Metagenome / Metatranscriptome Family F093392

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093392
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	75 residues
Representative Sequence	MDIETRLRKLESRYRAALSATVAAKATYLALAGEPSATPHAIERAKSLWQQLDARKRTIAAQMGELEALEDTNY
Number of Associated Samples	76
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	72.28 %
% of genes near scaffold ends (potentially truncated)	21.70 %
% of genes from short scaffolds (< 2000 bps)	65.09 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.75

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.943 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (15.094 % of family members)
Environment Ontology (ENVO)	Unclassified (30.189 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 64.71% β-sheet: 0.00% Coil/Unstructured: 35.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.75
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.75
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
f.5.1.0: automated matches	d1yc9a_	1yc9	0.90932
a.238.1.4: FCH domain	d2efka1	2efk	0.88871
f.5.1.0: automated matches	d5azsa_	5azs	0.87701
a.13.1.1: RAP domain	d2fcwa1	2fcw	0.87673
a.7.5.1: Tubulin chaperone cofactor A	d1qsda_	1qsd	0.86791

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF02739	5_3_exonuc_N	4.72
PF03061	4HBT	3.77
PF01663	Phosphodiest	2.83
PF04471	Mrr_cat	1.89
PF05016	ParE_toxin	1.89
PF00583	Acetyltransf_1	1.89
PF02586	SRAP	1.89
PF01717	Meth_synt_2	1.89
PF02321	OEP	1.89
PF12587	DUF3761	0.94
PF03466	LysR_substrate	0.94
PF04174	CP_ATPgrasp_1	0.94
PF00593	TonB_dep_Rec	0.94
PF14534	DUF4440	0.94
PF00753	Lactamase_B	0.94
PF13676	TIR_2	0.94
PF07690	MFS_1	0.94
PF09360	zf-CDGSH	0.94
PF00483	NTP_transferase	0.94
PF03786	UxuA	0.94
PF00132	Hexapep	0.94
PF08447	PAS_3	0.94
PF13614	AAA_31	0.94
PF00248	Aldo_ket_red	0.94
PF04389	Peptidase_M28	0.94
PF01963	TraB_PrgY_gumN	0.94
PF16576	HlyD_D23	0.94
PF00174	Oxidored_molyb	0.94
PF01019	G_glu_transpept	0.94
PF01116	F_bP_aldolase	0.94
PF13211	DUF4019	0.94
PF12802	MarR_2	0.94
PF01145	Band_7	0.94
PF13432	TPR_16	0.94
PF12228	DUF3604	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	Replication, recombination and repair [L]	4.72
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	3.77
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	1.89
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	1.89
COG0191	Fructose/tagatose bisphosphate aldolase	Carbohydrate transport and metabolism [G]	0.94
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	0.94
COG1312	D-mannonate dehydratase	Carbohydrate transport and metabolism [G]	0.94
COG1916	Pheromone shutdown protein TraB, contains GTxH motif (function unknown)	Function unknown [S]	0.94
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.94
COG2308	Circularly permuted ATP-grasp protein	General function prediction only [R]	0.94
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.94 %
All Organisms	root	All Organisms	49.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.94 %
cellular organisms	root	All Organisms → cellular organisms	49.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.94 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	49.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	26.42 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5.66 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.77 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.83 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.89 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.94 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	2.83 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.89 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	1.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.94 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.83 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.89 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	0.94 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.94 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	0.94 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.94 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.94 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.94 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.83 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.89 %
unclassified Steroidobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae	0.94 %
Klebsiella/Raoultella group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group	0.94 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.94 %
Nevskia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia	0.94 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.94 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.94 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.83 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.89 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.94 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	0.94 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.94 %
Klebsiella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella	0.94 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.94 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.94 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.83 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.89 %
unclassified Nocardioides	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides	0.94 %
Klebsiella pneumoniae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	0.94 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.94 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	0.94 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.94 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.94 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.83 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.89 %
Nocardioides sp. InS609-2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. InS609-2	0.94 %
Klebsiella pneumoniae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	0.94 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.94 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	0.94 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.94 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002917\|JGI25616J43925_10091745	All Organisms → cellular organisms → Bacteria	1262	Open in IMG/M
3300004080\|Ga0062385_11037337	Not Available	552	Open in IMG/M
3300004092\|Ga0062389_104613035	All Organisms → cellular organisms → Bacteria → Proteobacteria	518	Open in IMG/M
3300004152\|Ga0062386_100061651	All Organisms → cellular organisms → Bacteria → Proteobacteria	2838	Open in IMG/M
3300004152\|Ga0062386_100540619	Not Available	948	Open in IMG/M
3300004152\|Ga0062386_101069907	Not Available	669	Open in IMG/M
3300004152\|Ga0062386_101177482	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300005994\|Ga0066789_10091540	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
3300005995\|Ga0066790_10268409	Not Available	728	Open in IMG/M
3300006059\|Ga0075017_101190915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	596	Open in IMG/M
3300006162\|Ga0075030_100270789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1360	Open in IMG/M
3300006893\|Ga0073928_10268745	All Organisms → cellular organisms → Bacteria → Proteobacteria	1295	Open in IMG/M
3300007265\|Ga0099794_10003083	All Organisms → cellular organisms → Bacteria → Proteobacteria	6297	Open in IMG/M
3300009029\|Ga0066793_10115866	All Organisms → cellular organisms → Bacteria	1558	Open in IMG/M
3300009029\|Ga0066793_10416809	Not Available	770	Open in IMG/M
3300009088\|Ga0099830_10806979	Not Available	774	Open in IMG/M
3300009520\|Ga0116214_1025670	All Organisms → cellular organisms → Bacteria	2108	Open in IMG/M
3300009525\|Ga0116220_10178520	Not Available	916	Open in IMG/M
3300009638\|Ga0116113_1029756	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300009649\|Ga0105855_1139588	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300009683\|Ga0116224_10221667	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300009698\|Ga0116216_10087653	Not Available	1915	Open in IMG/M
3300009709\|Ga0116227_10545498	Not Available	879	Open in IMG/M
3300009759\|Ga0116101_1004059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	2354	Open in IMG/M
3300009764\|Ga0116134_1307774	Not Available	544	Open in IMG/M
3300010339\|Ga0074046_10498180	Not Available	727	Open in IMG/M
3300010341\|Ga0074045_10493808	Not Available	787	Open in IMG/M
3300010379\|Ga0136449_100164104	All Organisms → cellular organisms → Bacteria	4318	Open in IMG/M
3300010379\|Ga0136449_100194692	All Organisms → cellular organisms → Bacteria	3870	Open in IMG/M
3300010379\|Ga0136449_100447690	Not Available	2267	Open in IMG/M
3300010379\|Ga0136449_100985698	Not Available	1359	Open in IMG/M
3300010379\|Ga0136449_102154970	Not Available	815	Open in IMG/M
3300010379\|Ga0136449_102764922	Not Available	694	Open in IMG/M
3300011269\|Ga0137392_10380981	Not Available	1170	Open in IMG/M
3300011270\|Ga0137391_10535691	Not Available	988	Open in IMG/M
3300012096\|Ga0137389_10081596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	2528	Open in IMG/M
3300012189\|Ga0137388_11528264	Not Available	604	Open in IMG/M
3300012203\|Ga0137399_10217769	Not Available	1556	Open in IMG/M
3300012917\|Ga0137395_10001626	All Organisms → cellular organisms → Bacteria → Proteobacteria	10531	Open in IMG/M
3300012929\|Ga0137404_10003685	All Organisms → cellular organisms → Bacteria → Proteobacteria	10200	Open in IMG/M
3300012929\|Ga0137404_11921723	Not Available	551	Open in IMG/M
3300014156\|Ga0181518_10070190	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2022	Open in IMG/M
3300014156\|Ga0181518_10277846	Not Available	841	Open in IMG/M
3300014158\|Ga0181521_10163629	All Organisms → cellular organisms → Bacteria	1261	Open in IMG/M
3300014159\|Ga0181530_10025884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	4314	Open in IMG/M
3300014164\|Ga0181532_10022973	All Organisms → cellular organisms → Bacteria	4477	Open in IMG/M
3300014164\|Ga0181532_10451304	Not Available	709	Open in IMG/M
3300014164\|Ga0181532_10612950	Not Available	590	Open in IMG/M
3300014165\|Ga0181523_10090514	Not Available	1845	Open in IMG/M
3300014165\|Ga0181523_10370688	Not Available	800	Open in IMG/M
3300014489\|Ga0182018_10144787	All Organisms → cellular organisms → Bacteria	1361	Open in IMG/M
3300014501\|Ga0182024_10041916	All Organisms → cellular organisms → Bacteria	7493	Open in IMG/M
3300014657\|Ga0181522_11035890	Not Available	509	Open in IMG/M
3300015053\|Ga0137405_1174200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2346	Open in IMG/M
3300015241\|Ga0137418_10839069	Not Available	684	Open in IMG/M
3300016750\|Ga0181505_10186698	Not Available	1326	Open in IMG/M
3300016750\|Ga0181505_11172646	Not Available	874	Open in IMG/M
3300017938\|Ga0187854_10300534	Not Available	686	Open in IMG/M
3300017943\|Ga0187819_10010252	All Organisms → cellular organisms → Bacteria → Proteobacteria	5294	Open in IMG/M
3300017948\|Ga0187847_10015752	All Organisms → cellular organisms → Bacteria → Proteobacteria	4808	Open in IMG/M
3300017955\|Ga0187817_10059996	Not Available	2353	Open in IMG/M
3300017955\|Ga0187817_10406516	Not Available	869	Open in IMG/M
3300017955\|Ga0187817_10572853	Not Available	720	Open in IMG/M
3300018038\|Ga0187855_10660310	Not Available	609	Open in IMG/M
3300018040\|Ga0187862_10417285	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	821	Open in IMG/M
3300018043\|Ga0187887_10764808	Not Available	571	Open in IMG/M
3300020199\|Ga0179592_10508313	Not Available	515	Open in IMG/M
3300021404\|Ga0210389_11530784	Not Available	506	Open in IMG/M
3300021420\|Ga0210394_10013769	All Organisms → cellular organisms → Bacteria	7793	Open in IMG/M
3300021420\|Ga0210394_10017711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6693	Open in IMG/M
3300021474\|Ga0210390_10022485	All Organisms → cellular organisms → Bacteria	5132	Open in IMG/M
3300025634\|Ga0208589_1008512	All Organisms → cellular organisms → Bacteria → Proteobacteria	3220	Open in IMG/M
3300026291\|Ga0209890_10072178	All Organisms → cellular organisms → Bacteria → Proteobacteria	1234	Open in IMG/M
3300026551\|Ga0209648_10702510	Not Available	552	Open in IMG/M
3300027671\|Ga0209588_1147020	Not Available	748	Open in IMG/M
3300027812\|Ga0209656_10251115	Not Available	836	Open in IMG/M
3300027824\|Ga0209040_10003840	All Organisms → cellular organisms → Bacteria → Proteobacteria	11436	Open in IMG/M
3300027824\|Ga0209040_10007567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7814	Open in IMG/M
3300027854\|Ga0209517_10342503	Not Available	859	Open in IMG/M
3300027905\|Ga0209415_10039554	Not Available	6431	Open in IMG/M
3300027905\|Ga0209415_10121231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2760	Open in IMG/M
3300027911\|Ga0209698_10267898	All Organisms → cellular organisms → Bacteria	1360	Open in IMG/M
3300028746\|Ga0302233_10297432	Not Available	611	Open in IMG/M
3300028773\|Ga0302234_10222236	Not Available	815	Open in IMG/M
3300028808\|Ga0302228_10435328	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300029987\|Ga0311334_11713826	Not Available	535	Open in IMG/M
3300030053\|Ga0302177_10026905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3631	Open in IMG/M
3300030760\|Ga0265762_1086054	Not Available	679	Open in IMG/M
3300030907\|Ga0074013_11706645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. InS609-2	531	Open in IMG/M
3300031236\|Ga0302324_100808056	All Organisms → cellular organisms → Bacteria	1304	Open in IMG/M
3300031708\|Ga0310686_100896843	All Organisms → cellular organisms → Bacteria → Proteobacteria	1496	Open in IMG/M
3300031708\|Ga0310686_103233280	All Organisms → cellular organisms → Bacteria → Proteobacteria	4317	Open in IMG/M
3300031708\|Ga0310686_103388305	All Organisms → cellular organisms → Bacteria → Proteobacteria	7616	Open in IMG/M
3300031708\|Ga0310686_104469369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1057	Open in IMG/M
3300031708\|Ga0310686_104478814	All Organisms → cellular organisms → Bacteria	2613	Open in IMG/M
3300031708\|Ga0310686_108613160	Not Available	530	Open in IMG/M
3300031726\|Ga0302321_100239281	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1916	Open in IMG/M
3300032160\|Ga0311301_10298662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2583	Open in IMG/M
3300032160\|Ga0311301_10308445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	2525	Open in IMG/M
3300032160\|Ga0311301_10506971	All Organisms → cellular organisms → Bacteria → Proteobacteria	1786	Open in IMG/M
3300034125\|Ga0370484_0029291	Not Available	1303	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.06%
Host-Associated	Host-Associated	0.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.32%
Aquatic	Environmental → Aquatic	37.74%
Plants	Host-Associated → Plants	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.72%
Freshwater	Environmental → Aquatic → Freshwater	33.96%
Peat	Environmental → Terrestrial → Peat	6.60%
Sediment	Environmental → Aquatic → Sediment	2.83%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.94%
Peat Moss	Host-Associated → Plants → Peat Moss	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.40%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	33.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.32%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.83%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.94%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	27.36%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	7.55%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.60%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.72%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.77%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.89%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.94%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.94%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	15.09%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.21%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	11.32%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	8.49%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	7.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.72%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.77%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.83%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	2.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.89%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	1.89%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.89%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.94%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.94%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.94%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.94%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.94%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.94%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009638	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10	Environmental	Open in IMG/M
3300009649	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-059	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015197	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300025634	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300029987	I_Fen_E3 coassembly	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030907	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Wood TCEFB (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25616J43925_100917452	3300002917	Grasslands Soil	MDIEARLRKLESRYRAALSAAVAAKAHYLALAGEPSATPATVERANALWKQLESRKRTIAAQMGELEALEDADAS*
Ga0062385_110373371	3300004080	Bog Forest Soil	MDIESRLRKLETRYRAALSASVAAKSRYLALAGESSATPVAVRRARDQWQELESRKKLIAERMDEVERLEHDAIG*
Ga0062389_1046130351	3300004092	Bog Forest Soil	MDIEARLRTLESRYRAALSATVVAKAHYLALEGEPSASLTAIGRAKSLWQQLDSRKRSIAAQMRELEALEVN*
Ga0062386_1000616512	3300004152	Bog Forest Soil	MDMESRLRKLESRYRDALGATVAAKAHYLALAGEPSATPAAIERARAHWRQLEARKRGIAARMGEVEDSEHAFG*
Ga0062386_1005406192	3300004152	Bog Forest Soil	MDVEIRLRTLEFRYGAVWSAAAAAKAKYLALAEEPSATAFATERAKLRWRLLDALKRTIAAQMGEHEEFEPDATH*
Ga0062386_1010699072	3300004152	Bog Forest Soil	LHRLEVRYRAALSGAVVAKAQYLALAGEPSAMPAAIERAKLQWLKVDAHKRAIVARMGELEDAAV*
Ga0062386_1011774822	3300004152	Bog Forest Soil	MDNTDPMAPMDMESRLRKLESRYRAALGATVAAKAHYLSLAGEPSATPAAIERAKARWQQLEARKRGIAARMGEVEDSEHSYG*
Ga0066789_100915402	3300005994	Soil	MDIEVRFRKLESRYRTALSAAVAARANYLALAGVSGVTPAAVERAKSLWQQIEFRKRIIVAKMAELEALEDAAS*
Ga0066790_102684093	3300005995	Soil	MDIEARLCKLEAQYRAALGTAVAAKAHYFGLAGERTATSVAIEVAKIRWQAMESRKRAIAARMGELEAIEDVTA*
Ga0075017_1011909152	3300006059	Watersheds	MDIEVELQRLESRYRAALSAAVAAKAHYLALVGEPSATPRAIEAAKSRWMLFDSKKRAIAARMGEVEEMDQNAAA*
Ga0075030_1002707892	3300006162	Watersheds	MDIEQRLRKLESKYRATLSAAVAAKAHYLALAGEPSATPRAIEHAKVHWHELEVRKKAVAAQMGELEMLEDSMG*
Ga0073928_102687453	3300006893	Iron-Sulfur Acid Spring	MDIEARLRKLESRYRAALSAAVAAKAHYLALLGEPSATPAAVERARALWTQLDSRKRTIA
Ga0099794_100030833	3300007265	Vadose Zone Soil	MDIEARLRKLESRYRTALSAAVAAKAHYLALAGEPSATPAAVERANALWKQLESRKRTIAAQMGELEALEDAS*
Ga0066793_101158661	3300009029	Prmafrost Soil	RTPKMDIEARLRNLEFRYRALLSATVAAKANYLAFAGEPSATAFAIERAKSNWQQLDARKRTIAAQMGELEELEQVAAL*
Ga0066793_104168091	3300009029	Prmafrost Soil	RTPKMDIEARLRNLEFRYRALLSATVAAKANYLAFAGEPSVTAFAIERAKAHWQQHDARKRTIAVQMGELEELEQVAAL*
Ga0099830_108069792	3300009088	Vadose Zone Soil	MDIEARLRKLESRYRTALSAAVAAKAHYLALAGEPSATPAAVERANALWKQLESRKRTIAAQMGELEALEDVNAS*
Ga0116214_10256703	3300009520	Peatlands Soil	VIRVDIDIRLRALEFRYRAVLSAASAAKANYRALAGEPSTTPFAIERAKCRWQQLDVHKRTIGAQLGEVEELEQGETL*
Ga0116220_101785201	3300009525	Peatlands Soil	VIRVDIDIRLRALEFRYRAVLSAALAAKANYRALAGEPSTTPFAIERAKCRWQQLDVHKRTIGAQLGEVEELEQGETL*
Ga0116113_10297561	3300009638	Peatland	MDMESRLRKLESRYRVAMNAALAAKAHYLALTGEPGATPAAIECARARWQQLDARKRGIAARMGEVEDYELGARA*
Ga0105855_11395882	3300009649	Permafrost Soil	LRKLEFRYRALLSTTVAAKANYLALAGEPRATAFSIERAKFHWQQLDARKRTIAAQMGELEELEQVATL*
Ga0116224_102216672	3300009683	Peatlands Soil	VEVIRVDIEVRLRKLEFRYRAVLSATVAAKANYLALVGEPSATPFAIERAKVHWQQLDARKRTIAAQMGELEELEPVATL*
Ga0116216_100876531	3300009698	Peatlands Soil	VIRVDIDIRLRALEFRYRAVLSAASAAKANYRALAGEPSTTPFAIERAKCRWQQLDVRKRTIGAQLGEVEELEQGETL*
Ga0116227_105454981	3300009709	Host-Associated	MLQATKRRFDMDIEGRLRQLERHYRATLSAAVAAKAHYFALVGEPSALPPTVERAKARWQHLDGLKR
Ga0116101_10040594	3300009759	Peatland	PMDMESRLRKLESRYRVAMNAALAAKAHYLALTGEPGATPAAIECARARWQQLDARKRGIAARMGEVEDYELGARA*
Ga0116134_13077741	3300009764	Peatland	MDIETRLRKLESRYRAALSATVAAKATYLALAGEPSATPHAIERAKSLWQQLDARKRTIAAQMGELEALEDTNY*
Ga0074046_104981801	3300010339	Bog Forest Soil	MDKARLHRLEVRYRAALSGAVVAKAQYLALAGEPSAMPAAIERAKLQWLKVDAHKRAIVARMGELEDAAV*
Ga0074045_101100231	3300010341	Bog Forest Soil	VDIEARLRKLESLHRTALSATVAAKANYFALADEPSSTPYAIERAKTLWQRLDARKRAIAAQLGEIEELDSTKCLTVRVAHR*
Ga0074045_104938081	3300010341	Bog Forest Soil	MLFTSEGGIPKMDIEARLHKLEVRYRAALSGAVAAKAHYLALVGEPSAMPATVARAKLQWLKVDAHKRAI
Ga0136449_1001641045	3300010379	Peatlands Soil	VIRVDIEVRLRALEFRYRAVLSATSAAKANYLALAGEPSTTPFAIERAKLRWQHLDVRKRTIGAQLGEVQELEQGETL*
Ga0136449_1001946921	3300010379	Peatlands Soil	MLFTSEGGIPTMDIEARLRKLEFRYRALLSATVAAKANYLALVGEPSATAFAIERAKSQWQQLDARKRTIAAQMGELEELEQVATL*
Ga0136449_1004476904	3300010379	Peatlands Soil	MDIEIRLRALEFRYRAVLSATSAAKANYLALAGEPSTTHFAIERAKSRWQQLDVRKRTIAAQMGDLEELEQDSTL*
Ga0136449_1009856983	3300010379	Peatlands Soil	VEVIGMDIEIRLRKLELRYRVVLSASVAAKANYLALIGEPSATLFAIDSAKNHWQQLDARKRTIAAQMGELEELEQDATL*
Ga0136449_1021549702	3300010379	Peatlands Soil	MSATENLDAMDMESRLRKLESRYRETLGATVAAKAHYLALAGEPSATPAAIERARAHWRQLEARKRGIAARMGEVEDSEHALG*
Ga0136449_1027649222	3300010379	Peatlands Soil	MGVEARLHRLEVRYRAALSGAVAAKAHYLALVGEPSATPAAIERVKLQWLKLDAHKRAIAARMGELEDASV*
Ga0137392_103809812	3300011269	Vadose Zone Soil	RKLESRYRTALSAAVAAKAHYLALAGEPSATPAAVERANALWKQLESRKRTIAARMGELEALEDAS*
Ga0137391_105356912	3300011270	Vadose Zone Soil	MDIEARLRKLESRYRTALSAAVAAKAHYLALAGEPSATPAAVERANALWKQLESRKRTIAAQMGELEALEGAS*
Ga0137389_100815963	3300012096	Vadose Zone Soil	MDIEARLRKLESRYRTALSAAVAAKAHYLALAGEPSATPAAVERANALWKQLESRKRTIAAQMGELE
Ga0137388_115282642	3300012189	Vadose Zone Soil	MDIESRLRKLESRYRAALSAAVAAKAHYLSLADEGGATPAAVERAEVQWKSLEGRKKAIVEQMDQLERLEQGAMT*
Ga0137399_102177692	3300012203	Vadose Zone Soil	MDIEARLRKLESRYRAALSATVAAKAHYLALAGEPSATPAAVERADALWKQLESRKRTIAAQMGELEALEDADAS*
Ga0137395_100016265	3300012917	Vadose Zone Soil	MDIEARLRKLESRYRTALSAAVAAKAHYLALAGEPSATPAAVERANALWKQLESRKRTLAAQMGGLEALDDVNAS*
Ga0137404_100036856	3300012929	Vadose Zone Soil	MDIEARLRKLESRYRAALSATVAAKAHYLALAGEPSATPAAVERANALWKQLESRKRTIAAQMGELEALEDANAS*
Ga0137404_119217231	3300012929	Vadose Zone Soil	ARLRKLESRYRAALSATVAAKAHYLALAGEPSATPAAVERADALWKQLESRKRTIAAQMGELEALEDADAS*
Ga0181518_100701902	3300014156	Bog	MDIEFRLRMLESRYRAALSAAVAAKAQYLALAGEPGVTPRTLERAKLAWQILDSRKRAIAARMGEIEELDQDARA*
Ga0181518_102778462	3300014156	Bog	MLFTSEGGIPKTDIEARLHRLEVRYRAALSGAVVAKAHYLALVGEPSAMPAAIERANRQWLKVDAHKRAIVARMGELEEAAV*
Ga0181521_101636292	3300014158	Bog	MLFTSEGGIPKMDIEARLHKLEVRYRAALSGAVAAKAHYLALVGEPSAMPATVARAKLQWLKVDAHKCAIAARMGELEDAAV*
Ga0181530_100258846	3300014159	Bog	MDIEVRLRKLEFRYRAVLSATVAAKANYLALAGEPSAIPFAIEQAKSHWQQLDARKRTIAAQMGELEELEQDATL*
Ga0181530_102073002	3300014159	Bog	VAQVDIEARLRKLESLHRTALSATVAAKANYFALADEPNSTPYAIERAKTLWQRLDARKRVIAAQLGDIEELDSTKCSVRVAHRRFAPVR*
Ga0181532_100229735	3300014164	Bog	MDIDIRLRALEFRYRAVVSAASAAKANYLALAGEPSTTPFAIEGAKLRWQHLDVCKRTIGAQLGEREDLEQGETL*
Ga0181532_103312001	3300014164	Bog	VTQVDIKARLRKLQSLHRTALSATVAAKANYFALADEPSSTPYAIERAKTLWQRLDARKRAIAAQLGDIEELDSTKCLTVRVAHPYVPM*
Ga0181532_104513042	3300014164	Bog	VEVIRMDIEIRLRKLELRYRVVLSASVAAKANYLALIGEPSATLFAIENAKTHWQQFDSLKRTIAAQMGELEELE
Ga0181532_106129501	3300014164	Bog	MDIEVRLRKLEFRYRAVLSATVAAKANYLALAGEPSATAFVIERAKAHWQQLDTRKRTIAAQMGELEELEQVAAL*
Ga0181523_100905143	3300014165	Bog	MDIEVRLRKLEFRYRTMLSATVAAKANYLALVGEPSATPFAIERAKSQWQQLDARKRTIAAQMGELEELDQVVIL*
Ga0181523_103706881	3300014165	Bog	VIRVDIEVRLHALEFRYRAVLSATSAAKANYLALAGEPSTTPFAIERAKSRWQQLDVRKRTIAAQMGDLEELESDATL*
Ga0182018_101447873	3300014489	Palsa	MDIEARLRKLEARYRGALSAAVAAKANYLALAGEPSATPYAIERAKALWLEFDMRKRGIAAQMGELEALADAAY*
Ga0182024_100419162	3300014501	Permafrost	MDIEATLRRLESHYRAALSATVAAKASYLALAGELSARPIAIERAKSLWQQLDARKRTIVAQMGELEALEDATS*
Ga0181522_110358902	3300014657	Bog	MDMESRLRKLESRYRVAMNAALAAKAHYLALTGEPGATPAAIECARARWQQLDARKRGIAARM
Ga0137405_11742001	3300015053	Vadose Zone Soil	MDIEARLRKLESRYRAALSATVAAKAHYLALAGEPSATPAAVERANALWKQLESRKRTIYRCANG*
Ga0167638_10828082	3300015197	Glacier Forefield Soil	MDIENRLRKLESLYRAALSAAVAAKARYLALDGEMGSTPATIERAKAVWQTLESRKALLAARMAELERSEHATVT*
Ga0137418_108390692	3300015241	Vadose Zone Soil	DMDIEARLRKLESRYRTALSAAVAAKAHYLALAGEPSTTPAAVERASALWKQLESRKRTLAAQMGELEALDDVNAS*
Ga0181505_101866982	3300016750	Peatland	MDIDIRLRALEFRYRAVVSAASAAKANYLALAGEPSTTPFAIERAKLRWQYLDVRKRTIGAQLGEREDLEQGETL
Ga0181505_111726463	3300016750	Peatland	MDIEDRLRKLEFRYRAVLSATVAAKANYLALVGEPSATPFAIERAKSQWQQLDARKRTIAAQMGELEELDQVVIL
Ga0187854_103005341	3300017938	Peatland	MDIETRLRKLESRYRSALSATVGAKANYLALAGEPCATPAAIERAKSIWQQLDSRKRTIAAQMGE
Ga0187819_100102522	3300017943	Freshwater Sediment	VDIDIRLRALEFRYRAVLRAASAAKANYRALAGEPSTTPFAIERAKCRWQQLDVRKRTIGAQLGDAEELEQGETL
Ga0187847_100157522	3300017948	Peatland	MDMESRLRKLESRYRVAMNAALAAKAHYLALTGEPGATPAAIECARARWQQLDARKRGIAARMGEVEDYELGARA
Ga0187817_100599961	3300017955	Freshwater Sediment	VDIDIRLRALEFRYRAVLRAASAAKANYRALAGEPSTTPFAIERAKCRWQQLDVRKRTIGAQLGDVEELEQGETL
Ga0187817_104065161	3300017955	Freshwater Sediment	VDIEARLRKLEIRYRAALSTAAAAKANYLALAGDSSAISFAIERAKAQWQQLDARKRTIAAQMGELEELEQDSTL
Ga0187817_105728531	3300017955	Freshwater Sediment	VDIEVRLRALEFRYRAVLSATTAAKANYLALAGEPGATPYAIGRAKAQWQQLDLRKRTLAAQMGEVEDFEQDALL
Ga0187855_106603101	3300018038	Peatland	VDIEVRLHALEFRYRAVLSATSAAKANYLALAGEPSTTPFAIERAKSRWQQLDVRKRTIAAQMGDLEEPESDATL
Ga0187862_104172851	3300018040	Peatland	MDIETRLRKLESRYRAALSATVAAKATYLALAGEPSATPHAIERAKSLWQQLDARKRTIAAQMGELEALEDTNY
Ga0187887_107648081	3300018043	Peatland	MDMETRLLKLESRYRDALGATVAAKAHYLALAGEASATPAAIERARARWRQLEARKRGIAARMGEVEDSEHAFG
Ga0187858_104236271	3300018057	Peatland	VDIKARLRKLQSLHRTALSATVAAKANYFALADEPSSTPYAIERAKTLWQRLDARKRAIAAQLGDIEELDSTK
Ga0179592_105083131	3300020199	Vadose Zone Soil	MDIEARLRKLESRYRAALSATVAAKAHYLALAGEPSATPAAVERADALWKQLESRKRTIAAQMGELEALEDADAS
Ga0210389_115307842	3300021404	Soil	MDIEARLRQLESRYRSTLSAAVAAKANYLALIGEPSATPAAVERAKAAWQKIDVRKRAIAARMGEIEEMDQIASA
Ga0210394_100137693	3300021420	Soil	MDIEARLRKLESRYRAALSAAVAAKAHYLALAGEPSATPTAIERAKSRWQQLESGKKAIAARMDEVERLEHDALA
Ga0210394_100177115	3300021420	Soil	MDIETRLRKLESRYRAALSAAVAAKAHYLALTGEPNSTPAAIESAKSRWQQLDSRKRTIAAQMGELEALEDAG
Ga0210390_100224855	3300021474	Soil	MDIEVRLRRLESRYRAALSAAVAAKANYWALAGEPSASTATIERAKSRWEQLESRKRSITAQMGELEALEDG
Ga0208589_10085122	3300025634	Arctic Peat Soil	MDIESRLRKLESRYRAALSASVAAKSHYLALAGESGATPSAIRRAHHQWQQLESRKKLIVERMGEVERLEQDVLS
Ga0209890_100721782	3300026291	Soil	MDIEVRFRKLESRYRTALSAAVAARANYLALAGVSGVTPAAVERAKSLWQQIEFRKRIIVAKMAELEALEDAAS
Ga0209648_107025102	3300026551	Grasslands Soil	MDIEARLRKLESRYRTALSAAVAAKAHYLALAGEPSATPAAVERANALWKQLESRKRTIAAQMGELEALEDADAS
Ga0209588_11470201	3300027671	Vadose Zone Soil	MDIEARLRKLESRYRTALSAAVAAKAHYLALAGEPSATPAAVERANALWKQLESRKRTIAAQMGELEALEDAS
Ga0209656_102511152	3300027812	Bog Forest Soil	GRSLTAARMSATENLDAMDMESRLRKLESRYRDALGATVAAKAHYLALAGEPSATPAAIERARAHWRQLEARKRGIAARMGEVEDSEHAFG
Ga0209040_1000384013	3300027824	Bog Forest Soil	MSATENLDAMDMESRLRKLESRYRDALGATVAAKAHYLALAGEPSATPAAIERARAHWRQLEARKRGIAARMGEVEDSEHAFG
Ga0209040_100075671	3300027824	Bog Forest Soil	MDIENRLRKLESRYRSVLSATVAAKANYLALAGEPCATPAAVERAQSLWQQVDARKRAIAVQMDELETL
Ga0209517_103425031	3300027854	Peatlands Soil	VDIEVRLRALEFRYRAILSATSAAKANYLALAGEPSTTPFAIERAKLRWQHLDVRKRTIGAQLGEVQELEQGETL
Ga0209415_100395544	3300027905	Peatlands Soil	MTATENLDAMDIESRLRRLESRYRDALGATVAAKAHYLALAGEPSATPAAIESARARWRQLEARKRGIAARMGEVEDSEHAFG
Ga0209415_101212312	3300027905	Peatlands Soil	VDIEVRLRKLEFRYRAVLSATVAAKANYLALVGEPSATPFAIERAKVHWQQLDARKRTIAAQMGELEELEPVATL
Ga0209698_102678982	3300027911	Watersheds	MDIEQRLRKLESKYRATLSAAVAAKAHYLALAGEPSATPRAIEHAKVHWHELEVRKKAVAAQMGELEMLEDSMG
Ga0302233_102974321	3300028746	Palsa	MDIETRLRKLEARYRAASLSADAAKAHCLALAGEGSAPPAALERAQVQWKEFDLHKRAIAAQLGELEELDITNG
Ga0302234_102222361	3300028773	Palsa	MSIEARLRRLELRYRGALSAAVAAKANYLALAGEACATPYAIERAKAFWQEFEGRKRAIVAQMGELEALAD
Ga0302228_104353281	3300028808	Palsa	LRKLEARYRAASLSADAAKAHCLALAGEGSAPPAALERAQVQWKEFDLHKRAIAAQLGELEELDITNG
Ga0311334_117138262	3300029987	Fen	MDVELRLRKLESKYRATLSAAVAAKAHHLALVGEPSAMPRAIEQAKMRWEELEARKKAIVAQMGQLEMLEDSIG
Ga0302177_100269054	3300030053	Palsa	MSIEARLRRLELRYRGALSAAVAAKANYLALAGEACATPYAIERAKAFWQEFEGRKRAIVAQMGELEALADTAY
Ga0265762_10860542	3300030760	Soil	MDIEARLRRLESRYRSALSASVAAKANYLALAGEPCATPYAIERAKALWQEFDGRKRAIAAQMGELEALADAAY
Ga0074013_117066452	3300030907	Soil	DNHWETAMDIEVRLRKLESRYRAALSATVAAKAHYLSLVSESGATPAAVERANAQWQQLELRKRAIVAQMGELEALEDTVG
Ga0302324_1008080562	3300031236	Palsa	MDIEARLRKLEARYRGALSAAVAAKANYLALAGEPSATPYAIERAKALWLEFDMRKRGIAAQMGELEALADAAY
Ga0310686_1008968433	3300031708	Soil	MDIEARLRRLESRYRGALSAAVAAKANYSALAGEPCATPYAIERAKALWQQFDTRKRTIAARMGELEALADTAY
Ga0310686_1032332804	3300031708	Soil	MDIESRLRKLESRYRAALSASVAAKSHYLALAGEPSTTPSAVRRAHDQWQQLELRKKLIVERMDQVERLEQDATS
Ga0310686_1033883058	3300031708	Soil	MDIEARLRSLESRYRSALSASVAAKANYLALAGEPSATPYAIERAKALWQKFDTRKRAIAAQMGELEALADAAY
Ga0310686_1044693692	3300031708	Soil	MDIEFRLRKLESRYRAALSASVAAKSHYLALAGESGATPTAVRRARDQWQHLESRKKLIVERMGEVERLEQDAVS
Ga0310686_1044788141	3300031708	Soil	MDIEFRLRKLESRYRAALSASVAAKSHYLALAGESGATPTAVRRAHDQWQQLESRKKLIVERMGEVERLEQDAVS
Ga0310686_1086131601	3300031708	Soil	MDIEARVRRLESHYRAALSATVAAKANYLALAGEPSARPIAIERAKSLWQQLGARKRTIVAQMAELEALEDAAY
Ga0302321_1002392812	3300031726	Fen	MDIELELRKLESKYRATLSAAVAAKAHYLALAGEPSATPRAVELAKLNWQERDARKKRLAARMGELEMLEDSIG
Ga0311301_102986624	3300032160	Peatlands Soil	MDIEIRLRALEFRYRAVLSATSAAKANYLALAGEPSTTHFAIERAKSRWQQLDVRKRTIAAQMGDLEELEQDSTL
Ga0311301_103084454	3300032160	Peatlands Soil	MDIEIRLRKLELRYRVVLSASVAAKANYLALIGEPSATLFAIDSAKNHWQQLDARKRTIAAQMGELEELEQDATL
Ga0311301_105069712	3300032160	Peatlands Soil	MDIEARLRKLEFRYRALLSATVAAKANYLALVGEPSATAFAIERAKSQWQQLDARKRTIAAQMGELEELEQVATL
Ga0370484_0029291_361_621	3300034125	Untreated Peat Soil	MLFTIEGETPKLDIEARLRKLEFRYRALLSATVAAKANFLALAGEPSATAFAIERAKSQWQQLDARKRTIAAQMGELEELEQVATL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093392

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences