NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F093495

Metagenome / Metatranscriptome Family F093495

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F093495
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 40 residues
Representative Sequence MNMEALSYVKFGDKDGLGEFLFENGVQHQLFYEILGDQGI
Number of Associated Samples 75
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Viruses
% of genes with valid RBS motifs 62.86 %
% of genes near scaffold ends (potentially truncated) 96.23 %
% of genes from short scaffolds (< 2000 bps) 87.74 %
Associated GOLD sequencing projects 67
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Duplodnaviria (52.830 % of family members)
NCBI Taxonomy ID 2731341
Taxonomy All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake
(35.849 % of family members)
Environment Ontology (ENVO) Unclassified
(85.849 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(85.849 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54
1TBL_comb48_EPIDRAFT_10402836
2JGI24028J26656_10155971
3JGI24028J26656_10165393
4JGI24028J26656_10238133
5JGI24218J26658_10179791
6JGI24890J29729_10286841
7JGI25908J49247_100945763
8Ga0066223_10195984
9Ga0066223_11155064
10Ga0007797_12020041
11Ga0007798_101094331
12Ga0068872_107627801
13Ga0007825_10123791
14Ga0075464_101728881
15Ga0075464_111048212
16Ga0114962_101843831
17Ga0114962_105679703
18Ga0114963_102268954
19Ga0114963_105502153
20Ga0114968_103663534
21Ga0114968_104771913
22Ga0114968_107537481
23Ga0114978_104705873
24Ga0114978_105470993
25Ga0114966_103826044
26Ga0114966_108202522
27Ga0114975_103174082
28Ga0114979_101437491
29Ga0114979_107258481
30Ga0114959_100649771
31Ga0114974_102562791
32Ga0114974_107133483
33Ga0114974_107936373
34Ga0114976_100855261
35Ga0114976_105900292
36Ga0114958_100308231
37Ga0114964_102947071
38Ga0136644_100501891
39Ga0136644_101592591
40Ga0157549_12995604
41Ga0182021_112741103
42Ga0181338_10144255
43Ga0181338_10203194
44Ga0181338_10360221
45Ga0181339_10040386
46Ga0181339_10315261
47Ga0181350_10905391
48Ga0181350_11060853
49Ga0181347_10921282
50Ga0181362_10054591
51Ga0181352_10534264
52Ga0181344_12398823
53Ga0181344_12408533
54Ga0181356_11425041
55Ga0181358_11844383
56Ga0181357_11742633
57Ga0181357_12472753
58Ga0181349_10810631
59Ga0181349_11393673
60Ga0181346_10745891
61Ga0181346_11321403
62Ga0181348_12170533
63Ga0181361_1021381
64Ga0214198_10386443
65Ga0214196_10112231
66Ga0214192_10464111
67Ga0194048_103156183
68Ga0181351_10929494
69Ga0181351_11011701
70Ga0228701_10978921
71Ga0228703_11084281
72Ga0214923_100532535
73Ga0214923_104042113
74Ga0208385_10323601
75Ga0208256_10548173
76Ga0208739_10055091
77Ga0208248_10091567
78Ga0208248_11174882
79Ga0208613_10855383
80Ga0209499_11036295
81Ga0209087_11187924
82Ga0209087_11599345
83Ga0209190_12318751
84Ga0209189_10196581
85Ga0209189_11549353
86Ga0209084_10613673
87Ga0209088_102080493
88Ga0209086_101611421
89Ga0209086_103701173
90Ga0209353_102587562
91Ga0209358_104845123
92Ga0209354_103515593
93Ga0209777_105861931
94Ga0209299_12236401
95Ga0304729_10210031
96Ga0304728_10204411
97Ga0304728_12178811
98Ga0302323_1010517294
99Ga0311364_123041863
100Ga0315909_103607511
101Ga0315902_101623871
102Ga0315268_120753371
103Ga0316222_10624871
104Ga0335027_0429766_3_107
105Ga0335027_0869016_392_514
106Ga0335036_0360404_3_107
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 4.41%    β-sheet: 36.76%    Coil/Unstructured: 58.82%
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Original

Variant

510152025303540MNMEALSYVKFGDKDGLGEFLFENGVQHQLFYEILGDQGISequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains




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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
81.1%18.9%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater
Freshwater
Freshwater Lake
Lentic
Freshwater
Freshwater Lake Sediment
Freshwater
Anoxic Zone Freshwater
Freshwater Lake
Sediment
Freshwater
Freshwater
Aqueous
Marine
Fen
Fen
3.8%8.5%27.4%4.7%5.7%35.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
TBL_comb48_EPIDRAFT_104028363300000439FreshwaterMNNDDLSYVEFGDTEGLGRFLFENGVQHQLFYEILADQGI
JGI24028J26656_101559713300002091LenticMNMNDLSYVRFGDKDGLGQFLFENGVQHRLFSQVLADNNILYP
JGI24028J26656_101653933300002091LenticMEALSYVKFGDKDGLGLFLFENGVQHQLFYEILADKGIAIQKYP
JGI24028J26656_102381333300002091LenticMNMEALSYVRFGDKDGLGLFLFENGVQHQLFYEILADKGIAIQKY
JGI24218J26658_101797913300002092LenticMNFEVLSYVKFGDKDGLGEFLFENGVQHQLFYEQLADAGI
JGI24890J29729_102868413300002307LenticMNMNDLSYVRFGDKDGLGQFLFENGVQHRLFSQVLADNNILYPNTPSLMPAQRT*
JGI25908J49247_1009457633300003277Freshwater LakeMEVLSYVKFGDKDGLGEFLFENGVQHQLFYEILGDNGIAV
Ga0066223_101959843300004461MarineMNMDNLSYVEFGDVDGLGTMLFENGVQHRLFYEQLADKGILIPQYT*
Ga0066223_111550643300004461MarineMNMDDLSYVEFGDVDGLGAMLFENGVQHKLFYEQLADKGILIPQYPLIDA
Ga0007797_120200413300004771FreshwaterLNMDALSYVKFGDKDGLAEMLWENGVQHRLFHQILADQNITYPK
Ga0007798_1010943313300004775FreshwaterMNFETLSYVKFGDKEGLGEFLFENGVQHQTFYNILGDLGI
Ga0068872_1076278013300005528Freshwater LakeMESLSYVKFGDKDGLGEFLFENGVQHQLFYEILGDNGIAVQK
Ga0007825_101237913300006125FreshwaterVNNDDLSYVEFGDTEGLGRFLFENGVQHQLFYEIL
Ga0075464_1017288813300006805AqueousMNMDDLSTLEFGDVDGLGRFLFENGVQHKLFYETLA
Ga0075464_1110482123300006805AqueousMNFEVLSYVKFGDKDGLGEFLFENGVQHQLFYEILADRG
Ga0114962_1018438313300009151Freshwater LakeMNMDDLSYVEFGDVDGLGKMLFENGVQHKLFYEQLAD
Ga0114962_1056797033300009151Freshwater LakeMNMNDLSYVRFGDKDGLGQFLFENGVQHRLFSQVLADQNILY
Ga0114963_1022689543300009154Freshwater LakeLNNDNLSYVEFGDTEGLGRFLFENGVQHQLFYEILADKGI
Ga0114963_1055021533300009154Freshwater LakeMNMDALSYVKFGDKDGLAEMLFENGVQHRLFHQIVTDT
Ga0114968_1036635343300009155Freshwater LakeLNNDNLSYVEFGDTEGLGRFLFENGVQHQLFYEILADKGILVQK
Ga0114968_1047719133300009155Freshwater LakeMNMEALSYVKFGDKDGLGEFLFENGVQHQTFYNILGDQGIAVQKY
Ga0114968_1075374813300009155Freshwater LakeMNFDDLSTVEFGDVDGLGRMLFENGLQHQLFYDILGDR
Ga0114978_1047058733300009159Freshwater LakeMNMEALSYVKFGDKDGLGEFLFENGVQHQTFYNILGDQGIAIQKY
Ga0114978_1054709933300009159Freshwater LakeMNMDDLSYVEFGDVDGLGVMLFENGVQHKLFYEQLADKGILIPQYPLIDA
Ga0114966_1038260443300009161Freshwater LakeMEALSYVKFGDKDGLGEFLFENGVQHQLFYNILGDQGIVVQKYPL
Ga0114966_1082025223300009161Freshwater LakeMDALSYVKFGDKDGLAEMLFENGVQHRLFHQIITDT
Ga0114975_1031740823300009164Freshwater LakeMNMENLSYVQFGDRDGLGEMLFENGVQHQLFYEILADQGILVPKYP
Ga0114979_1014374913300009180Freshwater LakeMEALSYVKFGDKDGLGEFLFENGVQHQLFYEILADQGILIP
Ga0114979_1072584813300009180Freshwater LakeMNMESLSYVKFGDKDGLGEFLFENGVQHQLFYEILA
Ga0114959_1006497713300009182Freshwater LakeMNMNDLSYVRFGDKDGLGQFLFENGVQHRLFSQIL
Ga0114974_1025627913300009183Freshwater LakeMNMNDLSYVRFGDKDGLGQFLFENGVQHRLFHQIL
Ga0114974_1071334833300009183Freshwater LakeMNMDDLSYVEFGDVDGLGTMLFENGVQHKLFYEQLADRG
Ga0114974_1079363733300009183Freshwater LakeMNMEALSYVKFGDKDGLGEFLFENGVQHQTFYNILGDQ
Ga0114976_1008552613300009184Freshwater LakeMNMNDLSYVRFGDKDGLGQFLFENGVQHRLFSQILADNN
Ga0114976_1059002923300009184Freshwater LakeMNMENLSYVQFGDRDGLGEMLFENGVQHQLFYEILADQG
Ga0114958_1003082313300009684Freshwater LakeMNMDDLSYVEFGDVDGLGTMLFENGVQHRLFYEQLADKGI
Ga0114964_1029470713300010157Freshwater LakeLNNDNLSYVEFGDTEGLGRFLFENGVQHQLFYEILADKG
Ga0136644_1005018913300010334Freshwater LakeMDALSYVKFGDKDGLGEMLFENGVQHRLFHQILADVGIS
Ga0136644_1015925913300010334Freshwater LakeMNMDALSYVKFGDKDGLGEMLFENGVQHRLFHQILADVGIS
Ga0157549_129956043300012732FreshwaterMDNLSYVEFGDRDGLGVMLFENGVQHKLFYEQLADKGILIPQYPIIDADPEN
Ga0182021_1127411033300014502FenMNMNDLSYVRFGDKDGLGQFLFENGVQHRLFSQILADNNILYP
Ga0181338_101442553300015050Freshwater LakeMNMDDLSYVEFGDVDGLGAMLFENGVQHKLFYEQLAD
Ga0181338_102031943300015050Freshwater LakeMEVLSYVKFGDKDGLGEFLFENGVQHQLFYEILGDNGIAVQK
Ga0181338_103602213300015050Freshwater LakeMNMDVLSYVKFGDKDGLGEFLFENGMQHQLFYDILGDNG
Ga0181339_100403863300017700Freshwater LakeMNMEALSYVKFGDKDGLGEFLFENGMQHQLFYDILGD
Ga0181339_103152613300017700Freshwater LakeMNMNDLSYVKFGDKDGLGQFLFENGVQHRLFHEILADNNI
Ga0181350_109053913300017716Freshwater LakeMNMDVLSYVKFGDKDGLGEFLFENGMQHQLFYDILGDNGIAVQKY
Ga0181350_110608533300017716Freshwater LakeMDDLSYVEFGDVDGLGAMLFENGVQHKLFYEQLADRGILIPQYP
Ga0181347_109212823300017722Freshwater LakeMETLSYVKFGDKDGLGEFLFENGVQHQLFYEILGDNGIAVS
Ga0181362_100545913300017723Freshwater LakeMNMEALSYVKFGDKDGLGEFLFENGMQHQLFYDILGDIGI
Ga0181352_105342643300017747Freshwater LakeMNMEALSYVKFGDKDGLGEFLFENGVQHQLFYEILGDN
Ga0181344_123988233300017754Freshwater LakeMNDLSYVKFGDKDGLGQFLFENGVQHRLFHEILADNNILYPKYP
Ga0181344_124085333300017754Freshwater LakeMNMDDLSYVEFGDRDGLGTMLFENGVQHKLFYEQLADRGILIPQYPL
Ga0181356_114250413300017761Freshwater LakeVNMETLSYVKYGDKDGLGEFLFENGVQHQLFYEILADQGI
Ga0181358_118443833300017774Freshwater LakeMNMDVLSYVKFGDKDGLGEFLFENGMQHQLFYDILGDNGIAVQ
Ga0181357_117426333300017777Freshwater LakeMNMDDLSYVEFGDVDGLGAMLFENGVQHKLFYEQLADRGILIPQY
Ga0181357_124727533300017777Freshwater LakeMNMDILSYVKFGDKDGLGEFLFENGMQHQLFYDILGDNGIAVQKY
Ga0181349_108106313300017778Freshwater LakeMNMDVLSYVKFGDKDGLGEFLFENGMQHQLFYDILGDN
Ga0181349_113936733300017778Freshwater LakeMEALLYVKFGDKDGLGEFLFENGMQHQLFYDILGDNGIAVQKYPL
Ga0181346_107458913300017780Freshwater LakeMNMEALSYVKFGDKDGLGEFLFENGMQHQLFYDIL
Ga0181346_113214033300017780Freshwater LakeMEVLSYVKFGDKDGLGEFLFENGVQHQLFYEILGDNG
Ga0181348_121705333300017784Freshwater LakeMDDLSYVEFGDVDGLGAMLFENGVQHKLFYEQLAD
Ga0181361_10213813300019783Freshwater LakeMDMDNLSYVEFGDVDGLGVMLFENGVQHKLFYEQLADKGIL
Ga0214198_103864433300020710FreshwaterMNNDDLSYVEFGDTEGLGRFLFENGVQHQLFYEILADQGILVQK
Ga0214196_101122313300021132FreshwaterMEILSIVKFGDPESLGEFLFENGTQHLLFWENLADQ
Ga0214192_104641113300021142FreshwaterMNNDDLSYVEFGDTEGLGRFLFENGVQHQLFYEIL
Ga0194048_1031561833300021519Anoxic Zone FreshwaterMNMDDLSYVEFGDVDGLGAMLFENGVQHKLFYEQLADRG
Ga0181351_109294943300022407Freshwater LakeMEALSYVKFGDKDGLGEFLFENGVQHQLFYEILADN
Ga0181351_110117013300022407Freshwater LakeMNMEALSYVKFGDKDGLGEFLFENGMQHQLFYDILGDNGIAVQKY
Ga0228701_109789213300022746FreshwaterMNMEALSYVQFGDKDGLGEMLFENGVQHQLFYEILADQGILIPKYPLTDA
Ga0228703_110842813300022747FreshwaterMNMEALSYVKFGDRDGLGEMLFENGVQHQLFYEILADQGIL
Ga0214923_1005325353300023179FreshwaterMESLSSVEFGDKDGLRVMLFENQMQHQLFFDTLADRNI
Ga0214923_1040421133300023179FreshwaterVNFEVLSYVKFGDRDGLGEFLFENGVQHQLFYEILADSGILIPK
Ga0208385_103236013300025363FreshwaterMNNDDLSYVEFGDTEGLGRFLFENGIQHQLFYEILADQGIL
Ga0208256_105481733300025382FreshwaterMEALSYVKFGDRDGLGEFLFENGVQHRLFHQILADKG
Ga0208739_100550913300025426FreshwaterMNNDDLSYVEFGDTEGLGRFLFENGVQHQLFYEILA
Ga0208248_100915673300025595FreshwaterMNMNDLSYVRFGDKDGLGQFLFENGVQHRLFSQVLADQNILYPK
Ga0208248_111748823300025595FreshwaterMDALSYVKFGDKDGLAEMLFENGVQHRLFHQIITDTGVTYP
Ga0208613_108553833300025616FreshwaterMEALSYVKFGDKDGLGEFLFENGVQHQLFYNILGDQG
Ga0209499_110362953300027712Freshwater LakeMNMEALSYVKFGDKDGLGEFLFENGVQHQLFYEILGDQGI
Ga0209087_111879243300027734Freshwater LakeMNMENLSYVQFGDRDGLGEMLFENGVQHQLFYEILADQ
Ga0209087_115993453300027734Freshwater LakeMNMDDLSYVEFGDVDGLGVMLFENGIQHKLFYEQLADN
Ga0209190_123187513300027736Freshwater LakeMNMDALSYVKFGDKDGLAEMLFENGVQHRLFHQIVTDTGVTYP
Ga0209189_101965813300027747Freshwater LakeMNFETLSYVKFGDKEGLGEFLFENGVQHQTFYNILGDQGIAVQKY
Ga0209189_115493533300027747Freshwater LakeMNMDALSYVKFGDKEGLAEMLWENGVQHRLFHQIVTDT
Ga0209084_106136733300027749Freshwater LakeMNMNDLSYVRFGDKDGLGQFLFENGVQHRLFSQILADN
Ga0209088_1020804933300027763Freshwater LakeMEALSYVKFGDKDGLGEFLFENGVQHQLFYEILADQGI
Ga0209086_1016114213300027770Freshwater LakeMDMDNLSYVEFGDRDGLGRMLFENGVQHRLFYEQLADKGIL
Ga0209086_1037011733300027770Freshwater LakeMNMDALSYVKFGDKEGLAEMLWENGVQHRLFHQII
Ga0209353_1025875623300027798Freshwater LakeMEALSYVKFGDKDGLGEFLFENGVQHQLFYEILADNGIA
Ga0209358_1048451233300027804Freshwater LakeMEALSYVKFGDKDGLGEFLFENGVQHQLFYEILGDNGIAVQKY
Ga0209354_1035155933300027808Freshwater LakeMDNLSYVEFGDVDGLGVMLFENGVQHKLFYEQLADKGILI
Ga0209777_1058619313300027896Freshwater Lake SedimentMNNDDLSYVEFGDTEGLGRFLFENGVQHQLFYEILADQGILVQKY
Ga0209299_122364013300027974Freshwater LakeMNMDDLSYVEFGDVDGLGVMLFENGVQHKLFYEQLADKG
Ga0304729_102100313300028392Freshwater LakeLNNDNLSYVEFGDTEGLGRFLFENGVQHQLFYEILADKGILVQKY
Ga0304728_102044113300028393Freshwater LakeMDALSYVKFGDKDGLAEMLFENGVQHRLFHQIVTDTGVTYP
Ga0304728_121788113300028393Freshwater LakeMNMNDLSYVRFGDKDGLGQFLFENGVQHRLFSQILADNNILY
Ga0302323_10105172943300031232FenMDMDNLSYVEFGDVDGLGRMLFENGVQHRLFYEQLADKGILIPQ
Ga0311364_1230418633300031521FenMDNLSYVEFGDVDGLGRMLFENGVQHRLFYEQLADKGILIPQYP
Ga0315909_1036075113300031857FreshwaterMNFDDLTTVKFGDVDGLGRMLFENGLQHRLFYNILGD
Ga0315902_1016238713300032093FreshwaterMNFEALNAVKFGDRDSLGEFLFENGLEHRVFQQTFMD
Ga0315268_1207533713300032173SedimentMNMEALSYVKFGDKDGLGEFLFENGVQHQLFYEILGD
Ga0316222_106248713300032561FreshwaterMNNDDLSYVEFGDTEGLGRFLFENGVQHQLFYEILADQGILVQ
Ga0335027_0429766_3_1073300034101FreshwaterMEVLSYVRFGDRDGLQEFLFENGVQHQLFYEILAD
Ga0335027_0869016_392_5143300034101FreshwaterMESLSYVKFGDKDGLGEFLFENGVQHQLFYEILGDNGIAVQ
Ga0335036_0360404_3_1073300034106FreshwaterMEALSYVKFGDKDGLGEFLFENGVQHQLFYEILGD


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