Metagenome / Metatranscriptome Family F093434

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093434
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	52 residues
Representative Sequence	AQDLGHLVPEARAKVLCGNAARLYNDGQLPPPADPPGNVKDLEAWNKVHWHE
Number of Associated Samples	84
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.89 %
% of genes near scaffold ends (potentially truncated)	98.11 %
% of genes from short scaffolds (< 2000 bps)	97.17 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.019 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (17.924 % of family members)
Environment Ontology (ENVO)	Unclassified (28.302 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.057 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.25% β-sheet: 0.00% Coil/Unstructured: 63.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF10282	Lactonase	17.92
PF00903	Glyoxalase	4.72
PF00528	BPD_transp_1	4.72
PF00005	ABC_tran	2.83
PF04909	Amidohydro_2	2.83
PF08241	Methyltransf_11	2.83
PF02894	GFO_IDH_MocA_C	2.83
PF12681	Glyoxalase_2	1.89
PF13649	Methyltransf_25	1.89
PF03683	UPF0175	0.94
PF12697	Abhydrolase_6	0.94
PF07726	AAA_3	0.94
PF00296	Bac_luciferase	0.94
PF07969	Amidohydro_3	0.94
PF13401	AAA_22	0.94
PF02900	LigB	0.94
PF00596	Aldolase_II	0.94
PF13612	DDE_Tnp_1_3	0.94
PF00856	SET	0.94
PF00496	SBP_bac_5	0.94
PF13561	adh_short_C2	0.94
PF13458	Peripla_BP_6	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0673	Predicted dehydrogenase	General function prediction only [R]	2.83
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.94
COG2886	Predicted antitoxin, contains HTH domain	General function prediction only [R]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.02 %
Unclassified	root	N/A	16.98 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.02 %
Unclassified	root	N/A	16.98 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.02 %
Unclassified	root	N/A	16.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.49 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	2.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.89 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.98 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.83 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.94 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.94 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.98 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.89 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.94 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	0.94 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.94 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.98 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	2.83 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1.89 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	1.89 %
Isosphaerales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales	0.94 %
Lichenibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae	0.94 %
unclassified Anaerolineae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae	0.94 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.94 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.98 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.83 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.89 %
Gluconacetobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Gluconacetobacter	1.89 %
Lichenibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	0.94 %
Isosphaeraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae	0.94 %
Anaerolineae bacterium SG8_19	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium SG8_19	0.94 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.94 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.98 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.83 %
Gluconacetobacter tumulisoli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Gluconacetobacter → Gluconacetobacter tumulisoli	1.89 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.89 %
Lichenibacterium ramalinae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium → Lichenibacterium ramalinae	0.94 %
Paludisphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Paludisphaera	0.94 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	0.94 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.94 %
Anaerolineae bacterium SG8_19	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium SG8_19	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.98 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.83 %
Gluconacetobacter tumulisoli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Gluconacetobacter → Gluconacetobacter tumulisoli	1.89 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.89 %
Paludisphaera borealis	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Paludisphaera → Paludisphaera borealis	0.94 %
Frankia inefficax	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia inefficax	0.94 %
Lichenibacterium ramalinae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium → Lichenibacterium ramalinae	0.94 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	0.94 %
Anaerolineae bacterium SG8_19	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium SG8_19	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_12853485	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300003203\|JGI25406J46586_10208256	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300004479\|Ga0062595_101432683	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300004633\|Ga0066395_10244221	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300005174\|Ga0066680_10228443	All Organisms → cellular organisms → Bacteria	1179	Open in IMG/M
3300005332\|Ga0066388_100741253	All Organisms → cellular organisms → Bacteria	1583	Open in IMG/M
3300005332\|Ga0066388_103821488	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300005332\|Ga0066388_105831221	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300005332\|Ga0066388_106739892	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300005353\|Ga0070669_100754841	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300005445\|Ga0070708_101074661	Not Available	754	Open in IMG/M
3300005446\|Ga0066686_10126163	All Organisms → cellular organisms → Bacteria	1673	Open in IMG/M
3300005543\|Ga0070672_101037488	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300005555\|Ga0066692_11039407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia inefficax	501	Open in IMG/M
3300005558\|Ga0066698_10262401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1193	Open in IMG/M
3300005558\|Ga0066698_10911998	All Organisms → cellular organisms → Bacteria → Proteobacteria	562	Open in IMG/M
3300005569\|Ga0066705_10111050	All Organisms → cellular organisms → Bacteria	1642	Open in IMG/M
3300005587\|Ga0066654_10820983	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300005713\|Ga0066905_100278192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Gluconacetobacter → Gluconacetobacter tumulisoli	1302	Open in IMG/M
3300005764\|Ga0066903_101379959	All Organisms → cellular organisms → Bacteria	1322	Open in IMG/M
3300005764\|Ga0066903_103395028	Not Available	859	Open in IMG/M
3300005764\|Ga0066903_106529775	All Organisms → cellular organisms → Bacteria → Proteobacteria	608	Open in IMG/M
3300005886\|Ga0075286_1066554	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300005985\|Ga0081539_10309291	Not Available	676	Open in IMG/M
3300006049\|Ga0075417_10127630	All Organisms → cellular organisms → Bacteria	1171	Open in IMG/M
3300006049\|Ga0075417_10275882	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300006847\|Ga0075431_100169903	All Organisms → cellular organisms → Bacteria	2241	Open in IMG/M
3300006853\|Ga0075420_100880974	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300006854\|Ga0075425_101221265	Not Available	854	Open in IMG/M
3300007255\|Ga0099791_10310020	Not Available	753	Open in IMG/M
3300009012\|Ga0066710_103871939	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	561	Open in IMG/M
3300009089\|Ga0099828_10725156	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	892	Open in IMG/M
3300009089\|Ga0099828_10928445	Not Available	777	Open in IMG/M
3300009094\|Ga0111539_12195733	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	640	Open in IMG/M
3300009156\|Ga0111538_10888216	All Organisms → cellular organisms → Bacteria	1128	Open in IMG/M
3300009444\|Ga0114945_10165282	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1274	Open in IMG/M
3300009803\|Ga0105065_1018165	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300009804\|Ga0105063_1009006	All Organisms → cellular organisms → Bacteria	1029	Open in IMG/M
3300010043\|Ga0126380_10650086	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300010046\|Ga0126384_11396648	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300010046\|Ga0126384_11411591	Not Available	649	Open in IMG/M
3300010046\|Ga0126384_12077236	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300010047\|Ga0126382_10366551	Not Available	1110	Open in IMG/M
3300010047\|Ga0126382_12021232	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300010145\|Ga0126321_1005432	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300010329\|Ga0134111_10195794	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300010359\|Ga0126376_10611094	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300010360\|Ga0126372_10477207	Not Available	1164	Open in IMG/M
3300010360\|Ga0126372_11804341	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	655	Open in IMG/M
3300010362\|Ga0126377_11578083	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300010362\|Ga0126377_11814133	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300010362\|Ga0126377_11829279	Not Available	683	Open in IMG/M
3300010362\|Ga0126377_12487748	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300010366\|Ga0126379_10990104	Not Available	945	Open in IMG/M
3300010366\|Ga0126379_11386196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium → Lichenibacterium ramalinae	809	Open in IMG/M
3300010398\|Ga0126383_11027378	Not Available	913	Open in IMG/M
3300010398\|Ga0126383_12567960	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300010400\|Ga0134122_10224256	All Organisms → cellular organisms → Bacteria	1572	Open in IMG/M
3300012199\|Ga0137383_11000268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Gluconacetobacter → Gluconacetobacter tumulisoli	609	Open in IMG/M
3300012202\|Ga0137363_11500288	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300012204\|Ga0137374_10773465	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300012206\|Ga0137380_10603044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium SG8_19	960	Open in IMG/M
3300012210\|Ga0137378_11330230	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300012360\|Ga0137375_10896924	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300012363\|Ga0137390_10394439	All Organisms → cellular organisms → Bacteria	1363	Open in IMG/M
3300012922\|Ga0137394_10357529	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300012930\|Ga0137407_10060960	All Organisms → cellular organisms → Bacteria	3103	Open in IMG/M
3300012944\|Ga0137410_11818489	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300012948\|Ga0126375_11833394	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300012971\|Ga0126369_11769637	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300013306\|Ga0163162_10307539	Not Available	1717	Open in IMG/M
3300013306\|Ga0163162_11194202	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300014255\|Ga0075320_1138654	All Organisms → cellular organisms → Bacteria → Proteobacteria	507	Open in IMG/M
3300015359\|Ga0134085_10193928	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300015372\|Ga0132256_103207520	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300016371\|Ga0182034_11776289	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300016422\|Ga0182039_11686130	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300017656\|Ga0134112_10065105	All Organisms → cellular organisms → Bacteria	1339	Open in IMG/M
3300017656\|Ga0134112_10295185	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300017659\|Ga0134083_10160149	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300017659\|Ga0134083_10553245	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300018053\|Ga0184626_10093722	All Organisms → cellular organisms → Bacteria	1271	Open in IMG/M
3300018056\|Ga0184623_10141258	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300018082\|Ga0184639_10231672	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Paludisphaera → Paludisphaera borealis	978	Open in IMG/M
3300018082\|Ga0184639_10573188	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300018433\|Ga0066667_10788364	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300019458\|Ga0187892_10304305	Not Available	793	Open in IMG/M
3300021073\|Ga0210378_10038309	All Organisms → cellular organisms → Bacteria	1903	Open in IMG/M
3300022195\|Ga0222625_1216494	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300025923\|Ga0207681_11254805	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300026297\|Ga0209237_1215625	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300027873\|Ga0209814_10087605	All Organisms → cellular organisms → Bacteria	1315	Open in IMG/M
3300027880\|Ga0209481_10276768	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300027882\|Ga0209590_10052484	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2279	Open in IMG/M
3300027882\|Ga0209590_10574166	Not Available	726	Open in IMG/M
3300028587\|Ga0247828_10433390	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300031094\|Ga0308199_1071982	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300031098\|Ga0308191_1007667	Not Available	924	Open in IMG/M
3300031114\|Ga0308187_10274116	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300031819\|Ga0318568_10457664	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300031820\|Ga0307473_11063032	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300031945\|Ga0310913_10358408	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300032059\|Ga0318533_10629418	Not Available	787	Open in IMG/M
3300032076\|Ga0306924_12191700	Not Available	564	Open in IMG/M
3300032180\|Ga0307471_101634498	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300034663\|Ga0314784_003731	All Organisms → cellular organisms → Bacteria	1817	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.96%
Host-Associated	Host-Associated	16.04%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.42%
Plants	Host-Associated → Plants	16.04%
Aquatic	Environmental → Aquatic	7.55%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.47%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.26%
Sediment	Environmental → Aquatic → Sediment	3.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.77%
Freshwater	Environmental → Aquatic → Freshwater	2.83%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.94%
Cave	Environmental → Terrestrial → Cave	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.26%
Loam	Environmental → Terrestrial → Soil → Loam	9.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.49%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.77%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.89%
Sand	Environmental → Terrestrial → Soil → Sand	1.89%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.94%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.94%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.51%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.38%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.49%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.49%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.77%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.89%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.89%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.94%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	17.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.15%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.49%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.55%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.66%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.83%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.89%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.89%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.89%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.94%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.94%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005886	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_205	Environmental	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009444	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3	Environmental	Open in IMG/M
3300009803	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_40_50	Environmental	Open in IMG/M
3300009804	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014255	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleC_D2	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031098	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_186 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034663	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_128534851	3300000789	Soil	PHSACIWPGASRFIAQDLGHLVPEARAKVLCRNAARLYNDDQLPPPADPPGDVNDLEAWNKVHWHE*
JGI25406J46586_102082561	3300003203	Tabebuia Heterophylla Rhizosphere	AQDLGHLTPEARAKVLCGNAARLYNDGQLPPPPDPAGEVKDLEAWNAVHWGE*
Ga0062595_1014326831	3300004479	Soil	AKVLCGNAARLYNDGELPPPADPPGNVNDLEAWNKVHWHA*
Ga0066395_102442212	3300004633	Tropical Forest Soil	IAQDLGHLTPEARAKVLSTNAARLYNDGQLPPPADPPRGVSDLEAWNKVHWHE*
Ga0066680_102284431	3300005174	Soil	ATRFIAQDLGHLTSAARTKVLCTNAARLYNNGQLPPPADPPRGVSDLEAWNKIHWH*
Ga0066388_1007412531	3300005332	Tropical Forest Soil	TRFIAQDLGHLTSEARAKVLCGNAARLYNDSQLPPPPDPVGEVKDLEAWNKAHWSE*
Ga0066388_1038214882	3300005332	Tropical Forest Soil	SACIWPGATRFIAQDLGHLTPEARAKVLCGNAARLYNDGELPPPADPPGNVNDLEAWNKVHWHAQAH*
Ga0066388_1058312212	3300005332	Tropical Forest Soil	ATRFIAQDLGHLTPEARARVLCGNAVRLYNDGQLPPPPDPAGEVKDLEAWNKVHWGE*
Ga0066388_1067398921	3300005332	Tropical Forest Soil	FIAQDLGHLTPEDRAKVLWQNAARLYNDGQLPPPPEPVEAVKDLEAWNKVHWSE*
Ga0070669_1007548411	3300005353	Switchgrass Rhizosphere	AQDLGHLTPEARAKVLCGNAARLYNDGELPPPADPPGNVNDLEAWNKVHWHA*
Ga0070708_1010746612	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	PEDRAKVLCGNAARLYNDGQLPPPADPPGEVRDLEAWNAVHWHE*
Ga0066686_101261633	3300005446	Soil	HLTPEARAKVLCGNAARLYNDGELPPPADPPGNVNDLEAWNKVHWHA*
Ga0070672_1010374882	3300005543	Miscanthus Rhizosphere	ATRFIAQDLGHLTPEARAKVLCGNAARLYNDGELPPPADPPGNVNDLEAWNKVHWHA*
Ga0066692_110394071	3300005555	Soil	PHSACIWPGATQFIAQDLGHLMPEARAKVLCGNAARLYNDGQLPPPPDPAGEVKELEAWNTVHWGE*
Ga0066698_102624013	3300005558	Soil	TRFIAQDLGHLTSAARTKVLCTNAARLYNNGQLPPPADPPRGVSDLEAWNKIHWH*
Ga0066698_109119981	3300005558	Soil	RAKVLCGNAARLYNDGQLPSPADPPGDVKDLEAWDKVHWHA*
Ga0066705_101110501	3300005569	Soil	CGNAARLYNDGELPPPADPPGNVNDLEAWNKVHWHA*
Ga0066654_108209832	3300005587	Soil	GATRFIAQDLGHLTPEARAKVLCGNAARLYNDGELPPPADPPGNVNDLEAWSKVHWHA*
Ga0066905_1002781921	3300005713	Tropical Forest Soil	RAKVLCGNAARLYNDGQLPPPADSPGEVRELEAWNQVHWHE*
Ga0066903_1013799591	3300005764	Tropical Forest Soil	IWPGATRFIAQDLGHLTPEARAKVLCGNAARLYNDGELPPPADPPGNVSDLEAWNKVHWHA*
Ga0066903_1033950282	3300005764	Tropical Forest Soil	GNAARLYNDGQLPPPPDPAGEVKDLEAWNTVHWGE*
Ga0066903_1065297752	3300005764	Tropical Forest Soil	FIAQDLGHLTPEARAKVLCGNAARLYNDGQLPPPPDPAGEVKDLEAWNTVHWGE*
Ga0075286_10665542	3300005886	Rice Paddy Soil	PQATPFIAQDLGHLTPEDRAKVLWQNAARLYNDGQLPPPPDPVEAVKDLEAWNKVHWSE*
Ga0081539_103092911	3300005985	Tabebuia Heterophylla Rhizosphere	KVLSLNAARLYNDGQLPPPAAPPGEVQELEAWNQVHWGE*
Ga0075417_101276301	3300006049	Populus Rhizosphere	LGHLTPEARAKILCGNAAQLYNDGQLPPPPDPAGEVKDLEAWNTAHWSE*
Ga0075417_102758821	3300006049	Populus Rhizosphere	IWPGATRFIAQDLGHLTPEARTRVLCGNAVRLYNDGQLPPPPEPAGEVKALEAWNKVHWGE*
Ga0075431_1001699031	3300006847	Populus Rhizosphere	LTPEARAKILCGNAARLYNDGQLPPHPDPAGEVKDLEAWNAVHWGE*
Ga0075420_1008809742	3300006853	Populus Rhizosphere	HGACIWPQATPFIAQDLGHLTPEDRAKVLWQNAARLYNDGQLPPPPDPVEAVKDLEAWNKVHWSE*
Ga0075425_1012212651	3300006854	Populus Rhizosphere	TRFIAQDLGHLTPEARARVLCGNAVRLYNDGQLPPPPDPAGEVKDLEAWNKVHWGE*
Ga0099791_103100202	3300007255	Vadose Zone Soil	EARAKVLCGNAARLYNDGQLPPPPDPAGEVKDLEAWNTVHWGE*
Ga0066710_1038719392	3300009012	Grasslands Soil	FIAEDLGHRGPEARAKGLCGTAARLYNEGQLPPPADSPGDVKDLEAWNEVHWHG
Ga0099828_107251562	3300009089	Vadose Zone Soil	GHLVPEARAKVLCGNAARLYNDGQLPPPADPPGDVRDLEAWNQVHWHE*
Ga0099828_109284451	3300009089	Vadose Zone Soil	HSACIWPGATRFIAQDLGHLVPEARAKVLSGNAARLYNDGQLPPPADPPGDVKDLEAWNKVHWRE*
Ga0111539_121957331	3300009094	Populus Rhizosphere	KVLCGNAARLYNDGELPPPADPPGNVNDLEAWNKVHWHA*
Ga0111538_108882162	3300009156	Populus Rhizosphere	NAARLYNDGELPPPADPPGNVNDLEAWNKVHWHA*
Ga0114945_101652821	3300009444	Thermal Springs	PEARAKVLWENAAHLYNDGQLPPPPDPVGAVKDLEAWNKVHWSE*
Ga0105065_10181652	3300009803	Groundwater Sand	AQDLGHLVPEARAKVLCGNAARLYNDGQLPPPADPPGNVKDLEAWNKVHWHE*
Ga0105063_10090062	3300009804	Groundwater Sand	CGNAARLYNDGQLPPPADPPGNVKDLEAWNKVHWHE*
Ga0126380_106500861	3300010043	Tropical Forest Soil	HLAPAARIKVLCTNAARLYNGGQLPPPADPPRGVSDLDAWNKVHWHE*
Ga0126384_113966482	3300010046	Tropical Forest Soil	ATRFIAQDLGHLTPDARAKVLCGNAARLYNDGELPPPVDPPGNVNDLEAWNKVHWHAQAH
Ga0126384_114115912	3300010046	Tropical Forest Soil	YPHSACIWPGATRFIAQDLGHLTSEARAKVLYGNAVRLYNDGQLPPLPDPAGEVKDLEAWNKVHWSE*
Ga0126384_120772362	3300010046	Tropical Forest Soil	CIWPGATRFIAQDLGHLTPEARAKVLCGNAARLYNGGELPPPADPPGNMNDLEEWNKVHWDA*
Ga0126382_103665511	3300010047	Tropical Forest Soil	CIWPGATAFIAQDLGHLTPEDRAKVLCGNAARLYNDGQLPPPADPPGEVRDLEAWNQAHWHE*
Ga0126382_120212321	3300010047	Tropical Forest Soil	ERRAKVLCGNAARLYNAGELPPPADPPGEVRDLEAWNKVHWHE*
Ga0126321_10054322	3300010145	Soil	CIWPQATSFIAQDLGHLTPEARAKVLAGNAARLYNDGQLPPPPEPVEAVKDLEAWNKVHWSE*
Ga0134111_101957942	3300010329	Grasslands Soil	QDLGHLTPEARAKVLSGNAARLYNDGQLPPPPDPVEAVKDLEAWNKVHWHE*
Ga0126376_106110941	3300010359	Tropical Forest Soil	GASRFIAQDLGHLVPEARAKVLSRNAARLYNDDQLPPPADPPGDVNDLEAWNKVHWHE*
Ga0126372_104772071	3300010360	Tropical Forest Soil	DLGHLAPEARAKVLYGNAARLYNDGQLPPPPDPAGEVKDLEAWNTVHWGE*
Ga0126372_118043412	3300010360	Tropical Forest Soil	GACIWPQATPFIAQDLGHLTPEDRAKVLWQNAARLYNDGQLPPPPEPVEAVKDLEAWNKVHWSE*
Ga0126377_115780832	3300010362	Tropical Forest Soil	LCTNAARLYNGGQLPPPADPPRGVSDLDAWNKVHWHE*
Ga0126377_118141331	3300010362	Tropical Forest Soil	PAARAKVLCANAARLYNHGQLPPPADPPGEVNDLEAWNKVHWHE*
Ga0126377_118292791	3300010362	Tropical Forest Soil	YPHSACIWPGTTRFIAQDLEHLTPEARAKVLWKNAVRLYNDGQLPPPPDPVGEVKDLEAWNKVHWGE*
Ga0126377_124877481	3300010362	Tropical Forest Soil	PEARAKVLCGNAARLYNDGELPPPADPPGHVNDLEAWNKVHWHAQAH*
Ga0126379_109901042	3300010366	Tropical Forest Soil	IWPGATRFIAQDLGHLTPEARAKVLCGNAVRLYNDGQLPPPPEPAGEVKDLEAWNKVHWSE*
Ga0126379_113861962	3300010366	Tropical Forest Soil	LSTNAARLYNDGQLPPPADPPRGVSNLEAWNKVHWHE*
Ga0126383_110273781	3300010398	Tropical Forest Soil	ARAKVLCGNAARLYNDGQLPPPPEPAGEVKDLEAWNKVHWSE*
Ga0126383_125679601	3300010398	Tropical Forest Soil	PEARARVLCGNAVRLYNDGQLPPSPEPSGEVKELEAWNKVHWGE*
Ga0134122_102242561	3300010400	Terrestrial Soil	PHSACIWPGATRFIAQDLGHLTPEARAKVLCGNAARLYNDGELPPPADPPGNVNDLEAWNKVHWHA*
Ga0137383_110002682	3300012199	Vadose Zone Soil	AKVLCGNAARLYNDGQLPPPADPPGEVRDLEAWNEVHWHE*
Ga0137363_115002881	3300012202	Vadose Zone Soil	HSACIWPGATQFIAEDLRHLLPEARAKVLCGNAARLYNDGQLPPPPDPAGEVKDLEAWNTVHWGE*
Ga0137374_107734651	3300012204	Vadose Zone Soil	AQDLGHLTPEARARVLCRNAVRLYNDGHLPPPADPPGEVKDLEAWNKVHWHE*
Ga0137380_106030442	3300012206	Vadose Zone Soil	CIWPQATSFIVQDLGHLTPEARAKVLSGNAARLYNDGQLPPPPDPVEAVKDLEAWNKVHWSE*
Ga0137378_113302301	3300012210	Vadose Zone Soil	HLTPEARAKVLCGNAARLYNDGELPPPADPPGSVNDLEAWNKVHWHV*
Ga0137375_108969241	3300012360	Vadose Zone Soil	RFIAQDLGHLTPEARARVLCRNAVRLYNDGHLPPPADPPGEVKDLEAWNKVHWHE*
Ga0137390_103944391	3300012363	Vadose Zone Soil	QFIAQDLGHLMPEARAKVLCGNAARLYNDGQLPPPPDPAGEVKDLEAWNKVHWGE*
Ga0137394_103575293	3300012922	Vadose Zone Soil	PETRARVLCGNAVRLYNDGHLPPPADSPGEVKDLEAWNKVHWHE*
Ga0137407_100609601	3300012930	Vadose Zone Soil	TPEARARVLCGNAVRLYNDGHLPPPADPPGEVKDLEAWNKVHWHE*
Ga0137410_118184891	3300012944	Vadose Zone Soil	RAKVLCGNAARLYNDGELPADPPGNVNDLEAWNKVHWHA*
Ga0126375_118333941	3300012948	Tropical Forest Soil	RFIAQDLGHLTPEARARVLWGNAVRLYNDGQLPPLPEPAGEVKDLEAWNKVHWGE*
Ga0126369_117696372	3300012971	Tropical Forest Soil	ACIWPGATRFIAQDLGHLTPEARAKVLSTNAARLYNDGRLPPPADPPRGVSNLEAWNKVHWHE*
Ga0163162_103075391	3300013306	Switchgrass Rhizosphere	VVQRLPAQCLHLAGATRFIAQDLGHLTPEARAKVLCGNAARLYNAGQLPPLPDPVEDVKDLEAWNKVHWGE*
Ga0163162_111942021	3300013306	Switchgrass Rhizosphere	TPEARAKVLCGNAARLYNDGELPPPADPPGNVNDLEAWNKVHWHA*
Ga0075320_11386542	3300014255	Natural And Restored Wetlands	QDLGHLTPEARAKVLSGNAARLYNDGQLPPPPDPVEAVQDLEAWNKVHWSE*
Ga0134085_101939281	3300015359	Grasslands Soil	AARTKVLCTNAARLYNNGQLPPPADPPRGVSDLEAWNKIHWH*
Ga0132256_1032075202	3300015372	Arabidopsis Rhizosphere	DYPHSACIWPGATQFIAQDLGHLVPEARAKVLCGNAAQLYNDGQLPPPPDPAGEVKDLEAWNAIHWGE*
Ga0182034_117762891	3300016371	Soil	PHGACIWPQATAFIAQDLGHLTPEARAKVLAGNAARLYNDGQLPPPPDPVEAVKDLEAWNKVHWSE
Ga0182039_116861301	3300016422	Soil	ATRFIAQDLGHLTPEARAKVLCGNAARLYNDGELPPPADPPGNVNDLEAWNKVHWHAQAH
Ga0134112_100651052	3300017656	Grasslands Soil	KVLCGNAARLYNDGQLPPPADPPGDVKDLEAWNKVHWHE
Ga0134112_102951851	3300017656	Grasslands Soil	HLTPEARAKVLCGNAARLYNDGELPPPADPPGNVNDLEAWNKVHWHA
Ga0134083_101601492	3300017659	Grasslands Soil	PHSACIWPGATRFIAQDLGHLMPEARAKVLCGNAARLYNDGQLPPPADPPGDVKDLEAWNKVHWHE
Ga0134083_105532451	3300017659	Grasslands Soil	KVLCGNAARLYNDGQLPPLADPPGDVKDLEAWAKVHWHA
Ga0184626_100937221	3300018053	Groundwater Sediment	QDLGHLMPEARAKVLCGNAARLYNDGQLPPLPDPAGDVRDLEAWNTVHWGE
Ga0184623_101412582	3300018056	Groundwater Sediment	LGHLVPEARAKVLCGNAARLYNDGQLPPPADPPGDVKALEAWNKVHWHE
Ga0184639_102316721	3300018082	Groundwater Sediment	LMPESRAKILCGNAARLYNDGQLPPPADPPGEVRDLEAWNKAHWHE
Ga0184639_105731881	3300018082	Groundwater Sediment	LGHLTPEDRAKVLCGNAARLYNDGQLPPPADPPGEVQDLEAWNNVHWHE
Ga0066667_107883642	3300018433	Grasslands Soil	GHLTPEARAKVLCGNAARLYNDGELPPPADPPGNVNDLEAWNKVHWHA
Ga0187892_103043051	3300019458	Bio-Ooze	EARAKVLCGNAARLYNDGQLPPPPDPAGEVKDLEAWNTVHWGE
Ga0210378_100383091	3300021073	Groundwater Sediment	FIARDLGHLVPEARAKVLCGNAARLYNDGQLPPPADPPGDVKDLEAWNKVHWHE
Ga0222625_12164943	3300022195	Groundwater Sediment	ATQFIAQDLDHLMPEARAKVLCGNAARLYNDGQLPPPPDPAGEVKDLEAWNKVHWGE
Ga0207681_112548052	3300025923	Switchgrass Rhizosphere	TRFIAQDLGHLTPEARAKVLCGNAARLYNDGELPPPADPPGNVNDLEAWNKVHWHA
Ga0209237_12156251	3300026297	Grasslands Soil	CGNAARLYNDGQLPPPADPPGDVKDLEAWNNVHWHE
Ga0209814_100876052	3300027873	Populus Rhizosphere	LGHLTPEARAKILCGNAAQLYNDGQLPPPPDPAGEVKDLEAWNTAHWSE
Ga0209481_102767682	3300027880	Populus Rhizosphere	EARAKVLCGNAARLYNDGELPPPADPPGNVNDLEAWNKVHWHA
Ga0209590_100524843	3300027882	Vadose Zone Soil	MRLDILAIRARAKVLSGNAARLYNDGQLPPPPDPVEAVKDLEAWNKVHWSE
Ga0209590_105741662	3300027882	Vadose Zone Soil	ACIWPGATQCIAQDLGHLMPEARAKVLCGNAARLYNDGQLPPPPDPAGEVKDLEAWNTVHWGE
Ga0247828_104333902	3300028587	Soil	DLGHLTPEDRAKVLWQNAARLYNDGQLPPPPDPVEAVKDVEAWNKVHWSE
Ga0308199_10719823	3300031094	Soil	HLTPEARAKVLSGNAARLYNNGQLPPPPDPVEAVKDLEAWNKVHWSE
Ga0308191_10076671	3300031098	Soil	DYPHSACIWPGAAQFIAQDLRHLMPEARAKVLCGNAARLYNDGQLPPPPDPAGEVKDLEAWNTVHWGE
Ga0308187_102741161	3300031114	Soil	DYPHSACIWPGATQFIAQDLRHLMPEARAKVLCGNAARLYNDGQLPPPPDPAGDVKDLEAWNTVHWGE
Ga0318568_104576642	3300031819	Soil	LGHLTPEARAKVLCGNAARLYNDGELPPPADPPGNVNDLEAWNKVHWHAQAH
Ga0307473_110630322	3300031820	Hardwood Forest Soil	LTPEARAKVLCGNAARLYNDGELPPPADPPGNVNDLEAWNKVHWHA
Ga0310913_103584081	3300031945	Soil	AQDLGHLTPEARAKVLCGNAARLYNDGELPPPADPPGNVNDLEAWNKVHWHAQAH
Ga0318533_106294182	3300032059	Soil	PEARAKVLCGNAVRLYNDGQLPPPPDPGGEVKDLEAWNKVHWGE
Ga0306924_121917002	3300032076	Soil	YPHSACIWPGATRFIAQDLGHLAPEARAKVLYGNAARLYNDGQLPPPPDPAGEVKDLEAWNTVHWGE
Ga0307471_1016344982	3300032180	Hardwood Forest Soil	AKVLWQNAARLYNDGQLPPPPDPVEAVKDVEAWNKVHWSE
Ga0314784_003731_1677_1817	3300034663	Soil	LTPEARAKVLCGNAVRLYNDGQLPPPPDPVGAVKDLEAWNKVHWGE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093434

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences