Metagenome / Metatranscriptome Family F093452

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093452
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	51 residues
Representative Sequence	VDLIRFGGRVDYVDLVSSSFVEESLQVLGGIRISIRCSLVAAGERPVAI
Number of Associated Samples	95
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	40.57 %
% of genes near scaffold ends (potentially truncated)	45.28 %
% of genes from short scaffolds (< 2000 bps)	91.51 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.21

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.340 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (16.981 % of family members)
Environment Ontology (ENVO)	Unclassified (46.226 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (54.717 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.88% β-sheet: 0.00% Coil/Unstructured: 83.12%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.21
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.21
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF13683	rve_3	60.38
PF01527	HTH_Tnp_1	7.55
PF01850	PIN	3.77
PF13414	TPR_11	1.89
PF02604	PhdYeFM_antitox	1.89
PF13333	rve_2	1.89
PF13276	HTH_21	1.89
PF01797	Y1_Tnp	1.89
PF13424	TPR_12	1.89
PF02687	FtsX	0.94
PF04015	DUF362	0.94
PF00665	rve	0.94
PF13751	DDE_Tnp_1_6	0.94
PF13358	DDE_3	0.94
PF13744	HTH_37	0.94
PF04389	Peptidase_M28	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	1.89
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	1.89
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	1.89
COG2006	Uncharacterized conserved protein, DUF362 family	Function unknown [S]	0.94
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.94
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.94
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.94
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.34 %
Unclassified	root	N/A	5.66 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.34 %
Unclassified	root	N/A	5.66 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.34 %
Unclassified	root	N/A	5.66 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	12.26 %
Unclassified	root	N/A	5.66 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.72 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.94 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	7.55 %
Unclassified	root	N/A	5.66 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.94 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.94 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.55 %
Unclassified	root	N/A	5.66 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.94 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.94 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.55 %
Unclassified	root	N/A	5.66 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	0.94 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.94 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.55 %
Unclassified	root	N/A	5.66 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.94 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.94 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.55 %
Unclassified	root	N/A	5.66 %
Limnoglobus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Limnoglobus	0.94 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	0.94 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	0.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.55 %
Unclassified	root	N/A	5.66 %
Luteitalea sp. TBR-22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	0.94 %
unclassified Gemmatimonas	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas	0.94 %
Limnoglobus roseus	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Limnoglobus → Limnoglobus roseus	0.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.55 %
Unclassified	root	N/A	5.66 %
Gemmatimonas sp. SG8_23	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp. SG8_23	0.94 %
Luteitalea sp. TBR-22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	0.94 %
Limnoglobus roseus	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Limnoglobus → Limnoglobus roseus	0.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459009\|GA8DASG01BFY3Z	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300001686\|C688J18823_10413585	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300002568\|C688J35102_119722035	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300002917\|JGI25616J43925_10125587	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300004463\|Ga0063356_101695705	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300004782\|Ga0062382_10662576	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300005093\|Ga0062594_100881571	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300005171\|Ga0066677_10622963	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300005331\|Ga0070670_100641936	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300005332\|Ga0066388_101536704	All Organisms → cellular organisms → Bacteria	1167	Open in IMG/M
3300005336\|Ga0070680_100118318	All Organisms → cellular organisms → Bacteria	2210	Open in IMG/M
3300005336\|Ga0070680_100148312	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1969	Open in IMG/M
3300005344\|Ga0070661_101283107	Not Available	614	Open in IMG/M
3300005356\|Ga0070674_101823703	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300005455\|Ga0070663_101165985	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	676	Open in IMG/M
3300005458\|Ga0070681_10229991	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1769	Open in IMG/M
3300005458\|Ga0070681_10780902	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300005530\|Ga0070679_100677875	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300005535\|Ga0070684_100020413	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5497	Open in IMG/M
3300005564\|Ga0070664_100826505	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300005614\|Ga0068856_100865042	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300005616\|Ga0068852_100370624	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1403	Open in IMG/M
3300005617\|Ga0068859_101028770	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300005713\|Ga0066905_101758933	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300005719\|Ga0068861_100449746	All Organisms → cellular organisms → Bacteria → Proteobacteria	1154	Open in IMG/M
3300005764\|Ga0066903_103233419	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300006844\|Ga0075428_101712136	Not Available	656	Open in IMG/M
3300006845\|Ga0075421_100222436	All Organisms → cellular organisms → Bacteria	2326	Open in IMG/M
3300006854\|Ga0075425_100251648	All Organisms → cellular organisms → Bacteria	2032	Open in IMG/M
3300006876\|Ga0079217_10166518	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300007004\|Ga0079218_12758530	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300007004\|Ga0079218_12933242	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp. SG8_23	573	Open in IMG/M
3300009038\|Ga0099829_10218635	All Organisms → cellular organisms → Bacteria	1547	Open in IMG/M
3300009093\|Ga0105240_12576245	All Organisms → cellular organisms → Bacteria → Acidobacteria	526	Open in IMG/M
3300009137\|Ga0066709_103886765	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300009156\|Ga0111538_10431974	All Organisms → cellular organisms → Bacteria → Proteobacteria	1668	Open in IMG/M
3300010036\|Ga0126305_10669190	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300010040\|Ga0126308_10457541	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300010044\|Ga0126310_10324603	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300010359\|Ga0126376_11579357	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300010396\|Ga0134126_12981698	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300010403\|Ga0134123_11807023	Not Available	665	Open in IMG/M
3300011119\|Ga0105246_10149153	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1768	Open in IMG/M
3300012207\|Ga0137381_11098834	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300012363\|Ga0137390_10915099	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300012909\|Ga0157290_10135552	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300012918\|Ga0137396_11036985	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300012927\|Ga0137416_11839933	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300012944\|Ga0137410_10621942	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300012961\|Ga0164302_11005945	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300012986\|Ga0164304_10699420	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300013104\|Ga0157370_10394235	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Limnoglobus → Limnoglobus roseus	1275	Open in IMG/M
3300013105\|Ga0157369_10117067	All Organisms → cellular organisms → Bacteria → Acidobacteria	2829	Open in IMG/M
3300013105\|Ga0157369_11536678	All Organisms → cellular organisms → Bacteria → Acidobacteria	677	Open in IMG/M
3300013307\|Ga0157372_10736325	All Organisms → cellular organisms → Bacteria	1147	Open in IMG/M
3300014318\|Ga0075351_1092499	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300014326\|Ga0157380_11359268	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300015374\|Ga0132255_101632178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	977	Open in IMG/M
3300015374\|Ga0132255_103928332	Not Available	631	Open in IMG/M
3300015374\|Ga0132255_104070256	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300018432\|Ga0190275_12334115	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300018469\|Ga0190270_12722712	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300018476\|Ga0190274_11992070	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300019362\|Ga0173479_10640892	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300019377\|Ga0190264_11277953	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300019868\|Ga0193720_1042054	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300019882\|Ga0193713_1150670	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300020004\|Ga0193755_1048104	All Organisms → cellular organisms → Bacteria	1396	Open in IMG/M
3300020082\|Ga0206353_11952270	Not Available	710	Open in IMG/M
3300022756\|Ga0222622_10828384	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300025315\|Ga0207697_10434384	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300025556\|Ga0210120_1070326	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300025901\|Ga0207688_10753842	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300025912\|Ga0207707_10217550	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1663	Open in IMG/M
3300025921\|Ga0207652_10309751	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300025923\|Ga0207681_10248989	All Organisms → cellular organisms → Bacteria	1386	Open in IMG/M
3300025925\|Ga0207650_10520413	Not Available	995	Open in IMG/M
3300025926\|Ga0207659_10265071	All Organisms → cellular organisms → Bacteria	1399	Open in IMG/M
3300025930\|Ga0207701_10137996	All Organisms → cellular organisms → Bacteria	2165	Open in IMG/M
3300025932\|Ga0207690_11258223	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300025940\|Ga0207691_10934635	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300026067\|Ga0207678_10311422	All Organisms → cellular organisms → Bacteria	1354	Open in IMG/M
3300026078\|Ga0207702_10781467	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	943	Open in IMG/M
3300026078\|Ga0207702_11460068	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300026118\|Ga0207675_100527305	All Organisms → cellular organisms → Bacteria → Proteobacteria	1178	Open in IMG/M
3300026142\|Ga0207698_10841896	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	922	Open in IMG/M
3300027846\|Ga0209180_10137589	All Organisms → cellular organisms → Bacteria	1404	Open in IMG/M
3300027909\|Ga0209382_10193061	All Organisms → cellular organisms → Bacteria	2337	Open in IMG/M
3300028824\|Ga0307310_10259417	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300031852\|Ga0307410_11453379	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300031910\|Ga0306923_12112550	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300031944\|Ga0310884_10258317	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300031995\|Ga0307409_101443006	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300031996\|Ga0308176_10780721	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	997	Open in IMG/M
3300032013\|Ga0310906_10067818	All Organisms → cellular organisms → Bacteria	1837	Open in IMG/M
3300032174\|Ga0307470_11221409	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300032261\|Ga0306920_102432463	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300032782\|Ga0335082_10468481	All Organisms → cellular organisms → Bacteria	1122	Open in IMG/M
3300032783\|Ga0335079_10426876	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300033004\|Ga0335084_11260942	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300033412\|Ga0310810_10121971	All Organisms → cellular organisms → Bacteria	3073	Open in IMG/M
3300033412\|Ga0310810_10307981	All Organisms → cellular organisms → Bacteria	1696	Open in IMG/M
3300033412\|Ga0310810_10349780	All Organisms → cellular organisms → Bacteria	1555	Open in IMG/M
3300033475\|Ga0310811_10114270	All Organisms → cellular organisms → Bacteria → Acidobacteria	3471	Open in IMG/M
3300033475\|Ga0310811_10423580	All Organisms → cellular organisms → Bacteria	1441	Open in IMG/M
3300033475\|Ga0310811_10435402	All Organisms → cellular organisms → Bacteria	1412	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	63.21%
Host-Associated	Host-Associated	36.79%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.38%
Plants	Host-Associated → Plants	36.79%
Aquatic	Environmental → Aquatic	2.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.38%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.58%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.21%
Freshwater	Environmental → Aquatic → Freshwater	0.94%
Marine	Environmental → Aquatic → Marine	0.94%
Sediment	Environmental → Aquatic → Sediment	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.40%
Loam	Environmental → Terrestrial → Soil → Loam	13.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.21%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.38%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.38%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.83%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.94%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.38%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.55%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.83%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	7.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.60%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.72%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.77%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.89%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.94%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.94%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004782	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014318	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rd	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019868	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s1	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025556	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F47_02757730	2170459009	Grass Soil	ETGSVGLIRFGGRVNYVDLVSSSFVEESLQALGGIRISIRRSLVAAGERPVAI
C688J18823_104135851	3300001686	Soil	DLIRFGGRVTYVDLVSSSFVEESLQALGGIGISIRRSRVAAGERPVAI*
C688J35102_1197220352	3300002568	Soil	LIRFGGRVTYVDLVSSSFVEESLQALGGIGISIRRSRVAAGERPVAI*
JGI25616J43925_101255872	3300002917	Grasslands Soil	DLIRFGGRVNYVDLVIVVLRRRESTALGGIRISIRHSLVAAGERPVAI*
Ga0063356_1016957052	3300004463	Arabidopsis Thaliana Rhizosphere	VDLIRFGGRVNYVDLVSSSFVEESLQALGGIRVSIRWSLVAAGERPVVI*
Ga0062382_106625762	3300004782	Wetland Sediment	AICRPVGLIRFGGRVDYVDLVSSSFVEESLQALGGIRISTRRSLVAAGERPVAI*
Ga0062594_1008815712	3300005093	Soil	MLDLIRFGGRVDYVDLVSSSFVEESLQVLGGVRISIRGSLVAAGERPVAI*
Ga0066677_106229632	3300005171	Soil	LIRFGGRVNYVDLVSSSFVEERLQVLGGIRISSRRSLVAAGERPVAI*
Ga0070670_1006419362	3300005331	Switchgrass Rhizosphere	MDLIRCGGRVDYVDLVSSSFVEESLQVLGGIRISIRCSLVAAGERPVAI*
Ga0066388_1015367042	3300005332	Tropical Forest Soil	MDLIRFGGRVTYVDLISSSFVEESLQAVGGVGISIRRSRVAAGERPVAI*
Ga0070680_1001183181	3300005336	Corn Rhizosphere	MDVIRFGGRVDYVDLVSSFFVEESLQGLGGIRISSRCSVVAAGERPVA
Ga0070680_1001483122	3300005336	Corn Rhizosphere	VGRDGRSLDLIRFGGRVDYVDLVSSSFVEESLQVLGGIGISIRGSRAAAGERPVAI*
Ga0070661_1012831071	3300005344	Corn Rhizosphere	VGRDGRSLDLIRFGGRVDYVDLVSSSFVEESLQVLGGIGISIRGSRAAAGERPVAV*
Ga0070674_1018237032	3300005356	Miscanthus Rhizosphere	MSVDLIRFGGRVDYVDLVSSSFVEESLQVLGGVRISIRGSLVAAGERPVAI*
Ga0070663_1011659852	3300005455	Corn Rhizosphere	VGRDGRSLDLIRFGGRVDYVDLVSSSFVEESLQVLGGVRISIRGSLVAAGERPVAI*
Ga0070681_102299911	3300005458	Corn Rhizosphere	VGRDGRSLDLIRFGGRVDYVDLVSSSFVEESLQVLGGIGISSRGSRAAAGERPVAI*
Ga0070681_107809022	3300005458	Corn Rhizosphere	LGLIRFSGRVDYVDRVMSSFVEESLQAFGGVEISICRSLVAAAERPGVS*
Ga0070679_1006778751	3300005530	Corn Rhizosphere	DVIRFGGRVDYVDLVSSFFVEESLQGLGGIRISSRCSVVAAGERPVAI*
Ga0070684_1000204136	3300005535	Corn Rhizosphere	VNLIRFGGRVDYDDPVSSSFVEESLQGLGGGGISSRRSRVDAGERPVAI*
Ga0070664_1008265052	3300005564	Corn Rhizosphere	MDLIRCGGRVDYVDLVSSSFVEESLQVLGGVRISIRCSLVAAGERPVAI*
Ga0068856_1008650422	3300005614	Corn Rhizosphere	VSSSFVEESLQVLGGVRVSIRGSLVAAGERPVAI*
Ga0068852_1003706244	3300005616	Corn Rhizosphere	VGRDGRSLDLIRFGGRVDYVDLVSSSFVEESLQVLGGTGISSRGSRAAAGERP
Ga0068859_1010287702	3300005617	Switchgrass Rhizosphere	EVSVVLNSIADAPPSGVHVDVGLIRFGGRVDYVDLVSSSFVEESLQVLGGIRISIRCSLVAAGERPVAI*
Ga0066905_1017589331	3300005713	Tropical Forest Soil	DLIRFGGRVNYVDLISWSFVEESLQAVGGVGISIRRSLVAAGERPVAI*
Ga0068861_1004497463	3300005719	Switchgrass Rhizosphere	VDLIRFGGRVDYVDLVSSSFVEESLQVLGGVRISIRGSLVAAGERPVAI*
Ga0066903_1032334192	3300005764	Tropical Forest Soil	LDLIRFGGRVDYVDLVSSSFVEESLRVLGGIRVSIRYSVVAAGERPVAI*
Ga0075428_1017121362	3300006844	Populus Rhizosphere	MGLIRFGGRIDYVDLVSSSSVEESLQALGGIRISLRRSVVAAGERPVAI*
Ga0075421_1002224362	3300006845	Populus Rhizosphere	MIGGALPLELGLTRFGGRVNYVDPVSSPFVEESLQGLDGVGISSRRSPVDAGEPPVAI*
Ga0075425_1002516482	3300006854	Populus Rhizosphere	MGLIRFGGRVNYVDPVSSLFVEESLQGLGGVGISSRRSPVDAGEHPVAI*
Ga0079217_101665182	3300006876	Agricultural Soil	MIRFGGRVDYVDLVSSSFVEESLQALGGVRISIRRSLVAAGERPVAI*
Ga0079218_127585302	3300007004	Agricultural Soil	MRTPPRAVALQLDLIRFGGRVDYVDLVSSSFVEESLQVLGGIRISIRCSLVAAGERPVAI
Ga0079218_129332421	3300007004	Agricultural Soil	VDLIRFGGRVEYVDLVSSSFVEESLQVLGGVRISIRCSLVAA
Ga0099829_102186351	3300009038	Vadose Zone Soil	VGLIRFGGRVNYVDLVSSSFVEESLHALGGIRISIRRSLVAAGERPVAI*
Ga0105240_125762452	3300009093	Corn Rhizosphere	VGRDGRSLDLIRFGGRVDYVDLVSSSFVEESLQVLGGVRISIRGSLVAAGERP
Ga0066709_1038867652	3300009137	Grasslands Soil	LDLIRFGGRVHYVDRVSSSFVEESLQALGGIRISIRRSLVAAGERPVAI*
Ga0111538_104319744	3300009156	Populus Rhizosphere	DLIRFGGRVDYVDLVSSSFVEESLQVLGGVRISIRGSLVAAGERPVAI*
Ga0126305_106691901	3300010036	Serpentine Soil	VSSSFVEESLQALGGIRVSIRRSLVAAGERPVAI*
Ga0126308_104575411	3300010040	Serpentine Soil	SSALDLIRFGGRVNYVDLVSSSFVEESLQALGGTRISIWRSRVGAGERPVAI*
Ga0126310_103246032	3300010044	Serpentine Soil	VDLIRFGGRVTYVDLVSSSVVEESLQPVGGGRMSICRSPVAAAERRAVI*
Ga0126376_115793572	3300010359	Tropical Forest Soil	LDLLRFGGRVNYVDLVSSSFVEESLQALVGIRIGLRCSLVAAGERPVAI*
Ga0134126_129816981	3300010396	Terrestrial Soil	SHFADNQPILDLIRFGRRVEYVDLVSSSFVEEGLQVLGGIRISIRCPLVAAGERPVAI*
Ga0134123_118070232	3300010403	Terrestrial Soil	MDLIRCGGRDDYVDLVSSSFVEESLQVLGGIRISIRCSLVAAGERPVAI*
Ga0105246_101491533	3300011119	Miscanthus Rhizosphere	MDLIRCGGRVDYVDLVSSSFVEESLQVLGGVRISIRGSLVAAGERPVAI*
Ga0137381_110988342	3300012207	Vadose Zone Soil	VDLIRFGGRVNYVDLVSSSFVEESLQALGGIRISIRRSLVAAGERPVAI*
Ga0137390_109150991	3300012363	Vadose Zone Soil	NTDQHSQILDLIRFGGRVNYVDLVSSSFVEESLQALGGIRISLRRSLVAAGERPVAI*
Ga0157290_101355522	3300012909	Soil	MGLIRFGGRVDYVDPASSSFVEERLQGLGGVGISHRRSPVDAGELPVAI*
Ga0137396_110369851	3300012918	Vadose Zone Soil	VARTFSRLQSTLNLDLIRFGGRVNYVDLVSSSFVEESLQALGGIRISTRRSPVAAGERPVAI*
Ga0137416_118399332	3300012927	Vadose Zone Soil	LDLIRFGGRVDYVDLVSSSFVEESLQALGGIRISTRRSPVAAGERPVAI*
Ga0137410_106219422	3300012944	Vadose Zone Soil	MLDDETIVGLIRFGGRVNYVDLVSSSFVEESLQALGGIRISIRRSFVAAGERPVAI*
Ga0164302_110059452	3300012961	Soil	RSHHDLNMIRFGGRVSYVDLVSSSFVEESVQGLGGVRISIRRSLVAADEHPVAI*
Ga0164304_106994202	3300012986	Soil	LGLIRFGGRVNYVDLVSSFFVEESLQALGGIRISIRRLLVAAGERPVAI*
Ga0157370_103942351	3300013104	Corn Rhizosphere	IRFGGRVDYVDLVSSSFVEESLQVLGGIGISIRGSRAAAGERPVAI*
Ga0157369_101170672	3300013105	Corn Rhizosphere	MDVIRFGGRVDYVDLVSSFFVEESLQGLGGIRISSRCSVVAAGERPVAI*
Ga0157369_115366782	3300013105	Corn Rhizosphere	VGRDGRALDLVRFGGRVDYVDLVSSSFVEESLQVLGGIGISIRGSRAAAGER
Ga0157372_107363251	3300013307	Corn Rhizosphere	DPNPPLMDVIRFGGRVDYVDLVSSFFVEESLQGLGGIRISSRCSVVAAGERPVAI*
Ga0075351_10924992	3300014318	Natural And Restored Wetlands	VGLIRFGGRVDYVDRVSSSFVEESLQAFGGGEISICRFLVAAAERPGAI*
Ga0157380_113592682	3300014326	Switchgrass Rhizosphere	LDLIRFGGRVDYVDLVSSSFVEESLQVLGGVRISIRGSLVAAGERPVAI*
Ga0132255_1016321782	3300015374	Arabidopsis Rhizosphere	VDLIRFGGRVSYVDLISSSFVEESLQAVGGVGISTRRSLVAAGERPVAI*
Ga0132255_1039283322	3300015374	Arabidopsis Rhizosphere	VGFIVDLIRFGGRVDCVDRVSSSFVEESLQGLGGNQISIRCSVVDADEHPVAI*
Ga0132255_1040702562	3300015374	Arabidopsis Rhizosphere	VRMEYGFHLDLIRFGGRVDYVDLVSSSFVEESLQVLGGIRVSIRRSLVAAGERPVAI*
Ga0190275_123341152	3300018432	Soil	MIRFGGRVNYVDLVSSSFVEESLQALGGVRISIRRSLVAAGERPVAI
Ga0190270_127227121	3300018469	Soil	MIRFVGRVNYVDLVSSSFVEESLQALGGVRISIRRSLVAAGERPVAI
Ga0190274_119920701	3300018476	Soil	MGTGLDLIRFGGRVNYDLVSSSFVEESLQALGGIRVSIRRSLVAAGERPVAI
Ga0173479_106408922	3300019362	Soil	YYATVGLIRFGGRVDYVDPVSSSFVEESLQGLGGAGISHRRSPVDAGELPVAI
Ga0190264_112779532	3300019377	Soil	MIRFGGRVNYVDLVPSSFVEESLQALGGVRISIRRSLVAAGERPVAI
Ga0193720_10420542	3300019868	Soil	GGRVNYVDLVSSSFIEESLQALGGIRISSRRSLVAAGERPVAI
Ga0193713_11506702	3300019882	Soil	RPTVDLIRFGGRVNYVDLVSSSFVEESLQALGGIRVSIRRSLVAAGERPVAI
Ga0193755_10481041	3300020004	Soil	TRPETHVDLIRFGGRVNYVDLVSSSFVEESLQALGGIRVSIRRSLVAAGERPVAI
Ga0206353_119522702	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	VGRDGRSLDLIRFGGRVDYVDLVSSSFVEESLQVLGGIGISIRGSRAAAGERPVAI
Ga0222622_108283842	3300022756	Groundwater Sediment	FRGRVNYVDLVSSSFVEESLQALGGIRVSIRRSLVAAGERPVAI
Ga0207697_104343841	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	AYARPPQSPAVDLIRFGGRVDYVDLVSSSFVEESLQALGGLRISIQRSLVPAGERPVAI
Ga0210120_10703261	3300025556	Natural And Restored Wetlands	VAYVDLVSLSFVEESLQGLGGIRIGIRCSRVAAGERPVAI
Ga0207688_107538421	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	SLDIHRYISAVDLIRFGGRVDYVDLVSSSFVEESLQVLGGVRISIRGSLVAAGERPVAI
Ga0207707_102175501	3300025912	Corn Rhizosphere	VGRDGRSLDLIRFGGRVDYVDLVSSSFVEESLQVLGGVRVSIRCSLVAAGERPVAI
Ga0207652_103097513	3300025921	Corn Rhizosphere	NQLRGLRVFGICAALDVIRFGGRVDYVDLVSSFFVEESLQGLGGIRISSRCSVVAAGERPVAI
Ga0207681_102489893	3300025923	Switchgrass Rhizosphere	RGRMDLIRFGGRVDYVDLVSSSFVEESLQVLGGVRISIRGSLVAAGERPVAI
Ga0207650_105204132	3300025925	Switchgrass Rhizosphere	MDLIRCGGRVDYVDLVSSSFVEESLQVLGGIRISIRCSLVAAGERPVAI
Ga0207659_102650713	3300025926	Miscanthus Rhizosphere	LRHALDLIRFGGRVDYVDLVSSSFVEESLQVLGGVRISIRGSLVAAGERPVAI
Ga0207701_101379962	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MLDLIRFGGRVDYVDLVSSSFVEESLQVLGGVRISIRGSLVAAGERPVAI
Ga0207690_112582232	3300025932	Corn Rhizosphere	VGRDGRSLDLIRFGGRVDYVDLVSSSFVEESLQVLGGIRISIRCSLVAAGEHPVAI
Ga0207691_109346353	3300025940	Miscanthus Rhizosphere	MDLIRFGGRVEYVDLVSSSFVEESQQALGGVGISVRRSLVVA
Ga0207678_103114222	3300026067	Corn Rhizosphere	VGRDGRSLDLIRFGGRVDYVDLVSSSFVEESLQVLGGTGVSSRGSRAAAGERPVAI
Ga0207702_107814672	3300026078	Corn Rhizosphere	VGRDGRSLDLIRFGGRVDYVDLVSSSFVEESLQVLGGVRVSIRGSLVAAGERPVAI
Ga0207702_114600681	3300026078	Corn Rhizosphere	RVDYVDLVSSSFVEESLQVLGGVRVSIRGSLVAAGERPVAI
Ga0207675_1005273051	3300026118	Switchgrass Rhizosphere	TATARSGAYARPPQSPAVDLIRFGGRVDYVDLVSSSFVEESLQVLGGVRISIRGSLVAAGERPVAI
Ga0207698_108418961	3300026142	Corn Rhizosphere	VGRDGRSLDLIRFGGRVDYVDLVSSSFVEESLQVLGGVRISIRGSLVAAGERPVAI
Ga0209180_101375891	3300027846	Vadose Zone Soil	GCTVGLIRFGGRVNYVDLVSSSFVEESLHALGGIRISIRRSLVAAGERPVAI
Ga0209382_101930613	3300027909	Populus Rhizosphere	MIGGALPLELGLTRFGGRVNYVDPVSSPFVEESLQGLDGVGISSRRSPVDAGEPPVAI
Ga0307310_102594172	3300028824	Soil	VDLVSSSFVEESLQALGGIRMSIRRSLVAAGERPVAI
Ga0307410_114533792	3300031852	Rhizosphere	VDLVSSSFVEESLQGLGGKRISIRCSVVAADEHPVAI
Ga0306923_121125502	3300031910	Soil	DLIRFGGRVDYVDPVSSSFVEESLQAFGGVGIRSRRSPVDAGERPVAI
Ga0310884_102583172	3300031944	Soil	VDLIRFGGRVDYVDLVSSSFVEESLQVLGGVRISIRGSLVAAGERPVAI
Ga0307409_1014430062	3300031995	Rhizosphere	STVRSGAMRSAVVDLIRFGGRVNYVDLVSSSFVEESLQALGGIRVSIRRSRVAAGERPVA
Ga0308176_107807212	3300031996	Soil	VDLIRFGGRVDYVDLVSSSFVEESLQVLGGIRISIRCSLVAAGEHPVAI
Ga0310906_100678181	3300032013	Soil	RYISAVDLIRFGGRVDYVDLVSSSFVEESLQVLGGVRISIRGSLVAAGERPVAI
Ga0307470_112214091	3300032174	Hardwood Forest Soil	VDLIRFGGRVDYVDLVSSSFVEESRQVLGGIRISIRYSLVAAGERPVAI
Ga0306920_1024324632	3300032261	Soil	MVEHPLDLIRFSGRVNYVDLVSSSFVEESLQGLGGVRISIRCSLVAAGERPVAI
Ga0335082_104684811	3300032782	Soil	VDLIRFGGRVDYVDLVSSSFVEESLQVLGGIRISIRCSLVAAGERPVAI
Ga0335079_104268761	3300032783	Soil	MDLIRFGGRVDYVELVSSSFVEESLQVLGGIRISIRCSRVAAGEHLVAI
Ga0335084_112609421	3300033004	Soil	VDLIRFGGRVDYVDFVSSSFIEESLQVLGGVRISIRCSLVAAGERPVAI
Ga0310810_101219713	3300033412	Soil	LAARSALDLIRFGGRVDYVDLVSSSFVEESLQVLGGVRVSIRGSLVAAGERPVAI
Ga0310810_103079811	3300033412	Soil	VNLIRFGGRVDYDDPVSSSFVEESLQGLGGGGISSRRSRVDAGERPVAI
Ga0310810_103497801	3300033412	Soil	MVGERRSRGIRRSLDVIRFGGRVDYVDLVSSFFVEESLQGLGGIRISSRCSVVAAGERPVAI
Ga0310811_101142707	3300033475	Soil	VGRDGRSLDLIRFGGRVDYVDLVSSSFVEESLQVLGGIGISSRGSRAAAGERPVAI
Ga0310811_104235804	3300033475	Soil	LDLIRFGGRVDYVDLVSSSFVEESLQVLGGVRVSIRGSLVAAGERPVAI
Ga0310811_104354021	3300033475	Soil	DGGPHHTDRKYTVDVIRFGGRVDYVDLVSSFFVEESLQGLGGIRISSRCSVVAAGERPVA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093452

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences