Metagenome / Metatranscriptome Family F093398

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093398
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	80 residues
Representative Sequence	MQRIFERPKVVYVVLVVAIVGFFALSAVGNTGTDAQNKASGVTWIGNIGWAMFLISILATILYTVALVVRTIMRRRRGAAA
Number of Associated Samples	66
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	68.87 %
% of genes near scaffold ends (potentially truncated)	26.42 %
% of genes from short scaffolds (< 2000 bps)	89.62 %
Associated GOLD sequencing projects	56
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (51.887 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (19.811 % of family members)
Environment Ontology (ENVO)	Unclassified (47.170 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (66.038 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 63.30% β-sheet: 0.00% Coil/Unstructured: 36.70%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
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SCOP family	SCOP domain	Representative PDB	TM-score
a.238.1.3: IMD domain	d1y2oa1	1y2o	0.72852
c.49.2.1: ATP synthase (F1-ATPase), gamma subunit	d2jdig_	2jdi	0.72106
a.278.1.1: PSF1 N-terminal domain-like	d2q9qc_	2q9q	0.7147
f.37.1.0: automated matches	d4q4hb1	4q4h	0.70976
a.87.1.1: DBL homology domain (DH-domain)	d1ki1b1	1ki1	0.70668

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF13847	Methyltransf_31	16.98
PF07366	SnoaL	15.09
PF00196	GerE	11.32
PF03551	PadR	11.32
PF02585	PIG-L	3.77
PF04024	PspC	3.77
PF00890	FAD_binding_2	1.89
PF02518	HATPase_c	1.89
PF05175	MTS	0.94
PF01596	Methyltransf_3	0.94
PF12681	Glyoxalase_2	0.94
PF13673	Acetyltransf_10	0.94
PF13238	AAA_18	0.94
PF02353	CMAS	0.94
PF01548	DEDD_Tnp_IS110	0.94
PF01135	PCMT	0.94
PF12847	Methyltransf_18	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	11.32
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	11.32
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	11.32
COG2120	N-acetylglucosaminyl deacetylase, LmbE family	Carbohydrate transport and metabolism [G]	3.77
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	1.89
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	1.89
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	1.89
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	0.94
COG2230	Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases	Lipid transport and metabolism [I]	0.94
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	0.94
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.94
COG4123	tRNA1(Val) A37 N6-methylase TrmN6	Translation, ribosomal structure and biogenesis [J]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.89 %
All Organisms	root	All Organisms	48.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.89 %
cellular organisms	root	All Organisms → cellular organisms	48.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.89 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.89 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	37.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.89 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	33.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.89 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	19.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.89 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.89 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.94 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.94 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.94 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.89 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.89 %
Actinopolymorphaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae	0.94 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.94 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.94 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.89 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.89 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	0.94 %
Rathayibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Rathayibacter	0.94 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.94 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.89 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.89 %
Mycobacterium tuberculosis complex	species group	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex	0.94 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	0.94 %
Rathayibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Rathayibacter	0.94 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.89 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.89 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	0.94 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	0.94 %
Rathayibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Rathayibacter	0.94 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001305\|C688J14111_10086391	Not Available	953	Open in IMG/M
3300002568\|C688J35102_118529995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Rathayibacter	568	Open in IMG/M
3300002568\|C688J35102_118847068	Not Available	604	Open in IMG/M
3300002568\|C688J35102_119609196	Not Available	731	Open in IMG/M
3300002568\|C688J35102_119891586	Not Available	805	Open in IMG/M
3300002568\|C688J35102_120038427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	855	Open in IMG/M
3300002568\|C688J35102_120699071	Not Available	1375	Open in IMG/M
3300002568\|C688J35102_120975473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4132	Open in IMG/M
3300003321\|soilH1_10268588	All Organisms → cellular organisms → Bacteria	1350	Open in IMG/M
3300003324\|soilH2_10078303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1723	Open in IMG/M
3300004081\|Ga0063454_100618483	All Organisms → cellular organisms → Bacteria → Terrabacteria group	796	Open in IMG/M
3300004081\|Ga0063454_100634095	Not Available	789	Open in IMG/M
3300005093\|Ga0062594_102241049	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300005093\|Ga0062594_102634690	Not Available	555	Open in IMG/M
3300005167\|Ga0066672_10225570	All Organisms → cellular organisms → Bacteria	1200	Open in IMG/M
3300005184\|Ga0066671_10646251	Not Available	687	Open in IMG/M
3300005186\|Ga0066676_11073013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	532	Open in IMG/M
3300005327\|Ga0070658_10000980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	24525	Open in IMG/M
3300005327\|Ga0070658_10187952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1740	Open in IMG/M
3300005327\|Ga0070658_10544377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1004	Open in IMG/M
3300005327\|Ga0070658_10768707	Not Available	837	Open in IMG/M
3300005327\|Ga0070658_11362682	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300005327\|Ga0070658_11751428	Not Available	538	Open in IMG/M
3300005327\|Ga0070658_11895012	Not Available	515	Open in IMG/M
3300005329\|Ga0070683_100193301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1932	Open in IMG/M
3300005335\|Ga0070666_11198231	Not Available	566	Open in IMG/M
3300005336\|Ga0070680_100087903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2570	Open in IMG/M
3300005336\|Ga0070680_100322785	Not Available	1311	Open in IMG/M
3300005336\|Ga0070680_100835955	Not Available	794	Open in IMG/M
3300005337\|Ga0070682_100586729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	878	Open in IMG/M
3300005339\|Ga0070660_100123212	Not Available	2070	Open in IMG/M
3300005339\|Ga0070660_100300073	All Organisms → cellular organisms → Bacteria	1317	Open in IMG/M
3300005339\|Ga0070660_100987176	Not Available	711	Open in IMG/M
3300005339\|Ga0070660_101211471	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300005344\|Ga0070661_101930034	Not Available	502	Open in IMG/M
3300005356\|Ga0070674_100961189	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300005366\|Ga0070659_102055520	Not Available	513	Open in IMG/M
3300005435\|Ga0070714_100831934	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300005436\|Ga0070713_101432164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	670	Open in IMG/M
3300005530\|Ga0070679_100649258	Not Available	998	Open in IMG/M
3300005560\|Ga0066670_10103694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1597	Open in IMG/M
3300005563\|Ga0068855_101197196	Not Available	790	Open in IMG/M
3300005587\|Ga0066654_10097594	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1412	Open in IMG/M
3300005587\|Ga0066654_10119280	All Organisms → cellular organisms → Bacteria	1302	Open in IMG/M
3300005587\|Ga0066654_10198902	Not Available	1040	Open in IMG/M
3300006034\|Ga0066656_11138498	Not Available	502	Open in IMG/M
3300006881\|Ga0068865_100290373	All Organisms → cellular organisms → Bacteria	1305	Open in IMG/M
3300009093\|Ga0105240_10288408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1883	Open in IMG/M
3300009098\|Ga0105245_10153358	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2180	Open in IMG/M
3300009098\|Ga0105245_12588368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	561	Open in IMG/M
3300009137\|Ga0066709_104378746	Not Available	515	Open in IMG/M
3300009176\|Ga0105242_10166256	Not Available	1935	Open in IMG/M
3300009551\|Ga0105238_12695863	Not Available	533	Open in IMG/M
3300010335\|Ga0134063_10775768	Not Available	501	Open in IMG/M
3300012212\|Ga0150985_113609824	Not Available	767	Open in IMG/M
3300012212\|Ga0150985_115094062	All Organisms → cellular organisms → Bacteria → Terrabacteria group	754	Open in IMG/M
3300012469\|Ga0150984_114196964	Not Available	562	Open in IMG/M
3300012469\|Ga0150984_116611503	Not Available	630	Open in IMG/M
3300012469\|Ga0150984_123506553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	619	Open in IMG/M
3300012951\|Ga0164300_10522335	Not Available	684	Open in IMG/M
3300012961\|Ga0164302_11444084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	564	Open in IMG/M
3300013296\|Ga0157374_11205386	Not Available	778	Open in IMG/M
3300013297\|Ga0157378_11348578	Not Available	755	Open in IMG/M
3300013307\|Ga0157372_10384472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1635	Open in IMG/M
3300013307\|Ga0157372_12480584	Not Available	595	Open in IMG/M
3300013307\|Ga0157372_12501812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	593	Open in IMG/M
3300013307\|Ga0157372_13463176	Not Available	502	Open in IMG/M
3300015356\|Ga0134073_10112017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	820	Open in IMG/M
3300015371\|Ga0132258_12826216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1208	Open in IMG/M
3300017659\|Ga0134083_10381609	Not Available	612	Open in IMG/M
3300017659\|Ga0134083_10479705	Not Available	554	Open in IMG/M
3300018431\|Ga0066655_10413842	Not Available	889	Open in IMG/M
3300018468\|Ga0066662_10525722	Not Available	1085	Open in IMG/M
3300020069\|Ga0197907_10907682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1022	Open in IMG/M
3300020069\|Ga0197907_11292543	Not Available	696	Open in IMG/M
3300020070\|Ga0206356_11116857	Not Available	851	Open in IMG/M
3300020078\|Ga0206352_11141941	Not Available	516	Open in IMG/M
3300020080\|Ga0206350_10391146	Not Available	661	Open in IMG/M
3300020081\|Ga0206354_10091253	Not Available	686	Open in IMG/M
3300020081\|Ga0206354_10164378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1020	Open in IMG/M
3300020081\|Ga0206354_11022325	Not Available	815	Open in IMG/M
3300020082\|Ga0206353_11421305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3392	Open in IMG/M
3300020610\|Ga0154015_1026244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	729	Open in IMG/M
3300022467\|Ga0224712_10238693	Not Available	837	Open in IMG/M
3300025909\|Ga0207705_10000882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	24528	Open in IMG/M
3300025909\|Ga0207705_10055706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2851	Open in IMG/M
3300025909\|Ga0207705_11242385	Not Available	570	Open in IMG/M
3300025909\|Ga0207705_11423299	Not Available	526	Open in IMG/M
3300025909\|Ga0207705_11536979	Not Available	503	Open in IMG/M
3300025912\|Ga0207707_10091487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2659	Open in IMG/M
3300025912\|Ga0207707_10172957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1887	Open in IMG/M
3300025912\|Ga0207707_11442102	Not Available	548	Open in IMG/M
3300025917\|Ga0207660_10119043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	1998	Open in IMG/M
3300025919\|Ga0207657_10298944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1275	Open in IMG/M
3300025919\|Ga0207657_10865591	Not Available	697	Open in IMG/M
3300025927\|Ga0207687_10154544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1754	Open in IMG/M
3300025928\|Ga0207700_11892255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	523	Open in IMG/M
3300025929\|Ga0207664_10936332	Not Available	777	Open in IMG/M
3300025932\|Ga0207690_11613070	Not Available	542	Open in IMG/M
3300025934\|Ga0207686_10247557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1300	Open in IMG/M
3300026078\|Ga0207702_11629075	Not Available	639	Open in IMG/M
3300026317\|Ga0209154_1121569	Not Available	1104	Open in IMG/M
3300026527\|Ga0209059_1068938	All Organisms → cellular organisms → Bacteria	1522	Open in IMG/M
3300031938\|Ga0308175_100065882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3203	Open in IMG/M
3300031938\|Ga0308175_100066623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3188	Open in IMG/M
3300034268\|Ga0372943_1027771	Not Available	550	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.55%
Host-Associated	Host-Associated	42.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.55%
Plants	Host-Associated → Plants	42.45%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	36.79%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.66%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	24.53%
Loam	Environmental → Terrestrial → Soil → Loam	22.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.83%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	24.53%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.04%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.21%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.26%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	9.43%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.94%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	19.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	10.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.43%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	9.43%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	9.43%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.89%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020610	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J14111_100863912	3300001305	Soil	MRKIFERPKVTYVVLVVAIVGFFALSAVGNNGTDAENAKSGVTWIGNIGWAMFLLSILATVLYTIALAVRAARSRRPA*
C688J35102_1185299952	3300002568	Soil	MQRIFERPKVVYVVLVVAIVGFFALSAVGNTGTDAQNKASGVTWIGNIGWAMFLISILATILYTVALVVRTIMRRRRGAAA*
C688J35102_1188470682	3300002568	Soil	MGEVMQRIFERPKFVYVGLVVAIVGFFALSAVGNSGTDAQDKASGVTWIGNIGWAMFLISILATILYTVALVIRSILRRRRGAAA*
C688J35102_1196091962	3300002568	Soil	MQRIFDRPKVVYVVLVVAIVGFFALSAVGNNGTDAENKASGVTWIGNIGWAMFLITILATILYTVALVVRTIMRRRRGAAA*
C688J35102_1198915862	3300002568	Soil	MQRIFERPKLVYVGLVVAIVGFFALSAVGNNGTDAQNKASGVTWIGNIGWAMFLISILATILYTVALVVRS
C688J35102_1200384272	3300002568	Soil	MRKIFDRPKVTYVVLAVAIVGFFALSAVGNTGDHDTNVTWIGNIGWAMFLLSILATIVYTVALLIRAVMRRRTA*
C688J35102_1206990713	3300002568	Soil	MGDVMQRVFERPKVVYVALVVALVGFFALSAVGNTGTDAQNKASGVTWIGDIGWTMFMVSILATILYTVALVVRSIVRRRRGAAA*
C688J35102_1209754733	3300002568	Soil	MGDVMQRVFERPKVVYVGLVVAIVGFFALSAVGNSGTDAQNKASGVTWIGDIGWAMFLISILATILYTVALVVRAIVRRRRGAAV*
soilH1_102685884	3300003321	Sugarcane Root And Bulk Soil	MQRVFARPKLVYVGLVVALVAFFALSSVGNSGTDAQNKASSVGWIGDIGWALFMVSVLATILYSIALLVRTIVRRRRTA*
soilH2_100783032	3300003324	Sugarcane Root And Bulk Soil	MSRIFNRPKVAYVVLVVAIVAFFGLSAVGNTGDHNTDWTWLGNIGWVMFMLSILATIVYTVAMVVRAIMHRRNVAA*
Ga0063454_1006184831	3300004081	Soil	GDVMQRVFERPKVVYVALVVALVGFFALSAVGNTGTDAQNKASGVTWIGDIGWTMFMVSILATILYTVALVVRSIVRRRRGAAA*
Ga0063454_1006340951	3300004081	Soil	RPKVVYVVLVVAIVRFFALSAVGNNGTDAENKASGVTWIGDIGWAMFLITILATILYTVALVVRTIMRRRRGAAA*
Ga0062594_1022410491	3300005093	Soil	MKRIFERPKATYVVLVVAIVGFFALSAVGNTGDKDTDWTWLGNIGWAMFMLSILATIVYTVALLVVVARRRRTTA*
Ga0062594_1026346902	3300005093	Soil	MQRVFERPKVVYVGLVIAIVGFFALSAVGNTGTDAQNKASGVTWIGNIGWAMFMISILATILYTVALVVRTIVRRRRGAAA*
Ga0066672_102255702	3300005167	Soil	MGDVMQRVFERPKVVYVALVVAIVGFFALSAVGNSGTDAQNKASGVTWIGNIGWAMFMISILATILYTVALVVRSIVRRRRGAAA*
Ga0066671_106462512	3300005184	Soil	MRKIFERPKVTYVVLVVAIVGFFALSAVGNTGDHDTNVTWIGNIGWAMFLLSLLATILYTIALGVRTIRSRRTA*
Ga0066676_110730132	3300005186	Soil	ERPKFVYVGLVVAIVGFFALSAVGNNGTDAQNKASGVTWIGDIGWAMFLISILATILYTVALVVRSIVRRRRGAAA*
Ga0070658_1000098021	3300005327	Corn Rhizosphere	MQHIFARPKVTYVVLVVAIVGFFALSAVGNSGTDEQNKHSSVGWLGSIGWIAFLLSVLATIVFSVMLLVRTARRRKAAA*
Ga0070658_101879523	3300005327	Corn Rhizosphere	RPKVVYVGLVVAIVAFFALSAVGNTGTDAQNKASGVTWIGDIGWAMFLISILATILYTVALVVRAVVRRRRRDATA*
Ga0070658_105443773	3300005327	Corn Rhizosphere	RPKVVYVGLVVAIVAFFALSAVGNTGTDAQNKASGVTWIGDIGWAMFLISILATILYTIALVVRAVVRRRRRDVTA*
Ga0070658_107687072	3300005327	Corn Rhizosphere	MTRGIVMQRLFERPKVVYVALVVAIVAFFALSAVGNTGTDAQNKASGVTWIGNIGWAMFLISILATVLYSIALVVRAIMRRRRGAAA*
Ga0070658_113626822	3300005327	Corn Rhizosphere	MERVFARPKVVYVGLVVAIVAFFALSAVGNTGTDAQNKASGVTWIGNIGWAMFMISILATILYTVALVVRTIVRRRRGVAA*
Ga0070658_117514282	3300005327	Corn Rhizosphere	MQRLFERPKVVYVGLVVAIVAFFALSAVGNTGTDAQNKASGVTWIGDIGWAMFLISILATILYTVALVVRAVLRRRRRDATA*
Ga0070658_118950121	3300005327	Corn Rhizosphere	GADMQKIFERPKVTYVVLVVAIVGFFALSAVGNTGDHDTNVTWIGDIGWFAFLLSVLATILYTVALAVRAMRNRRTA*
Ga0070683_1001933015	3300005329	Corn Rhizosphere	MQRVFDRPKVVYVVLVVAIVGFFALSAVGNTGTDAQNKASGVTWIGDIGWAMFLISILATVLYTVALVVRMIVRRRRGVAA*
Ga0070666_111982311	3300005335	Switchgrass Rhizosphere	MQRVFERPKVVYVGLVIAIVGFFALSAVGNTGTDAQNKASGVTWIGDIGWAMFMISILATILYTVALVVRTIVRRRRGVA
Ga0070680_1000879033	3300005336	Corn Rhizosphere	MQKIFERPKVTYVVLVVAIVGFFALSAVGNTGDHDTNVTWIGDIGWFAFLLSVLATILYTVALAVRAMRNRRTA*
Ga0070680_1003227852	3300005336	Corn Rhizosphere	MQRVFARPKLVYVGLVVALVAFFALSAVGNSGTDAQNKASSVGWIGDIGWALFMLSVLATILYTIALLVRTIVRRRRSVA*
Ga0070680_1008359551	3300005336	Corn Rhizosphere	VHRIFSRPKVTYVALVVAIVGFFALSAVGNTGSDAQNKASNVSWIGDIGWAMFLISILATVVYTAGLLIRTLRRRRNVTA*
Ga0070682_1005867291	3300005337	Corn Rhizosphere	MQRVFARPKLVYVGLVVALVAFFALSAVGNSGTDAQNKASSVGWIGDIGWALFMLSVLATILYTIALLVRTIVRRRRSSVA*
Ga0070660_1001232123	3300005339	Corn Rhizosphere	MQRLFERPKVVYVGLVVAIVAFFALSAVGNTGTDAQNKASGVTWIGDIGWAMFLISILATILYTIALVVRAVVRRRRRDVTA*
Ga0070660_1003000732	3300005339	Corn Rhizosphere	MGEVMQRVFDRPKVVYVGLVVAIVGFFALSAVGNTGTDAQNKASGVTWIGDIGWTMFLISILATILYTVALVVRTIVRRRRGVAA*
Ga0070660_1009871762	3300005339	Corn Rhizosphere	MQRLFERPKLTYIVLVVAIVGFFALSAVGNTGKHDTNVTWIGDTGWWLFVLSLLTTIVYSVALLVRGVVRRRRATT*
Ga0070660_1012114712	3300005339	Corn Rhizosphere	MQRVFDRPKVVYVGLVVAIVAFFALSAVGNTGTDAQNKASGVTWIGNIGWAMFMISILATILYTVALVVRTILRRRRGVAA*
Ga0070661_1019300341	3300005344	Corn Rhizosphere	MSRLFDRPKVTYTVLVVLLVGLFALSAVGNSGTDAQNKASSVGWIGSIGWFGFLLTVLATLLYTLALVVRAFRSRRVA*
Ga0070674_1009611891	3300005356	Miscanthus Rhizosphere	MQRVFERPKVVYVGLVIAIVGFFALSAVGNTGTDAQNKASGVTWIGDIGWAMFMISILATILYTVALVVRTIVRRRRGVAA*
Ga0070659_1020555201	3300005366	Corn Rhizosphere	MQRLFAKPKLVYVGLVVALVGFFALSAVGNTGTDAQNKASGVTWIGNIGWAMFMISILATVLYTVALVVR
Ga0070714_1008319342	3300005435	Agricultural Soil	MGEAMQRVFDRPKVVYVVLVVALVGFFALSAVGNSGTDAQNKASSVGWIGNIGWAMFMLSILATILYTVALVVRTIVRRRRRAAA*
Ga0070713_1014321641	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MRRIFDRPKVTYVVLVVAIVAFFGLSAVGNTGTDAQNKASSVGWIGNIGWAMFMISILATVVYSVALLIRTLRRRNRVTA*
Ga0070679_1006492582	3300005530	Corn Rhizosphere	MQKIFARPKVTYVVLVVAIVGFFALSAVGNTGDHDTNVTWIGNIGWAMFLLSILATILYTVALAIRAVRHRRTA*
Ga0066670_101036944	3300005560	Soil	MQRIFERPKFVYVGLVVAIVGFFALSAVGNNGTDAQNKASGVTWIGDIGWAMFLISILATILYTVALVVRSIVRRRRGAAA*
Ga0068855_1011971962	3300005563	Corn Rhizosphere	MGDLMQRVFDRPKVVYVALVVAIVAFFALSSVGNSGTDAQNKASGVTWIGDIGWTLFLLSILATILYTVALVVRMIMRRRRGVAA*
Ga0066654_100975943	3300005587	Soil	MQRLFERPKFVYVALVVAIVGFFALSAVGNNGTDAQNKASGVTWIGNIGWAMFLVSILATILYTIALVVRTVLRRRRGVAA*
Ga0066654_101192801	3300005587	Soil	MQRIFERPKLVYVGLVVAIVGFFALSAVGNSGTDAQNKASGVTWIGDIGWAMFLISILATILYTVALVVRSIVRRRRGVAA*
Ga0066654_101989021	3300005587	Soil	MQRIFERPKFVYVGLVVAIVGFFALSAVGNNGTDAQNKASGVTWIGNIGWAMFLISILATILYTVALVVRSIVRRRRGAAA*
Ga0066656_111384982	3300006034	Soil	KVTYVVLVVAIVGFFALSSVGNSGTDAQNAKSSVGWIGDIGWFAFLLTILATILYTVALVVRAARNRRTA*
Ga0068865_1002903732	3300006881	Miscanthus Rhizosphere	MQRVFERPKVVYVGLVIAIVGFFALSAVGNTGTDAQNKASGVTWIGNIGWAMFMISILATILYSVALVVRTVVRRRRGVAA*
Ga0105240_102884081	3300009093	Corn Rhizosphere	MGEAMQRVFDRPKVVYVVLVVAIVGFFALSSVGNSGTDAQNKASSVGWIGDIGWAMFLISILATILYTVALVVRTIVRRRRGAAA*
Ga0105245_101533584	3300009098	Miscanthus Rhizosphere	MQRVFDRPKVVYVALVVAIVAFFALSSVGNSGTDAQNKASGVTWIGDIGWTLFLLSILATILYTVALVVRMIMRRRRGVAA*
Ga0105245_125883682	3300009098	Miscanthus Rhizosphere	MSRIFNRPKVAYVVLIVAIVGFFGLSAVGNTGDKDTDWTWLGNIGWALFMLSILATILYTVVLVVRTVLRRRNAAT*
Ga0066709_1043787462	3300009137	Grasslands Soil	MNKIFDRPKITYVVLVVAIVGFFALSAVGNSGTDAQNAKSSVGWIGDIGWFAFLLSILATILFTVALLVRTLRRRRRSTA*
Ga0105242_101662562	3300009176	Miscanthus Rhizosphere	MQRVFERPKVVYVGLVIAIVGFFALSAVGNTGTDAQNKASGVTWIGNIGWAMFMISILATILYTVALVVRTVVRRRRGVAA*
Ga0105238_126958632	3300009551	Corn Rhizosphere	MQRVFERPKVVYVGLVIAIVGFFALSAVGNTGTDAQNKASGVTWVGNIGWAMFMISILATILYTVALVVRTIVRRRRGVAA*
Ga0134063_107757682	3300010335	Grasslands Soil	ADMRKIFERPKVTYVVLVVAIVGFFALSAVGNTGDHDTNVTWIGNIGWAMFLLSLLATILYTIALGVRTIRSRRTA*
Ga0150985_1136098242	3300012212	Avena Fatua Rhizosphere	MRKIFERPKVTYVVLVVAIVGFFALSAVGNNGTDAENAKSGVTWIGNIGWAMFLLSILATILYTIALAVRAARSRRPA*
Ga0150985_1150940622	3300012212	Avena Fatua Rhizosphere	GDVMQRVFERPKVVYVALVVALVGFFALSAVGNSGTDAQNKASGVTWIGDIGWTMFMISILATILYTVALVVRSIVRRRRGAAA*
Ga0150984_1141969642	3300012469	Avena Fatua Rhizosphere	MQRVFERPKVTYVVLVVMIVGFFALSAVGNTGDKDTNVTWIGNVGWFMFGLSLLLTIVYTIALGVRAVMRRRRNDATT*
Ga0150984_1166115031	3300012469	Avena Fatua Rhizosphere	MQRVFERPKVVYVALVVALVGFFALSAVGNTGTDAQNKASGVTWIGDIGWTMFMVSILATILYTVALVVRSIVRRRRGAAA*
Ga0150984_1235065532	3300012469	Avena Fatua Rhizosphere	YMGEVMQRIFERPKLVYVGLVVAIVGFFALSAVGNSGTDAQNKASGVTWIGNIGWAMFLISILATILYTVALVVRSIVRRRRGAAA*
Ga0164300_105223351	3300012951	Soil	MQRVFERPKVVYVGLVIAIVGFFALAAVGNTGTDAQNKASGVTWIGNIGWAMFMISILATILYTVALVVRTIVRRRRGAAA*
Ga0164302_114440842	3300012961	Soil	VAIVGFFALSAVGNTGTDAQNKASGVTWIGNIGWAMFMISILATILYTVALVVRTIVRRRRGAAA*
Ga0157374_112053862	3300013296	Miscanthus Rhizosphere	MGDLMQRVFDRPKVVYVALVVAIVAFFALSSVGNSGTDAQNKASGVTWIGDIGWTLFLLSSLATIRYTVALVVRMIMRRRRGVAA*
Ga0157378_113485781	3300013297	Miscanthus Rhizosphere	MQRVFERPKVVYVGLVIAIVGFFALSAVGNTGTDAQNKASGVTWIGNIGWAMFMISILATILYTVALVVRTVVQRRRGVAA*
Ga0157372_103844722	3300013307	Corn Rhizosphere	MSRIFSRPKLAYVVLVVAIVAFFGLSAVGNTGDHDTNWTWLGDIGWWMFLLSILSTIVYTVALIVRSVARRRNATT*
Ga0157372_124805842	3300013307	Corn Rhizosphere	MQRLFERPKVVYVALVVAIVAFFALSAVGNTGTDAQNKASGVTWIGNIGWAMFLISILATVLYSIALVVRAIMRRRRGAAA*
Ga0157372_125018122	3300013307	Corn Rhizosphere	MKRIFERPKTTYVVLVVAIVGFFALSAVGNTGDKDTDWTWLGNIGWALFLLSILATIVYTVALVVRAILHRRNAAA*
Ga0157372_134631761	3300013307	Corn Rhizosphere	MQRVFDRPKVVYVGLVVAIVGFFALSAVGNTGTDAQNKASGVTWIGDIGWTMFMISILATILYTVALVVRTIVRRRRRVAA*
Ga0134073_101120172	3300015356	Grasslands Soil	MGEVMQRIFERPKLVYVGLVVAIVGFFALSAVGNSGTDAQNKASGVTWIGDIGWAMFLISILATILYTVALVVRSIVRRRRGAAA*
Ga0132258_128262162	3300015371	Arabidopsis Rhizosphere	MGRIFNRPKVTYVVLVVAIVAFFGLSAVGNTGDHDTDWTWLGNIGWAMFLASILATIVYTVALVVRAFVRRRNVAA*
Ga0134083_103816092	3300017659	Grasslands Soil	MGEVMQRIFERPKLVYVGLVVAIVGFFALSAVGNTGTDAQNKASGVTWIGNIGWAMFLVSILATILYTIALVVRTVLRRRRGVAA
Ga0134083_104797051	3300017659	Grasslands Soil	MRRIFDRPKVTYVVLVVAIVGFFALSAVGNTGDKDTNVTWIGNIGWAMFLLSLLATIVYTVALLVRAVLRRRSTA
Ga0066655_104138422	3300018431	Grasslands Soil	MQRIFERPKFVYVGLVVAIVGFFALSAVGNNGTDAQNKASGVTWIGDIGWAMFLISILATILYTVALVVRSIVRRRRGAAA
Ga0066662_105257222	3300018468	Grasslands Soil	MQRLFDRPKVVYIGLVVAIVGFFALSAVGNSGTDAQNKASSVGWIGDIGWAMFMISILVTILYTLALVVRTIVRRRRSGVVA
Ga0197907_109076821	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	GNQMQRIFARPKVTYVVLVVAIVGFFALSSVGNSGTDEQNKHSSVGWIGSIGWIAFLLSVLATIVFSVTLLVRTARRRKAAA
Ga0197907_112925432	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MQRLFERPKVVYVGLVVAIVAFFALSAVGNTGTDAQNKASGVTWIGDIGWAMFLISILATILYTVALVVRAVVRRRRRDATA
Ga0206356_111168571	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	TLSSDNVRGTSSGLCHITGGMDMQRLFAKPKLVYVGLVVALVGFFALSAVGNTSDTAKKTSSVTWIGDIGWTLFLLSVLATILYTVALLVRTIVRRRRSSVA
Ga0206352_111419412	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	MQRLFGRPKVVYVALVVAIVGFFALSAVGNTGTDAQDKASGVTWIGNIGWAMFLISILATVLYSIALVVRTIVRRRRGAAA
Ga0206350_103911461	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	QRLFERPKVVYVGLVVAIVAFFALSAVGNTGTDAQNKASGVTWIGDIGWAMCLISILATILYTIALVVRAVVRRRRRDVTA
Ga0206354_100912532	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	GMDMQRLFAKPKLVYVGLVVALVGFFALSAVGNTSDTAKKTSSVTWIGDIGWTLFLLSVLATILYTVALLVRTIVRRRRSSVA
Ga0206354_101643783	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	GGNQMQHIFARPKVTYVVLVVAIVGFFALSAVGNSGTDEQNKHSSVGWLGSIGWIAFLLSVLATIVFSVMLLVRTARRRKAAA
Ga0206354_110223251	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MQRLFERPKVVYVGLVVAIVAFFALSAVGNTGTDAQNKASGVTWIGDIGWAMFLISILATILYTIALVVRAVVRRRRRDVTA
Ga0206353_114213053	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MSKIFDRPKVTYVVLVVAIVAFFALSGVGNSGTDAQNAKSSVGWIGSIGWIAFLLTILATILFTIALVIRTIRHRRTA
Ga0154015_10262442	3300020610	Corn, Switchgrass And Miscanthus Rhizosphere	AVGRKTPAHMTRGVVMQRLFERPKVVYVALVVAIVAFFALSAVGNTGTDAQNKASGVTWIGNIGWAMFLISILATVLYSIALVVRTIVRRRRGAAA
Ga0224712_102386932	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	MGEAMQRLFERPKVVYVGLVVAIVAFFALSAVGNTGTDAQNKASGVTWIGDIGWAMFLISILATILYTIALVVRAVVRRRRRDVTA
Ga0207705_1000088221	3300025909	Corn Rhizosphere	MQHIFARPKVTYVVLVVAIVGFFALSAVGNSGTDEQNKHSSVGWLGSIGWIAFLLSVLATIVFSVMLLVRTARRRKAAA
Ga0207705_100557063	3300025909	Corn Rhizosphere	MQRVFERPKVVYVGLVVAIVAFFALSAVGNTGTDAQNKASGVTWIGNIGWAMFMISILATILYTVALVVRTILRRRRGVAA
Ga0207705_112423852	3300025909	Corn Rhizosphere	MERVFARPKVVYVGLVVAIVAFFALSAVGNTGTDAQNKASGVTWIGNIGWAMFMISILATILYTVALVVRTIVRRRRGVAA
Ga0207705_114232991	3300025909	Corn Rhizosphere	HEPEGADMQKIFERPKVTYVVLVVAIVGFFALSAVGNTGDHDTNVTWIGDIGWFAFLLSVLATILYTVALAVRAMRNRRTA
Ga0207705_115369791	3300025909	Corn Rhizosphere	MTRGIVMQRLFERPKVVYVALVVAIVAFFALSAVGNTGTDAQNKASGVTWIGNIGWAMFLISILATVLYSIALVVRAIMRRRRGAAA
Ga0207707_100914874	3300025912	Corn Rhizosphere	MQKIFERPKVTYVVLVVAIVGFFALSAVGNTGDHDTNVTWIGDIGWFAFLLSVLATILYTVALAVRAMRNRRTA
Ga0207707_101729574	3300025912	Corn Rhizosphere	MQRVFARPKLVYVGLVVALVAFFALSAVGNSGTDAQNNKASSVGWIGDIGWALFMLSVLATILYTIALLVRTIVRRRRSVA
Ga0207707_114421022	3300025912	Corn Rhizosphere	AKPKLVYVGLVVALVGFFALSAVGNTSDTAKKTSSVTWIGDIGWTLFLLSVLATILYTVALLVRTIVRRRRSSVA
Ga0207660_101190433	3300025917	Corn Rhizosphere	MQRVFARPKLVYVGLVVALVAFFALSAVGNSGTDAQNKASSVGWIGDIGWALFMLSVLATILYTIALLVRTIVRRRRSVA
Ga0207657_102989442	3300025919	Corn Rhizosphere	MGGPMQRLFERPKLTYIVLVVAIVGFFALSAVGNTGKHDTNVTWIGDTGWWLFVLSLLTTIVYSVALLVRGVVRRRRATT
Ga0207657_108655912	3300025919	Corn Rhizosphere	MQRVFDRPKVVYVGLVVAIVGFFALSAVGNTGTDAQNKASGVTWIGDIGWTMFMISILATILYTVALVVRT
Ga0207687_101545442	3300025927	Miscanthus Rhizosphere	MQRVFDRPKVVYVALVVAIVAFFALSSVGNSGTDAQNKASGVTWIGDIGWTLFLLSILATILYTVALVVRMIMRRRRGVAA
Ga0207700_118922552	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	KGVGMRRIFDRPKVTYVVLVVAIVAFFGLSAVGNTGTDAQNKASSVGWIGNIGWAMFMISILATVVYSVALLIRTLRRRNRVTA
Ga0207664_109363322	3300025929	Agricultural Soil	MQRVFDRPKVVYVVLVVALVGFFALSAVGNSGTDAQNKASSVGWIGSIGWAMFLLSILATILYTVALVVRTIVRRRRGAAA
Ga0207690_116130701	3300025932	Corn Rhizosphere	MQRVFARPKLVYVGLVVALVAFFALSAVGNSGTDAQNKASSVGWIGDIGWALFMLSVLATILYTIALLVRTIVRRRRSSVA
Ga0207686_102475573	3300025934	Miscanthus Rhizosphere	MQRVFERPKVVYVGLVIAIVGFFALSAVGNTGTDAQNKASGVTWIGNIGWAMFMISILATILYTVALVVRTVVRRRRGVAA
Ga0207702_116290752	3300026078	Corn Rhizosphere	MQRLFERPKVVYVGLVVAIVAFFALSAVGNTGTDAQNKASGVTWIGDIGWAMFMISILATILYTVALVVRTIVRRRRGVAA
Ga0209154_11215692	3300026317	Soil	MQRVFERPKVVYVALVVAIVGFFALSAVGNSGTDAQNKASGVTWIGNIGWAMFMISILATILYTVALVVRSIVRRRRGAAA
Ga0209059_10689381	3300026527	Soil	MQRVFDRPKVVYVALVVAIVAFFALSAVGNSGTDAQNKASGVTWIGNIGWAMFLISILATILYTVALVVR
Ga0308175_1000658822	3300031938	Soil	MQRLFDRPKVTYVALVVMIVGFFALSSVGNTGDKDTNVTWIGNIGWALFLVSILLTIVYTVTLAVRAVMRRRRDGATV
Ga0308175_1000666233	3300031938	Soil	MQKIFQRPKVTYVVLVVAIVGFFALSAVGNTGDHDTNVTWIGDIGWFAFLLSILATILYTVALAVRAMRHRRTA
Ga0372943_1027771_274_510	3300034268	Soil	MSRLFQRPKVTYTVLVVLMVGLFALSAVGNNGTDAENAASGVTWIGNIGWAGFMLTVLATILFTIALAVRAMRSRRVA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093398

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences