSCVWRYGVFFQVVLGVYLSLYFTYLKSRSERD
Ga0209697_100517642	3300025316	Freshwater Lake Hypolimnion	MPYGLIVMVASVALAGVYVFATEASSWSKGLVVGLLLLSCVWRYGVFFQVVLGVYLSLYFTYLKSRSERD
Ga0208102_10167733	3300025447	Freshwater	LYQLPGLAALIVKQRPTYMPYALIVLAASIALTGVYVFVTEASYWSKALVTALLLVSFAWRYGLFLRVALGVFLALYFTYLKARWEHD
Ga0209590_104324152	3300027882	Vadose Zone Soil	MPYGLIVLVVTIALAGVYVFGTDASLWSKALVTGLLFLSFLWRYGFFLRVALGILLCLYFTYLKARSSRS
Ga0209777_104623312	3300027896	Freshwater Lake Sediment	PYGFLALIASIALTGVYIFASEASFWSKALVAGLLAVSLVWRYGMFLQVALSIILSLYFTYLRARA
Ga0268283_10615212	3300028283	Saline Water	MPYALIVLAASIALTGVYVFATEASYWSKALVTALLLVSLAWRYGLFLRVALGVFLALYFTYLKARWEHD
Ga0311022_118186073	3300029799	Anaerobic Digester Digestate	MPYGLIVLVASVALVVVYVFVTDAAFWSKALVAGLLLLSFAWRYGTFLQAALGVFLSLYFTYLKSRAERG
Ga0311337_108813031	3300030000	Fen	MPRAGGAGWLMRHVKRLPILMPYGLIVLVASIALTVVYVFVTDASYWSKALMTALLLVSFAWRYVFYLRAGLGVFLALYFTYLKARWERD
Ga0315278_105286302	3300031997	Sediment	MPYGLIPLVAAIALTGVYVFVTEASPWSKALVVGLLVVSFLWRYGLFLQIGLSILLLLYFTYLKARS
Ga0311301_123113511	3300032160	Peatlands Soil	MPYALIVLVVSIALSVVYVFVTDASSWSKALVMALLLLSFAWRYGFFLRVALGVFLSLYFMYLKARWEHD
Ga0315268_101036034	3300032173	Sediment	MPYGFIPLIAAVALTGAYVFVAEASLWAKALVVGLLAVSLVWRYGLFLQVILSVVLLLYFRYLKSRA
Ga0315271_112211252	3300032256	Sediment	MAYGLIALVAAIALTGVYVLGTEAALWTKALVLVLLLGSFAWRYGFLMRVALAIYLSFYFTYCKARSDNA
Ga0335085_104769902	3300032770	Soil	MPYGFIVLVATIALAVVYVFVSEASLWSKGLVTGLLLLSFVWRYGFLLQTALGVLLCLYFTYLKAQSGRG
Ga0335080_110301912	3300032828	Soil	MPYGLVVLVAAIALTIVYVFLTDTSAWSKALVVGVLLASLIWRYGLFLQVALGIFLCLYFTYLKSRSS
Ga0326728_106064291	3300033402	Peat Soil	MPYGLIVLVASVALTGVYVFATDAFFWSKSLMAGLLLLSFMWRYGLFLRVAIGVFLSLYFTYLKSRWERD
Ga0310810_101155314	3300033412	Soil	MPYTLIVTIAAIALAGVYVCVTEASFWSKGLVTGVLLASFLWRYGFFLQEGLGVFLAYYFTYYKARWQK
Ga0316619_100756152	3300033414	Soil	MPYGSVPLIASIALTGGYVFATEASFWSKALVVGLLVVSLVWRYGLFLQVALSVFLLLYFTYLKSRA
Ga0316622_1006644482	3300033416	Soil	MAYGLIVLVASIALTAVYVFVTHAPCWSKALVVALLLVSFAWRYGLFLRVALGIFLSFYFVYLKSRSGTD
Ga0316626_108674921	3300033485	Soil	RHRVWPNTTVERRPIQMAYGLIVLVASIALTAVYVFVTHAPCWSKALVVALLLVSFAWRYGLFLRVALGIFLSFYFVYLKSRSGTD
Ga0316628_1022175251	3300033513	Soil	MPYGVIVLVASITLTGLYIFLTDASYWSKALVVALLLVSFAWRYGLFLQVALGIFLSLYFTYLKSRSERG
Ga0316616_1028415991	3300033521	Soil	MPYGSVPLIASIALTGGYVFATEASFWSKALVVGLLVVSLVWRYGLFLQVALSVFLLLYFSYLK
Ga0370490_0257776_270_473	3300034128	Untreated Peat Soil	MPYGLIVLVASIALAGVYVFVSEASSWSKCLVAGLLLFSFMWRYGMFVQVALGIFLSLYFAYLKARV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F093582

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences