NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F093524

Metagenome / Metatranscriptome Family F093524

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F093524
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 59 residues
Representative Sequence MIPYKIKTSPKSNYTWIDYVDNGVETRSMTHKPIYTCEESKAMQDYENGIALFLDSLLQR
Number of Associated Samples 80
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 1.89 %
% of genes near scaffold ends (potentially truncated) 20.75 %
% of genes from short scaffolds (< 2000 bps) 90.57 %
Associated GOLD sequencing projects 67
AlphaFold2 3D model prediction Yes
3D model pTM-score0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (86.792 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(25.472 % of family members)
Environment Ontology (ENVO) Unclassified
(74.528 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(80.189 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 21.59%    β-sheet: 22.73%    Coil/Unstructured: 55.68%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.32
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF00166Cpn10 1.89
PF03819MazG 0.94
PF00118Cpn60_TCP1 0.94
PF08299Bac_DnaA_C 0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 106 Family Scaffolds
COG0234Co-chaperonin GroES (HSP10)Posttranslational modification, protein turnover, chaperones [O] 1.89
COG0459Chaperonin GroEL (HSP60 family)Posttranslational modification, protein turnover, chaperones [O] 0.94
COG0593Chromosomal replication initiation ATPase DnaAReplication, recombination and repair [L] 0.94


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A86.79 %
All OrganismsrootAll Organisms13.21 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000115|DelMOSum2011_c10028087Not Available2536Open in IMG/M
3300000115|DelMOSum2011_c10191684All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64575Open in IMG/M
3300000792|BS_KBA_SWE02_21mDRAFT_10078250Not Available871Open in IMG/M
3300000929|NpDRAFT_10022772All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium2754Open in IMG/M
3300001353|JGI20159J14440_10104844Not Available888Open in IMG/M
3300001353|JGI20159J14440_10129661Not Available754Open in IMG/M
3300001938|GOS2221_1014255Not Available1577Open in IMG/M
3300001938|GOS2221_1021998Not Available1568Open in IMG/M
3300002132|M2t6BS2_1146301Not Available71928Open in IMG/M
3300003216|JGI26079J46598_1077393Not Available626Open in IMG/M
3300003346|JGI26081J50195_1003361Not Available5229Open in IMG/M
3300003346|JGI26081J50195_1060613Not Available746Open in IMG/M
3300003427|JGI26084J50262_1029944Not Available1526Open in IMG/M
3300003427|JGI26084J50262_1046496Not Available1059Open in IMG/M
3300003427|JGI26084J50262_1113600Not Available542Open in IMG/M
3300003621|JGI26083J51738_10070358Not Available786Open in IMG/M
3300003621|JGI26083J51738_10115702Not Available564Open in IMG/M
3300004448|Ga0065861_1079039Not Available838Open in IMG/M
3300005826|Ga0074477_1423667Not Available2298Open in IMG/M
3300005826|Ga0074477_1725544All Organisms → Viruses → Predicted Viral1246Open in IMG/M
3300005828|Ga0074475_10589375Not Available731Open in IMG/M
3300005828|Ga0074475_10986826All Organisms → Viruses → Predicted Viral3648Open in IMG/M
3300005912|Ga0075109_1123551Not Available865Open in IMG/M
3300006029|Ga0075466_1042701Not Available1365Open in IMG/M
3300006029|Ga0075466_1144111Not Available617Open in IMG/M
3300006802|Ga0070749_10660617Not Available560Open in IMG/M
3300006803|Ga0075467_10509409Not Available619Open in IMG/M
3300006916|Ga0070750_10089717Not Available1434Open in IMG/M
3300006916|Ga0070750_10179759Not Available946Open in IMG/M
3300006919|Ga0070746_10327298Not Available699Open in IMG/M
3300006919|Ga0070746_10473058Not Available554Open in IMG/M
3300006920|Ga0070748_1080668Not Available1257Open in IMG/M
3300007276|Ga0070747_1120059All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64959Open in IMG/M
3300007276|Ga0070747_1172385Not Available771Open in IMG/M
3300007538|Ga0099851_1236157Not Available657Open in IMG/M
3300007538|Ga0099851_1238267Not Available653Open in IMG/M
3300007540|Ga0099847_1118968Not Available796Open in IMG/M
3300007540|Ga0099847_1155652Not Available678Open in IMG/M
3300007540|Ga0099847_1250669Not Available508Open in IMG/M
3300007542|Ga0099846_1342791Not Available507Open in IMG/M
3300009001|Ga0102963_1153890Not Available926Open in IMG/M
3300009071|Ga0115566_10369243Not Available833Open in IMG/M
3300009076|Ga0115550_1188568Not Available700Open in IMG/M
3300009149|Ga0114918_10430759Not Available715Open in IMG/M
3300009495|Ga0115571_1086884Not Available1375Open in IMG/M
3300009495|Ga0115571_1173578Not Available893Open in IMG/M
3300009496|Ga0115570_10325355Not Available662Open in IMG/M
3300009497|Ga0115569_10078792Not Available1717Open in IMG/M
3300009498|Ga0115568_10029345Not Available3058Open in IMG/M
3300009508|Ga0115567_10505047Not Available735Open in IMG/M
3300010316|Ga0136655_1223398All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64560Open in IMG/M
3300013010|Ga0129327_10800677Not Available535Open in IMG/M
3300017697|Ga0180120_10289646Not Available657Open in IMG/M
3300017824|Ga0181552_10200504All Organisms → Viruses → Predicted Viral1031Open in IMG/M
3300018036|Ga0181600_10551613Not Available542Open in IMG/M
3300018048|Ga0181606_10513656Not Available625Open in IMG/M
3300018410|Ga0181561_10384946Not Available639Open in IMG/M
3300018413|Ga0181560_10290831Not Available767Open in IMG/M
3300018416|Ga0181553_10753196Not Available506Open in IMG/M
3300018420|Ga0181563_10327960Not Available888Open in IMG/M
3300020166|Ga0206128_1069156Not Available1631Open in IMG/M
3300020182|Ga0206129_10006708All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Cbastvirus → Cellulophaga virus ST11587Open in IMG/M
3300020601|Ga0181557_1078991Not Available1640Open in IMG/M
3300021336|Ga0210307_1165932Not Available752Open in IMG/M
3300021960|Ga0222715_10230368All Organisms → Viruses → Predicted Viral1090Open in IMG/M
3300022063|Ga0212029_1027280Not Available790Open in IMG/M
3300022063|Ga0212029_1036129Not Available701Open in IMG/M
3300022072|Ga0196889_1031049Not Available1082Open in IMG/M
3300022178|Ga0196887_1021538All Organisms → Viruses → Predicted Viral1904Open in IMG/M
3300022178|Ga0196887_1050559All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED641061Open in IMG/M
3300022200|Ga0196901_1016399Not Available3043Open in IMG/M
3300022200|Ga0196901_1050796Not Available1548Open in IMG/M
3300022200|Ga0196901_1152176All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64769Open in IMG/M
3300022926|Ga0255753_1273562Not Available668Open in IMG/M
(restricted) 3300023210|Ga0233412_10526851Not Available535Open in IMG/M
(restricted) 3300023276|Ga0233410_10072681Not Available1046Open in IMG/M
(restricted) 3300024059|Ga0255040_10313404Not Available657Open in IMG/M
(restricted) 3300024062|Ga0255039_10272356Not Available719Open in IMG/M
3300024262|Ga0210003_1260825Not Available680Open in IMG/M
(restricted) 3300024338|Ga0255043_10311736Not Available546Open in IMG/M
(restricted) 3300024519|Ga0255046_10275104Not Available782Open in IMG/M
(restricted) 3300024519|Ga0255046_10334769Not Available711Open in IMG/M
3300025425|Ga0208646_1020772Not Available1580Open in IMG/M
3300025617|Ga0209138_1100162Not Available851Open in IMG/M
3300025626|Ga0209716_1108332Not Available778Open in IMG/M
3300025626|Ga0209716_1178565Not Available527Open in IMG/M
3300025636|Ga0209136_1139094Not Available651Open in IMG/M
3300025647|Ga0208160_1103712Not Available735Open in IMG/M
3300025647|Ga0208160_1156310Not Available547Open in IMG/M
3300025666|Ga0209601_1110277Not Available806Open in IMG/M
3300025684|Ga0209652_1047215All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1596Open in IMG/M
3300025694|Ga0209406_1051174Not Available1553Open in IMG/M
3300025695|Ga0209653_1000291Not Available44846Open in IMG/M
3300025695|Ga0209653_1054601Not Available1495Open in IMG/M
3300025695|Ga0209653_1061461All Organisms → Viruses → Predicted Viral1364Open in IMG/M
3300025704|Ga0209602_1128801Not Available844Open in IMG/M
3300025881|Ga0209309_10357333Not Available641Open in IMG/M
3300025886|Ga0209632_10231065Not Available958Open in IMG/M
3300026097|Ga0209953_1020746Not Available1150Open in IMG/M
(restricted) 3300027856|Ga0255054_10194024Not Available997Open in IMG/M
(restricted) 3300027996|Ga0233413_10235203Not Available777Open in IMG/M
3300031539|Ga0307380_11356488Not Available539Open in IMG/M
3300031566|Ga0307378_10796021Not Available797Open in IMG/M
3300031578|Ga0307376_10398735Not Available904Open in IMG/M
3300031658|Ga0307984_1113247Not Available779Open in IMG/M
3300031673|Ga0307377_10613272Not Available776Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous25.47%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine15.09%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine13.21%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh8.49%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater4.72%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater3.77%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)3.77%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil3.77%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient2.83%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine2.83%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface1.89%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater1.89%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine1.89%
Saline LakeEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake1.89%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water1.89%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.94%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.94%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine0.94%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.94%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.94%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine0.94%
MarineEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine0.94%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000792Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 02_21mEnvironmentalOpen in IMG/M
3300000929Marine plume microbial communities from the Columbia River - 15 PSUEnvironmentalOpen in IMG/M
3300001353Pelagic Microbial community sample from North Sea - COGITO 998_met_09EnvironmentalOpen in IMG/M
3300001938Marine microbial communities from Bedford Basin, Nova Scotia, Canada - GS005EnvironmentalOpen in IMG/M
3300002132Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t6BS2 (105f)EnvironmentalOpen in IMG/M
3300003216Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNAEnvironmentalOpen in IMG/M
3300003346Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNAEnvironmentalOpen in IMG/M
3300003427Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNAEnvironmentalOpen in IMG/M
3300003621Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_85LU_5_DNAEnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300005826Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.186_BBAEnvironmentalOpen in IMG/M
3300005828Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.182_BBIEnvironmentalOpen in IMG/M
3300005912Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKDEnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007542Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaGEnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009076Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511EnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300009496Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524EnvironmentalOpen in IMG/M
3300009497Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503EnvironmentalOpen in IMG/M
3300009498Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426EnvironmentalOpen in IMG/M
3300009508Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412EnvironmentalOpen in IMG/M
3300010316Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNAEnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017824Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018036Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018048Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018410Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011510BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018413Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011509CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018416Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018420Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020166Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1EnvironmentalOpen in IMG/M
3300020182Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2EnvironmentalOpen in IMG/M
3300020601Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011506CT metaG (spades assembly)EnvironmentalOpen in IMG/M
3300021336Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1073 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300022063Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300022200Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022926Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaGEnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300023276 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_1_MGEnvironmentalOpen in IMG/M
3300024059 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2EnvironmentalOpen in IMG/M
3300024062 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1EnvironmentalOpen in IMG/M
3300024262Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024338 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_9EnvironmentalOpen in IMG/M
3300024519 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_27EnvironmentalOpen in IMG/M
3300025425Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8 (SPAdes)EnvironmentalOpen in IMG/M
3300025617Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025626Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)EnvironmentalOpen in IMG/M
3300025636Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025647Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025666Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426 (SPAdes)EnvironmentalOpen in IMG/M
3300025684Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025694Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426 (SPAdes)EnvironmentalOpen in IMG/M
3300025695Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025704Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524 (SPAdes)EnvironmentalOpen in IMG/M
3300025881Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412 (SPAdes)EnvironmentalOpen in IMG/M
3300025886Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)EnvironmentalOpen in IMG/M
3300026097Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300027856 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_23EnvironmentalOpen in IMG/M
3300027996 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MGEnvironmentalOpen in IMG/M
3300031539Soil microbial communities from Risofladan, Vaasa, Finland - UN-3EnvironmentalOpen in IMG/M
3300031566Soil microbial communities from Risofladan, Vaasa, Finland - UN-1EnvironmentalOpen in IMG/M
3300031578Soil microbial communities from Risofladan, Vaasa, Finland - TR-2EnvironmentalOpen in IMG/M
3300031658Marine microbial communities from Ellis Fjord, Antarctic Ocean - #78EnvironmentalOpen in IMG/M
3300031673Soil microbial communities from Risofladan, Vaasa, Finland - TR-3EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2011_1002808783300000115MarineMTPFAIKTSPRSNYTWIDYTENGVDTRSMTHKPIYTCEESAAMQNYENGIALWLESFK*
DelMOSum2011_1019168423300000115MarineMIPYKIKTSPKSNYTWIDYVDNGVETRSMTHKPIYSCKESKAMQDYENGIALFLDSLLQR
BS_KBA_SWE02_21mDRAFT_1007825023300000792MarineMIPFIIKTSPKSNYFFIDYTKDGKSIRSMFHKPIYTCEESKAMQNYHNNIANWLKSFK*
NpDRAFT_1002277223300000929Freshwater And MarineMTPFKIKTSPKSNYTWIDYVERGVPTRSMTHKPIYTCEESKAMQDYENGVSLWLDSLLQR
JGI20159J14440_1010484413300001353Pelagic MarineMIPYKIKTSPKSNYTWIDYVDNGVETRSMTHKPIYTCEESKAMQDYENGIALFLDSLLQR
JGI20159J14440_1012966113300001353Pelagic MarineMTRCKNIPLKFALKYITMIPFKIKTSPKSNYTWIDYVDNGVPTRSMTHKPIYTCEVSKAMQDYENGVSLWLDSLLQR*
GOS2221_101425543300001938MarineMIPYKIKTSPKSNYTWIDYTENGVPTRSMTHKPIYTCEVAKAMQDYENGIALWLESFK*
GOS2221_102199853300001938MarineMIPYKIKTSPKSNYTWIDYTENGTETRAMTHKPIYSCEESKAMQDYENGVSLWLDSLLQR
M2t6BS2_114630173300002132MarineMIPYKIKTSPKSNYTWIDYVDNGVPTRSMTHKPIYTCKESKAMQDYENGIALFLDSLLQR
JGI26079J46598_107739323300003216MarineMIPFKIKTSPKSNYTWIDYVERGVETRSMTHKPMYTCEESKAMQDYENGVSLWLDSLLQR
JGI26081J50195_1003361123300003346MarineMTPFKIQTSPKSNYTWIDYVERGVPTRSMTHKPMYTCEESKAMQDYENGVSLWLDSLLQR
JGI26081J50195_106061313300003346MarineMXPFKIKTSPKSNYTWXDYVXRGVETRSMTHKPMYTCEESKAMQDYENGVSLWLDSLLQR
JGI26084J50262_102994433300003427MarineMIPFKIKTSPKSNYTWIDYVDNGVETRSMTHKPIYTCEESKAMQDYENGVSLWLDSLLSR
JGI26084J50262_104649633300003427MarineMIPFKIKTSPKSNYTWIDYVDNGVPTRSMTHKPIYTCEVSKAMQDYENGVSLWLDSLLQR
JGI26084J50262_111360023300003427MarineMIPYKIHTSPKSNYTWIDYTKNGVETRAMTHKPIYTCEESKAMQDYENGIALFLDSL
JGI26083J51738_1007035813300003621MarineMIPYKIKTSPKSNYTWIDITKNGVETRSMQHKPIYTCEESKAMQDYENGIALFLDGLLSR
JGI26083J51738_1011570213300003621MarineMTRCKNIPLKFALKYITMIPFKIKTSPKSNYTWIDYVDRGVETRSMTHKPIYTCEVSKAMQDYENGVSLWL
Ga0065861_107903923300004448MarineMTPFAIKTSPRSNYTWIDYTDNGVETRSMTHKPIYTCEESKAMQDYENGIALFLDSLLTK
Ga0074477_142366773300005826Sediment (Intertidal)MIPFKIQTSPKSNYTWIDYVERGVPTRSMTHKPIYTCEESKAMQDYENGVSLWLDSLLQR
Ga0074477_172554453300005826Sediment (Intertidal)MTPFKIKTSPKSNYTWIDYVESGVPTRSMTHKPMYSCEESKAMQDYENGIALFLDGLLKR
Ga0074475_1058937533300005828Sediment (Intertidal)MTPFKIKTSPKSNYTWIDYVERGVPTRSMTHKPMYSCEESKAMQDYENGIALFLDGLLKR
Ga0074475_10986826173300005828Sediment (Intertidal)FKIKTSPKSNYTWIDYVERGVPTRSMTHKPIYTCEVAKAMQDYENGVSLWLDSLLQR*
Ga0075109_112355133300005912Saline LakeMIPFAIKTSPKSNYTWIDYLDHGTPTRSMTHKPIYKCEESPAMQDYYNGIDTWLKSFK*
Ga0075466_104270133300006029AqueousMTPFAIKTSPRSNYTWIDYTDNGVETRAMTHKPIYSCEESVAMQNYENGISLWLESFK*
Ga0075466_114411133300006029AqueousMIPFKIKTSPKSNYTWIDYVDNGVPTRSMTHKPIYTCEVAKAMQDYENGIALWLESFK*
Ga0070749_1066061733300006802AqueousIPYKIKTSPKSNYTWIDRTINGVETRSMTHKPIYSCEESKAMQDYENGVSLWLDSLLQR*
Ga0075467_1050940923300006803AqueousMIPYKIKTSPKSNYTWIDITKNGVETRSMQHKPIYTCEESKAMQDYENGIALWLESFK*
Ga0070750_1008971733300006916AqueousMIPYKIKTSPKSNYTWIDITKNGVETRSMQHKPIYTCEESKAMQDYENGVSLWLDSLLQR
Ga0070750_1017975923300006916AqueousMIPYKIHTSPKSNYTWIDYTKNGVETRSMTHKPIYSCEESKAMQDYENGIALFLDSLLKR
Ga0070746_1032729833300006919AqueousMIPYKIHTSPKSNYTWIDRTINGVETRSMTHKPIYSCEESKAMQDYKNGIALFLESLLKR
Ga0070746_1047305813300006919AqueousMIPYKIHTSPKSNYTWIDRTINGVETRSMTHKPIYSCEESKAMQDYENGIALFLDSLLQR
Ga0070748_108066813300006920AqueousMIPYKIKTSPKSNYTWIDYTENGTETRSMTHKPIYTCEESKAMQDYENGVSLWLDSLLQR
Ga0070747_112005933300007276AqueousMIPYKIKTSPKSNYTWIDYVDNGVETRSMTHKPIYSCKESKAMQDYENGIALFLDSLLKR
Ga0070747_117238523300007276AqueousMIPYKIKTSPKSNYTWIDYTENGTETRAMTHKPMYTCEESKAMQDYENGVSLWLDSLLQR
Ga0099851_123615733300007538AqueousMIPYKIKTSPKSNYTWIDITKNGVETRSMTHKPIYTCEESKAMQDYENGIALWLESFK*
Ga0099851_123826723300007538AqueousMIPYKIKTSTKSNYTWIDITKNGVETRSMQHKPIYTCEESKAMQDYENGVSLWLDSLLQR
Ga0099847_111896833300007540AqueousMIPYKIYTSPKSNYTWIDYTKNGVETRSMQHKPIYTCEESKAMQDYENGIALWLESFK*
Ga0099847_115565233300007540AqueousMIPYKIHTSPKSNYTWIDYVDNGTETRAMTHKPIYTCKESKAMQDYENGIALFLDGLLSR
Ga0099847_125066913300007540AqueousMIPYKIYTSPKSNYTWIDRTINGVETRSMQHKPIYTCEESKAMQDYENGIALWLESFK*
Ga0099846_134279113300007542AqueousMIPYKIKTSPKSNYTWIDRTINGVETRSMQHKPIYTCEESKAMQDYENGIALFLDGLLSK
Ga0102963_115389043300009001Pond WaterMIPFKIQTSPKSNYTWIDRTINGVETRSMTHKPMYSCEESKAMQDYENGVSLWLDSILQR
Ga0115566_1036924333300009071Pelagic MarineMIPYKIKTSPKSNYIWIDYVDNGVETRSMTHKPIYTCEESKAMQDYENGIALWLESFK*
Ga0115550_118856833300009076Pelagic MarineMIPYKIKTSPKSNYTWIDYVDNGVETRSMTHKPIYTCEESRAMQDYENGIALFLDSLLQR
Ga0114918_1043075933300009149Deep SubsurfaceMIPYKIKTSPKSNYTWIDYVDNGVPTRSMTHKPIYTCEVAKAMQDYENGIALWLESFK*
Ga0115571_108688433300009495Pelagic MarineMIPYKIKTSPKSNYTWIDYTENGTETRSMTHKPIYTCEESKAMQDYENGIALWLESFK*
Ga0115571_117357823300009495Pelagic MarineMIPYKIKTSPKSNYTWIDYVDNGVETRAMTHKPIYTCEESKAMQDYENGIALWLESFK*
Ga0115570_1032535523300009496Pelagic MarineMIPYKIKTSPKSNYTWIDYTENGTETRAMTHKPIYTCEESKAMQDYENGIALWLESFK*
Ga0115569_1007879223300009497Pelagic MarineMIPYKIKTSPKSNYTWIDYVDNGVPTRSMTNKPIYTCEVSKAMQDYENGVSLWLDSLLQR
Ga0115568_1002934533300009498Pelagic MarineMIPYKIKTSPKSNYTWIDYVDNGVETRSMTHKPIYTCEVSKAMQDYENGVSLWLDSLLQR
Ga0115567_1050504713300009508Pelagic MarineKSNYTWIDYVDNGVETRSMTHKPIYTCEESKAMQDYENGIALWLESFK*
Ga0136655_122339833300010316Freshwater To Marine Saline GradientMIPYKIKTSPKSNYTWIDRTINGVETRSMQHKPIYSCEESKAMQDYENGVSLWLD
Ga0129327_1080067733300013010Freshwater To Marine Saline GradientMIPYKIKTSPKSNYTWIDITKNGVETRSMQHKPIYTCEESKAMQDYENGVSLWL
Ga0180120_1028964633300017697Freshwater To Marine Saline GradientMIPYKIHTSPKSNYTWIDYVDNGTETRAMTHKPIYTCKESKAMQDYENGIALFLDSLLQR
Ga0181552_1020050423300017824Salt MarshMIPYKIKTSPKSNYTWIDRTINGVETRSMTHKPIYSCEESKAMQDYENGIALFLDSLLKR
Ga0181600_1055161313300018036Salt MarshMIPYKIKTSPKSNYTWIDITKNGVETRSMQHKPIYTCEESKAMQDYENGIALFLDSLLKR
Ga0181606_1051365633300018048Salt MarshMIPYKIKTSPKSNYTWIDRTINGVETRSMTHKPIYTCEESKAMQDYENGIALFLDSFLKK
Ga0181561_1038494613300018410Salt MarshTSPKSNYTWIDRTINGVETRSMTHKPIYSCEESKAMQDYENGIALFLDSLLQR
Ga0181560_1029083123300018413Salt MarshMIPYKIKTSPKSNYTWIDRTINGVETRSMTHKPIYTCEESKAMQDYENGIALFLDSLLKR
Ga0181553_1075319633300018416Salt MarshMIPYKIKTSPKSNYTWIDRTINGVETRSMTHKPIYTCEESKAMQDYENGIALFLDSLLQR
Ga0181563_1032796023300018420Salt MarshMIPYKIKTSPKSNYTWIDRTINGVETRSMQHKPIYSCEESKAMQDYENGVSLWLDSLLQR
Ga0206128_106915653300020166SeawaterMIPYKIKTSLKSNYTWIDYTENGVETRAMTHKPIYTCKESKAMQDYENGIALFLDSLLQR
Ga0206129_10006708243300020182SeawaterMIPYKIKTSPKSNYTWIDYTENGVETRAMTHKPIYTCKESKAMQDYENGIALFLDSLLQR
Ga0181557_107899113300020601Salt MarshMIPYKIKTSPKSNYTWIDRTINGVETRAMTHKPIYSCEESKAMQDYENGIALFLDSLLK
Ga0210307_116593213300021336EstuarineMTPFKIQTSPKSNYTWIDYVERGVPTRSMTHKPMYTCEESKAMQDYENGVSLWLDSLLAR
Ga0222715_1023036813300021960Estuarine WaterMIPFKIQTSPKSNYTWIDRTINGVETRSMTHKPIYTCEESKAMQDYENGIALFLDSLLQR
Ga0212029_102728023300022063AqueousMIPYKIKTSPKSNYTWIDITKNGVETRSMQHKPIYSCEESKAMQDYENGVSLWLDSLLQR
Ga0212029_103612933300022063AqueousMIPYKIKTSPKSNYTWIDITKNGVETRSMTHKPIYTCEESKAMQDYENGIALWLESFK
Ga0196889_103104933300022072AqueousMIPFKIKTSPKSNYTWIDYVDNGVPTRSMTHKPIYTCEVAKAMQDYENGIALWLESFK
Ga0196887_102153873300022178AqueousMTPFIIKTSPRSNYTWIDYTDNGVETRSMTHKPIYTCEESKAMQDYENGIALFLDSLLTK
Ga0196887_105055933300022178AqueousMIPYKIKTSPKSNYTWIDYVDNGVETRSMTHKPIYSCEESKAMQDYENGIALWLESFK
Ga0196901_101639933300022200AqueousMIPYKIKTSPKSNYTWIDYVDNGVPTRSMTHKPIYTCEVAKAMQDYENGIALWLESFK
Ga0196901_105079633300022200AqueousMIPYKIKTSPKSNYTWIDITKNGVETRSMQHKPIYTCKESKAMQDYENGIALFLDGLLSR
Ga0196901_115217613300022200AqueousMIPYKIKTSPKSNYTWIDRTINGVETRSMQHKPIYTCEESKAMQDYENGIALFLDSLLKR
Ga0255753_127356213300022926Salt MarshMIPYKIKTSPKSNYTWIDRTINGVETRSMTHKPIYSCEESKAMQDYENGIALFLD
(restricted) Ga0233412_1052685113300023210SeawaterMIPFKIKTSPKSNYTWIDYVERGVPTRSMTHKPIYTCEVSKAMQDYENGVSLWLDSLLQR
(restricted) Ga0233410_1007268143300023276SeawaterMIPFKIKTSPKSNYTWIDYVERGVETRSMTHKPIYTCEVSKAMQDYENGVSLWLDSLLQR
(restricted) Ga0255040_1031340413300024059SeawaterMIPFKIKTSPKSNYTWIDYVDNGVETRSMTHKPIYTCEVSKAMQDYENGVSLWLDSLLQR
(restricted) Ga0255039_1027235643300024062SeawaterMIPFKIKTSPKSNYTWIDYVDNGVETRSMTHKPMYTCEESKAMQDYENGVSLWLDSLLQR
Ga0210003_126082513300024262Deep SubsurfaceMIPYKIKTSPKSNYTWIDYVDNGVETRSMTHKPIYTCEESKAMQDYENGVSLW
(restricted) Ga0255043_1031173633300024338SeawaterMIPFKIKTSPKSNYTWIDYVDNGVETRSMTHKPIYTCEVAKAMQDYENGIALWLESFK
(restricted) Ga0255046_1027510423300024519SeawaterYITMTPFIIKTSPRSNYTWIDYTENGVETRSMTHKPIYTCEESKAMQDYENGIVLFLDGLLKR
(restricted) Ga0255046_1033476913300024519SeawaterMIPFKIKTSPKSNYTWIDYVDNGVETRSMTHKPIYTCEVAKAMQDYEN
Ga0208646_102077223300025425Saline LakeMIPFAIKTSPKSNYTWIDYLDHGTPTRSMTHKPIYKCEESPAMQDYYNGIDTWLKSFK
Ga0209138_110016243300025617MarineMIPFKIKTSPKSNYTWIDYVERGVETRSMTHKPIYTCEESKAMQDYENGVSLWLDSLLQR
Ga0209716_110833243300025626Pelagic MarineYKIKTSPKSNYTWIDYVDNGVETRAMTHKPIYTCKESKAMQDYENGIALWLESFK
Ga0209716_117856513300025626Pelagic MarineMIPYKIKTSPKSNYTWIDYVDNGVETRAMTHKPIYTCKESKAMQDYENG
Ga0209136_113909413300025636MarineMIPFKIQTSPKSNYTWIDYVEQGVPTRSMTHKPMYTCEESKAMQDYENGIALFLDGLLKR
Ga0208160_110371213300025647AqueousMIPYKIKTSPKSNYTWIDITKNGVETRSMQHKPIYTCEESKAMQDYENGIALFL
Ga0208160_115631023300025647AqueousMIPYKIYTSPKSNYTWIDRTINGVETRAMTHKPIYTCEESKAMQDYENGIALWLESFK
Ga0209601_111027733300025666Pelagic MarineMIPYKIKTSPKSNYTWIDYVDNGVETRSMTHKPIYTCEESKAMQDYENGVSLWLDSLLQR
Ga0209652_104721513300025684MarineMIPFKIQTSPKSNYTWIDYVERGVPTRSMTHKPMYTCEESKAMQDYENGIALFLDGLLKR
Ga0209406_105117413300025694Pelagic MarineMIPYKIHTSPKSNYTWIDYTENGTETRAMTHKPIYTCEESKAMQDYENGIALWLESFK
Ga0209653_1000291383300025695MarineMNIKYITMIPYKIHTSPKSNYTWIDYTKNGVETRAMTHKPIYTCEESKAMQDYENGIALFLDSLLKR
Ga0209653_105460133300025695MarineMIPFKIKTSPKSNYTWIDYVDRGVETRSMTHKPIYTCEVSKAMQDYENGVSLWLDSLLQR
Ga0209653_106146153300025695MarineMTPFKIQTSPKSNYTWIDYVERGVPTRSMTHKPLYTCEESAAMQDYENGVSLWLDSLLQR
Ga0209602_112880113300025704Pelagic MarineMIPYKIKTSPKSNYTWIDYTENGTETRAMTHKPIYTCEESKAMQDYENGIA
Ga0209309_1035733313300025881Pelagic MarineMIPYKIHTSPKSNYTWIDYVDNGVETRSMTHKPIYTCEESKAMQDYENGIALWLESFK
Ga0209632_1023106523300025886Pelagic MarineMIPYKIKTSPKSNYTWIDYVDNGVETRSMTHKPIYTCKESKAMQDYENGIALFLDSLLQR
Ga0209953_102074623300026097Pond WaterMIPYKIKTSPKSNYTWVDHTINGVETRSMTHKPIYTCEESKAMQDYENGIALFLDSLLQR
(restricted) Ga0255054_1019402423300027856SeawaterMTPFAIKTSPKSNYTWIDYTDNGVETRSMTHKPIYSCEESKAMQDYENGIVLFLDGLLKR
(restricted) Ga0233413_1023520323300027996SeawaterMIPFKIKTSPKSNYTWIDYVDNGVETRSMTHKPIYTCEVAKAMQDYENGI
Ga0307380_1135648813300031539SoilITMIPYKIKTSPKSNYTWIDYVDNGVETRSMTHKPIYTCKESKAMQDYENGIALFLDSLLQR
Ga0307378_1079602133300031566SoilMIPYKIKTSPKSNYTWIDYVDNGVETRSMTHKPIYTCEVAKAMQDYENGIALWLESFK
Ga0307376_1039873533300031578SoilMIPYKIKTSPKSNYTWIDYVDNGVETRSMTHKPIYTCKESKAMQDYENGIALFLDSLLSR
Ga0307984_111324713300031658MarineMIPFAIKTSPKSNYTWIDHLDHGTPTRSMTHKPIYKCEESPAMQEYYNNINLWLKSI
Ga0307377_1061327233300031673SoilMIPYKIKTSPKSNYTWIDYVDNGVETRSMTHKPIYTCKESKAMQDYENGVSLWLDSLLQR


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