Metagenome Family F093551

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093551
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	42 residues
Representative Sequence	MIATSHIENGAVAQMRMTPSEKPSSEVVCLVDDDPMVL
Number of Associated Samples	86
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	68.87 %
% of genes near scaffold ends (potentially truncated)	97.17 %
% of genes from short scaffolds (< 2000 bps)	91.51 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.113 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (30.189 % of family members)
Environment Ontology (ENVO)	Unclassified (43.396 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.887 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.70% β-sheet: 0.00% Coil/Unstructured: 80.30%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.18
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.18
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00196	GerE	31.13
PF00072	Response_reg	21.70
PF02518	HATPase_c	6.60
PF08447	PAS_3	5.66
PF00581	Rhodanese	4.72
PF16576	HlyD_D23	4.72
PF12848	ABC_tran_Xtn	0.94
PF00211	Guanylate_cyc	0.94
PF07859	Abhydrolase_3	0.94
PF13242	Hydrolase_like	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.94
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.11 %
Unclassified	root	N/A	1.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.11 %
Unclassified	root	N/A	1.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.11 %
Unclassified	root	N/A	1.89 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	63.21 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %
Unclassified	root	N/A	1.89 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.94 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	63.21 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %
Unclassified	root	N/A	1.89 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	49.06 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	7.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %
Unclassified	root	N/A	1.89 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.94 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	0.94 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	49.06 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	7.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %
Unclassified	root	N/A	1.89 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.94 %
unclassified Opitutae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae	0.94 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	49.06 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	7.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %
Unclassified	root	N/A	1.89 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.94 %
Opitutae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	49.06 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	6.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %
Unclassified	root	N/A	1.89 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.94 %
Opitutae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	49.06 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %
Unclassified	root	N/A	1.89 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.94 %
Opitutae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000363\|ICChiseqgaiiFebDRAFT_13605111	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	562	Open in IMG/M
3300004643\|Ga0062591_101935257	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	606	Open in IMG/M
3300005175\|Ga0066673_10598560	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	642	Open in IMG/M
3300005181\|Ga0066678_10327298	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1008	Open in IMG/M
3300005445\|Ga0070708_100830129	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300005447\|Ga0066689_10114365	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1566	Open in IMG/M
3300005467\|Ga0070706_100002438	All Organisms → cellular organisms → Bacteria	18748	Open in IMG/M
3300005536\|Ga0070697_100640578	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	936	Open in IMG/M
3300005536\|Ga0070697_102101829	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300005548\|Ga0070665_100341363	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1502	Open in IMG/M
3300005552\|Ga0066701_10307085	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300005553\|Ga0066695_10598913	All Organisms → cellular organisms → Bacteria → Proteobacteria	661	Open in IMG/M
3300005553\|Ga0066695_10649279	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300005559\|Ga0066700_10577230	Not Available	784	Open in IMG/M
3300005559\|Ga0066700_11071604	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300005566\|Ga0066693_10376275	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	574	Open in IMG/M
3300005566\|Ga0066693_10385622	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	568	Open in IMG/M
3300005568\|Ga0066703_10364829	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300005568\|Ga0066703_10627630	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300005568\|Ga0066703_10694274	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	586	Open in IMG/M
3300005576\|Ga0066708_10745142	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300005587\|Ga0066654_10080900	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1522	Open in IMG/M
3300006797\|Ga0066659_11908866	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300009012\|Ga0066710_102831509	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	684	Open in IMG/M
3300009137\|Ga0066709_100896132	All Organisms → cellular organisms → Bacteria	1292	Open in IMG/M
3300009137\|Ga0066709_102538279	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300010301\|Ga0134070_10074667	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1161	Open in IMG/M
3300010325\|Ga0134064_10029068	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1613	Open in IMG/M
3300010329\|Ga0134111_10153748	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300010333\|Ga0134080_10069060	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1415	Open in IMG/M
3300010364\|Ga0134066_10140159	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	748	Open in IMG/M
3300010397\|Ga0134124_10254873	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1616	Open in IMG/M
3300012198\|Ga0137364_11121571	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	591	Open in IMG/M
3300012200\|Ga0137382_10433475	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	929	Open in IMG/M
3300012202\|Ga0137363_11189835	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300012205\|Ga0137362_10584535	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	963	Open in IMG/M
3300012205\|Ga0137362_10783852	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	817	Open in IMG/M
3300012206\|Ga0137380_10284555	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1484	Open in IMG/M
3300012207\|Ga0137381_10092746	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2551	Open in IMG/M
3300012207\|Ga0137381_10734350	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	857	Open in IMG/M
3300012210\|Ga0137378_10384508	All Organisms → cellular organisms → Bacteria → Proteobacteria	1303	Open in IMG/M
3300012211\|Ga0137377_10226893	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1794	Open in IMG/M
3300012285\|Ga0137370_10037875	All Organisms → cellular organisms → Bacteria	2542	Open in IMG/M
3300012356\|Ga0137371_10273055	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1319	Open in IMG/M
3300012356\|Ga0137371_10547426	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	891	Open in IMG/M
3300012357\|Ga0137384_10632516	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	872	Open in IMG/M
3300012357\|Ga0137384_10852466	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	735	Open in IMG/M
3300012357\|Ga0137384_11464205	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300012359\|Ga0137385_10387246	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1193	Open in IMG/M
3300012361\|Ga0137360_10696545	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300012361\|Ga0137360_10894209	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	765	Open in IMG/M
3300012361\|Ga0137360_11467558	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300012362\|Ga0137361_10260454	All Organisms → cellular organisms → Bacteria	1581	Open in IMG/M
3300012362\|Ga0137361_11639514	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	564	Open in IMG/M
3300012582\|Ga0137358_10016758	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	4659	Open in IMG/M
3300012582\|Ga0137358_10237362	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1242	Open in IMG/M
3300012683\|Ga0137398_10176646	All Organisms → cellular organisms → Bacteria	1399	Open in IMG/M
3300012685\|Ga0137397_10022007	All Organisms → cellular organisms → Bacteria	4489	Open in IMG/M
3300012923\|Ga0137359_10918930	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	754	Open in IMG/M
3300012929\|Ga0137404_11064246	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	741	Open in IMG/M
3300012929\|Ga0137404_11417898	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	642	Open in IMG/M
3300012930\|Ga0137407_10153835	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2034	Open in IMG/M
3300012930\|Ga0137407_11074164	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	763	Open in IMG/M
3300012930\|Ga0137407_12172899	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300012975\|Ga0134110_10330684	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	663	Open in IMG/M
3300012976\|Ga0134076_10578397	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300012977\|Ga0134087_10371185	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	689	Open in IMG/M
3300014150\|Ga0134081_10123184	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	833	Open in IMG/M
3300014154\|Ga0134075_10454446	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	570	Open in IMG/M
3300014166\|Ga0134079_10227843	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	795	Open in IMG/M
3300015374\|Ga0132255_104761540	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	575	Open in IMG/M
3300018433\|Ga0066667_10092063	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1990	Open in IMG/M
3300019888\|Ga0193751_1104703	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1082	Open in IMG/M
3300020006\|Ga0193735_1041895	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	1378	Open in IMG/M
3300020022\|Ga0193733_1087777	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300020062\|Ga0193724_1120944	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	518	Open in IMG/M
3300025906\|Ga0207699_11199850	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	562	Open in IMG/M
3300025918\|Ga0207662_11021501	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	587	Open in IMG/M
3300025931\|Ga0207644_10869945	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300026305\|Ga0209688_1009287	All Organisms → cellular organisms → Bacteria	1838	Open in IMG/M
3300026307\|Ga0209469_1034575	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1674	Open in IMG/M
3300026316\|Ga0209155_1087552	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1152	Open in IMG/M
3300026318\|Ga0209471_1029541	All Organisms → cellular organisms → Bacteria	2691	Open in IMG/M
3300026324\|Ga0209470_1079504	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1504	Open in IMG/M
3300026326\|Ga0209801_1282077	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	601	Open in IMG/M
3300026327\|Ga0209266_1291937	Not Available	513	Open in IMG/M
3300026330\|Ga0209473_1084702	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1333	Open in IMG/M
3300026330\|Ga0209473_1214403	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	715	Open in IMG/M
3300026332\|Ga0209803_1125985	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300026342\|Ga0209057_1041925	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2256	Open in IMG/M
3300026343\|Ga0209159_1061667	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	1774	Open in IMG/M
3300026359\|Ga0257163_1088827	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300026498\|Ga0257156_1026225	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1171	Open in IMG/M
3300026527\|Ga0209059_1020208	All Organisms → cellular organisms → Bacteria	3025	Open in IMG/M
3300026528\|Ga0209378_1171246	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300026540\|Ga0209376_1370218	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	538	Open in IMG/M
3300026548\|Ga0209161_10086009	All Organisms → cellular organisms → Bacteria	1932	Open in IMG/M
3300026550\|Ga0209474_10698653	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	525	Open in IMG/M
3300028784\|Ga0307282_10105878	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
3300031057\|Ga0170834_107825670	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	538	Open in IMG/M
3300031122\|Ga0170822_10674356	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	554	Open in IMG/M
3300031231\|Ga0170824_125901698	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	603	Open in IMG/M
3300031474\|Ga0170818_103431488	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	849	Open in IMG/M
3300031962\|Ga0307479_11344780	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300032076\|Ga0306924_12481248	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	520	Open in IMG/M
3300032180\|Ga0307471_100315561	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1657	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.17%
Host-Associated	Host-Associated	2.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.17%
Plants	Host-Associated → Plants	2.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	89.62%
Loam	Environmental → Terrestrial → Soil → Loam	7.55%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	46.23%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	33.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.49%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.66%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.89%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	30.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	30.19%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	10.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026305	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)	Environmental	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_136051113	3300000363	Soil	MCGMIATSHIENRAVAQMRMTPVEKSDTEIVCLVDDDPSVLRS
Ga0062591_1019352571	3300004643	Soil	MSDIENKPVAQMRLPPRENPSSEIVCLVDDDPMVLRSTGRLL
Ga0066673_105985601	3300005175	Soil	MWGMIATSHIENGAIAQMRMTPAEEPSAVVVCVVDDDPMMLRAMGRLL
Ga0066678_103272984	3300005181	Soil	MCDMIATSYIENDAAVQMRMMPAEEPSSEIVCLVDDDPLV
Ga0070708_1008301293	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MPDIENKPASQMRMTPREKPSSEIVCLVDDDPLVLRSTGLLLA
Ga0066689_101143654	3300005447	Soil	MYGMLAMSNIENGPDAQLRITPTEKPSPEIVCLVDDDPLVLRST
Ga0070706_1000024386	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MYGMIVECHIENEASAQMRMTPSEKSYSEIVCLVDDDPAVLKSLG*
Ga0070697_1006405782	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MIATSHIEMGAVAQKRTTPSEKPSSDIVCLVDDDPMVLRSTG
Ga0070697_1021018291	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MLAMPHIENRADAQMRITPTEKPSSEIVCLVDDDPLVLRSTGL
Ga0070665_1003413634	3300005548	Switchgrass Rhizosphere	MSHTEIGAVAQRPTTPSEDPSSEIVCLVDDDPMVLRSTG
Ga0066701_103070851	3300005552	Soil	MPDIENRADAQMRMTPTEKPSSEIVCLVDDDPLVL
Ga0066695_105989131	3300005553	Soil	MYGMVATSHIENGPDAQLRITPAEKPSPEIVCLVDDDPLVLRSTGL
Ga0066695_106492792	3300005553	Soil	MWDMIATSYPENRASAQMRMTPSEKPSSEIVCLVDDDP
Ga0066700_105772302	3300005559	Soil	MCGMIATSNIENGVIAQMRITPSENPSPKVVCVVDDDPTMLRAMDRLLFSDGFAVR
Ga0066700_110716041	3300005559	Soil	MYGMLATSHIENGPDAQLRLTLAENPFPEIVCLVDDDPLVLRSTGLLLTSDGF
Ga0066693_103762751	3300005566	Soil	MIATSYLENVAAVQMRMMPAEEPSSEIVCLVDDDPLVLRSTGVLLVSGGFTV
Ga0066693_103856222	3300005566	Soil	MCDMIAASHIEMGAVAQKRTTPSEKPSSEIVCLVDDDPTVLR
Ga0066703_103648291	3300005568	Soil	MIATSYIENEASAQMLMTPTEKPSAEIVCLVDDDPLVL
Ga0066703_106276301	3300005568	Soil	MIATSHIENGAVAQMRMTPSEKPSSEVVCLVDDDPMVL
Ga0066703_106942742	3300005568	Soil	MYRVFAMSDIENKPVAQMRITPREKPSSEIVCLVDDDPTVLRST
Ga0066708_107451421	3300005576	Soil	MCDMIATSYIENDAAVQMRMMPAEEPSSEIVCLVDDDPLVLRSTGLLL
Ga0066654_100809001	3300005587	Soil	MCGMIATSSIENSVAAQMRVTPTEEPSSEIVCLVDDDPLVLRSTG
Ga0066659_119088662	3300006797	Soil	MYRMPATSHIENGPDAQMHMTLTEKPSSEIVCLVD
Ga0066710_1028315091	3300009012	Grasslands Soil	MWGMIATSHIEKRPVAQMRKTPSEQPSPEIVCLVDDDPMMLRATGRLL
Ga0066709_1008961321	3300009137	Grasslands Soil	MWGMIAMPDIENRADAQMRMTPTEKPSSEIVCLVDDDPLVLRSTGLLL
Ga0066709_1025382792	3300009137	Grasslands Soil	MIALSHIENGAITQMRVTPTENRSSEIVCLVDDDP
Ga0134070_100746671	3300010301	Grasslands Soil	MCGMIATSSIENSVAAQMRETPTEEPSSEIVCLVDDDPLVL
Ga0134064_100290681	3300010325	Grasslands Soil	MCGMIATSSIENSVAAQMRETPTEEPYSEIVCLVDDDPLVLRSTG
Ga0134111_101537482	3300010329	Grasslands Soil	MCGMIAMPDIENRADAQMRMTPTEKPSSEIVCLVDDDPLVLRSTGLLL
Ga0134080_100690604	3300010333	Grasslands Soil	MCGMIATSHIENGTVAQMRMTPAQEPSAEVVCVVDDDPMML
Ga0134066_101401592	3300010364	Grasslands Soil	MYRVFAMSDIENKPVAQMRITPPEKPSSEIVCLVD
Ga0134124_102548731	3300010397	Terrestrial Soil	MFDMIAASHIEMGTVAQKPMMPSEKPSSEIVCLVDDDPMVLR
Ga0137364_111215711	3300012198	Vadose Zone Soil	MWGMIATSHIKKRAVAQMRMTPSKQPSSEIVCLVDDDPMMLRATGRL
Ga0137382_104334753	3300012200	Vadose Zone Soil	MWGMIATSHIEKRPVAQMRKTPSEQPSPEIVCLVDDDP
Ga0137363_111898351	3300012202	Vadose Zone Soil	MWGMIATSPIENGAIAQMRMTPAEEPSAEVVCVVDDDPMMLRAMGRLLF
Ga0137362_105845352	3300012205	Vadose Zone Soil	VLAVSNTENGAVAQMGMTPSENPSLEIVCLVDDDPLVLRSTG
Ga0137362_107838522	3300012205	Vadose Zone Soil	MWGMIATSHIENGAIAQMRMTPAEEPSAEVVCVVDDDHMMLRAMGRLLSSDGFAVRPFN
Ga0137380_102845553	3300012206	Vadose Zone Soil	VYGMIATSYLENSVAAQMRVTPTEEPSSEIVCLVDDDPLVLRSTG
Ga0137381_100927464	3300012207	Vadose Zone Soil	MSHVENKPVAQMRMMPTEEPSSEIVCLVDDDPLVLR
Ga0137381_107343502	3300012207	Vadose Zone Soil	MSGMIATSHIENGAIAQMRMTPAEEPSAEVVCVVDDDHMMLRAMGRLLSSDGFAVR
Ga0137378_103845081	3300012210	Vadose Zone Soil	MCDMIATSYIENDAAVQMRMMPAEEPSSEIVCLVDDDPLVLRSTGVLLVSGGFT
Ga0137377_102268931	3300012211	Vadose Zone Soil	MYEVFAMSHVENKPAAQMRIMPTEEPSSEIVCLVDDDP
Ga0137370_100378755	3300012285	Vadose Zone Soil	MCDMIATSYIENDAAVQMRMMPAEEPSSEIVCLVD
Ga0137371_102730553	3300012356	Vadose Zone Soil	MYGMIATSYIENSVAAQMRVTPTEDPSSEIVCLVDDDPLVLRSTGFLLVSSG
Ga0137371_105474262	3300012356	Vadose Zone Soil	MLTKPHTENRAVAQMRMRPSEKSSSEIVCLVDDDPLALRSIGFKHIL
Ga0137384_106325163	3300012357	Vadose Zone Soil	MWDMIATSYPENRASAQMRMTPSEKPSSEIVCLVDDDPMVLRS
Ga0137384_108524661	3300012357	Vadose Zone Soil	MWGMIATTHIEKRAVAQMRMTPSELPSSEIVCLVDDDPMM
Ga0137384_114642051	3300012357	Vadose Zone Soil	MIATSHIENGAVAQMRRTPSEKPSPEIVCLVDDDLSVLRSTGR
Ga0137385_103872461	3300012359	Vadose Zone Soil	MSGMIATSHIENGAIAQMRMTPAEEPSAEVVCVVDDDHM
Ga0137360_106965451	3300012361	Vadose Zone Soil	MYGMLATSHIENGPDAQLRITPAENPSPEIVCLVDDDP
Ga0137360_108942091	3300012361	Vadose Zone Soil	MIALSHIENGAITQMRVTPAEKRSSEIVCLVDEVPLVLRSTGLLLVS
Ga0137360_114675582	3300012361	Vadose Zone Soil	MCGMIATSQIQDGAIAQMRMTPAEEPSAEVVCVVDDDPMMLRAMG
Ga0137361_102604541	3300012362	Vadose Zone Soil	MIATSQIQDGAIAQMRMTPAEEPSAEVVCVVDDDPMM
Ga0137361_116395141	3300012362	Vadose Zone Soil	MSGMIATSHIENGAIAQMRMTPAEEPSAEVVCVVDDDPMMLRAMGRL
Ga0137358_100167587	3300012582	Vadose Zone Soil	MIATSHIENGAIAQMRMTPAEEPSAEVVCVVDDDPMMLR
Ga0137358_102373621	3300012582	Vadose Zone Soil	MSGMIATSHIENGAIAQMRMTPAEEPSAEVVCVVDDDPMMLR
Ga0137398_101766464	3300012683	Vadose Zone Soil	MCGMIATSQIEDGAIAQMRMTPAEEPSAEVVCVVDDDPMMLRAMGRL
Ga0137397_100220071	3300012685	Vadose Zone Soil	MYRVFAMSDIENKPVAQMRITPREKPSSEIVCLVDDDPMVLRSTGFLLA
Ga0137359_109189301	3300012923	Vadose Zone Soil	MCAMIATSHIENRAVAQIRMTPTEKFFSEIVCLVDDDPLV
Ga0137404_110642461	3300012929	Vadose Zone Soil	MYDMIATSHIEMEAVAQRRTTPSENPSSEIVCLVDDD
Ga0137404_114178982	3300012929	Vadose Zone Soil	MCGMIATSYIENSVAAQMRIMPTEEPSSEIVCLVDDDPLV
Ga0137407_101538354	3300012930	Vadose Zone Soil	MWGMIATSHIENGAIAQMRMMPAEEPSAEVVCVVDDDPMMLRAMGRLLFSDGFA
Ga0137407_110741641	3300012930	Vadose Zone Soil	MCPMLTMPHIENRMDAQIRMTPSKKPSAEIVCLVD
Ga0137407_121728992	3300012930	Vadose Zone Soil	MCGMIATSQIQDGAIAQMRMTPAEEPSAEVVCVVDDDPMMLRAM
Ga0134110_103306841	3300012975	Grasslands Soil	MIAMPDIENRADAQMRMTPTEKPSSEIVCLVDDDPL
Ga0134076_105783971	3300012976	Grasslands Soil	MWDMIATSYPENRASAQMRMTPSEKPSSEIVCLVDDD
Ga0134087_103711853	3300012977	Grasslands Soil	MIAMPHIENENRADAQMRMTPTEKPSSEIVCLVDDDPLVLR*
Ga0134081_101231843	3300014150	Grasslands Soil	MYRVFAMSDIENKPVAQMRITPREKPSSEIVCLVDDDPTVLRSTGFL
Ga0134075_104544462	3300014154	Grasslands Soil	MWDMIATSYPENRASAQMRMTPSEKPSSEIVCLVDDDPTVLRST
Ga0134079_102278432	3300014166	Grasslands Soil	MWGMIATSHIENGAIAQMRMTPAEEPSAEVVCVVDDDPMMLRAMGRLLF*
Ga0132255_1047615402	3300015374	Arabidopsis Rhizosphere	MCDMSHTEIGAVAQRPTTPSEDPSSEIVCLVDDDPMVL
Ga0066667_100920631	3300018433	Grasslands Soil	MLTLSHIENGELAQMRVTPTENRSPEIVCLVDDDPLVLR
Ga0193751_11047031	3300019888	Soil	MIATSHTSQIENGAVTQMRMTPSEKPSPEIVCLVD
Ga0193735_10418951	3300020006	Soil	MWGMIATSHIENGAIAQMRITPSEKSSPEVVCVVDDDPMMLRAM
Ga0193733_10877772	3300020022	Soil	MIATSHIENEAFAQMRMTPNEKSSSEIVCLVDDDPLVLRST
Ga0193724_11209441	3300020062	Soil	MCDMIATSHIEMGAVAQKRTTPGEKPSSEIVCLVDDDPMVL
Ga0207699_111998501	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MYRVFAMSDIENKPVAQMRIPPRENPSSEIVCLVDDDPMVLRSTGLLLA
Ga0207662_110215013	3300025918	Switchgrass Rhizosphere	MCDMSHTEIGAVAQRPTTPSEDPSSEIVCLVDDDPLVLRS
Ga0207644_108699451	3300025931	Switchgrass Rhizosphere	MIATSNIENRAVAQVRMTPSEKPSQEIVCLVDDDPLVLRSTGLLLVS
Ga0209688_10092874	3300026305	Soil	MIATSHIEMGAVAQKRTTPSEKPSSEIVCLVDDDPTVLR
Ga0209469_10345751	3300026307	Soil	MWDMIATSYPENRASAQMRMTPSEKPSSEIVCLVDDDPMVL
Ga0209155_10875523	3300026316	Soil	MWGMIATSQIEKRAVAQMRMTPSKQPSSEIVCLVD
Ga0209471_10295411	3300026318	Soil	MIAASHIEMGAVAQKRTTPSEKPSSEIVCLVDDDPMVLR
Ga0209470_10795044	3300026324	Soil	MIATSHIENGAIAQMRMTPAEKPSAEVVCVVDDDPMMLRAMGRLLFSDGFAM
Ga0209801_12820772	3300026326	Soil	MCGMIATSSIENSVAAQMRETPTEEPSSEIVCLVDDDPLVLRSTGLLLAS
Ga0209266_12919371	3300026327	Soil	MWGMIATSHIENGAIAQMRMTPAEEPSAEVVCVVDDDPMMLRAMGRL
Ga0209473_10847021	3300026330	Soil	MIALSQIENGAITQMRVTPTENRSSEIVCLVDDDPLVLRSTGLLLV
Ga0209473_12144032	3300026330	Soil	MCGMIATSYIENGVAAQMRETPTEEPSSEIVCLVDDDPLVLRSTG
Ga0209803_11259851	3300026332	Soil	MYGMLAMSNIENGPDAQLRITPTEKPSPEIVCLVDDDPLV
Ga0209057_10419251	3300026342	Soil	MPDIENRADAQMRMTPTEKPSSEIVCLVDDDPLVLRSTG
Ga0209159_10616673	3300026343	Soil	MWGMIATSHIENGAIAQMRMTPAEELSAEVVCVVDDDPMML
Ga0257163_10888272	3300026359	Soil	MIATSHIENEAFAQMRMTPTEKSSSEIVCLVDDDPLVLRSTGLL
Ga0257156_10262254	3300026498	Soil	MIATSHRENGAIAQMRITPSENPSPKVVCVVDDDPTM
Ga0209059_10202081	3300026527	Soil	MIALSHIENGAITQMRVTPTENRSSEIVCLVDDDPLVLRSTGLLL
Ga0209378_11712461	3300026528	Soil	MWGMIATSQIEKRAVAQMRMTPSEQPSSEIVCLVDDDP
Ga0209376_13702181	3300026540	Soil	MIATSHIENGAIAQMRMTLAEEPSAEVVCVVDDDPMMLRAMGRLLFSDGFAVRPF
Ga0209161_100860093	3300026548	Soil	MYRVFAMSDIENKPVAQMRIPPGENPSSEIVCLVDDDPMVLRSTGL
Ga0209474_106986531	3300026550	Soil	MYRVFAMSDIENKPVAQMRITPREKPSSEIVCLVDDDPTVLRS
Ga0307282_101058781	3300028784	Soil	MIATSHIEMGAVAQKRTTPSEKPSSEIVCLVDDDPMV
Ga0170834_1078256701	3300031057	Forest Soil	MIATSHTFQIENGAVTQKRMTPTEEPSSEIVCLVD
Ga0170822_106743562	3300031122	Forest Soil	MIATSHTFQIENGAVTQKRMTPTEEPSSEIVCLVDDDPLVLRSTG
Ga0170824_1259016981	3300031231	Forest Soil	MCGMIATSHTFQIENGAVTQKRMTPTEEPSSEIVCLVD
Ga0170818_1034314882	3300031474	Forest Soil	MCGMIATSHTFQIENGAVTQKRMTPTEEPSSEIVCLVDDDPLVLRSTG
Ga0307479_113447802	3300031962	Hardwood Forest Soil	MLATSLIQNGADAQIRMALTEKPSSEIVCVVDDDAL
Ga0306924_124812482	3300032076	Soil	MWGMIATPQSESRAVAQMRMIPSEQPSSEIVCLVDDD
Ga0307471_1003155611	3300032180	Hardwood Forest Soil	MIAMPDIENRADAQMRMTPTEKTSSEIVCLVDDDPLVLR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F093551

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences