Metagenome Family F093363

Overview

Basic Information

• Family ID: F093363
• Family Type: Metagenome
• Number of Sequences: 106
• Average Sequence Length: 53 residues
• Representative Sequence: PDFVPLVPENRAASRTAAIEIEIGGAVLRADAGIDLAFLGKIVRLLKAT
• Number of Associated Samples: 94
• Number of Associated Scaffolds: 106

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 0.94 %
• % of genes near scaffold ends (potentially truncated): 89.62 %
• % of genes from short scaffolds (< 2000 bps): 93.40 %
• Associated GOLD sequencing projects: 88
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (97.170 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (16.981 % of family members)
• Environment Ontology (ENVO): Unclassified (37.736 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (55.660 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 16.88%
  β-sheet: 12.99%
  Coil/Unstructured: 70.13%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF05717	TnpB_IS66	76.42
PF13007	LZ_Tnp_IS66	16.04
PF01527	HTH_Tnp_1	1.89
PF13817	DDE_Tnp_IS66_C	1.89
PF13808	DDE_Tnp_1_assoc	0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG3436	Transposase	Mobilome: prophages, transposons [X]	76.42

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.17 %
Unclassified	root	N/A	2.83 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.17 %
Unclassified	root	N/A	2.83 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.17 %
Unclassified	root	N/A	2.83 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	94.34 %
Unclassified	root	N/A	2.83 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	94.34 %
Unclassified	root	N/A	2.83 %

Level 6

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	34.91 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	33.96 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.83 %
Unclassified	root	N/A	2.83 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	1.89 %

Level 7

Name	Rank	Taxonomy	Distribution
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	33.02 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	27.36 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.83 %
Unclassified	root	N/A	2.83 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	1.89 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.94 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.94 %

Level 8

Name	Rank	Taxonomy	Distribution
Defluviicoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus	33.02 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	23.58 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.83 %
Unclassified	root	N/A	2.83 %
unclassified Caulobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae	1.89 %
Nitrospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum	0.94 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.94 %

Level 9

Name	Rank	Taxonomy	Distribution
Defluviicoccus vanus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	33.02 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3.77 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	3.77 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.83 %
Unclassified	root	N/A	2.83 %
Caulobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae → Caulobacteraceae bacterium	1.89 %
Nitrospirillum amazonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	0.94 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.94 %

Level 10

Name	Rank	Taxonomy	Distribution
Defluviicoccus vanus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	33.02 %
Bradyrhizobium sp. Ec3.3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	3.77 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3.77 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.83 %
Unclassified	root	N/A	2.83 %
Caulobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae → Caulobacteraceae bacterium	1.89 %
Nitrospirillum amazonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	0.94 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.94 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001205|C688J13580_1010679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1019
3300001686|C688J18823_10319253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1016
3300005174|Ga0066680_10228475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1179
3300005330|Ga0070690_101226961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	599
3300005331|Ga0070670_100919613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	793
3300005331|Ga0070670_101972198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	538
3300005339|Ga0070660_100553389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	960
3300005340|Ga0070689_100237299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1501
3300005343|Ga0070687_100668891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	722
3300005344|Ga0070661_100220455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1455
3300005354|Ga0070675_101203421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	698
3300005365|Ga0070688_101139682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	625
3300005366|Ga0070659_101922197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	531
3300005456|Ga0070678_101405025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	652
3300005535|Ga0070684_100095025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2655
3300005535|Ga0070684_100767595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	900
3300005544|Ga0070686_100931463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	709
3300005547|Ga0070693_100625808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	780
3300005548|Ga0070665_101813229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	617
3300005564|Ga0070664_102404170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	500
3300005615|Ga0070702_101468945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	560
3300005718|Ga0068866_10866828	All Organisms → cellular organisms → Bacteria	633
3300006954|Ga0079219_11453867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	617
3300009137|Ga0066709_103806842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	548
3300009148|Ga0105243_11065982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	815
3300009177|Ga0105248_12845754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	552
3300010037|Ga0126304_11207261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	519
3300010044|Ga0126310_11036458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	648
3300010044|Ga0126310_11053845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	644
3300010045|Ga0126311_10040697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2930
3300010321|Ga0134067_10359847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	575
3300010371|Ga0134125_10231514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	2054
3300010371|Ga0134125_11030283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	902
3300010396|Ga0134126_12156456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae → Caulobacteraceae bacterium	608
3300010396|Ga0134126_13050718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	505
3300010400|Ga0134122_12109167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	605
3300012212|Ga0150985_116371482	Not Available	729
3300012469|Ga0150984_123038371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	560
3300012899|Ga0157299_10123329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	700
3300012901|Ga0157288_10329092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	546
3300012908|Ga0157286_10239352	Not Available	634
3300012909|Ga0157290_10205833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	672
3300012910|Ga0157308_10308434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	582
3300012915|Ga0157302_10178010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	746
3300012951|Ga0164300_10414586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	744
3300012955|Ga0164298_11157443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	583
3300012957|Ga0164303_10071443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1621
3300012960|Ga0164301_10648342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	787
3300012977|Ga0134087_10192390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	909
3300012988|Ga0164306_10516347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	922
3300013296|Ga0157374_10578745	Not Available	1132
3300013296|Ga0157374_12385430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	556
3300013297|Ga0157378_10998389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	871
3300013308|Ga0157375_10265254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1879
3300013308|Ga0157375_11801121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	726
3300014325|Ga0163163_13030220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	524
3300014487|Ga0182000_10132064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	881
3300014487|Ga0182000_10417517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	600
3300014488|Ga0182001_10713413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	501
3300014497|Ga0182008_10321196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	815
3300014968|Ga0157379_12120279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	557
3300015077|Ga0173483_10752824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	557
3300015261|Ga0182006_1119852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	915
3300015262|Ga0182007_10021158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2314
3300015371|Ga0132258_10756102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2449
3300015372|Ga0132256_100941250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	980
3300015374|Ga0132255_100332576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2195
3300018433|Ga0066667_10503978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	998
3300018476|Ga0190274_10455150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1263
3300018481|Ga0190271_11230544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	870
3300019356|Ga0173481_10122848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1033
3300019356|Ga0173481_10727380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	539
3300019362|Ga0173479_10060271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1280
3300019377|Ga0190264_11698291	All Organisms → cellular organisms → Bacteria	562
3300021067|Ga0196978_1027877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1043
3300021184|Ga0196959_10011543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1485
3300021445|Ga0182009_10336382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	768
3300023102|Ga0247754_1025222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1318
3300025795|Ga0210114_1021282	All Organisms → cellular organisms → Bacteria	1393
3300025901|Ga0207688_10378913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	875
3300025903|Ga0207680_11293353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	519
3300025907|Ga0207645_10210957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1279
3300025921|Ga0207652_10125630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2284
3300025926|Ga0207659_10408904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1136
3300025927|Ga0207687_10806786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	801
3300025931|Ga0207644_11064619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	679
3300025932|Ga0207690_10517498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	967
3300025945|Ga0207679_12146510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	507
3300025949|Ga0207667_12233741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	504
3300025972|Ga0207668_10543402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1005
3300025972|Ga0207668_11789325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	554
3300026023|Ga0207677_10673466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	915
3300026035|Ga0207703_10899696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	847
3300026035|Ga0207703_11714227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	604
3300026116|Ga0207674_10852486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	879
3300026121|Ga0207683_11133526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	725
3300027514|Ga0208338_1013558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	564
3300027750|Ga0209461_10086925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	691
3300028379|Ga0268266_11913995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	567
3300028381|Ga0268264_11611862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	660
3300031996|Ga0308176_11509037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	716
3300032017|Ga0310899_10158573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	972
3300034143|Ga0334961_097285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae → Caulobacteraceae bacterium	520
3300034268|Ga0372943_0272395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	1069
3300034817|Ga0373948_0019339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1288
3300034817|Ga0373948_0093162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	701

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	54.72%
Host-Associated	Host-Associated	45.28%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	53.77%
Plants	Host-Associated → Plants	45.28%
Aquatic	Environmental → Aquatic	0.94%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere	31.13%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.26%
Marine	Environmental → Aquatic → Marine	0.94%
Roots	Host-Associated → Plants → Roots	0.94%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.94%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.62%
Soil	Host-Associated → Plants → Rhizosphere → Soil	19.81%
Loam	Environmental → Terrestrial → Soil → Loam	12.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.32%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.83%
Sand	Environmental → Terrestrial → Soil → Sand	1.89%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.89%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.94%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	19.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.32%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.89%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.89%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.94%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.94%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.94%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.94%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	7.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.66%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	4.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.77%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.77%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.89%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.89%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	1.89%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.94%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.94%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.94%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.94%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.94%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300001205	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental
3300012212	Combined assembly of Hopland grassland soil	Host-Associated
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental
3300015261	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG	Host-Associated
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated
3300015372	Soil combined assembly	Host-Associated
3300015374	Col-0 rhizosphere combined assembly	Host-Associated
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental
3300021067	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20-13C	Environmental
3300021184	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20	Environmental
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental
3300023102	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5	Environmental
3300025795	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2 (SPAdes)	Environmental
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated
3300027514	Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN91 (SPAdes)	Environmental
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental
3300034143	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 57SNS	Environmental
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J13580_10106793	3300001205	Soil	RLYMWRRELRSGALGNTGALGLDFVPVVAERRSASGTGAIEIEIGGAVLRAGTGVDLAFLGRIVRLLKAT*
C688J18823_103192533	3300001686	Soil	RELRSGALANRGIAMPDFVPLVPENRAASRTAAIEIEIGGAVLRADAGIDLAFLGRIVRLLKAT*
Ga0066680_102284751	3300005174	Soil	LDFVPVVAERRSASGTGAIEIEIGGAVLRAGTGVDLAFLGRIVRLLKAT*
Ga0070690_1012269612	3300005330	Switchgrass Rhizosphere	SGALANAGAGLPDFVPIVAESRAVSRTAAIEIEIGGAVLRADAGIELTFLGRIVRLLKAT
Ga0070670_1009196133	3300005331	Switchgrass Rhizosphere	VAERRSASGTGAIEIEIGGAVLRAGTGVDLAFLGRIVRLLKAT*
Ga0070670_1019721981	3300005331	Switchgrass Rhizosphere	GALANRGIAMPDFVPLVPENRVACRTAAIEIEIGGAVLRADAGIDLAFLGKIVRLLKAT*
Ga0070660_1005533893	3300005339	Corn Rhizosphere	SGALANPGAPVPDFVPIVSESRAVSRTAVIEIEIGGAVLRADASIDLGFLGKIVRLLKAT
Ga0070689_1002372994	3300005340	Switchgrass Rhizosphere	LRSGALANRGIAMPDFVPLVPENRAASRTAAIEIEIGGAVLRADAGIDLAFLGKIVRLLKAT*
Ga0070687_1006688912	3300005343	Switchgrass Rhizosphere	NQLYMWRRELRSGALANRGIAMPDFVPLVPENRAASRTAAIEIEIGGAVLRADAGIDLSFLGKIVRLLKAT*
Ga0070661_1002204553	3300005344	Corn Rhizosphere	VPIVPENRAASRAAVIEIEIGGAVLRADAGADLAFLGKIIRLLKTT*
Ga0070675_1012034212	3300005354	Miscanthus Rhizosphere	PDFVPIVAESRAVSRTAAIEIEIGGAVLRADAGIELTFLGRIVRLLKAT*
Ga0070688_1011396822	3300005365	Switchgrass Rhizosphere	GALAKAGAGLPDFVPIVPEGRAASRTAAIEIEIGGAVLRADAGIDLSFLGKIVRLLKAT*
Ga0070659_1019221971	3300005366	Corn Rhizosphere	MPDFVPIVAARRSVSGAAAIALEIGGAVLRADAGVDLAFLGKIIGLLKAT*
Ga0070678_1014050251	3300005456	Miscanthus Rhizosphere	NQLYTWRRELRSAVVANAGMGLPDFVPVVAERHTASGTAAIEIEIGDAVLRAGAGVDLGFLGEIIGLLKTRA*
Ga0070684_1000950254	3300005535	Corn Rhizosphere	VPENRAASRTAAIEIEIGGAVLRADAGIDLAFLGKIVRLLKAT*
Ga0070684_1007675951	3300005535	Corn Rhizosphere	MWRRELRSGALGNTGTLGLDFVPVVAERRSASGTGAIEIEIGGAVLRAGTGVDLAFLGRIVRLLKAT*
Ga0070686_1009314631	3300005544	Switchgrass Rhizosphere	NAGMGLPDFVPVVAERHTASGTAAIEIEIGDAVLRAGAGVDLGFLGEIIGLLKTRA*
Ga0070693_1006258081	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	SGALANRGIAMPDFVPIVAARRSVSGAAAIELEIGGAVLRADAGVDLAFLGKIIGLLKAT
Ga0070665_1018132293	3300005548	Switchgrass Rhizosphere	VRSGALASPGIAMPDFVPIVAERRVASGTVAIEIEIGGAVLRADASIDLSFLGKIVRLLKAT*
Ga0070664_1024041701	3300005564	Corn Rhizosphere	ANRGIAMPDFVPIVPENRAASRAAVIEIEIGGAVLRADAGADLAFLGKIIRLLKTT*
Ga0070702_1014689451	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	ERRSASGTGAIEIEIGGAVLRAGTGVDLAFLGRIVRLLKAT*
Ga0068866_108668283	3300005718	Miscanthus Rhizosphere	AASRTAAIEIEIGGAVLRADAGIDLSFLGKIVRLLKAT*
Ga0079219_114538671	3300006954	Agricultural Soil	GIAMPDFVPIVPERRSASGAAAIEIEIGGAVLRADAGIDLAFLGKIIRLLKAT*
Ga0066709_1038068422	3300009137	Grasslands Soil	VPVVAARHPASGTGAIEIEIGGAVLHADAGVDLAFLGKIIRLLKAT*
Ga0105243_110659823	3300009148	Miscanthus Rhizosphere	VRSGALANAGAGLPDFVPIVAESRAVSRTAVIEIEIGGAVLRADAGIELTFLGRIVRLLKAT*
Ga0105248_128457541	3300009177	Switchgrass Rhizosphere	PIVAERRVASGTAAIEIEIGGAVLRADAGVDLAFLGKIVRLLKAT*
Ga0126304_112072611	3300010037	Serpentine Soil	LANAGGALPDFVPIVPESRAASRTTAIEIEIGGTVLRADAGVDLRFLGKVIRLLKAT*
Ga0126310_110364582	3300010044	Serpentine Soil	ERRPACGSGAIEIEIGGAVLRAGAGVNLAFLGKIVRLLKTT*
Ga0126310_110538452	3300010044	Serpentine Soil	VAERRPASGTGAIEIEIGGAVLRADAGADLAFLGKVVRLLKAT*
Ga0126311_100406975	3300010045	Serpentine Soil	DFVPIVPESRAASRTTAIEIEIGGTVLRADAGVDLRFLGKVIRLLKAT*
Ga0134067_103598472	3300010321	Grasslands Soil	VPERRSASGAAAIEIEIGGAVLHADAGVDLAFLGKIVRLLKAT*
Ga0134125_102315141	3300010371	Terrestrial Soil	ANAGRALPDFVPIVPESRAASRTTAIEIEIAGTVLRADAGVDLAFLGKIVRLLKAT*
Ga0134125_110302833	3300010371	Terrestrial Soil	WRRELRSGALGNAGAPGLDFVPVVAERRPTTGSGAIEIEIGGAVLRAGAGVDLAFLGRIVRLLKAT*
Ga0134126_121564561	3300010396	Terrestrial Soil	QHYMWRRELRSGALGNNGALGLDFVPVVAERRSASGTGAIEIEIGGAVLRADAGVDLAFLGRIVRLLKAT*
Ga0134126_130507182	3300010396	Terrestrial Soil	RREVRSGALANRGIAIPDFVPIVPERRAASGAAAIEFEMGGAVLRTGADVDLSFLGKIIRLLKAT*
Ga0134122_121091671	3300010400	Terrestrial Soil	TGAIEIEIGGAVLRADAGVDLAFLGRIVRLLKAT*
Ga0150985_1163714822	3300012212	Avena Fatua Rhizosphere	RREVRSGALANAGALPDFVPIVAESRAVSGTAAIEIEIGGAVLRADAGVDLAFLGLARTVQSIL*
Ga0150984_1230383713	3300012469	Avena Fatua Rhizosphere	VPIVPESRAGSRTAAIEIEIGGAVLRADAGVDLAFLGKIVRLLKTT*
Ga0157299_101233291	3300012899	Soil	SRAVSRSAAIEIEIGGAVLRADAGIDLAFLGKIVRLLKAT*
Ga0157288_103290921	3300012901	Soil	MWRREVRSGALGNADAPGLDFVPVVAARHPAFGTGAIEIEIGGAVLHADAGVDLAFLGKIIRLLKAT*
Ga0157286_102393522	3300012908	Soil	VPENRSASRTAAIEIEIGGAVLRADAGIDLAFLGKIVRLLKAT*
Ga0157290_102058331	3300012909	Soil	ALAKAGAPGLDFVPVVAENRSASRTAAIEIEIGGAVLRADAGIELAFLGKIVRLLKAT*
Ga0157308_103084342	3300012910	Soil	RNQLYMWRRELRSGALATRGIAMPDFVPIVPENRAASRAAVIEIEIGGAVLRADAGADLAFLGKIIRLLKTT*
Ga0157302_101780101	3300012915	Soil	GLDFVPVVAARQPAFGTGAIEIEIGGAVLHADAGVDLAFLGKIIRLLKAT*
Ga0164300_104145863	3300012951	Soil	IAMPDFVPIVAERRVASGTVAIEIEIGGAVLRADASIDLSFLGKIVRLLKAT*
Ga0164298_111574431	3300012955	Soil	MGLDFVPVVAERRSASGTGASESELGGAVLRADAGVDLAFLGRIVRLLKAT*
Ga0164303_100714431	3300012957	Soil	ADAPGLDFVPVVAARHPAFGTGAIEIEIGGAVLHADAGVDLAFLGKIIRLLKAT*
Ga0164301_106483423	3300012960	Soil	RSGALGNTGALGLDFIPVVAERRSASSTAAIEIEIGGAVLRAGTGVDLAFLGRIVRLLKAT*
Ga0134087_101923901	3300012977	Grasslands Soil	RRSASGTGAIEIEIGGAVLRAGTGVDLAFLGRIVRLLKAT*
Ga0164306_105163473	3300012988	Soil	GNTGTLGLDFVPVVAERRSASGTGAIEIEIGGAVLRAGTGVDLAFLGRIVRLLKAT*
Ga0157374_105787451	3300013296	Miscanthus Rhizosphere	ALANRSIAMPDFVPIMPENRAASRTAAIEIEIGGAVLRADAGIDLSFLGKIVRLLKAT*
Ga0157374_123854301	3300013296	Miscanthus Rhizosphere	GVALPDFVPIVAESRAVPRTAAIEIEIGGAVLRAHAGIDMAFLGKIIRLLKAT*
Ga0157378_109983891	3300013297	Miscanthus Rhizosphere	LRSGALGHSGALGLDFVPVVAERRSASGTGAIEIEIGGAVLRADAGVDLAFLGRIVRLLKAT*
Ga0157375_102652543	3300013308	Miscanthus Rhizosphere	VAERRSASGTGAIEIEIGGAVLRADAGVDLAFLGRIVRLLKAT*
Ga0157375_118011211	3300013308	Miscanthus Rhizosphere	REVRSGALGNAGALGLDFVPVMAESRAAPRTAAIEIEIGGAVLHADAGVDLAFLGKIIRLLKAT*
Ga0163163_130302202	3300014325	Switchgrass Rhizosphere	ESRAVPRTTAIEIEIGGAVLRAGTGVDLAFLGKIIRLLKAI*
Ga0182000_101320641	3300014487	Soil	VASGAAIRRVCKAGAALPDFVPIVPESRAVSRTAAIEIEIGGAVLRADAGVELAFLGKIVRLLKTT*
Ga0182000_104175172	3300014487	Soil	LPDFVPIVSDSRAAICTAAIEIEIGGAVLRAGASVDLSFLGKIVRLLKAT*
Ga0182001_107134131	3300014488	Soil	AAVIEIEIGGAVLRADAGVDLAFLGKIIRLLKAI*
Ga0182008_103211961	3300014497	Rhizosphere	RRSASGAAAIELEIGGAVLRTDAGVDLAFLGKIIRLLKAT*
Ga0157379_121202792	3300014968	Switchgrass Rhizosphere	ELRSGALGNAGAPGLDFVPVVAERRPTTGSGAIEIEISGAVLRVDAGVELAFLGKVIRLLKAT*
Ga0173483_107528241	3300015077	Soil	AFGTGAIEIEIGGAVLHADAGVDLAFLGKIIRLLKAT*
Ga0182006_11198521	3300015261	Rhizosphere	VRSGALANPGVALPDFVPIMAESRAVSSAAVIEIEIGGAVLRTGTGVDLAFLGKIVRLLKAT*
Ga0182007_100211583	3300015262	Rhizosphere	PDFVPLVPENRAASRTAAIEIEIGGAVLRADAGIDLAFLGKIVRLLKAT*
Ga0132258_107561021	3300015371	Arabidopsis Rhizosphere	RNQLYMWRRELRSGALANSGAPVPDFVPIVPESRAALCTAAIEIEIGGAVLRAGMGVGLAFLGKIVRLLKAI*
Ga0132256_1009412503	3300015372	Arabidopsis Rhizosphere	ESRAVSRTAVIEIEIGGAVLRADAGIELTFLGRIVRLLKAT*
Ga0132255_1003325763	3300015374	Arabidopsis Rhizosphere	APRAAVIEIEIGGAVLRADAGVDLAFLGKIVRLLKAT*
Ga0066667_105039782	3300018433	Grasslands Soil	VAERRVASGTAAIEIEIGGAVLRVGTGADLAFLGRIVRLLKAT
Ga0190274_104551503	3300018476	Soil	VASAAIHLPDFVPVIAETRLAFSPAAIEIEIGSAVLRAGTGVDLAFLGEIVRLLKATA
Ga0190271_112305443	3300018481	Soil	VPIVAESRAASRTAAIEIEIGGAILRADAGVDLAFLGKIVRLLKAT
Ga0173481_101228483	3300019356	Soil	GLPDFVPIVAESRAVSRTAVIEIEIGGAVLRADAGIELTFLGRIVRLLKAT
Ga0173481_107273802	3300019356	Soil	ESRAVSRSAAIEIEIGGAVLRADAGIDLAFLGKIVRLLKAT
Ga0173479_100602713	3300019362	Soil	SGALGKAGAPGLDFVPIVAESRAVSRTATIAIEIGGAVLRADAGVDLAFLGRIVRLLKAT
Ga0190264_116982913	3300019377	Soil	VAARHPASGTGAIEIEIGGAVLHADAGVDLAFLGKIIRLLKAT
Ga0196978_10278773	3300021067	Soil	RRELRSGALAKAGAVLPDFVPIVAESRAVSRTAAIEIEIGGVVLRAGTGVDLAFLGKIVRLLKAT
Ga0196959_100115431	3300021184	Soil	RAASRTAMIEIEIDGAVLRADVGVDLAFLGRIVRLLKAT
Ga0182009_103363821	3300021445	Soil	SRRGGIEIEIGGAVLRADAGVELAFLGKIVRLLKTT
Ga0247754_10252223	3300023102	Soil	DFVPIVAESRAVSRSAAIEIEIGGAVLRADAGIDLAFLGKIVRLLKAT
Ga0210114_10212823	3300025795	Natural And Restored Wetlands	VAIPLPDFVPVVAESRVACGTAAIEIEIGGAVLRAGAGVDLAFLGEIVRLLKSTA
Ga0207688_103789131	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	DFVPVVAERRSASGTGAIEIEIGGAVLRAGTGVDLAFLGRIVRLLKAT
Ga0207680_112933532	3300025903	Switchgrass Rhizosphere	DFVPLVPENRAASRTAAIEIEIGGAVLRADAGIDLSFLGKIVRLLKAT
Ga0207645_102109571	3300025907	Miscanthus Rhizosphere	RNQLYMWRRQVRSGALANAGAGLPDFVPIVAESRAVSRTAAIEIEIGGAVLRADAGIELTFLGRIVRLLKAT
Ga0207652_101256303	3300025921	Corn Rhizosphere	SGALATRGIAMPDFVPIVPENRAASRAAVIEIEIGGAVLRADAGADLAFLGKIIRLLKTT
Ga0207659_104089041	3300025926	Miscanthus Rhizosphere	SGALANRGIAMPDFVPLVPENRAASRTAAIEIEIGGAVLRADAGIDLAFLGKIVRLLKAT
Ga0207687_108067861	3300025927	Miscanthus Rhizosphere	ALANRGIAMPDFVPLVPENRAASRTAAIEIEIGGAVLRADAGIDLSFLGKIVRLLKAT
Ga0207644_110646192	3300025931	Switchgrass Rhizosphere	SGALGNTGTLGLDFVPVVAERRSASGTGAIEIEIGGAVLRAGTGVDLAFLGRIVRLLKAT
Ga0207690_105174982	3300025932	Corn Rhizosphere	MPDFVPIVAARRSVSGAAAIELEIGGAVLRADAGVDLAFLGKIIGLLKAT
Ga0207679_121465102	3300025945	Corn Rhizosphere	TTGSGAIEIEISGAVLRVDAGVELAFLGKVIRLLKAT
Ga0207667_122337412	3300025949	Corn Rhizosphere	RRSASGTGAIEIEIGGAVLRADAGVDLAFLGRIVRLLKAT
Ga0207668_105434023	3300025972	Switchgrass Rhizosphere	ASGTGAIEIEIGGAVLRAGTGVDLAFLGRIVRLLKAT
Ga0207668_117893251	3300025972	Switchgrass Rhizosphere	RTTAIEIEIGGAVLRAGTGVDLAFLGKIIRLLKAI
Ga0207677_106734661	3300026023	Miscanthus Rhizosphere	ELRSGALGNTGTLGLDFVPVVAERRSASGTGAIEIEIGGAVLRAGTGVDLAFLGRIVRLLKAT
Ga0207703_108996961	3300026035	Switchgrass Rhizosphere	VSRTATIAIEIGGAVLRADAGVDLAFLGKVIRVLQTI
Ga0207703_117142273	3300026035	Switchgrass Rhizosphere	RGIAMPDFVPLVPENRAASRTAAIEIEIGGAVLRADAGIDLAFLGKIVRLLKAT
Ga0207674_108524861	3300026116	Corn Rhizosphere	LGLDFVPVVAERRSASGTGAIEIEIGGAVLRAGTGVDLAFLGRIVRLLKAT
Ga0207683_111335263	3300026121	Miscanthus Rhizosphere	GALPDFVPIVAESRAVSRSAAIEIEIGGAVLRADAGIDLAFLGKIVRLLKAT
Ga0208338_10135581	3300027514	Soil	LGNTGTLGLDFVPVVAERRSASGTGAIEIEIGGAVLRAGTGVDLAFLGRIVRLLKAT
Ga0209461_100869251	3300027750	Agave	YMWRREGRSGALAKAGGALPDFVPIVPENRAASRSGVIEIEIGGAVLRADAGVELAFLGKIVRLLKTT
Ga0268266_119139951	3300028379	Switchgrass Rhizosphere	LPDFVPVVAERHTASGTAAIEIEIGDAVLRAGAGVDLAFLGEIIGLLKTRA
Ga0268264_116118621	3300028381	Switchgrass Rhizosphere	RRPTTGSGAIEIEIGGAVLRADAGVDLAFLGKLIRLLQAI
Ga0308176_115090371	3300031996	Soil	MWRRELRSGALGNADAPGLDFVPVVAARHPASGTGAIEIEIGSAVLRAGTSVDLAFLGKIVRLLKAT
Ga0310899_101585733	3300032017	Soil	PVVAERRPTTGSGAIEIEIGGAVLRAGAGVDLAFLGRIVRLLKAT
Ga0334961_097285_97_237	3300034143	Sub-Biocrust Soil	VPIVPENRAASRSGVIEIEIGGAVLRADAGVELAFLGKIVRLLKTT
Ga0372943_0272395_10_198	3300034268	Soil	VRSGALANRGIAMPDFVPLVPESRAASRTAAIEIEIGGAVLRADAGIDLAFLGKIVRLLKAT
Ga0373948_0019339_20_223	3300034817	Rhizosphere Soil	MWRRELRSGALANRGIAMPDFVPLVPENRAASRTAAIEIEIGGAVLRADAGIDLAFLGKIVRLLKAT
Ga0373948_0093162_570_701	3300034817	Rhizosphere Soil	VAESRAVSRSAAIEIEIGGAVLCADAGIDLAFLGKIVRLLKAT