Metagenome / Metatranscriptome Family F093470

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093470
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	87 residues
Representative Sequence	VPMQPIHRLAHLAQRPDGGVEWACPQCGRYLIRYPDTQLVVAAGASGPAHILGPEYRDDPPEAPTMSQFDEQFLHRHAMAWSADHRSD
Number of Associated Samples	67
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	82.08 %
% of genes near scaffold ends (potentially truncated)	17.92 %
% of genes from short scaffolds (< 2000 bps)	86.79 %
Associated GOLD sequencing projects	61
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (54.717 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (23.585 % of family members)
Environment Ontology (ENVO)	Unclassified (38.679 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.283 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.24% β-sheet: 21.55% Coil/Unstructured: 61.21%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF07883	Cupin_2	13.21
PF04229	GrpB	5.66
PF01906	YbjQ_1	3.77
PF04264	YceI	2.83
PF13191	AAA_16	1.89
PF00106	adh_short	1.89
PF08241	Methyltransf_11	0.94
PF02843	GARS_C	0.94
PF07730	HisKA_3	0.94
PF12697	Abhydrolase_6	0.94
PF14329	DUF4386	0.94
PF10584	Proteasome_A_N	0.94
PF13489	Methyltransf_23	0.94
PF04542	Sigma70_r2	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG2320	GrpB domain, predicted nucleotidyltransferase, UPF0157 family	General function prediction only [R]	5.66
COG0393	Uncharacterized pentameric protein YbjQ, UPF0145 family	Function unknown [S]	3.77
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	2.83
COG0151	Phosphoribosylamine-glycine ligase	Nucleotide transport and metabolism [F]	0.94
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.94
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.94
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.94
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.94
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.94
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.94
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.94
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.72 %
All Organisms	root	All Organisms	45.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.72 %
cellular organisms	root	All Organisms → cellular organisms	45.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.72 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	45.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.72 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	33.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	18.87 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.72 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	16.98 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	10.38 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	0.94 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.72 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	10.38 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	4.72 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.94 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.94 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	0.94 %
Chloroflexales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.72 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	10.38 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.72 %
Roseiflexineae	suborder	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae	0.94 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	0.94 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.94 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.72 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	10.38 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.72 %
Rhizocola	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rhizocola	0.94 %
Roseiflexaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae	0.94 %
Rubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	0.94 %
Saccharothrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharothrix	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.72 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	10.38 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.72 %
unclassified Saccharothrix	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharothrix → unclassified Saccharothrix	0.94 %
Rhizocola hellebori	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rhizocola → Rhizocola hellebori	0.94 %
Rubrobacter tropicus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter tropicus	0.94 %
Roseiflexus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.72 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	10.38 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.72 %
unclassified Roseiflexus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus	0.94 %
Saccharothrix sp. NRRL B-16348	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharothrix → unclassified Saccharothrix → Saccharothrix sp. NRRL B-16348	0.94 %
Rhizocola hellebori	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rhizocola → Rhizocola hellebori	0.94 %
Rubrobacter tropicus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter tropicus	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.72 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	10.38 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.72 %
Roseiflexus sp. RS-1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	0.94 %
Saccharothrix sp. NRRL B-16348	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharothrix → unclassified Saccharothrix → Saccharothrix sp. NRRL B-16348	0.94 %
Rhizocola hellebori	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rhizocola → Rhizocola hellebori	0.94 %
Rubrobacter tropicus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter tropicus	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig185706	Not Available	575	Open in IMG/M
2228664021\|ICCgaii200_c0737324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	568	Open in IMG/M
3300000443\|F12B_12772163	Not Available	568	Open in IMG/M
3300000550\|F24TB_10771943	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300000858\|JGI10213J12805_10163042	All Organisms → cellular organisms → Bacteria	2118	Open in IMG/M
3300000956\|JGI10216J12902_101625585	All Organisms → cellular organisms → Bacteria	1862	Open in IMG/M
3300000956\|JGI10216J12902_102122112	Not Available	722	Open in IMG/M
3300000956\|JGI10216J12902_102962905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharothrix → unclassified Saccharothrix → Saccharothrix sp. NRRL B-16348	850	Open in IMG/M
3300000956\|JGI10216J12902_104012676	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300000956\|JGI10216J12902_104173490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1506	Open in IMG/M
3300000956\|JGI10216J12902_108636555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1188	Open in IMG/M
3300000956\|JGI10216J12902_110740145	Not Available	524	Open in IMG/M
3300000956\|JGI10216J12902_118052836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	793	Open in IMG/M
3300003203\|JGI25406J46586_10081820	Not Available	989	Open in IMG/M
3300003203\|JGI25406J46586_10163810	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300003373\|JGI25407J50210_10111733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	674	Open in IMG/M
3300004016\|Ga0058689_10048900	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300004463\|Ga0063356_102288722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	824	Open in IMG/M
3300004463\|Ga0063356_102622333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	774	Open in IMG/M
3300004479\|Ga0062595_100906314	Not Available	743	Open in IMG/M
3300005981\|Ga0081538_10138154	Not Available	1130	Open in IMG/M
3300006049\|Ga0075417_10020631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2620	Open in IMG/M
3300006049\|Ga0075417_10443658	Not Available	646	Open in IMG/M
3300006844\|Ga0075428_100031431	All Organisms → cellular organisms → Bacteria	5868	Open in IMG/M
3300006844\|Ga0075428_100148429	All Organisms → cellular organisms → Bacteria	2548	Open in IMG/M
3300006844\|Ga0075428_101538066	Not Available	696	Open in IMG/M
3300006845\|Ga0075421_100173177	All Organisms → cellular organisms → Bacteria	2688	Open in IMG/M
3300006845\|Ga0075421_101664310	Not Available	692	Open in IMG/M
3300006847\|Ga0075431_101496709	Not Available	633	Open in IMG/M
3300006852\|Ga0075433_10191478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1819	Open in IMG/M
3300006853\|Ga0075420_101822328	Not Available	520	Open in IMG/M
3300006871\|Ga0075434_100399532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1395	Open in IMG/M
3300006880\|Ga0075429_100782793	Not Available	835	Open in IMG/M
3300006904\|Ga0075424_102176610	Not Available	584	Open in IMG/M
3300006969\|Ga0075419_10454763	Not Available	884	Open in IMG/M
3300009094\|Ga0111539_10576871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1310	Open in IMG/M
3300009100\|Ga0075418_10026703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6309	Open in IMG/M
3300009100\|Ga0075418_10952993	Not Available	928	Open in IMG/M
3300009147\|Ga0114129_10014970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11050	Open in IMG/M
3300009147\|Ga0114129_10124276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rhizocola → Rhizocola hellebori	3549	Open in IMG/M
3300009147\|Ga0114129_11332318	Not Available	888	Open in IMG/M
3300009156\|Ga0111538_10548445	Not Available	1466	Open in IMG/M
3300009840\|Ga0126313_10046593	All Organisms → cellular organisms → Bacteria	3041	Open in IMG/M
3300010038\|Ga0126315_10003861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6476	Open in IMG/M
3300010040\|Ga0126308_10851279	Not Available	633	Open in IMG/M
3300010041\|Ga0126312_11293321	Not Available	539	Open in IMG/M
3300010042\|Ga0126314_11117843	Not Available	587	Open in IMG/M
3300010044\|Ga0126310_10585031	Not Available	830	Open in IMG/M
3300010045\|Ga0126311_11064105	Not Available	664	Open in IMG/M
3300010145\|Ga0126321_1032862	Not Available	1171	Open in IMG/M
3300012938\|Ga0162651_100064152	Not Available	596	Open in IMG/M
3300014487\|Ga0182000_10106460	Not Available	950	Open in IMG/M
3300014487\|Ga0182000_10172306	Not Available	804	Open in IMG/M
3300018072\|Ga0184635_10062952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter tropicus	1442	Open in IMG/M
3300018072\|Ga0184635_10171455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	866	Open in IMG/M
3300018078\|Ga0184612_10390367	Not Available	700	Open in IMG/M
3300018081\|Ga0184625_10009270	All Organisms → cellular organisms → Bacteria	4500	Open in IMG/M
3300018081\|Ga0184625_10246395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	936	Open in IMG/M
3300018081\|Ga0184625_10454499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	656	Open in IMG/M
3300018466\|Ga0190268_10789636	Not Available	717	Open in IMG/M
3300021510\|Ga0222621_1130115	Not Available	536	Open in IMG/M
3300022694\|Ga0222623_10097570	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1142	Open in IMG/M
3300022694\|Ga0222623_10219908	Not Available	735	Open in IMG/M
3300022756\|Ga0222622_10073991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2014	Open in IMG/M
3300027718\|Ga0209795_10059592	Not Available	1139	Open in IMG/M
3300027873\|Ga0209814_10162792	Not Available	959	Open in IMG/M
3300027907\|Ga0207428_11158820	Not Available	539	Open in IMG/M
3300027909\|Ga0209382_10028284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6762	Open in IMG/M
3300027909\|Ga0209382_11887925	Not Available	578	Open in IMG/M
3300028587\|Ga0247828_10420321	Not Available	775	Open in IMG/M
3300028589\|Ga0247818_11407758	Not Available	503	Open in IMG/M
3300028719\|Ga0307301_10079319	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1029	Open in IMG/M
3300028719\|Ga0307301_10149269	Not Available	752	Open in IMG/M
3300028720\|Ga0307317_10319567	Not Available	525	Open in IMG/M
3300028722\|Ga0307319_10004457	All Organisms → cellular organisms → Bacteria	4273	Open in IMG/M
3300028722\|Ga0307319_10086772	Not Available	997	Open in IMG/M
3300028722\|Ga0307319_10180132	Not Available	689	Open in IMG/M
3300028722\|Ga0307319_10331433	Not Available	505	Open in IMG/M
3300028744\|Ga0307318_10085314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1061	Open in IMG/M
3300028744\|Ga0307318_10115869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	911	Open in IMG/M
3300028744\|Ga0307318_10261899	All Organisms → cellular organisms → Bacteria → Terrabacteria group	603	Open in IMG/M
3300028744\|Ga0307318_10262650	Not Available	602	Open in IMG/M
3300028755\|Ga0307316_10190037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	738	Open in IMG/M
3300028771\|Ga0307320_10053244	Not Available	1496	Open in IMG/M
3300028771\|Ga0307320_10094421	Not Available	1133	Open in IMG/M
3300028771\|Ga0307320_10121177	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300028771\|Ga0307320_10238730	Not Available	715	Open in IMG/M
3300028771\|Ga0307320_10342797	Not Available	596	Open in IMG/M
3300028796\|Ga0307287_10148843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	890	Open in IMG/M
3300028796\|Ga0307287_10227494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	707	Open in IMG/M
3300028814\|Ga0307302_10092839	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1436	Open in IMG/M
3300028814\|Ga0307302_10266614	Not Available	840	Open in IMG/M
3300028814\|Ga0307302_10282321	Not Available	815	Open in IMG/M
3300028814\|Ga0307302_10326851	Not Available	755	Open in IMG/M
3300028881\|Ga0307277_10289884	Not Available	725	Open in IMG/M
3300030336\|Ga0247826_10839009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	722	Open in IMG/M
3300030510\|Ga0268243_1179997	Not Available	521	Open in IMG/M
3300030516\|Ga0268255_10064918	Not Available	1143	Open in IMG/M
3300031731\|Ga0307405_10324316	Not Available	1178	Open in IMG/M
3300031901\|Ga0307406_10354774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1147	Open in IMG/M
3300031901\|Ga0307406_11325687	Not Available	629	Open in IMG/M
3300031995\|Ga0307409_100681719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1025	Open in IMG/M
3300031995\|Ga0307409_101183063	Not Available	787	Open in IMG/M
3300032126\|Ga0307415_100828051	Not Available	847	Open in IMG/M
3300032159\|Ga0268251_10121046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	957	Open in IMG/M
3300033550\|Ga0247829_10934865	Not Available	721	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	61.32%
Host-Associated	Host-Associated	38.68%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.94%
Plants	Host-Associated → Plants	38.68%
Aquatic	Environmental → Aquatic	10.38%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	29.25%
Sediment	Environmental → Aquatic → Sediment	9.43%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.77%
Phylloplane	Host-Associated → Plants → Phylloplane	2.83%
Roots	Host-Associated → Plants → Roots	1.89%
Freshwater	Environmental → Aquatic → Freshwater	0.94%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.94%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	29.25%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.43%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.77%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	2.83%
Loam	Environmental → Terrestrial → Soil → Loam	1.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.89%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.94%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.94%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.02%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	29.25%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.43%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.77%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	2.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.89%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.94%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	23.58%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	23.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.38%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	6.60%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.66%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	5.66%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.83%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	2.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.89%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.89%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.89%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	1.89%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.94%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300030516	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_11448000	2124908045	Soil	TDSQREEVFPMPMQPIHRLANLAQRPDGAIEWACPRCGRYLLRYPDTQLVLAAGAPNIVHVLGEGYPAAPIDVPTMSEFDQQFLHAHAMGW
ICCgaii200_07373242	2228664021	Soil	MQPIHPLADLGRADGGVEWACPQVGRYLXRYPDTQLVVVAGAPGPIHVLGPGYRDDPVDGPTVSEFDQQFLHRHAMAWSAELRPD
F12B_127721632	3300000443	Soil	VSMQSIHRLAHLAQRPDGCVEWACPQYGRYLIRYPDSELVLAAGAPDPVHILSPEYRNEPSDGPTISEFDEQFLRSHAMAWSAYHRPEPKDKQ*
F24TB_107719433	3300000550	Soil	VPMQPVHRLVDLGQQSDGGVEWACPQCGRYLVRYPDTELVLVAGAPGPAHVLGSGYRDDPTEGPTLTQFDEQFLHRHAMAWSADHRPN*
JGI10213J12805_101630423	3300000858	Soil	MPMQPIHRLADLARRPDGGVEWACPQCGRYLVRYPDTQLVLAAGALGPTHVLGPRYWDDTPEDPIVSEFDQQFLHRHVMAW*
JGI10216J12902_1016255852	3300000956	Soil	MPMQPIHRLADLGQRPDGGIEWACPRCGRYLVRYRDRQLVVAAGTPGPAHVLGRRYRDDPSEIPTASEFDDQFLHRHAMAW*
JGI10216J12902_1021221121	3300000956	Soil	LAHLAQRPDGGTEWACPQCGRYLIRYPDTQLVLAAGAPGPAHLLGPGYRDDPPEAPTVSEFDQQFLHRHAMAWSADHRPE*
JGI10216J12902_1029629052	3300000956	Soil	MPMQPIHRLADLAQRPDGGVEWACPQCGRYLVRYPDSQLVVVAGAPGPAHVLGPGYGDDPADVPTVSEFDEQFLHRHAVAW*
JGI10216J12902_1040126762	3300000956	Soil	MPMQPIHRLANLAQRPDGAIEWACPRCGRYLLRYPDTQLVLAAGAPNIVHVLGEGYPAAPIDVPTMSEFDQQFLHAHAMGW*
JGI10216J12902_1041734902	3300000956	Soil	VPMQSIHRLAHLAQRPDGGVEWACPQYGRYLIRYPDSELVLAAGAPDPVHILSPEYRNEPSDGPTISEFDEQFLRSHAMAWSAYHRPEPKDKQ*
JGI10216J12902_1086365552	3300000956	Soil	VPMQPIHRLADLGHRPDGGVEWACPRCGRYLVRYPHTQLVLAPGAPGAAHLLGPEYREDPPAVPSVSEFDQQFLHRHAMAWSADHRAE*
JGI10216J12902_1107401451	3300000956	Soil	GVEWACPQCGRYLIRYPDSDLVLAAGAPGAAHILGPEYQDEPLEGPTMSEFDEQFLRCYAMAWSADHRPERKEKQ*
JGI10216J12902_1180528362	3300000956	Soil	VPMRPIHRLAHLAQRPDGSTEWACPQCGRYLIRYPDTQLVVAAGAPGPAHILGPEYRDDPPQAPTMSQFDEQFLHRHAMAWSADHRSD*
JGI25406J46586_100818202	3300003203	Tabebuia Heterophylla Rhizosphere	VPMQPIHRLADLGQRPDGGVEWACPQCGRYLVRYPAGEVVVAAGAPGPAHIFGPGYQDDPTEAAIVSEFDQQFLHRHAMAWSADHQPEPKETQ*
JGI25406J46586_101638101	3300003203	Tabebuia Heterophylla Rhizosphere	VPMQPIHRLADLGQRPDGGVEWACPQCGRYLVRYPDSQLVVVAAGAPGPTHVVGSGYRDDPTGVPTVSEFDQQFLRTYAMAW*
JGI25407J50210_101117331	3300003373	Tabebuia Heterophylla Rhizosphere	VPMQPIHRLAHLAQRPDGGTEWACPQCGRYLIRYPDTHLVLAIGAPGPAHILGPEYREDPPAVASVSEFDQQFLQRHAMAWSADHRPE*
Ga0058689_100489001	3300004016	Agave	MPMQPIHRLANLAQRPDGAVEWACPRCGRYLVRYPDTQLVLAAGAPDTVHVLGDRYPAAPIDVAAMSEYDQQFLHAHAIGW*
Ga0063356_1022887222	3300004463	Arabidopsis Thaliana Rhizosphere	MPMQPIHRLADLGQRPDGGVEWACPQCGRYLIRYPDTQLVLAAGAPNPAHILGPEYQDDPTEEPTVNELDQQFLHRHAMAWSADHRPRLKGKP*
Ga0063356_1026223331	3300004463	Arabidopsis Thaliana Rhizosphere	VPMQPIHRLAHLAQQSDGGTEWACPQCGRYLVRYPDSELVVAAGAPGPVHVLGSRYRDDPTEVPTVSEFDHQFLPPPRHGLVGRPSA*
Ga0062595_1009063141	3300004479	Soil	VPMQPIHRLAHLAQRPDGGVEWACPQCGRYLVRYPDTQLVLAVGAPGPVHVLGPGYRDDDPTEAVIVSEFDEQFLHRHAMAWSADHQPEPKETQ*
Ga0081538_101381542	3300005981	Tabebuia Heterophylla Rhizosphere	MQPIHRLAHLAQRPDGGTEWACPQCGRYLIRYPDTHLVLAIGAPGPAHILGPEYREDPPAVASVSEFDQQFLQRHAMAWSADHRPE*
Ga0075417_100206311	3300006049	Populus Rhizosphere	VPMQPIHRLAHLAERSDGGVEWACPQCGRYLVRYLDTQLVLAVGAPGPVHVLGPGYRDDPPEVVIVSEFDEQFLHRHAMAW
Ga0075417_104436581	3300006049	Populus Rhizosphere	VSMQPIHRLADLGQRPDGGTEWACPQCGRYLVRYPAGEVVVAAGVPGPTHVLGPGYRDDSTNVPAVSESDQLFLDSHAMAW*
Ga0075428_1000314315	3300006844	Populus Rhizosphere	VPMQPIHRLAHLAERSDGGVEWACPQCGRYLVRYPDTQLVLVAGAPGPVHVLGTEYRDDPTEAVIVSEFDEQFLHRHALAWSADHRPELKEQP*
Ga0075428_1001484295	3300006844	Populus Rhizosphere	VSMQPIHRLADLGQRPDGGTEWACPQCGRYLVRYPAGEVVVAAGMPGPTHVLGPGYRDDSTNVPAVSESDQLFLDSHAMAW*
Ga0075428_1015380662	3300006844	Populus Rhizosphere	VPMQPVHRLAHLAQRPDGGVEWACPQCGRYLIRYPDTQLVVAAGAPGPAHILGPEYRDDPPEAPTMSQFDEQFLHRHAMAWSADHRSD*
Ga0075421_1001731775	3300006845	Populus Rhizosphere	VPMPPIHHLVHLAQRSDGGVEWACPQCGRYLIRYPNRELVVAAGVPGPAHILGPEYRDDPTESATVSEFDEQFLHRHAMAWSADHRSEPKETQ*
Ga0075421_1016643102	3300006845	Populus Rhizosphere	MQPIHRLADLGQRPDGGTEWACPQCGRYLVRYPAGEVVVAAGVPGPTHVLGPGYRDDSTNVPAVSESDQLFLDSHAMAW*
Ga0075431_1014967091	3300006847	Populus Rhizosphere	PRTAKPQLHHGPPGLQLKGECPVPMQPIHRLAHLAQRPDGGVEWACPQCGRYLIRYPDTQLVVAAGASGPAHILGPEYRDDPPQAPTMSQFDEQFLHRHAMAWSADHRSD*
Ga0075433_101914781	3300006852	Populus Rhizosphere	MQPIHRLAHLAQQSDGGVEWACPQCGRYLVRYPDTQLVLAAGAPGPVHVLGSRYRNDPTEDPTVSESDQQFLHRHAMAW*
Ga0075420_1018223281	3300006853	Populus Rhizosphere	RPPAAPARLFTLVLQAHSKKEGNVPVSMQPIHRLADLGQRPDGGTEWACPQCGRYLVRYPAGEVVVAAGMPGPTHVLGPGYRDDSTNVPAVSESDQLFLDSHAMAW*
Ga0075434_1003995321	3300006871	Populus Rhizosphere	VPMQPIHRLVHLAQRSDGGVEWACPQCGRYLVRYPDTQLVLAAGAPGPVHVLGSRYRNDPTEDPTVSESDQQFLHRHAMAW*
Ga0075429_1007827931	3300006880	Populus Rhizosphere	VPMQPVHRLAHLAQRPDGGVEWACPQCGRYLIRYPDTQLVVAAGASGPAHILGPEYRDDPPQAPTMSQFDEQFLHRHAMAWSADHRSD*
Ga0075424_1021766102	3300006904	Populus Rhizosphere	QAHSKKEGNVPVSMQPIHRLADLGQRPDGGTEWACPQCGRYLVRYPAGEVVVAAGMPGPTHVLGPGYRDDSTNVPAVSESDQLFLDSHAMAW*
Ga0075419_104547631	3300006969	Populus Rhizosphere	VPMQPIHRLAHLAERSDGGVEWACPQCGRYLVRYPDTQLVLVAGAPGPVHVLGTEYRDDPTEAVIVSEFDEQFLHRHALA
Ga0111539_105768711	3300009094	Populus Rhizosphere	MPPIHHLVHLAQRSDGGVEWACPQCGRYLIRYPNRELVVAAGVPGPAHILGPEYRDDPTESATVSEFDEQFLHRHAMAWSADHRPD*
Ga0075418_100267038	3300009100	Populus Rhizosphere	MQPIHRLAHLAERSDGGVEWACPQCGRYLVRYPDTQLVLVAGAPGPVHVLGTEYRDDPTEAVIVSEFDEQFLHRHALAWSADHRPELKEQP*
Ga0075418_109529932	3300009100	Populus Rhizosphere	MQPIHRLAHLAQRPDGGVEWACPQCGRYLIRYPDTQLVVAAGASGPAHILGPEYRDYPPEAPTMSQFDEQFLHRHAMAWSADHRSD*
Ga0114129_100149702	3300009147	Populus Rhizosphere	MPPIHHLVHLAQRSDGGVEWACPQCGRYLIRYPNRELVVAAGVPGPAHILGPEYRDDPTESATVSEFDEQFLHRHAMAWSADHRSEPKETQ*
Ga0114129_101242765	3300009147	Populus Rhizosphere	MQPIHRLAQLAQRSDGGTEWACPQCGRYLIRYPNRELVVAAGTPGPAHILGPEYRNDPSEGPAMTEFDQQFLHRHAMAWSADHRPD*
Ga0114129_113323182	3300009147	Populus Rhizosphere	MQPIHRLAHLAQRPDGGVEWACPQCGRYLIRYPDTQLVVAAGASGPAHILGPEYRDDPPQAPTMSQFDEQFLHRHAMAWSADHRSD*
Ga0111538_105484451	3300009156	Populus Rhizosphere	MQPIHRLADLGQRPDGGTEWACPQCGRYLVRYPAGEVVVAAGMPGPTHVLGPGYRDDSTNVPAVSESDQLFLDSHAMAW*
Ga0126313_100465936	3300009840	Serpentine Soil	MQPIHRLAHLAQRPDGGVEWACPQCGRYLIRYPNRELVVAAGAPGPAHILGSGYRDDPPEGPTLSEFDEQFLHRHAMAWSADHRPDPKEQQ*
Ga0126315_100038616	3300010038	Serpentine Soil	MQPIHRLAHLAQRPDGGVEWACPQCGRYLIRYPNRELVVAAGAPGPAHILGSGYRDDPPEGPTLSEFDEQFLHRHAMAWSADHRPDPKEQ*
Ga0126308_108512792	3300010040	Serpentine Soil	MQPIHRLAHLAQRADGGVEWACPQCGRYLIRYPNRELVVAAGVAGPAHILGPEYRDDPPKDTTVSEFDQQF
Ga0126312_112933212	3300010041	Serpentine Soil	MQPIHRLAHLAQRPDGGVEWACPQCGRYLVRYPDTQLVLAAGAAGPAHILGPGYRDNPTEAPTVSEFDQQFLHRHAMVWPADRRPEQKERQ*
Ga0126314_111178432	3300010042	Serpentine Soil	MQPIHRLAHLAQRADGGVEWACPQCGRYLIRYPNRELVVAAGVAGPAHILGPEYRDDPPKDTTVSEFDQQFLHHHAMAWPADHGPN*
Ga0126310_105850312	3300010044	Serpentine Soil	MQPIHRLAHLAQRADGGVEWACPQCGRYLIRYPNRELVVAAGVAGPAHILGPEYRGDPAEGPTVSEFDQQFLHRHAMAWPADHWPELKEQQ*
Ga0126311_110641052	3300010045	Serpentine Soil	MQPIHRLAHLAQRSDGGVEWACPQCGRYLIRYPNRELVVAAGVPGPAHILGPSYRDDPPEGPSVSEFDQQFLHRHAMAWSADHRPNRKEQP*
Ga0126321_10328623	3300010145	Soil	EVFPMPMQPIHRLANLAQRPDGAIEWACPRCGRYLLRYPDTQLVLAAGAPNIVHVLGEGYPAAPIDVPTMSEFDQQFLHAHAMGW*
Ga0162651_1000641521	3300012938	Soil	DSFHLMLQAHSQKGGNVSVPTQPIHRLAHLAQRPDGGVEWACPQCGRYLVRYPNRELVVAAGAPGPSHILGSGYRDDPLEGPSVSEFD*
Ga0182000_101064602	3300014487	Soil	MQPIHRLAHLAQRPDGGVEWACPQCGRYLIRYPDTQLVVAAGAPGPTHILGPEYRDDPPETPTMSQFDEQFLHRHAMAWSADHRSIEEEQ*
Ga0182000_101723062	3300014487	Soil	MPMQPIHHLANLAQRPDGAVEWACPRCGRYLVRYPDTQLVLAAGAPDTVHVLGGRYPATPTDFLAMSEYDRQFLHAHAIGW*
Ga0184635_100629522	3300018072	Groundwater Sediment	VPMQPIHRLAHLAQRPDGGVEWACPQCGRYLIRYPDTQLVLAAGAPGPAHILVPEYRDDPPEAPTMSQFDEQFLHRHAMAWSADHRSD
Ga0184635_101714552	3300018072	Groundwater Sediment	VPMQPIHRLAQLAQRSDGGVEWACPQCGRYLIRYPTRELVVAAGVSGPAHILGPEYRDDPTEAAIVSEFDQQFLHRHAMVWPAHRRPELKERQ
Ga0184612_103903673	3300018078	Groundwater Sediment	VPTQPIHRLAHLAQRPDGGVEWACPQCGRYLIRYPDTQLVVALGAPGPAHILGPEYRDDPPEAPTMSQFDEQFLHRHAMAWSADHHPEQKEQQ
Ga0184625_100092706	3300018081	Groundwater Sediment	MPMQPIHRLAHLAQRADGGVEWACPQCGRYLIRYPKRELVVAAGVSGPAHILGPEYRDDPTEAPTVSEVDQQFLHRHAMAWPTVGPN
Ga0184625_102463951	3300018081	Groundwater Sediment	AHSQKGGNVSVPTQPIHRLAHLAQRPDGGVEWACPQCGRYLVRYPNRELVVAAGAPGPSHILGSGYRDDPLEGPSVSEFD
Ga0184625_104544992	3300018081	Groundwater Sediment	VPMQPIHRLAHLAQRPDGGVEWACPQCGRYLIRYPDTQLVLAAGAPDPAHILGPEYQDDPTEGPTVNELDQQFLHRHAMAWSADHRPRLKGKP
Ga0190268_107896362	3300018466	Soil	VPMQPIHRLAHLAQRPDGGVEWACPQCGRYLIRYPDTQLVVAAGAPVPAHILGPEYRDDPPEAPTMSQFDEQFLHRHAMAWSADHRSD
Ga0222621_11301151	3300021510	Groundwater Sediment	VPMQPIHRLAHLAQRPDGGVEWACPQCGRYLIRYPDTQLVVAAGASGPAHILGPEYRDDPPEAPTMSQFDEQFLHRHAMAWSTVGPN
Ga0222623_100975702	3300022694	Groundwater Sediment	VPMQPIHRLAHLAHRSDGGVEWACPRCGRYLVRYPDTQLVLAAGAPGPAHILGPGYRDGPLDGLTVSEFDEQFLRSHAMAWSPDHRPVRKEQL
Ga0222623_102199081	3300022694	Groundwater Sediment	VAMQPVHRLAHLAQRPDGGVEWACSQCGRYLIRYPDTQLVVAAGAPGAAHILGPEYRDDPPEAPTMSQFDEQFLHRHAMAWSADHRSD
Ga0222622_100739913	3300022756	Groundwater Sediment	MPMQPIHRLAHLAQRADGGVEWACPQCGRYLIRYPKRELVVAAGVSGPAHILGPEYRDDPTESATVSEFDEQFLHRHAMAWSTVGPN
Ga0209795_100595922	3300027718	Agave	MPMQPIHRLANLAQRPDGAVEWACPRCGRYLVRYPDTQLVLAAGAPDTVHVLGDRYPAAPIDVAAMSEFDQQFLHAHAIGW
Ga0209814_101627921	3300027873	Populus Rhizosphere	VSMQPIHRLADLGQRPDGGTEWACPQCGRYLVRYPAGEVVVAAGVPGPTHVLGPGYRDDSTNVPAVSESDQLFLDSHAMAW
Ga0207428_111588201	3300027907	Populus Rhizosphere	VPMPPIHHLVHLAQRSDGGVEWACPQCGRYLIRYPNRELVVAAGVPGPAHILGPEYRDDPTESATVSEFDEQFLHRHAMAWSADHRSEP
Ga0209382_100282844	3300027909	Populus Rhizosphere	VPMPPIHHLVHLAQRSDGGVEWACPQCGRYLIRYPNRELVVAAGVPGPAHILGPEYRDDPTESATVSEFDEQFLHRHAMAWSADHRSEPKETQ
Ga0209382_118879251	3300027909	Populus Rhizosphere	VPMQPIHRLADLAQRPDGGVEWACPQCGRYLVRYPDTQLVLVAGAPGPVHVLGTEYRDDPTEAVIVSEFDEQFLHRHALAWSADHRPELKEQP
Ga0247828_104203212	3300028587	Soil	VPMQPIHRLAHLAQRSDGGVEWACPQCGRYLIRHPNRELVVAAGVPGPAHVLGPSYRDDPPEGPSMSEFDQQFLHRHAMAWSADHRPD
Ga0247818_114077582	3300028589	Soil	VAMQPIHRLADLGQRPDGGVEWACPHCGHYLVRYPHTQLVVAAGVPGPVHVLGSRYQDDPTEVPTKSEFDEQFLHGHAIAW
Ga0307301_100793192	3300028719	Soil	VPIQPIHRLVDLGQRSDGGVEWACPQCGRYLVRYPETQLVLAAGAAGPIHVLGPGYRDEPPEGPALSEFDQQFLHRHAMAWSADHRSH
Ga0307301_101492692	3300028719	Soil	MPMQPIHRLAHLAQRADGGVEWACPQCGRYLIRDPNRELVVAAGVSGPAHILGPEYRDDPTEAPTVSEVDQQFLHRHAMAWPTVGPN
Ga0307317_103195672	3300028720	Soil	VPMQPIHRLAHLAQRPDGGVEWACPQCGRYLIRYPDTQLVVAAGASGPAHILGPEYRDDPPEAPTMSQFDEQFLHRHAMAWSADHWSD
Ga0307319_100044572	3300028722	Soil	VPMQPIHRLVDLGQRSDGGVEWACPQCGRYLVRYPETQLVLAAGAAGPIHVLGPGYRDEPPEGPALSEFDQQFLHRHAMAWSADHRSH
Ga0307319_100867722	3300028722	Soil	VPMQPIHRLVDLSQRSDGGVEWACPQCGRYLVRHPDTELVLASGASGPAHILGPGFRDDPPEGPSVSEFDQQFLRSHAMAWSADHRPH
Ga0307319_101801322	3300028722	Soil	VPMQPIHRLVDLAQRPDGGVEWACPQCGRYLVRHPDTELVLVAGAPGPAHILGPGYRDDPPEGPSVSEFDEQFLHRHAMAWSADHRPH
Ga0307319_103314331	3300028722	Soil	LAHVAPRSDGGTEWACPQCGRYLIRYPNRELVVAAGALGPVHILGPSYRDDPPEGPSVSEFDQQFLHRHAMAWSADHQPNRKEQP
Ga0307318_100853142	3300028744	Soil	VPMQPIHRLAHLAQRADGGTEWAWPQCGRYLVRYPDTQLVLAAGAPGPAHILGPGYRDHPLEGPTVSEFDQQFLHRHAMAWSTDHRPQPKEQQ
Ga0307318_101158692	3300028744	Soil	VPMQPIHRLAHLAQRSDGGVEWACPQCGRYLIRYPDTQLVVAAGASGPAHILGPEYRDDPPEAPTMSQFDEQFLHRHAMAWSADHRSD
Ga0307318_102618991	3300028744	Soil	HRLAHLAQRSDGGVEWACPQCGRYLIRYPNRELVVAAGVAGPAHILGPEYRGDPPEGPTMSEFDQQFLHRHAMAWSADYRPQPKETP
Ga0307318_102626502	3300028744	Soil	MPMQPIHRLAHLAQRSDGGVEWACPQCGRYLVRYPDTERVLAAGAPGPAHVLGSGYRGEPVDGPTVSEFDQQFLHAHAMAWSADHWPDRKEQQ
Ga0307316_101900372	3300028755	Soil	HRSDGGVEWACPRCGRYLVRYPDTQLVLAAGAPGPAHILGPGYRDGPLDGLTVSEFDEQFLRSHAMAWSPDHRPVRKEQL
Ga0307320_100532441	3300028771	Soil	VPMQPIHRLVDLSQRSDGGVEWACPQCGRYLVRHPDTELVLASGASGPAHILGPGFRDDPPEGPSVSEFDQQ
Ga0307320_100944213	3300028771	Soil	VAMQPVHRLAHLAQRPDGGVEWACSQCGRYLIRYPHTQLVVAAGAPGAAHILGPEYRDDPPEAPTMSQFDEQFLHRHAMAWSADHRSD
Ga0307320_101211772	3300028771	Soil	VPMQPIHRLAHLAQRPDGGVEWACPQCGRYLIRYPDTQLVVAAGASGPAHILGPEYRDDPPEAPTMSQFDEQFLHRHAMAWSADHRSD
Ga0307320_102387302	3300028771	Soil	MPMQPIHRLAHLAQRADGGVEWACPQCGRYLIRYPNRELVVAAGVSGPAHILGPEYRDDPTEGPTVSQVDQQFLHRHAMAWPTVGPN
Ga0307320_103427971	3300028771	Soil	VPMQPIHRLAHLAQRPDGGVEWACPQCGHYLVRYPDTELVLAVGAPGPAHILGPEYRDDPTDAPAMSELDQQFLRCHAMAWPADHRPELKDRQ
Ga0307287_101488432	3300028796	Soil	VPMQPIHRLAHLAQRSDGGVEWACPQCGRYLVRYPDTERVLAAGAPGPAHVLGSGYRGEPVDGPTVSEFDQQFLHAHAMAWSADHWPDRKEQQ
Ga0307287_102274941	3300028796	Soil	MPMQPIHRLADLGQRPDGGVEWACPQCGRYLIRYPDTQLVLAAGAPDPAHILGPEYQDDPTEGPTVNELDQQFLHRHAMAWSADHRPRLKGKP
Ga0307302_100928392	3300028814	Soil	VPMQPVHRLAHLAQRPDGGVEWACSQCGRYLIRYPHTQLVVAAGAPGAAHILGPEYRDDPPEAPTMSQFDEQFLHRHAMAWSADHRSD
Ga0307302_102666142	3300028814	Soil	VSMQPIHRLAQLAQRSDGGTEWACPQCGRYLVRYPDTQLVLAAGALGPVHILGPEYRGDLPEGPTLTQFDQQFLHRHAMAWSADHQPN
Ga0307302_102823212	3300028814	Soil	MPMQPIHRLAHLAQRADGGVEWACPQCGRYLIRDPNRELVVAAGVSGPAHILGPEYRDDPTEAPTVREVDQQFLHRHAMAWPTVGPN
Ga0307302_103268512	3300028814	Soil	VPMQPIHRLAHLAQRPDGGVEWACPQCGRYLIRYPDTQLVLAAGAPGPAHILGPEYRDDPPEAPTMSQFDEQFLHRHAMAWSADHWSD
Ga0307277_102898841	3300028881	Soil	VPMQPIHRLVDLSQRSDGGVEWACPQCGRYLVRYPDTQLVLAAGAPGPAHILGPGYRDGPLDGLTVSEFDEQFLRSHAMAWSPDHRPVRKEQL
Ga0247826_108390091	3300030336	Soil	SSRPTARNEGVPVPMQPIHRLAHLAQQSDGGVEWACPRCGRYLVRYPDSELVMAAGAPGPVHVLGSGYRDDATEVPTVSESDQQFLHRHALAW
Ga0268243_11799972	3300030510	Soil	VPMQPIHRLAHLAQRPDGGVEWACPQCGRYLIRYPDTQLVVAAGAPGPTHILGPEYRDDPPETPTMSQFDEQFLHRHAMAWS
Ga0268255_100649182	3300030516	Agave	MPMQPIHRLANLAQRPDGAVEWACPRCGRYLVRYPDTQLVLAAGASDTIHLLGDRYPAAPIDVAAMSEFDQQFLHAHAIGW
Ga0307405_103243162	3300031731	Rhizosphere	VPMQPIHRLAHLAQRPDGGVEWACPQCGRYLVRYPDTQLVLAAGAAGPAHILGPGYRDDPTEAPTVSEFDQQFLHRHAMVWPADRRPELKERQ
Ga0307406_103547742	3300031901	Rhizosphere	VPMQPIHRLAHLAQRPDGGVEWACPQCGRYLIRYPNRELVVAAGAPGPAHILGSGYRDDPPEGPTLSEFDEQFLHRHAMAWSADHRPDPKEQQ
Ga0307406_113256871	3300031901	Rhizosphere	VPMQPIHRLADLAQRPDGGVEWACPQCGRYLVRYPDSQLVLAAGAPGPTHILGPEYRDDLPEGPSVSEFDEQFLHRHAMAWSADCRPD
Ga0307409_1006817192	3300031995	Rhizosphere	VPMQPIHRLADLAQRPDGGVEWACPQCGRYLVRYPDSQLVLAAGAPGPTHILGPEYRDDSPEGPSVSEFDEQFLHRHAMAWSADCRPD
Ga0307409_1011830632	3300031995	Rhizosphere	VPMQPIHRLAHLAQRSDGGVEWACPQCGRYLVRYPDTELVLAAGASGPAHVLGSGYRDDPVDGPTVSEFDQQFLHRHAMAWSADHWPERKEQQ
Ga0307415_1008280512	3300032126	Rhizosphere	VPMQPIHRLAHLAQRPDGGVEWACPQCGRYLVRYPDTQLVLAACAAGPAHILGPGYRDDPTEAPTVSEFDQQFLHRHAMVWPADRRPELKERQ
Ga0268251_101210462	3300032159	Agave	VPMQPIHRLADLGHRPDGGVEWACPQCGRYLIRYPHTQLVLAAGAAGPAHLLGPQYRDDPPEVPTVSELDEQFLHAHAMAW
Ga0247829_109348652	3300033550	Soil	VPMQPIHRLAHLAQRPDGGVEWACPQCGRYLIRYPDTQLVVAAGAPDPTHILGPEYRDDPPQAPTMSQFDEQFLHRHAMAWSADHRSD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093470

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences