NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F093373

Metagenome Family F093373

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F093373
Family Type Metagenome
Number of Sequences 106
Average Sequence Length 39 residues
Representative Sequence MKTSVINQIKTLLGMEVKLETMKLMDGITIFEADAFE
Number of Associated Samples 76
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 98.11 %
% of genes from short scaffolds (< 2000 bps) 91.51 %
Associated GOLD sequencing projects 74
AlphaFold2 3D model prediction Yes
3D model pTM-score0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (46.226 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment
(16.981 % of family members)
Environment Ontology (ENVO) Unclassified
(40.566 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(42.453 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52
1Ga0049080_100084721
2Ga0049080_103167062
3Ga0075124_102925063
4Ga0070748_12704753
5Ga0099851_11847733
6Ga0099851_13606473
7Ga0102855_11906102
8Ga0102859_11176884
9Ga0114340_12205512
10Ga0114343_11815711
11Ga0114363_12095791
12Ga0105099_100056261
13Ga0105103_108253131
14Ga0105103_109394212
15Ga0114977_101481591
16Ga0105102_108274332
17Ga0105097_100771555
18Ga0105097_101436971
19Ga0105097_103918023
20Ga0105097_108254412
21Ga0114976_103079421
22Ga0153805_10835961
23Ga0157203_10421101
24Ga0157203_10518332
25Ga0157203_10532472
26Ga0164293_107076281
27Ga0177922_106277582
28Ga0177922_109496013
29Ga0181343_10811934
30Ga0181358_10389254
31Ga0181349_11082511
32Ga0181349_12202423
33Ga0181346_12581342
34Ga0181346_12607222
35Ga0181346_12778481
36Ga0206127_10768051
37Ga0208364_10201724
38Ga0194059_10421571
39Ga0222713_101131561
40Ga0222712_103704764
41Ga0222712_105776531
42Ga0244777_104994371
43Ga0208644_10697941
44Ga0208800_10307503
45Ga0208925_1085741
46Ga0208951_11502063
47Ga0209704_10872471
48Ga0209492_10027811
49Ga0209492_12272823
50Ga0247836_10526661
51Ga0209442_12450861
52Ga0209246_1000174011
53Ga0209246_100393644
54Ga0209246_100958475
55Ga0209246_103503922
56Ga0209353_104066112
57Ga0209229_101053404
58Ga0209354_102761031
59Ga0209354_103240052
60Ga0209990_103435653
61Ga0209550_104620373
62Ga0307378_109083483
63Ga0307378_114166311
64Ga0307376_102427395
65Ga0307377_105775981
66Ga0315291_114698531
67Ga0315293_110238591
68Ga0315293_111403722
69Ga0315907_102671221
70Ga0315907_104561241
71Ga0315288_109760141
72Ga0315288_114202911
73Ga0315900_110307212
74Ga0315290_116504082
75Ga0315909_110110932
76Ga0315297_117128991
77Ga0315294_111053791
78Ga0315294_113741311
79Ga0315294_114217792
80Ga0315294_114252431
81Ga0315294_115597341
82Ga0315901_109788411
83Ga0315274_115568202
84Ga0315289_111983261
85Ga0315284_122424051
86Ga0315902_100308007
87Ga0315903_102989451
88Ga0315277_116849451
89Ga0315277_117760002
90Ga0315287_123076861
91Ga0334986_0457375_517_636
92Ga0334985_0121830_1682_1813
93Ga0334985_0362297_763_882
94Ga0335005_0296496_3_119
95Ga0335023_0499165_3_122
96Ga0335024_0461534_510_623
97Ga0334987_0233954_1131_1265
98Ga0335019_0847736_1_108
99Ga0335022_0270263_2_109
100Ga0335027_0513547_2_133
101Ga0335027_0627265_1_108
102Ga0335027_0880922_2_112
103Ga0335035_0050110_2_106
104Ga0335056_0489857_512_649
105Ga0335061_0011717_4448_4552
106Ga0335013_0342909_1_135
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 16.92%    β-sheet: 9.23%    Coil/Unstructured: 73.85%
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5101520253035MKTSVINQIKTLLGMEVKLETMKLMDGITIFEADAFESequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains




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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
53.8%46.2%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

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Freshwater Sediment
Freshwater
Freshwater Lake
Freshwater Lentic
Freshwater And Sediment
Freshwater
Freshwater, Plankton
Anoxic Zone Freshwater
Freshwater Lake
Freshwater
Sediment
Freshwater
Freshwater
Surface Ice
Aqueous
Estuarine
Estuarine Water
Seawater
Lake Water
Soil
10.4%16.0%2.8%17.0%2.8%17.0%2.8%6.6%3.8%4.7%2.8%3.8%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
Ga0049080_1000847213300005582Freshwater LenticMKTSVINQIKTLLGMEVKLETMKLMDGITIFEADAF
Ga0049080_1031670623300005582Freshwater LenticMKTSVINQIKTLLGMEVKLETMKLMDGITIFEADA
Ga0075124_1029250633300005936Lake WaterMKEKSIINQVKTLLGMEVSLETMTLENGTVLEAEAFEAGNE
Ga0070748_127047533300006920AqueousMNVINEIKTLLGMEVKLAQMKLVDGVTVIEAEVFE
Ga0099851_118477333300007538AqueousMSNVINQIKTLLGMEVKLAQMALENGTIIEAEVFEA
Ga0099851_136064733300007538AqueousMSVINEIKTLLGMEVKLAQMKLMDGMTVIEADSFQL
Ga0102855_119061023300007647EstuarineMKNSTINKIKSLLGMEVKLEQMMLIDGTTVLEADAFEMDN
Ga0102859_111768843300007708EstuarineMKTSVINQIKTLLGMEVKLETMKLMDGITIFEADAFEMDK
Ga0114340_122055123300008107Freshwater, PlanktonMKNSLINQIKTLLGMEVKLETMKLSDGVTVLEAEMFENKK*
Ga0114343_118157113300008110Freshwater, PlanktonMKNSLINQIKTLLGMEVKLETMKLSDGVTVLEAEMFEAGN
Ga0114363_120957913300008266Freshwater, PlanktonMKNSLINQIKTLLGMEVKLETMKLSDGVTVLEAEM
Ga0105099_1000562613300009082Freshwater SedimentMNVINEIKTLLGMEVKLAQMKLKDGVTIIEAEAFEM
Ga0105103_1082531313300009085Freshwater SedimentMKNSLINQIKTLLGMEVKLEQMKLMDGVTVLEADM
Ga0105103_1093942123300009085Freshwater SedimentMKNSLINQIKTLLGMEVKLEQMKLMDGVSILEAESFEAG
Ga0114977_1014815913300009158Freshwater LakeMKTSVINQIKTLLGMEVKLETMKLADGITIFEADA
Ga0105102_1082743323300009165Freshwater SedimentMNVLNEIKTLLGMEVNLAQMKLKDGVTVIEAEMFEA
Ga0105097_1007715553300009169Freshwater SedimentMNVINEIKTLLGMEVKLAQMKLEDGVTVIEAEAFE
Ga0105097_1014369713300009169Freshwater SedimentMNVINEIKTLLGMEVKLAQMKLKDGVTVIEADAFETDNA
Ga0105097_1039180233300009169Freshwater SedimentMNVINEIKTLLGMEVKLAQMKLKDGVTVIEADAFEM
Ga0105097_1082544123300009169Freshwater SedimentMKNSLINQIKTLLGMEVKLEQMKLMDGVSIIEAESFEAGSE
Ga0114976_1030794213300009184Freshwater LakeMKTSVINQIKTLLGMEVKLETMKLADGITIFEADAFEM
Ga0153805_108359613300012013Surface IceMKTSVINQIKTLLGMEVKLETMKLMDGITIFEADAFEMDKE
Ga0157203_104211013300012663FreshwaterMKNSTVNKIKALLGMEVSLEQMKLMDGITILEADAF
Ga0157203_105183323300012663FreshwaterMKNSTVNKIKALLGMEVKLEQMKLMDGITILEADAFEMDNE
Ga0157203_105324723300012663FreshwaterMKNSTVNKIKSLLGMEVKLEQMMLMDGITILEADAFEMDNE
Ga0164293_1070762813300013004FreshwaterMKNSLINQIKTLLGMEVKLEQMKLVDGVTVLEADSFEAGNE
Ga0177922_1062775823300013372FreshwaterMKNSLINQIKTLLGMEVKLEQMKLMDGVTVLEADMFEAGNE
Ga0177922_1094960133300013372FreshwaterMKTNVLTQIKQLLGMEVKLEMMKLADGMTMIEADSFEPEMAV
Ga0181343_108119343300017766Freshwater LakeMKNSLINQIKTLLGMEVKLETIKLSDGVTVLEAEMFEAG
Ga0181358_103892543300017774Freshwater LakeMNVINEIKTLLGMEVKLAQMKLKDGVTVLEADAFETDNA
Ga0181349_110825113300017778Freshwater LakeMKTSVINQIKTLLGMEVKLETMKLMDGITIFEADTFETDKEVFI
Ga0181349_122024233300017778Freshwater LakeMKTSVINQIKTLLGMEVKLETMKLMDGITIFEADAFETV
Ga0181346_125813423300017780Freshwater LakeMNVVNQIKELLGMDVKLAQMKLMDGVTVIEAETFE
Ga0181346_126072223300017780Freshwater LakeMKTSVINQIKTLLGMEVKLETMKLMDGITIFEADTFETD
Ga0181346_127784813300017780Freshwater LakeMKTSVINQIKTLLGMEVKLETMKLMDGITIFEADAFEMDN
Ga0206127_107680513300020169SeawaterMNKIDQIKTLLGMEVKLETMKLVNGTEIEAEVFEA
Ga0208364_102017243300020533FreshwaterMKNSLINQIKTLLGMEVKLEQMKLMDGVTVLEADMFEAG
Ga0194059_104215713300021600Anoxic Zone FreshwaterMKTSVINQIKTLLGMEVKLMQMKMADGVTIVEADKFEMDNEVFVVT
Ga0222713_1011315613300021962Estuarine WaterMKNSTINKIKALLGMEVSLEMMKLADGQTVLEADAFEM
Ga0222712_1037047643300021963Estuarine WaterMNVINEIKTLLGMEVKLAQMKLKDGVTILEADAFEVD
Ga0222712_1057765313300021963Estuarine WaterMKNSTINKIKALLGMEVSLEMMKLADGVTILEADAFEMD
Ga0244777_1049943713300024343EstuarineMKNSTINKIKSLLGMEVKLEQMMLIDGTTVLEADAFEMDNEVFIV
Ga0208644_106979413300025889AqueousMKDKSVINQIKTLLGLEVKLEQMTLENGTVIEADS
Ga0208800_103075033300027193EstuarineMNVINEIKTLLGMEVKLAQMKLEDGVTVIEAEVFEAEA
Ga0208925_10857413300027203EstuarineMKNSTINKIKSLLGMEVKLEQMMLIDGTTVLEADAFEMDNEVFI
Ga0208951_115020633300027621Freshwater LenticMKTSVINQIKTLLGMDVKLEQRKMADGVTLIEADAF
Ga0209704_108724713300027693Freshwater SedimentMSNVINQIKTLLGMEVKLAQMALENGTIIEAEVFEAGASVF
Ga0209492_100278113300027721Freshwater SedimentMNVINEIKTLLGMEVKLAQMKLKDGVTVIEADAFE
Ga0209492_122728233300027721Freshwater SedimentMKNSLINQIKTLLGMEVKLEQMKLMDGVTVLEADMFEA
(restricted) Ga0247836_105266613300027728FreshwaterMKNSLINQIKTLLGMEVKLEQMKLADGVTVFEADTFEPEMEIVIVTEDE
Ga0209442_124508613300027732Freshwater LakeMNVINEIKTLLGMEVKLAQMKLKDGVTVIEADAFEMDNNV
Ga0209246_10001740113300027785Freshwater LakeMNVINEIKTLLGMEVKLAQMKLKDGVTVIEADAFEMDN
Ga0209246_1003936443300027785Freshwater LakeMKTSVINQIKTLLGMEVKLETMKLMDGITIFEADTFE
Ga0209246_1009584753300027785Freshwater LakeMKTSVINQIKTLLGMEVKLETMKLMDGITIFEADTF
Ga0209246_1035039223300027785Freshwater LakeMKTSVINQIKTLLGMDVKLEQRKMADGVTLIEADAFEMDNEVFVIT
Ga0209353_1040661123300027798Freshwater LakeMKTSVINQIKTLLGMEVKLETMKLMDGITIFEADTFETDKEVF
Ga0209229_1010534043300027805Freshwater And SedimentMSNVINQIKTLLGMEVKLAQMALENGTIIEAEVFE
Ga0209354_1027610313300027808Freshwater LakeMNIINQIKTLLNMEVKLEQLRLADGMTVLEADSFEPEMEVF
Ga0209354_1032400523300027808Freshwater LakeMKTSVINQIKTLLGMEVKLETIKLIDGITIFEADTFETDKEVFIV
Ga0209990_1034356533300027816Freshwater LakeMLNMKKNVINQIKELLGMEVKLATMKLSDGVTILEAEMFE
Ga0209550_1046203733300027892Freshwater LakeMNVINEIKTLLGMEVKLAQMKLKDGVTVLEADAFETDNAV
Ga0307378_1090834833300031566SoilMKTSVINQIKTLLGMDVKLEQRKMADGVTLIEADA
Ga0307378_1141663113300031566SoilMKTSVINQIKTLLGMEVKLETIKLIDGITIFEADTFETEKEIFI
Ga0307376_1024273953300031578SoilMKTSVINQIKTLLGMEVKLETIKLIDGITIFEADSFEAEKE
Ga0307377_1057759813300031673SoilMKTSVINQIKTLLGMEVKLETIKLIDGITIFEADTFETDKEVF
Ga0315291_1146985313300031707SedimentMKTSVINQIKTLLGMEVKLETMKLMDGITIFEADAFETD
Ga0315293_1102385913300031746SedimentMKTSVINQIKTLLGMEVKLETMKLMDGITIFEADAFETDKE
Ga0315293_1114037223300031746SedimentMKTSVINQIKTLLGMEVKLETMKLMDGITIFEADAFET
Ga0315907_1026712213300031758FreshwaterMKNSLINQIKTLLGMEVNLEQMKLADGVTVLEADMFE
Ga0315907_1045612413300031758FreshwaterMKNSLINQIKTLLGMEVKLETMKLSDGVTVLEAEMFEAG
Ga0315288_1097601413300031772SedimentMKTSVINQIKTLLGMEVKLETMKLMDGITIFEADTFET
Ga0315288_1142029113300031772SedimentMKTSVINQIKTLLGMEVKLETIKLMDGITIFEADTFET
Ga0315900_1103072123300031787FreshwaterMKNSLINQIKTLLGMEVKLEQMKLMDGVTVLEADSFEAG
Ga0315290_1165040823300031834SedimentMKTSVINQIKTLLGMEVKLETMKLMDGITIFEAEA
Ga0315909_1101109323300031857FreshwaterMKNSLINQIKTLLGMEVKLETMKLSDGVTVLEAEMF
Ga0315297_1171289913300031873SedimentMKTSVINQIKNLLGMEVKLEQRKMADGVTLIEADAFEIENEVFVITE
Ga0315294_1110537913300031952SedimentMKTSVINQIKTLLGMEVKLETMKLMDGITIFEADT
Ga0315294_1137413113300031952SedimentMKTSVINQIKTLLGMEVKLETMKLMDGITIFEADAFETDKEV
Ga0315294_1142177923300031952SedimentMKTSVINQIKTLLGMDVKLEQRKMADGVTLIEADT
Ga0315294_1142524313300031952SedimentMKTSVINQIKTLLGMEVKLETMKLMDGITIFEADTFETDK
Ga0315294_1155973413300031952SedimentMKTSVINQIKTLLGMEVKLETMKLMDGITIFEADTFETDKE
Ga0315901_1097884113300031963FreshwaterMKNSLINQIKTLLGMEVKLEQMKLMDGVTVLEADMFEAGNEIFVVTED
Ga0315274_1155682023300031999SedimentMKTSVINQIKTLLGMDVKLEQRKMADGVTLIEADAFEM
Ga0315289_1119832613300032046SedimentMKTSVINQIKTLLGMDVKLEQRKMADGVTLIEADAFEMDNEVFVI
Ga0315284_1224240513300032053SedimentMKTSVINQIKTLLGMEVKLETMKLMDGITIFEADAFEM
Ga0315902_1003080073300032093FreshwaterMKTNVLTQIKQLLGMEVKLEMMKLADGMTMIEADSF
Ga0315903_1029894513300032116FreshwaterMKNSLINQIKTLLGMEVKLETMKLSDGVTVLEADMFEAG
Ga0315277_1168494513300032118SedimentMKTSVINQIKTLLGMEVKLETMKLMDGITIFEADAFE
Ga0315277_1177600023300032118SedimentMKTSVINQIKTLLGMEVKLETIKLIDGITIFEADAFET
Ga0315287_1230768613300032397SedimentMKTSVINQIKNLLGMEVKLEQRKMADGVTLIEADAFEIENEVF
Ga0334986_0457375_517_6363300034012FreshwaterMKNSLINQIKTLLGMEVKLEQMKLMDGVTVLEADMFEAGN
Ga0334985_0121830_1682_18133300034018FreshwaterMKNSLINQIKTLLGMEVKLEQMKLMDGVSILEAESFEAGSEVFI
Ga0334985_0362297_763_8823300034018FreshwaterMNVVNQIKELLGMEVKLAQMKLMDGVTVIEAEAFEPEMAV
Ga0335005_0296496_3_1193300034022FreshwaterMKTSVINQIKTLLGMEVKLETMKLMDGITIFEADAFEMD
Ga0335023_0499165_3_1223300034050FreshwaterMKNSLINQIKTLLGMEVKLEQMMLADGVTVLEADSFEPEM
Ga0335024_0461534_510_6233300034051FreshwaterMSNVINQIKTLLGMEVKLAQMALENGTIIEAEMFEAGA
Ga0334987_0233954_1131_12653300034061FreshwaterMLNMKKNVINQIKELLGMEVKLATMKLSDGMTILEAEVFEAGAEV
Ga0335019_0847736_1_1083300034066FreshwaterMKNSLINQIKTLLGMEVKLEQMKLMDGVTVLEADMF
Ga0335022_0270263_2_1093300034095FreshwaterMNVREAINTIKTYLNMEVKLAKMMLVDGVTVLEANE
Ga0335027_0513547_2_1333300034101FreshwaterMKNSLINQIKTLLGMEVKLEQMKLMDGVTVLEADMFEAGNEIFV
Ga0335027_0627265_1_1083300034101FreshwaterMKNSLINQIKTLLGMEVKLEQMKLMDGVTVLEADSF
Ga0335027_0880922_2_1123300034101FreshwaterMKNSLINQIKTLLGMEVKLETMKLSDGVTVLEAEMFE
Ga0335035_0050110_2_1063300034105FreshwaterMNIINQIKTLLNMEVKLEQMKLADGMTVLEADSFA
Ga0335056_0489857_512_6493300034120FreshwaterMKNSLINQIKTLLGMEVKLEQMKLMDGVTVLEADMFEAGNEIFVVT
Ga0335061_0011717_4448_45523300034168FreshwaterMNIINQIKTLLNMEVKLEQMKLADGMTVLEADSFE
Ga0335013_0342909_1_1353300034284FreshwaterMKNSLINQIKTLLGMEVKLEQMKLMDGVTVLEADMFEAGNEIFVV


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