Metagenome / Metatranscriptome Family F093327

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093327
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	42 residues
Representative Sequence	MRKLNALLIVCFALVFASTVQGQTNAGVNNAELNGNYAFTF
Number of Associated Samples	73
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.62 %
% of genes near scaffold ends (potentially truncated)	95.28 %
% of genes from short scaffolds (< 2000 bps)	88.68 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.962 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (60.377 % of family members)
Environment Ontology (ENVO)	Unclassified (54.717 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (61.321 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 39.13% β-sheet: 0.00% Coil/Unstructured: 60.87%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF01252	Peptidase_A8	5.66
PF11008	DUF2846	4.72
PF00232	Glyco_hydro_1	4.72
PF08264	Anticodon_1	2.83
PF00534	Glycos_transf_1	2.83
PF00248	Aldo_ket_red	1.89
PF13692	Glyco_trans_1_4	1.89
PF13537	GATase_7	1.89
PF13231	PMT_2	0.94
PF00665	rve	0.94
PF15780	ASH	0.94
PF00733	Asn_synthase	0.94
PF13439	Glyco_transf_4	0.94
PF00133	tRNA-synt_1	0.94
PF06827	zf-FPG_IleRS	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0597	Lipoprotein signal peptidase	Cell wall/membrane/envelope biogenesis [M]	11.32
COG2723	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	Carbohydrate transport and metabolism [G]	4.72
COG0060	Isoleucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.94
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.94
COG0495	Leucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.94
COG0525	Valyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.94
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.94
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.94
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.94
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.96 %
Unclassified	root	N/A	16.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.96 %
Unclassified	root	N/A	16.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.96 %
Unclassified	root	N/A	16.04 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	50.00 %
Unclassified	root	N/A	16.04 %
Calditrichaeota	phylum	All Organisms → cellular organisms → Bacteria → Calditrichaeota	0.94 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	23.58 %
Unclassified	root	N/A	16.04 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.83 %
Calditrichia	class	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia	0.94 %
Candidatus Omnitrophica	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.58 %
Unclassified	root	N/A	16.04 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.83 %
Calditrichales	order	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales	0.94 %
unclassified Candidatus Omnitrophica	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.58 %
Unclassified	root	N/A	16.04 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.83 %
Candidatus Omnitrophica bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	0.94 %
Calditrichaceae	family	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.58 %
Unclassified	root	N/A	16.04 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.94 %
Caldithrix	genus	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix	0.94 %
Candidatus Omnitrophica bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.58 %
Unclassified	root	N/A	16.04 %
unclassified Caldithrix	no rank	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → unclassified Caldithrix	0.94 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	0.94 %
Candidatus Omnitrophica bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.58 %
Unclassified	root	N/A	16.04 %
Caldithrix sp.	species	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → unclassified Caldithrix → Caldithrix sp.	0.94 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	0.94 %
Candidatus Omnitrophica bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10383774	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300001593\|JGI12635J15846_10830351	All Organisms → cellular organisms → Bacteria → Acidobacteria	529	Open in IMG/M
3300001661\|JGI12053J15887_10424708	Not Available	637	Open in IMG/M
3300002909\|JGI25388J43891_1041845	All Organisms → cellular organisms → Bacteria → Acidobacteria	702	Open in IMG/M
3300002917\|JGI25616J43925_10305439	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300005175\|Ga0066673_10879232	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300005178\|Ga0066688_10756027	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300005518\|Ga0070699_101314823	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300005552\|Ga0066701_10623602	Not Available	654	Open in IMG/M
3300005566\|Ga0066693_10025951	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1817	Open in IMG/M
3300006031\|Ga0066651_10097873	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1472	Open in IMG/M
3300007258\|Ga0099793_10073875	All Organisms → cellular organisms → Bacteria	1545	Open in IMG/M
3300007265\|Ga0099794_10366887	Not Available	750	Open in IMG/M
3300007265\|Ga0099794_10600443	All Organisms → cellular organisms → Bacteria → Acidobacteria	583	Open in IMG/M
3300009012\|Ga0066710_101067449	Not Available	1248	Open in IMG/M
3300009038\|Ga0099829_10741278	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300009088\|Ga0099830_10171873	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	1680	Open in IMG/M
3300009088\|Ga0099830_10295183	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1293	Open in IMG/M
3300009088\|Ga0099830_11513635	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300009143\|Ga0099792_10079864	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1672	Open in IMG/M
3300009143\|Ga0099792_10467636	All Organisms → cellular organisms → Bacteria → Acidobacteria	784	Open in IMG/M
3300010159\|Ga0099796_10374884	Not Available	619	Open in IMG/M
3300010337\|Ga0134062_10562966	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	582	Open in IMG/M
3300011269\|Ga0137392_11029163	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	676	Open in IMG/M
3300011270\|Ga0137391_10197106	Not Available	1752	Open in IMG/M
3300011270\|Ga0137391_10197851	All Organisms → cellular organisms → Bacteria	1748	Open in IMG/M
3300011270\|Ga0137391_10223061	Not Available	1637	Open in IMG/M
3300012096\|Ga0137389_10153435	All Organisms → cellular organisms → Bacteria	1887	Open in IMG/M
3300012096\|Ga0137389_11207341	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300012096\|Ga0137389_11343177	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	609	Open in IMG/M
3300012169\|Ga0153990_1125361	Not Available	572	Open in IMG/M
3300012189\|Ga0137388_10142267	All Organisms → cellular organisms → Bacteria	2114	Open in IMG/M
3300012198\|Ga0137364_10708943	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	760	Open in IMG/M
3300012200\|Ga0137382_10604185	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	783	Open in IMG/M
3300012202\|Ga0137363_10202654	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1592	Open in IMG/M
3300012203\|Ga0137399_10094734	All Organisms → cellular organisms → Bacteria	2296	Open in IMG/M
3300012203\|Ga0137399_10581566	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300012203\|Ga0137399_10667325	All Organisms → cellular organisms → Bacteria → Acidobacteria	875	Open in IMG/M
3300012203\|Ga0137399_11092324	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	672	Open in IMG/M
3300012203\|Ga0137399_11584360	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300012205\|Ga0137362_10673983	Not Available	889	Open in IMG/M
3300012205\|Ga0137362_10892212	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300012205\|Ga0137362_11571359	All Organisms → cellular organisms → Bacteria → Acidobacteria	545	Open in IMG/M
3300012349\|Ga0137387_10466355	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300012361\|Ga0137360_10030404	All Organisms → cellular organisms → Bacteria	3727	Open in IMG/M
3300012361\|Ga0137360_11526911	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300012683\|Ga0137398_11256077	Not Available	503	Open in IMG/M
3300012685\|Ga0137397_10050789	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2975	Open in IMG/M
3300012685\|Ga0137397_10069966	All Organisms → cellular organisms → Bacteria	2538	Open in IMG/M
3300012685\|Ga0137397_10892978	Not Available	659	Open in IMG/M
3300012918\|Ga0137396_10213687	All Organisms → cellular organisms → Bacteria → Acidobacteria	1419	Open in IMG/M
3300012922\|Ga0137394_10425914	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → unclassified Caldithrix → Caldithrix sp.	1130	Open in IMG/M
3300012924\|Ga0137413_10329363	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1076	Open in IMG/M
3300012925\|Ga0137419_11170603	All Organisms → cellular organisms → Bacteria → Acidobacteria	643	Open in IMG/M
3300012927\|Ga0137416_10148603	All Organisms → cellular organisms → Bacteria	1831	Open in IMG/M
3300012927\|Ga0137416_10157358	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1785	Open in IMG/M
3300012929\|Ga0137404_10175706	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1799	Open in IMG/M
3300012929\|Ga0137404_11861830	All Organisms → cellular organisms → Bacteria → Acidobacteria	560	Open in IMG/M
3300012929\|Ga0137404_12070584	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300014154\|Ga0134075_10220089	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	818	Open in IMG/M
3300014157\|Ga0134078_10452354	All Organisms → cellular organisms → Bacteria → Acidobacteria	587	Open in IMG/M
3300015053\|Ga0137405_1052142	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300015053\|Ga0137405_1052143	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300015053\|Ga0137405_1204786	All Organisms → cellular organisms → Bacteria	1115	Open in IMG/M
3300015053\|Ga0137405_1282628	All Organisms → cellular organisms → Bacteria	1135	Open in IMG/M
3300015053\|Ga0137405_1282629	All Organisms → cellular organisms → Bacteria	1101	Open in IMG/M
3300015053\|Ga0137405_1391353	All Organisms → cellular organisms → Bacteria	6273	Open in IMG/M
3300015054\|Ga0137420_1293928	All Organisms → cellular organisms → Bacteria → Acidobacteria	1909	Open in IMG/M
3300015054\|Ga0137420_1402081	All Organisms → cellular organisms → Bacteria → Acidobacteria	7459	Open in IMG/M
3300015264\|Ga0137403_10220881	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1817	Open in IMG/M
3300017659\|Ga0134083_10031021	All Organisms → cellular organisms → Bacteria	1949	Open in IMG/M
3300018433\|Ga0066667_10019477	All Organisms → cellular organisms → Bacteria	3565	Open in IMG/M
3300018482\|Ga0066669_11148682	All Organisms → cellular organisms → Bacteria → Acidobacteria	701	Open in IMG/M
3300020199\|Ga0179592_10001705	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8949	Open in IMG/M
3300020199\|Ga0179592_10149022	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1070	Open in IMG/M
3300020579\|Ga0210407_10086367	All Organisms → cellular organisms → Bacteria	2369	Open in IMG/M
3300020580\|Ga0210403_10834548	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300020580\|Ga0210403_11203269	Not Available	583	Open in IMG/M
3300021407\|Ga0210383_10721769	Not Available	856	Open in IMG/M
3300021432\|Ga0210384_10193066	All Organisms → cellular organisms → Bacteria	1830	Open in IMG/M
3300024290\|Ga0247667_1040609	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300024330\|Ga0137417_1300023	All Organisms → cellular organisms → Bacteria → Acidobacteria	781	Open in IMG/M
3300024330\|Ga0137417_1481465	All Organisms → cellular organisms → Bacteria → Acidobacteria	1357	Open in IMG/M
3300026306\|Ga0209468_1095084	All Organisms → cellular organisms → Bacteria → Acidobacteria	970	Open in IMG/M
3300026318\|Ga0209471_1057916	All Organisms → cellular organisms → Bacteria → Proteobacteria	1771	Open in IMG/M
3300026320\|Ga0209131_1177666	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300026323\|Ga0209472_1243149	All Organisms → cellular organisms → Bacteria → Acidobacteria	577	Open in IMG/M
3300026325\|Ga0209152_10069158	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1275	Open in IMG/M
3300026498\|Ga0257156_1084834	Not Available	658	Open in IMG/M
3300026508\|Ga0257161_1095571	All Organisms → cellular organisms → Bacteria → Acidobacteria	618	Open in IMG/M
3300026540\|Ga0209376_1118271	All Organisms → cellular organisms → Bacteria → Acidobacteria	1322	Open in IMG/M
3300026551\|Ga0209648_10769770	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300027587\|Ga0209220_1057071	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300027643\|Ga0209076_1112247	All Organisms → cellular organisms → Bacteria → Acidobacteria	771	Open in IMG/M
3300027671\|Ga0209588_1249512	All Organisms → cellular organisms → Bacteria → Acidobacteria	542	Open in IMG/M
3300027846\|Ga0209180_10043977	All Organisms → cellular organisms → Bacteria	2448	Open in IMG/M
3300027903\|Ga0209488_10739270	Not Available	702	Open in IMG/M
3300027903\|Ga0209488_10753440	Not Available	694	Open in IMG/M
3300028536\|Ga0137415_10869743	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300029636\|Ga0222749_10203227	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	991	Open in IMG/M
3300029636\|Ga0222749_10560356	All Organisms → cellular organisms → Bacteria → Acidobacteria	622	Open in IMG/M
3300031753\|Ga0307477_10582157	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	755	Open in IMG/M
3300031754\|Ga0307475_10037056	All Organisms → cellular organisms → Bacteria	3588	Open in IMG/M
3300032174\|Ga0307470_11495726	All Organisms → cellular organisms → Bacteria → Acidobacteria	561	Open in IMG/M
3300032180\|Ga0307471_103252728	All Organisms → cellular organisms → Bacteria → Acidobacteria	576	Open in IMG/M
3300032180\|Ga0307471_103721208	Not Available	539	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.06%
Host-Associated	Host-Associated	0.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.06%
Fungi	Host-Associated → Fungi	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.06%
Mycelium	Host-Associated → Fungi → Mycelium	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	93.40%
Loam	Environmental → Terrestrial → Soil → Loam	5.66%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	64.15%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.09%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.15%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.77%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.94%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	60.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.49%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.60%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.77%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012169	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC074 MetaG	Host-Associated	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300024290	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_103837741	3300001593	Forest Soil	MRKLNALLILCFALLFASTVYGQTGVNNAELNGNYAFTFNGM
JGI12635J15846_108303511	3300001593	Forest Soil	MRKLNALLMVCFALVFASTAQGQTNTGVNNAELNGNYAFTFNGLTGNAN
JGI12053J15887_104247082	3300001661	Forest Soil	MRKLSALLNLCFALLFAATVHGQTNPGVNNAELNGNYA
JGI25388J43891_10418451	3300002909	Grasslands Soil	MRKLNALLMVCFALVFASTVQGQNGVNNAELNGNYAFTFNGLTGNA
JGI25616J43925_103054392	3300002917	Grasslands Soil	MSKLRVLLILCFTLFLGLPVLGQTGVNNAELNGNYAFTFTGISGNGTASSAFGAM
Ga0066673_108792321	3300005175	Soil	MFQASLKLNALLFMCFALLLASTVRGQTSGVNNAELNGDY
Ga0066688_107560271	3300005178	Soil	MFQASLKLNALLFMCFALLLASTVRGQTSGVNNAELNGDYAFTFNGF
Ga0070699_1013148231	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLKVHLLLCFALLFASTVHGQANTGVNDSALNGDYAFTFSGI
Ga0066701_106236021	3300005552	Soil	MRKLNALLILCFALLLASTVHGQTGVNNAEMNGSYAF
Ga0066693_100259514	3300005566	Soil	MRKLNAVLLLCLALLFGSNVQAQTNSGVNNAELNGNYAFMFSGVTGNSG
Ga0066651_100978733	3300006031	Soil	MRKLNAVLLLCLALLFGSNVQAQTNSGVNNAELNGNYAF
Ga0099793_100738751	3300007258	Vadose Zone Soil	MRKLNALLILCFALVFASAVQGQNNTGANNAELNGN*
Ga0099794_103668871	3300007265	Vadose Zone Soil	MRKLNALLILCFALAFALTTQGQTAPGVNNAELNGDYAFTF
Ga0099794_106004431	3300007265	Vadose Zone Soil	MRKLNALLILCFALLFAATVQGQTNPGVNNAELNGNYAFTFNGFRGNGTVSSV
Ga0066710_1010674491	3300009012	Grasslands Soil	MRKLNALLILYFSFVFASTVQGQTNAGVNNAELNGDYTFTFN
Ga0099829_107412782	3300009038	Vadose Zone Soil	MSKLNALLIACFALVLASTARAQNSPGANNAELNGDYAFT
Ga0099830_101718731	3300009088	Vadose Zone Soil	MRKLIVLLIGCFTLVLASMVRAQNPGVNNAELNGDYAFTFNGIT
Ga0099830_102951831	3300009088	Vadose Zone Soil	MEERKMRKLNVLLILCFALAFASIAQGQSNNAALNGNYAFN
Ga0099830_115136351	3300009088	Vadose Zone Soil	MEERKMRKLNVLLILCFALAFASIAQGQSNNAALNGNYAFNFTGVSGNG
Ga0099792_100798644	3300009143	Vadose Zone Soil	MEERKMRKLNVLLILCFALVFASTVHGQTGVNNAELNGSYAFSFSGH
Ga0099792_104676361	3300009143	Vadose Zone Soil	MRKLNILLTVCFALVFASTAQPQSPAGVNNAELSGNYAFTFNGMTTGG
Ga0099796_103748841	3300010159	Vadose Zone Soil	MRKLNILLTVCFALVFASTAQPQSPAGVNNAELSGNYAFTFNGMTTG
Ga0134062_105629661	3300010337	Grasslands Soil	MRKLNALLVVCFALVFASTVQGQNGVNNAELNGNYAFKF
Ga0137392_110291632	3300011269	Vadose Zone Soil	MKNLVALLIGCFGLMFASAARAQNTPGVNNAELNGD
Ga0137391_101971063	3300011270	Vadose Zone Soil	MRKLIALLIGCFALVLTSTVQAQNAPGVSNAELNGDYAFTFNG
Ga0137391_101978512	3300011270	Vadose Zone Soil	MKKLNALLLVCFAWIFASTVRAQTSGVNDAELKGDY
Ga0137391_102230612	3300011270	Vadose Zone Soil	MRKLNALLIVCFALVFASTVQGQTNAGVNNAELNGNYAFTF
Ga0137389_101534353	3300012096	Vadose Zone Soil	MKKLMALLIGCFASLFTSTMRAQSAPGVNNAELNGDY
Ga0137389_112073411	3300012096	Vadose Zone Soil	MRKLNALLILCFALLLGPTVHGQTGVNNAKLNGDYAFTFTGVSGNG
Ga0137389_113431771	3300012096	Vadose Zone Soil	MKKLNALLFVCFAAVFASTARAQTSGVNNAELNGNYTFNFNG
Ga0153990_11253612	3300012169	Attine Ant Fungus Gardens	MRKLSVLLIVCFALLFASTVQGQTNAGVNNGELHGDY
Ga0137388_101422673	3300012189	Vadose Zone Soil	MRNLKAHLLLFFALLSASTVHGQTNTGVNNAALNAN
Ga0137364_107089432	3300012198	Vadose Zone Soil	MFQASLKLNALLFMCFALLLASTVRGQTSGVNNAELNGDYAFTFN
Ga0137382_106041852	3300012200	Vadose Zone Soil	MRKLNALLIVYFALVFASKVQGQTNAGVNDAELNGNYAFTFNGLTG
Ga0137363_102026543	3300012202	Vadose Zone Soil	MRKLNVLLISLFALFFVASVHGQTGVNDAALNGNYAF
Ga0137399_100947342	3300012203	Vadose Zone Soil	MRKLNVLLIVCFAAVLASSVRAQTSGVNNAELNGNYAFTF
Ga0137399_105815661	3300012203	Vadose Zone Soil	MRKLKALPILCFALVFASAVQGQTNTGVNNAEMNGNYAF
Ga0137399_106673251	3300012203	Vadose Zone Soil	MRKLNALLILCFALLFAATVQGQTNPGVNNAELNGNYAFTFNGFSGNTS
Ga0137399_110923242	3300012203	Vadose Zone Soil	MRKLIALLIGCFALVLASTVRAQNAPGVNNAELNGDYAFTF
Ga0137399_115843602	3300012203	Vadose Zone Soil	MEERKMRKLNVLLILCFALAFASMAQGQSNNAALNGNYAFNFTGVSGNGT
Ga0137362_106739831	3300012205	Vadose Zone Soil	MRKRNALLTVCFAAVLGSTVRAQTSGVNNAELNGNYA
Ga0137362_108922122	3300012205	Vadose Zone Soil	MRKLSALLILCFALLFASTVQGQSNTGVNNASLNGNYAFNFNGI
Ga0137362_115713591	3300012205	Vadose Zone Soil	MRKLNALLILCFALLFAATVQGQTNPGVNNAELNGNYAFTFNG
Ga0137387_104663552	3300012349	Vadose Zone Soil	MKKLNALLFMCFAAVFASPVQAQTSGVNNAELNGNYTLNFNGFSVG
Ga0137360_100304041	3300012361	Vadose Zone Soil	MKKLNTLLFVCFAAVFPSTVRAQTSGVNNAELNGNYTFNFNGFSVGVVGI
Ga0137360_115269111	3300012361	Vadose Zone Soil	MEERKMRKLNVLLILCFALVFASIAQGQSNNAALNG
Ga0137398_112560771	3300012683	Vadose Zone Soil	MRKLIALLFGCLALVVVSTVRTQNGMNNAELSGDYAFTFN
Ga0137397_100507892	3300012685	Vadose Zone Soil	MRKLNALLILCFALLFASTVQGQTNTGVNNASLNGNYAFTFNGISGNG
Ga0137397_100699663	3300012685	Vadose Zone Soil	MRKLKALLTLCFGLLCISTIQGQTNGGPNNAELNGDYA
Ga0137397_108929781	3300012685	Vadose Zone Soil	MRNLNPLPIALFALLFASTVQGQTNTGVNNAELNG
Ga0137396_102136871	3300012918	Vadose Zone Soil	MRKLNALLVLCFVFFFVSTVQCQTNTGANNAELNGNYAF
Ga0137394_104259142	3300012922	Vadose Zone Soil	MRKLKALLTLCFGLLCISTIQGQTNGGPNNAELNGDYAFTFSGI
Ga0137413_103293631	3300012924	Vadose Zone Soil	MRKLNVLLILCFALVFASIAQGQSNNAELNGNYAFNFSGVSG
Ga0137419_111706031	3300012925	Vadose Zone Soil	MRKLNALLIVCLALVFASTVQGQTNAGVNNAELNGNYAFTFNGLTGN
Ga0137416_101486031	3300012927	Vadose Zone Soil	MRKLNALLILCFALAFASAVQGQNNTGANNAELNGNYAFSFNGF
Ga0137416_101573581	3300012927	Vadose Zone Soil	MEERKMRKLNVLLILCFALVFASIAQGQSNNAALNGNYTFNFTGVSGNGAVSSVFGA
Ga0137404_101757061	3300012929	Vadose Zone Soil	MRKLIALLIGCFVLVLTSTVRAQNAPGVNNAELNGNYAFT
Ga0137404_118618302	3300012929	Vadose Zone Soil	MRKLIVLLIGCFTLVLASMARAQNPGVNNAELNGDYAFTFNGITG
Ga0137404_120705841	3300012929	Vadose Zone Soil	MRKLNALRIMCFALFLASTVRAQTAPGVNNAELHGDYAFTFNGMTTG
Ga0134075_102200892	3300014154	Grasslands Soil	MRKLNALLILCFALLLASTVHGQTGVNNAEMNGSYAFTFTGISGNGTV
Ga0134078_104523541	3300014157	Grasslands Soil	MRKLNAVLLLCLALLFGSNVQAQTGSGVNNVELNGNYAF
Ga0137405_10521421	3300015053	Vadose Zone Soil	MEERKMRKLNVLLILCFALVFASIAQGQSNNAALNGNYAFNFTGVSGGMG
Ga0137405_10521432	3300015053	Vadose Zone Soil	MEERKMRKLNVLLILCFALVFASIAQGQSNNAALN
Ga0137405_12047862	3300015053	Vadose Zone Soil	MEERKMRKLNVLLILCFALVFASIAQGQSNNAALNGNYAFNFTGVSGNGA
Ga0137405_12826281	3300015053	Vadose Zone Soil	MEERKMRKLNVLLILCFALVFASIAQGQSNNAALNGNYAFNFTGVSGNGAVA*
Ga0137405_12826292	3300015053	Vadose Zone Soil	MEERKMRKLNVLLILCFALVFASIAQGQSNNAALNGNYAFNFTGV
Ga0137405_13913539	3300015053	Vadose Zone Soil	MRKLNVLLILCFALVFASIAQGQSHNAALNVTIV*
Ga0137420_12939281	3300015054	Vadose Zone Soil	MRKLNALLILCFALLFASAVYGQTGVNNAELNGNYAFTFSGMSGNTDRS
Ga0137420_14020817	3300015054	Vadose Zone Soil	MRKLNALLILCFGLLFASGVYGQAGVNNAELNGNYAFTFNG*
Ga0137403_102208813	3300015264	Vadose Zone Soil	MRKLIALLIGCFVLVLTSTVRAQNAPGVNNAELNGNYAFTCNGFSGNLATSS
Ga0134083_100310213	3300017659	Grasslands Soil	MHKLNALLLLCLALVFAANVQAQSNSGVNNAELNGNYAFTFS
Ga0066667_100194774	3300018433	Grasslands Soil	MRKLNALLMVCFALVFASTVQGQNGVNNAELNGNYAFTFNGLTGNAN
Ga0066669_111486821	3300018482	Grasslands Soil	MRKLNALLIVYFALVFASTVQGQTNAGVNNAELNGNYAFTFNGLTGNAN
Ga0179592_100017057	3300020199	Vadose Zone Soil	MRKLNALLMVCFALIFASTVQGQTNTGVNNAELNGNYAF
Ga0179592_101490223	3300020199	Vadose Zone Soil	MRKLNALLILSFALALTSTVQGQTNPGVNNAELHGNYAFTFTG
Ga0210407_100863671	3300020579	Soil	MKKLNALLFVCFAAVLASTVRAQTSGVNNAELNGNYTFNFNGF
Ga0210403_108345481	3300020580	Soil	MHKLNVLLFLLFALLLVPTAQGQAGVNNAKLNGDYAFS
Ga0210403_112032691	3300020580	Soil	MRKLIALLIGCLALVLASTVRAQNNAELNGDYAFTF
Ga0210383_107217691	3300021407	Soil	MRKLSALLILCFALLFDSTVRGQNNTGVSNAELNGN
Ga0210384_101930661	3300021432	Soil	MRKLNVLLFGLFALFLASAVRAQTGVNNAKLNGDYAFGF
Ga0247667_10406092	3300024290	Soil	MRKLNALLLLWFALFFVLRVQGQTSTGVNNAELNGN
Ga0137417_13000231	3300024330	Vadose Zone Soil	MRKLNALLMVCFALVFASTVQGQTTVQGQTNTGVN
Ga0137417_14814652	3300024330	Vadose Zone Soil	MRELNALLTMSFALVLASTVRAQSTPGVNNAELKGDYAFTSTG
Ga0209468_10950842	3300026306	Soil	MRKLNAVLLLCLALLFGSNVQAQTNSGVNNAELNGNYA
Ga0209471_10579163	3300026318	Soil	MRKLYALLILCFALLFASKVQGQTSSGVNNAALNGNYAFTFD
Ga0209131_11776661	3300026320	Grasslands Soil	MRKLNVLLILCFALAFASIAQGQSNNAELNGNYAFNFT
Ga0209472_12431491	3300026323	Soil	MRKLNALLIVYFALVFASTVQGQTNAGVNNAELNGNYAFTFN
Ga0209152_100691583	3300026325	Soil	MFQASLKLNALLFMCFALLLASTVRGQTSGVNNAELNGD
Ga0257156_10848342	3300026498	Soil	MRKWNALLALVFALFFVSAVRGQTGVNNAALNGSYAFTFNGMS
Ga0257161_10955711	3300026508	Soil	MRKLSALLNLCFALLFAATVQGQTNPGVNNAELNGNYAFTFNGFSGNTSVSSV
Ga0209376_11182712	3300026540	Soil	MFQASLKLNALLFMCFALLLASTVRGQTSGVNNAELNGDYAFTFNG
Ga0209648_107697702	3300026551	Grasslands Soil	MRKRNALLIVCFAAVLASTVRAQTSGVNDAELNGNYAFTFR
Ga0209220_10570712	3300027587	Forest Soil	MRKLNALLILVFALLFASTVYGQTGVNNAELNGNYAFTFNGMS
Ga0209076_11122471	3300027643	Vadose Zone Soil	MRKWNALLILVFALFFSSTVHGQTGANNAAMNGNYAFTFNGM
Ga0209588_12495121	3300027671	Vadose Zone Soil	MRKLNALLIVCFALVLVPMVRAQNTPGVNNAELKGNYAFTFNGFS
Ga0209180_100439772	3300027846	Vadose Zone Soil	MRKLIALLIGCFALVLTSPVRAQNAPGVSNAELNGDYAFTF
Ga0209488_107392703	3300027903	Vadose Zone Soil	MRKLNVLLILCFALVFASTVHGQTGVNNAELNGSYAFSFSGH
Ga0209488_107534402	3300027903	Vadose Zone Soil	MRKLNILLTVCFALVFASTAQPQSTAGVNNAELSGNY
Ga0137415_108697431	3300028536	Vadose Zone Soil	MRKLNALLIVCFALVLVPMVRAQNTPGVNNAELKGNYAFTF
Ga0222749_102032271	3300029636	Soil	MRKLNALLILSFALALTSTVQGQTSPGVNNAELNGNYAF
Ga0222749_105603561	3300029636	Soil	MRTLNALLTFCLAVLFTSTAQGQTNTGVNNAELNGDYAFTFSGIS
Ga0307477_105821571	3300031753	Hardwood Forest Soil	MRKLNAPLILCFALLLASAVHGQTNTGVNNAELNGDYAFTFNGISG
Ga0307475_100370564	3300031754	Hardwood Forest Soil	MKKLNALLFVCFAAVFASTVQAQTSGVNNAELNGNYTLNF
Ga0307470_114957262	3300032174	Hardwood Forest Soil	MRKLSVLLILCFVLLFASTVQGQTTAGVNNAELNGDYAFTFSGIS
Ga0307471_1032527281	3300032180	Hardwood Forest Soil	MRKWNVVLAVFFTLIFVSAARGQTGVNNAELNGNYAFTFSGMSGNGN
Ga0307471_1037212081	3300032180	Hardwood Forest Soil	MRKLIALLIGCFTLVLASTVRAQNPGVNNAELNGD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093327

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences