Metagenome / Metatranscriptome Family F093333

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093333
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	50 residues
Representative Sequence	MASAPQEVFGAATLGHQHGKSSQNTLPMANDAGIHQAEKMQKNRSEDIFVP
Number of Associated Samples	77
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	20.75 %
% of genes near scaffold ends (potentially truncated)	30.19 %
% of genes from short scaffolds (< 2000 bps)	86.79 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (53.774 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (56.604 % of family members)
Environment Ontology (ENVO)	Unclassified (54.717 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (58.491 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.77% β-sheet: 0.00% Coil/Unstructured: 58.23%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.23
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.23
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF13384	HTH_23	12.26
PF02371	Transposase_20	7.55
PF01850	PIN	2.83
PF04392	ABC_sub_bind	1.89
PF01609	DDE_Tnp_1	1.89
PF03358	FMN_red	0.94
PF07366	SnoaL	0.94
PF09339	HTH_IclR	0.94
PF01625	PMSR	0.94
PF13358	DDE_3	0.94
PF02452	PemK_toxin	0.94
PF13673	Acetyltransf_10	0.94
PF13551	HTH_29	0.94
PF09571	RE_XcyI	0.94
PF09907	HigB_toxin	0.94
PF05015	HigB-like_toxin	0.94
PF13602	ADH_zinc_N_2	0.94
PF12441	CopG_antitoxin	0.94
PF00583	Acetyltransf_1	0.94
PF00496	SBP_bac_5	0.94
PF00891	Methyltransf_2	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	7.55
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.89
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	1.89
COG3293	Transposase	Mobilome: prophages, transposons [X]	1.89
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	1.89
COG5421	Transposase	Mobilome: prophages, transposons [X]	1.89
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	1.89
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	1.89
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.94
COG3549	Plasmid maintenance system killer protein	Defense mechanisms [V]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.77 %
Unclassified	root	N/A	46.23 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.77 %
Unclassified	root	N/A	46.23 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.77 %
Unclassified	root	N/A	46.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.23 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	14.15 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.77 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.89 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.23 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	14.15 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.89 %
candidate division Zixibacteria	phylum	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria	0.94 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.94 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.94 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.94 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.23 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	14.15 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.89 %
unclassified candidate division Zixibacteria	no rank	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria	0.94 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.94 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.94 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.23 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	14.15 %
candidate division Zixibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria → candidate division Zixibacteria bacterium	0.94 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.94 %
unclassified Cyanobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria	0.94 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	0.94 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.94 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.94 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.94 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.23 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	13.21 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.94 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.94 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	0.94 %
Candidatus Rokubacteria bacterium GWA2_70_23	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium GWA2_70_23	0.94 %
Prochloraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochloraceae	0.94 %
candidate division Zixibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria → candidate division Zixibacteria bacterium	0.94 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.94 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.23 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	13.21 %
Prochloron	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochloraceae → Prochloron	0.94 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.94 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.94 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	0.94 %
Candidatus Rokubacteria bacterium GWA2_70_23	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium GWA2_70_23	0.94 %
candidate division Zixibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria → candidate division Zixibacteria bacterium	0.94 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.94 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.23 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	13.21 %
Prochloron didemni	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochloraceae → Prochloron → Prochloron didemni	0.94 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.94 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.94 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	0.94 %
Candidatus Rokubacteria bacterium GWA2_70_23	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium GWA2_70_23	0.94 %
candidate division Zixibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria → candidate division Zixibacteria bacterium	0.94 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.94 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_100853989	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	831	Open in IMG/M
3300005179\|Ga0066684_10589331	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300005180\|Ga0066685_10512155	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300005450\|Ga0066682_10347246	Not Available	956	Open in IMG/M
3300005586\|Ga0066691_10057646	All Organisms → cellular organisms → Bacteria → Proteobacteria	2098	Open in IMG/M
3300005598\|Ga0066706_10623127	Not Available	856	Open in IMG/M
3300007255\|Ga0099791_10067026	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1623	Open in IMG/M
3300007255\|Ga0099791_10133138	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1156	Open in IMG/M
3300007255\|Ga0099791_10350257	Not Available	707	Open in IMG/M
3300007258\|Ga0099793_10165810	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1051	Open in IMG/M
3300007258\|Ga0099793_10343350	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300007265\|Ga0099794_10278238	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300007265\|Ga0099794_10377774	Not Available	739	Open in IMG/M
3300007265\|Ga0099794_10394119	Not Available	723	Open in IMG/M
3300009038\|Ga0099829_10253925	Not Available	1434	Open in IMG/M
3300009038\|Ga0099829_10572893	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	938	Open in IMG/M
3300009038\|Ga0099829_10689864	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	848	Open in IMG/M
3300009038\|Ga0099829_11256267	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300009038\|Ga0099829_11345516	Not Available	590	Open in IMG/M
3300009038\|Ga0099829_11476826	Not Available	561	Open in IMG/M
3300009090\|Ga0099827_10222207	All Organisms → cellular organisms → Bacteria	1578	Open in IMG/M
3300009090\|Ga0099827_10527525	Not Available	1015	Open in IMG/M
3300009137\|Ga0066709_101736716	Not Available	882	Open in IMG/M
3300009137\|Ga0066709_102694798	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	663	Open in IMG/M
3300009805\|Ga0105079_1021308	Not Available	621	Open in IMG/M
3300009818\|Ga0105072_1004338	Not Available	2350	Open in IMG/M
3300009821\|Ga0105064_1139621	Not Available	517	Open in IMG/M
3300010322\|Ga0134084_10431983	Not Available	520	Open in IMG/M
3300011270\|Ga0137391_10608240	Not Available	915	Open in IMG/M
3300011271\|Ga0137393_10253279	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium GWA2_70_23	1495	Open in IMG/M
3300011271\|Ga0137393_11211269	Not Available	641	Open in IMG/M
3300011432\|Ga0137428_1052344	Not Available	1083	Open in IMG/M
3300011432\|Ga0137428_1227113	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria → candidate division Zixibacteria bacterium	552	Open in IMG/M
3300011443\|Ga0137457_1228111	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300012038\|Ga0137431_1238268	Not Available	510	Open in IMG/M
3300012199\|Ga0137383_10052894	All Organisms → cellular organisms → Bacteria	2906	Open in IMG/M
3300012201\|Ga0137365_10295866	All Organisms → cellular organisms → Bacteria	1200	Open in IMG/M
3300012201\|Ga0137365_10870315	Not Available	658	Open in IMG/M
3300012202\|Ga0137363_10081842	All Organisms → cellular organisms → Bacteria	2407	Open in IMG/M
3300012202\|Ga0137363_10253981	All Organisms → cellular organisms → Bacteria	1429	Open in IMG/M
3300012203\|Ga0137399_10130422	All Organisms → cellular organisms → Bacteria	1986	Open in IMG/M
3300012203\|Ga0137399_10312719	All Organisms → cellular organisms → Bacteria	1299	Open in IMG/M
3300012207\|Ga0137381_10109227	All Organisms → cellular organisms → Bacteria	2353	Open in IMG/M
3300012209\|Ga0137379_10251947	All Organisms → cellular organisms → Bacteria	1678	Open in IMG/M
3300012209\|Ga0137379_10437302	All Organisms → cellular organisms → Bacteria	1217	Open in IMG/M
3300012209\|Ga0137379_10586074	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1022	Open in IMG/M
3300012209\|Ga0137379_11511268	Not Available	572	Open in IMG/M
3300012349\|Ga0137387_10065533	All Organisms → cellular organisms → Bacteria	2462	Open in IMG/M
3300012351\|Ga0137386_10064320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	2552	Open in IMG/M
3300012351\|Ga0137386_10204980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1417	Open in IMG/M
3300012357\|Ga0137384_11151906	Not Available	619	Open in IMG/M
3300012361\|Ga0137360_10170385	All Organisms → cellular organisms → Bacteria	1742	Open in IMG/M
3300012361\|Ga0137360_10573076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochloraceae → Prochloron → Prochloron didemni	965	Open in IMG/M
3300012362\|Ga0137361_11630570	Not Available	566	Open in IMG/M
3300012363\|Ga0137390_10909842	Not Available	834	Open in IMG/M
3300012685\|Ga0137397_10324980	All Organisms → cellular organisms → Bacteria	1147	Open in IMG/M
3300012917\|Ga0137395_10352661	Not Available	1048	Open in IMG/M
3300012917\|Ga0137395_10492359	Not Available	883	Open in IMG/M
3300012918\|Ga0137396_10308349	Not Available	1171	Open in IMG/M
3300012923\|Ga0137359_10233006	All Organisms → cellular organisms → Bacteria → Proteobacteria	1644	Open in IMG/M
3300012925\|Ga0137419_10227826	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1394	Open in IMG/M
3300012927\|Ga0137416_11888655	Not Available	546	Open in IMG/M
3300012929\|Ga0137404_10065653	All Organisms → cellular organisms → Bacteria	2830	Open in IMG/M
3300012929\|Ga0137404_10855389	Not Available	828	Open in IMG/M
3300012929\|Ga0137404_10975190	Not Available	775	Open in IMG/M
3300012930\|Ga0137407_11590894	Not Available	622	Open in IMG/M
3300012930\|Ga0137407_12022152	Not Available	550	Open in IMG/M
3300012944\|Ga0137410_10258544	Not Available	1367	Open in IMG/M
3300014884\|Ga0180104_1037337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1269	Open in IMG/M
3300015241\|Ga0137418_10048959	All Organisms → cellular organisms → Bacteria	3884	Open in IMG/M
3300018028\|Ga0184608_10459065	Not Available	548	Open in IMG/M
3300018052\|Ga0184638_1128786	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300018056\|Ga0184623_10102509	Not Available	1323	Open in IMG/M
3300018061\|Ga0184619_10142463	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1092	Open in IMG/M
3300018075\|Ga0184632_10108433	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1219	Open in IMG/M
3300018076\|Ga0184609_10426441	Not Available	613	Open in IMG/M
3300018076\|Ga0184609_10575852	Not Available	507	Open in IMG/M
3300018078\|Ga0184612_10538937	Not Available	563	Open in IMG/M
3300018422\|Ga0190265_11131769	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	902	Open in IMG/M
3300018433\|Ga0066667_10520263	Not Available	983	Open in IMG/M
3300018469\|Ga0190270_13204188	Not Available	518	Open in IMG/M
3300019233\|Ga0184645_1192416	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300019248\|Ga0180117_1278389	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	641	Open in IMG/M
3300019259\|Ga0184646_1009699	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1001	Open in IMG/M
3300020003\|Ga0193739_1134285	Not Available	605	Open in IMG/M
3300020065\|Ga0180113_1261541	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300020084\|Ga0194110_10855959	Not Available	545	Open in IMG/M
3300020170\|Ga0179594_10426504	Not Available	504	Open in IMG/M
3300020193\|Ga0194131_10069041	All Organisms → cellular organisms → Bacteria	2147	Open in IMG/M
3300021051\|Ga0206224_1011708	Not Available	977	Open in IMG/M
3300021051\|Ga0206224_1036977	Not Available	627	Open in IMG/M
3300021081\|Ga0210379_10550256	Not Available	514	Open in IMG/M
3300022195\|Ga0222625_1288253	Not Available	522	Open in IMG/M
3300026358\|Ga0257166_1014488	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
3300027655\|Ga0209388_1010567	All Organisms → cellular organisms → Bacteria	2477	Open in IMG/M
3300027655\|Ga0209388_1015413	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2101	Open in IMG/M
3300027671\|Ga0209588_1018549	All Organisms → cellular organisms → Bacteria	2166	Open in IMG/M
3300027846\|Ga0209180_10047127	All Organisms → cellular organisms → Bacteria	2370	Open in IMG/M
3300027882\|Ga0209590_10577642	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	724	Open in IMG/M
3300027903\|Ga0209488_10273398	Not Available	1264	Open in IMG/M
3300028878\|Ga0307278_10477197	Not Available	545	Open in IMG/M
3300031114\|Ga0308187_10015797	All Organisms → cellular organisms → Bacteria	1670	Open in IMG/M
3300031421\|Ga0308194_10039096	All Organisms → cellular organisms → Bacteria	1161	Open in IMG/M
3300031947\|Ga0310909_10787899	All Organisms → cellular organisms → Bacteria → Proteobacteria	786	Open in IMG/M
3300034147\|Ga0364925_0067657	Not Available	1234	Open in IMG/M
3300034643\|Ga0370545_041303	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	867	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.19%
Aquatic	Environmental → Aquatic	19.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.36%
Sediment	Environmental → Aquatic → Sediment	12.26%
Freshwater	Environmental → Aquatic → Freshwater	7.55%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.89%
Floodplain	Environmental → Terrestrial → Floodplain	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.53%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	12.26%
Sediment	Environmental → Aquatic → Freshwater → Sediment	5.66%
Sand	Environmental → Terrestrial → Soil → Sand	2.83%
Lake	Environmental → Aquatic → Freshwater → Lake	1.89%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	64.15%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	12.26%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.49%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	5.66%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.83%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.89%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.89%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	56.60%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	7.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.60%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	5.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.66%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	4.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.83%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.83%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.89%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	1.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.94%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009805	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_0_10	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300009821	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011432	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT718_2	Environmental	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300012038	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT800_2	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019233	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019248	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_2_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300020065	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT499_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020084	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200m	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020193	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120m	Environmental	Open in IMG/M
3300021051	Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos A1	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M
3300034643	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1008539892	3300000955	Soil	MKMASEPQEVFGAATRGHQHVKSSQNTLPMANNAGIHQAEKKQKTAHED
Ga0066684_105893311	3300005179	Soil	MKMASEPQEVFGAATRRHQPVKSSQNTLPMANNAGIHQAEKKQTTTHEDIFVP*
Ga0066685_105121552	3300005180	Soil	QEVFGAATLGHLHVQSRQNTLPMAHDAGIHQAEKKAKNRSQDIFVP*
Ga0066682_103472461	3300005450	Soil	MDMAIAPQEVFGAATLGHLHVQSRQNTLPMAHDAGIHQAEKKAKNRSQDI
Ga0066691_100576463	3300005586	Soil	MPMASAPQEVFGAATLGHQHVKPRQNTLPMATDAGIHQAEKKQKTRSEDIFVP*
Ga0066706_106231271	3300005598	Soil	TAFVVSARVMKMVRAPQEGFGTATLGHRHVQSSPNTLPLANDAGIHQAEKKHKTAHEDIFVS*
Ga0099791_100670262	3300007255	Vadose Zone Soil	VFGAAKLEHQHGKSRQNTLPMANDAGINQAEKNAKNRLEDIFVP*
Ga0099791_101331382	3300007255	Vadose Zone Soil	MDMASEPQEVFGAAPLGHLHVQSSQHTLPMANDAGIHQAEKKAKNRSQDIFVP*
Ga0099791_103502572	3300007255	Vadose Zone Soil	MHVASAPQEVFVAATLGHLHMKPRQHTLPLANHAGIHEAEK
Ga0099793_101658102	3300007258	Vadose Zone Soil	MPMASAPQEVFGAATLGHQQVTPRQNTLPMANDAGIHQAEKKQKNRSEDIFVP*
Ga0099793_103433502	3300007258	Vadose Zone Soil	MASAPQEVFGAAKLEHQHGKSRQNTLPMANDAGIHQAEKKQKNRSEDIFVP*
Ga0099794_102782382	3300007265	Vadose Zone Soil	MASAPQEVFGAAKLEHQHGKSRQNTLPMANDAGINQAEKNAKNRLEDIFVP*
Ga0099794_103777742	3300007265	Vadose Zone Soil	MASEPQEVFGAATLGHLHVTSSQDTLSIANNAGIHQAEKIAKNRSEDIFVS*
Ga0099794_103941192	3300007265	Vadose Zone Soil	MASAPQEVFGAATLGHQQVTPRQNTLPMANDAGIHQAEKKQKNRSEDIFVP*
Ga0099829_102539252	3300009038	Vadose Zone Soil	MASEPQEVFGAATLGHLHVTSSQDTLSMANNAGIHQAEKIAKNRSEDIFVS*
Ga0099829_105728932	3300009038	Vadose Zone Soil	VFGAATLGHLHVKSSQNTLPMANDAGIHQAEKKAKNRSQDIFVP*
Ga0099829_106898641	3300009038	Vadose Zone Soil	MDMASEPQEVFGAATLGHQHVKASQNTLPLANDAGIHQAEKKQKAAQRIL
Ga0099829_112562672	3300009038	Vadose Zone Soil	PQDVFGAATLGHLPVKSRQNTLPMANDAGIHQAEKKAKNRSQDIFVP*
Ga0099829_113455161	3300009038	Vadose Zone Soil	MDMAREPQEVFGAATLGHLHVQSSQDTLSIANDAGIKQAEKNTKSRS*
Ga0099829_114768261	3300009038	Vadose Zone Soil	VFGAATLGHLHVKSSQNTLPMANDAGIHQAEKKAKNRSQDVFVP*
Ga0099827_102222071	3300009090	Vadose Zone Soil	KTARLVSALVMDMTSEPQEVFGAATLGHQHVQSSQNTLPMANDAGIQQAEKKSKNRSQDIFVP*
Ga0099827_105275252	3300009090	Vadose Zone Soil	MHVASAPQEVFGAATLGHLHMKPRQHTLPLANHAGIHEAEKMQKSRSEDIFVP*
Ga0066709_1017367162	3300009137	Grasslands Soil	MSAIVMDMAMAPQEVCGAATLGHLHVQSSQHTLPLANDAGIHQAEKKAKNRSQDIFVP*
Ga0066709_1026947982	3300009137	Grasslands Soil	SQKTDGWVSALVIDMASEPQEVFGAATLGHLHVQSSQDTLSMANNAGIHQAGKIAKNRSEDIFVS*
Ga0105079_10213081	3300009805	Groundwater Sand	MSMASEPQEVFGAATLGHQAVKSSQNTLSAANDAGIHQAEKKPKNRSEDIFVP*
Ga0105072_10043381	3300009818	Groundwater Sand	VFGAATLEHQHGKSSQNTLPMANDAGINQAEKNAKNRLEDIFVP*
Ga0105064_11396211	3300009821	Groundwater Sand	VFGAATLEHQHGKSSQITLPMANDAGINQAEKNAKNRLEDIFVP*
Ga0134084_104319832	3300010322	Grasslands Soil	MKMVRAPQAGFGTATLGHRHVQSSPNTLPLANDAGIHQAEKKHKTAHEDIFVS*
Ga0137391_106082402	3300011270	Vadose Zone Soil	MHRASEPQEVFGAATLGHQHVKPRQNTLPMANDAGIHQAEKKQKNR
Ga0137393_102532791	3300011271	Vadose Zone Soil	MHMASEPQYVFGAATLGHQHVEASQNTLSMANDAGIHQAEKKQKNRSEDIFVP*
Ga0137393_112112692	3300011271	Vadose Zone Soil	MKMASAPQEVFGAATRRHQHGTSRQHTLPMANNAGIHQAEKKQK
Ga0137428_10523442	3300011432	Soil	LISAIVMDMASAPQEVFGAATLGHLHVKSSQHTLPMANDAGIHQAEKKAKNRSQDFFVP*
Ga0137428_12271132	3300011432	Soil	MHVASDPQEVFGAATLGHLHVKSSQHTLPTANDAGIHQAEKKAKNRSQDFFVP*
Ga0137457_12281112	3300011443	Soil	VFGAATVEHQPVKSSQNTLPMANAAEISQAEKKQKNRSEDTFVP*
Ga0137431_12382681	3300012038	Soil	MKMVREPQEVFGAAMLGHLHGKPSQNTLPMATDAGIHQAEKNAQNRSEDFFVP*
Ga0137383_100528942	3300012199	Vadose Zone Soil	MVMASAPQEVFGAATLGHLPVTSRQNTLPMANDAGIHQAEKKAKNRSQDLFVP*
Ga0137365_102958661	3300012201	Vadose Zone Soil	LLAAIVMAMAMAPQDVFGAATLGHLQVQSRQHTLPMANDAGIHQAEKKAKNRSQDIFVP*
Ga0137365_108703151	3300012201	Vadose Zone Soil	MKMVREPQEVFGAATLGHLHVQSSPNTLPLANDAGIQQAEKKQKTAHEAIFVS*
Ga0137363_100818421	3300012202	Vadose Zone Soil	MASAPQEVFGAAKLEHQHGKSRQNTLPMANDAGINQAEKNAKNR
Ga0137363_102539812	3300012202	Vadose Zone Soil	MHVASEPQEVFGAATLGHQHVKPRQNTLPMATDAGIHQAEKKQKTRSEDIFVP*
Ga0137399_101304222	3300012203	Vadose Zone Soil	MASAPQEVFGAAKLEHQHGKSRQNTLPMANDAGINQAEKNAKNRFEDIFVP*
Ga0137399_103127192	3300012203	Vadose Zone Soil	MDMASEPQEVFGAAPLGHLHVQSSQNTLPMANDAGIHQAEKKAKNRSQDIFVP*
Ga0137381_101092273	3300012207	Vadose Zone Soil	MPMASAPQEVFGAATLGHQHVKPRQNTLPMATDAGIHQAEKKQKTRSED
Ga0137379_102519472	3300012209	Vadose Zone Soil	VFGAATLGHQHVKPRQNTLPMATDAGIHQAEKKQKTRSEDIFVP*
Ga0137379_104373021	3300012209	Vadose Zone Soil	MASAPQEVFGAATLGHQHVKPRQNTLPMATDAGIHQAEKKQKTRSED
Ga0137379_105860743	3300012209	Vadose Zone Soil	VFGAATLGHLHVKSSQNTLPLANDAGIQQAEKKQKTAHEDIFVS*
Ga0137379_115112681	3300012209	Vadose Zone Soil	VFGAATLGHLHVKSSQNTLPMANDAGIHQAGKKAKNRSQDIFVP*
Ga0137387_100655334	3300012349	Vadose Zone Soil	MASAPQEVFGAATLGHQHVKPRQNTLPMATDAGIHQAEKKQKTRSEDIFVP*
Ga0137386_100643203	3300012351	Vadose Zone Soil	MHMASAPQEVFGAATLGHQHVKPRQNTLPMATDAGIHQAEKKQKTRSEDIFVP*
Ga0137386_102049801	3300012351	Vadose Zone Soil	MASAPQEVFGAATLGHQHGKSSQNTLPMANDAGIHQAEKMQKNRSEDIFVP*
Ga0137384_111519061	3300012357	Vadose Zone Soil	MVSALVMKMVREPQEVFGAATLGHLHVKSSQSTLPIANHAGIQPAEKTQKTAQR
Ga0137360_101703854	3300012361	Vadose Zone Soil	HQHVKPRQNTLPMATDAGIHQAEKKQKARSEDIFVP*
Ga0137360_105730763	3300012361	Vadose Zone Soil	CGAATLGHLHVPSSQDTRSMANHAGIHQAETIAKNRSEDIFVS*
Ga0137361_116305702	3300012362	Vadose Zone Soil	MERASEPQEVFGAATRGHQQVKSRQNTLPMANKAGIHQAEKNAKNRSQDIFVP*
Ga0137390_109098421	3300012363	Vadose Zone Soil	MASAPQEVFGAATLGHLHVTSSQDTLSMANNAGIHQAEKIAKNRSEDIF
Ga0137397_103249802	3300012685	Vadose Zone Soil	MEMASEPQEVFGAATRGHQHGKSSQNTLPMANNAGIHQAEKNAKNRSQDIFVP*
Ga0137395_103526611	3300012917	Vadose Zone Soil	MASAPQEVFGAATLGHLHVTSSQDTLSMANNAGIHQAEKIAKNRSEDIFVS*
Ga0137395_104923591	3300012917	Vadose Zone Soil	MHVASAPQEVFGAATLGHLHMKPRQHTLPLANHAGIHEAEKMQKSR
Ga0137396_103083491	3300012918	Vadose Zone Soil	MASAPQEVFGAATLGHQQVTPRQNTLTMANDAGIHQAEKKQKNRSEDIFVP*
Ga0137359_102330062	3300012923	Vadose Zone Soil	MPMASEPQEVFGAATLGHQHVKPSQNTLPMANDAGIHQAEKKQKNRSEDIFVP*
Ga0137419_102278261	3300012925	Vadose Zone Soil	MASAPQEVFGAATLGHQQVTPRQNTLPMANDAGIPQAEKKQKNRS*
Ga0137416_118886552	3300012927	Vadose Zone Soil	MASAPQEVFGAATLGHQQVKPRQNTLPMANDAGIHQAEKKQKNRSEDIFVP*
Ga0137404_100656532	3300012929	Vadose Zone Soil	VFGAATLGHLHVKSSQDTLSIANDAGIKQAEKNTKSRSEDIFVP*
Ga0137404_108553892	3300012929	Vadose Zone Soil	MAREPQEVCGAATLGHLHVQSRQNTLPIANDAGIQPAEKKQKTAHEDIFVS*
Ga0137404_109751901	3300012929	Vadose Zone Soil	MASAPQEVFGAATLEHPHGKSRQHTLPMANDAGINQAEKNAKNRLEDIFVP*
Ga0137407_115908942	3300012930	Vadose Zone Soil	MAREPQEVCGAATLGHLHVPSRQNTLPLANDAGIQPAEKKQKTAHEDIFVS*
Ga0137407_120221521	3300012930	Vadose Zone Soil	MKMVREPQYVFGAATLGHLHVQSRQSTLPMANHAGIQPAEKTQKTAQRISL
Ga0137410_102585441	3300012944	Vadose Zone Soil	MASEPQEVFGAATLGHQQVKPSQNTLPMANDAGIHQAEKKQKNRSEDIFVP*
Ga0180104_10373372	3300014884	Soil	MASEPPEVFGAATLGHLHGKASQDTLSMANNAGIHQAEKIAKNRSEDLFVS*
Ga0137418_100489594	3300015241	Vadose Zone Soil	MPMASAPQEVFGAATLGHQQVTPRQNTLPMANDAGIPQAEKKQKNRS*
Ga0184608_104590651	3300018028	Groundwater Sediment	VFGAATLGHLHVKSSQNTLPMANDAGIHQAEKKAKNRSQDIFVP
Ga0184638_11287862	3300018052	Groundwater Sediment	MASEPQYVFGAATLEHQHGKSSQNTLPMANDAGINQAEKNAKNRFEDIFVP
Ga0184623_101025093	3300018056	Groundwater Sediment	MASEPQYVFGAATLEHQHGKSSQNTLPMANDAGINQAENNAKNRLEDIFVP
Ga0184619_101424631	3300018061	Groundwater Sediment	VFGAATLGHLHVKSSQNTLPMANDAGIQQAEKKSKNRSQDIFVP
Ga0184632_101084334	3300018075	Groundwater Sediment	VFGAATLEHQHGKSSQNTLPMANDAGINQAEKNAKNRFEDIFVP
Ga0184609_104264411	3300018076	Groundwater Sediment	VFGAATLGHLHVKSRQNTLPMANDAGIHQAEKKAKNRSQDIFVP
Ga0184609_105758521	3300018076	Groundwater Sediment	VAALVIDMASAPQDVFGAATLEHQHGQSRPNTVPMANDAGINPAEKNATNRFEDIFVP
Ga0184612_105389371	3300018078	Groundwater Sediment	MASEPQYVFGAATLEHQHGKSSQNTLPMTNDAGIHQAEKKAKSRSQDIF
Ga0190265_111317692	3300018422	Soil	MVAALVMKMVRESQEVFGAATVVHLHVQSRQATLPMAHQAGIQPAEK
Ga0066667_105202631	3300018433	Grasslands Soil	DSARVMKMLREPQYVFGAATLWHLHVKSSQNTLPLANDAGIQQAEKKQKTAHEDIFVS
Ga0190270_132041881	3300018469	Soil	MKLASEPQDVCGAATLGHLHGKSRQHMLPMANDAGMHQAEKMQKNRSQDTFVP
Ga0184645_11924162	3300019233	Groundwater Sediment	VAALVIDMASAPQDVFGAATLEHQHGQSRPNTVPMANDAGINPAEKNAKNRFEDIFVP
Ga0180117_12783891	3300019248	Groundwater Sediment	MDRASAPQEVFGAATLGHQHVQSSQNTVSMANDAGITQAEKTQKTA
Ga0184646_10096992	3300019259	Groundwater Sediment	MASAPQYVCGAATLRQLHGQSRQDALSMANHAGIHQAEKKQKNRSED
Ga0193739_11342851	3300020003	Soil	MASEPQEVFGAATLEHQHGKSRQNTLPMAHDAGINQAEKNAKNRLEDIFVP
Ga0180113_12615411	3300020065	Groundwater Sediment	SQQTARVVSALVMDMTSAPPEVFGAATLEHQHGQSRQNTLPMANHAGIHQAEKKQKTAHEDMFVP
Ga0194110_108559591	3300020084	Freshwater Lake	VFGAATLGHLHVKSSQNTLPQANNAGMHEAEKTQKMQKTRLEDIFVP
Ga0179594_104265041	3300020170	Vadose Zone Soil	MPMASEPQEVFGAATLGHQHVKPSQNTLPMANDAGIHQAEKKQKNRSEDIFVP
Ga0194131_100690413	3300020193	Freshwater Lake	MKLASEPQEVFGAATVGHPHGKSSQNTLSMANDAGIHQAEKMQKSRSEDSFVP
Ga0206224_10117082	3300021051	Deep Subsurface Sediment	MNMGREPQEVFGAATLGHLHGQSSQDTLPRANNAGMHEAEKKQKTRSEDIFVP
Ga0206224_10369772	3300021051	Deep Subsurface Sediment	MDMAREPQEVFGAATLGHLHMKSSQDTLPIANNAGITQAEKKQKNRSEDIFVP
Ga0210379_105502561	3300021081	Groundwater Sediment	MASEPQEVFGAATLGHLHVQSRQDTRSMANNAGIHQAEKKQKT
Ga0222625_12882531	3300022195	Groundwater Sediment	VFGAAKLEHQHGKSSQNTLPMANDAGINQAEKNAKNRLEDIFVP
Ga0257166_10144882	3300026358	Soil	MASAPQEVFGAAKLEHQHGKSRQNTLPMANDAGINQAEKNAKNRFEDI
Ga0209388_10105672	3300027655	Vadose Zone Soil	MASAPQEVFGAAKLEHQHGKSRQNTLPMANDAGINQAEKNAKNRLEDIFVP
Ga0209388_10154132	3300027655	Vadose Zone Soil	MDMASEPQEVFGAAPLGHLHVQSSQHTLPMANDAGIHQAEKKAKNRSQDIFVP
Ga0209588_10185493	3300027671	Vadose Zone Soil	MDMASEPQEVFGAAPLGHLHVQSSQHTLPMANDAGIHQAEKKAKNRSQDIFV
Ga0209180_100471273	3300027846	Vadose Zone Soil	VFGAATLGHLHVKSSQNTLPMANDAGIHQAEKKAKNRSQDVFVP
Ga0209590_105776421	3300027882	Vadose Zone Soil	MDMTSEPQEVFGAATLGHQHVKSSQNTLPMANDAGIQQAEKKSKNRSQDIFVP
Ga0209488_102733982	3300027903	Vadose Zone Soil	MASEPHEVFGAATLGHRHVTSSQDTLSMANNAGIHQAEKIAKNRSEDIFVS
Ga0307278_104771971	3300028878	Soil	MASAPQYVCGAATLGHLHGKSRQDTLSMANHAGIHQAEKKQKNRSEDIFVP
Ga0308187_100157975	3300031114	Soil	VFGAATLGHLHVKSGQNTLPMANDAGIHQAEKKAKNRSQDI
Ga0308194_100390961	3300031421	Soil	VFGAATLEHQHGKSSQNTLPMANDAGINQAEKNAKNRLEDIFVP
Ga0310909_107878991	3300031947	Soil	MASEPQEVFGAATLGHLHVKSSQDTLSLANNAGIHQAEKIAKNRSEDIFVS
Ga0364925_0067657_251_385	3300034147	Sediment	VFGAATSGHQYAKSSQNTLPMANNAGIHQAEKSKKTAHEDIFVP
Ga0370545_041303_634_813	3300034643	Soil	VVSALVIDLASEPQYVFGAATLGHLHVKSRQNTLPMANDAGIHQAEKKQKNRSEDTFVP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093333

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences