NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F093281

Metagenome Family F093281

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F093281
Family Type Metagenome
Number of Sequences 106
Average Sequence Length 43 residues
Representative Sequence MKKIDMGKYILLIGNDATEIFDYYKVPEMHGLNRADAQAEEVDMT
Number of Associated Samples 74
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 17.92 %
% of genes near scaffold ends (potentially truncated) 99.06 %
% of genes from short scaffolds (< 2000 bps) 87.74 %
Associated GOLD sequencing projects 71
AlphaFold2 3D model prediction Yes
3D model pTM-score0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (89.623 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(42.453 % of family members)
Environment Ontology (ENVO) Unclassified
(62.264 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(64.151 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62
1JGI12421J11937_100596441
2JGI25910J50241_100407931
3JGI25910J50241_100460901
4JGI25911J50253_100545521
5Ga0031658_10100054
6Ga0031658_10155293
7Ga0063233_100632925
8Ga0070374_104309821
9Ga0068876_103036141
10Ga0068872_103602261
11Ga0049083_100086518
12Ga0049083_102807111
13Ga0049080_100424651
14Ga0049080_102914062
15Ga0102917_12170531
16Ga0102921_12667623
17Ga0114876_10380553
18Ga0105103_106133741
19Ga0114918_1000560128
20Ga0129333_102091931
21Ga0129333_102369894
22Ga0136713_10478571
23Ga0153805_10628213
24Ga0177922_110016681
25Ga0181338_10137791
26Ga0181338_10232653
27Ga0181338_10405051
28Ga0181338_10492982
29Ga0181339_10045444
30Ga0181339_10270941
31Ga0181363_10900792
32Ga0181350_10119451
33Ga0181350_10138731
34Ga0181350_10307732
35Ga0181350_11260841
36Ga0181352_11340871
37Ga0181343_12085981
38Ga0181357_10775401
39Ga0181357_11180131
40Ga0181349_12910511
41Ga0181346_10956623
42Ga0181346_13045542
43Ga0181348_10903721
44Ga0181348_11936581
45Ga0181348_12685131
46Ga0181355_10832753
47Ga0181355_13189542
48Ga0181361_1066311
49Ga0181361_1203061
50Ga0181359_11921441
51Ga0211736_107323103
52Ga0211733_111153541
53Ga0211733_112081363
54Ga0211735_109282091
55Ga0211735_109285821
56Ga0211735_1111362611
57Ga0207911_1135413
58Ga0181354_10731631
59Ga0181351_11326621
60Ga0209616_10182621
61Ga0209247_10022415
62Ga0209864_10040271
63Ga0208966_10213635
64Ga0208974_10887704
65Ga0208975_10286724
66Ga0209443_11000112
67Ga0209442_10666601
68Ga0209442_10911802
69Ga0209442_11126241
70Ga0209442_11904321
71Ga0209297_13653042
72Ga0209355_10762221
73Ga0209355_10982523
74Ga0209246_103264093
75Ga0209354_101759483
76Ga0209230_106508363
77Ga0209668_108990111
78Ga0209401_11924822
79Ga0307380_113523461
80Ga0307379_111553693
81Ga0307375_107941322
82Ga0315291_1003752315
83Ga0315293_109774172
84Ga0315899_102808806
85Ga0315290_106976081
86Ga0315290_113947841
87Ga0315909_101416144
88Ga0315909_106029045
89Ga0315909_109922852
90Ga0315294_109678592
91Ga0315274_114447331
92Ga0315906_113273982
93Ga0315284_100589071
94Ga0315284_102848907
95Ga0315284_112284272
96Ga0315284_112737993
97Ga0315284_122664013
98Ga0315905_101081817
99Ga0315902_101992774
100Ga0315283_109598151
101Ga0315275_122489183
102Ga0334722_112227441
103Ga0334977_0528823_1_138
104Ga0334986_0050985_1_126
105Ga0335031_0179874_1324_1443
106Ga0335068_0149220_1107_1265
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 21.92%    β-sheet: 16.44%    Coil/Unstructured: 61.64%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

51015202530354045MKKIDMGKYILLIGNDATEIFDYYKVPEMHGLNRADAQAEEVDMTSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.56
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains




 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
10.4%89.6%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater Sediment
Freshwater
Freshwater Lake
Freshwater Lentic
Freshwater And Sediment
Freshwater And Sediment
Freshwater Lake Sediment
Freshwater
Freshwater Lake
Freshwater Lake
Freshwater
Sediment
Freshwater
Freshwater
Surface Ice
Deep Subsurface
Freshwater To Marine Saline Gradient
Estuarine
Sand
Soil
42.5%6.6%2.8%3.8%6.6%13.2%6.6%2.8%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12421J11937_1005964413300000756Freshwater And SedimentMKKIDMGKYLLLIGNDATEIFDYYKVPEMHGLNRADAQA
JGI25910J50241_1004079313300003388Freshwater LakeMKKIDMGKYLLLIGKDATEIFDYYNVKEMHGLNRADAQAEE
JGI25910J50241_1004609013300003388Freshwater LakeMKKIDMGKYILLIGNDATEVFDYYNVEEMHGLNRADAQAEEVDMTTPKDGDQG
JGI25911J50253_1005455213300003411Freshwater LakeMKKIDMGKYILLIGNDATEVFDYYNVEEMHGLNRADAQAEEVDMTTPKDGD
Ga0031658_101000543300003860Freshwater Lake SedimentMKKIDMGKYIVLIGNDATEIFDYYNVPEMHGLNRQDAQAEEVDKTK
Ga0031658_101552933300003860Freshwater Lake SedimentMKKIDMGKFVLLIGKDATEIFDYYNVDQMHGLNRKDAQAEEVDKT
Ga0063233_1006329253300003986Freshwater LakeVQDIINFDMGDYILIIGKDATDIFKFYNVKEMHGLNLKDAQAEEVD
Ga0070374_1043098213300005517Freshwater LakeMNIREFDMGKYILLIGKDATDIFKYYKVKEMHGLNLKDAQAE
Ga0068876_1030361413300005527Freshwater LakeMKKIDMGKFVLLIGKDATEIFDYYDVDQMHGLNRKDAQAEEV
Ga0068872_1036022613300005528Freshwater LakeMKKFDMGKYVLLAGNNATEIFDYYDVDEMHGLNRKDAQAEEVDKTVGNRV
Ga0049083_1000865183300005580Freshwater LenticMKKIDMGKYLLLIGKDATEIFDYYNVEEMHGLNRADAQAEEVDMTTPKDGDQGNGV
Ga0049083_1028071113300005580Freshwater LenticMKKVDMGKYILLIGNDATEIFDYYKVPEMHGLNRADAQAEEVDL
Ga0049080_1004246513300005582Freshwater LenticMKKIDMGKYLLLIGKDATEIFDYYNVKEMHGLNRADAQA
Ga0049080_1029140623300005582Freshwater LenticVKKIDMGKYILLIGNDATEVFDYYKVEEMHGLNRADAQAEEVD
Ga0102917_121705313300007590EstuarineMKKIDMGEYILLAGNNATEIFDYYKVDEMHGLNRKDAQAEEVDKT
Ga0102921_126676233300007603EstuarineMNIKEFDMGKYILLIGKDATDIFKYYKVKEMHGLNLKDAQAEEVDK
Ga0114876_103805533300008448Freshwater LakeMKKIDMGEFVLLIGKDATEIFDYYGVKEMHGLKRKDAQAEEIDKTTGNGVYI
Ga0105103_1061337413300009085Freshwater SedimentMKKVDMGKFVLLIGKDATEIFDYYSVDKMHGLNRNDAQA
Ga0114918_10005601283300009149Deep SubsurfaceMKKIDMGKYILLIGNDATEIFDYYKVPEMHGLNRADAQAE
Ga0129333_1020919313300010354Freshwater To Marine Saline GradientMKKFDMGKYVLLAGDNATEIFDYYKVEEMHGLNRKDAQ
Ga0129333_1023698943300010354Freshwater To Marine Saline GradientMKKIDMGKYIVLIGNDATEIFDYYNVPEMHGLNRQDAQAEEVDKTKGNGVY
Ga0136713_104785713300011183FreshwaterMKKIDMGKFVLLIGKDATEIFDYYGVDQMHGLNRKDAQAEEVDK
Ga0153805_106282133300012013Surface IceMKKIDMGKYLLLIGKDATEIFDYYNVKEMHGLNRADAQAEEVDKTVG
Ga0177922_1100166813300013372FreshwaterMGKYILLIGNDATEIFDYYKVPEMHGLNRADAQAEEVDMTTPKNGDQGNG
Ga0181338_101377913300015050Freshwater LakeMKKVDMGKYILLIGNDATEVFDYYKVEEMHGLNRADAQ
Ga0181338_102326533300015050Freshwater LakeMKKIDMGKYILLIGNDATEIFDYYKVPEMHGLNRADAQTEEVDLSKGNGVYI
Ga0181338_104050513300015050Freshwater LakeMKKVNMGEYILLIGNDATEIFDYYKVDAMHGLNRKDAQ
Ga0181338_104929823300015050Freshwater LakeVKKVDMGKYILLIGNDATEIFDYYKVPEMHGLNRADAQAEEVDMTTLK
Ga0181339_100454443300017700Freshwater LakeMKKVDMGKYILLIGNDATEVFDYYKVEEMHGLNRADAQAEEV
Ga0181339_102709413300017700Freshwater LakeMGKYILLIGNDATEIFDYYKVPEMHGLNRADAQAEEVDFSL
Ga0181363_109007923300017707Freshwater LakeMKEYDMGKYILIAGNNATEIFDYYDVTEMHGLNRKDAQAEE
Ga0181350_101194513300017716Freshwater LakeMKKVDMGKYILLIGNDATEVFDYYKVEEMHGLNRA
Ga0181350_101387313300017716Freshwater LakeMKKIDMGKYILLIGNDATEVFDYYNVEEMHGLNRADAQAEEVDMTTPKDGDQGN
Ga0181350_103077323300017716Freshwater LakeMKKIDMGKYILLIGNDATEIFDYYKVPEMHGLNRADAQAEEVDLSKG
Ga0181350_112608413300017716Freshwater LakeVKKVDMGKYILLIGNDATEIFDYYKVPEMHGLNRADAQAEEVDLSK
Ga0181352_113408713300017747Freshwater LakeMKKYDMGKYVLLAGEDATTIFDYYDVEEMHGLNRTDAQAEEVDKTVGNG
Ga0181343_120859813300017766Freshwater LakeMKKVDMGKYVLLAGKDATEIFDYYKVDEMHGLNRDDAQAEEVDKSKGNGVYI
Ga0181357_107754013300017777Freshwater LakeMKKVDMGKYILLIGNDATEVFDYYKVEEMHGLNRADAQAEEVDMTTPKKGDQGNG
Ga0181357_111801313300017777Freshwater LakeMKKIDMGKYILLIGKDATEIFDYYKVEEMHGLNRADAQAEEVDKTVG
Ga0181349_129105113300017778Freshwater LakeMKKFDMGKYILLAGNNAVEIFDYYKVDEMHGLNRKDAQAE
Ga0181346_109566233300017780Freshwater LakeVKKIDMGKYILLIGNDATEVFDYYKVEEMHGLNRADAQAEEVDKTVGNGVYI
Ga0181346_130455423300017780Freshwater LakeMKKIDMGKYILLIGNDATEIFDYYKVPEMHGLNRADAQTE
Ga0181348_109037213300017784Freshwater LakeVKKIDMGKYILLIGNDATEVFDYYKVEEMHGLNRADAQA
Ga0181348_119365813300017784Freshwater LakeVKKVDMGKYILLIGNDATEIFDYYKVPEMHGLNRADAQAEEVDLSKGNGVY
Ga0181348_126851313300017784Freshwater LakeMKKIDMGKYVLLIGNDATEIFDYYKVPEMHGLNRADAQAEEVDKT
Ga0181355_108327533300017785Freshwater LakeMKKVDMGKYILLIGNDATEVFDYYKVEEMHGLNRADAQAEEVD
Ga0181355_131895423300017785Freshwater LakeMGKYILLIGNDATEIFDYYKVPEMHGLNRADAQAEEVDMTNSKDGDQ
Ga0181361_10663113300019783Freshwater LakeMKKIDMGKFILLVGKDATEIFDYYNVDKMHGLNRK
Ga0181361_12030613300019783Freshwater LakeMKKIDMGKYVLLIGNDATEIFDYYKVPEMHGLNRADF
Ga0181359_119214413300019784Freshwater LakeMGKYILLIGNDATEIFDYYKVPEMHGLNRADAQAEE
Ga0211736_1073231033300020151FreshwaterMKKFDMGKYILLVGNDATEIFDYYKVPEMHGLNLADAKAEEVD
Ga0211733_1111535413300020160FreshwaterMKKVDMGKYILLIGNDATEVFDYYKVEEMHGLNRAD
Ga0211733_1120813633300020160FreshwaterVKKIDMGKYILLIGNDATEVFDYYKVEEMHGLNRAD
Ga0211735_1092820913300020162FreshwaterMKKVDMGKYILLIGNDATEVFDYYKVEEMHGLNRADAQAEEVDKTV
Ga0211735_1092858213300020162FreshwaterVKKIDMGKYILLIGNDATEVFDYYKVEEMHGLNRADAQAEEVDKTV
Ga0211735_11113626113300020162FreshwaterMKKFDMGKYILLVGNDATEIFDYYKVPEMHGLNLADAKAEE
Ga0207911_11354133300020481FreshwaterMNIKEFDMGKYILLIGKDATDIFKYYKVKEMHGLNLKD
Ga0181354_107316313300022190Freshwater LakeMKKIDMGKFVLLIGKDATEIFDYYDVDQMHGLNRKDA
Ga0181351_113266213300022407Freshwater LakeMKKIDMGKFILLVGKDATEIFDYYNVDKMHGLNRKEA
Ga0209616_101826213300025091FreshwaterMKKIDMGKFVLLIGKDATEIFDYYGVDQMHGLNRKDAQAEEVDKTKGNGIYI
Ga0209247_100224153300027468Freshwater LakeMKKIDMGKYILLIGKDATEIFDYYKVPEMHGLNRAD
Ga0209864_100402713300027547SandMGKYILLIGNDATEIFDYYKVPEMHGLNRADAQAEEVDLSKGNG
Ga0208966_102136353300027586Freshwater LenticMKKIDMGKYLLLIGKDATEIFDYYNVEEMHGLNRADAQAEEVDMT
Ga0208974_108877043300027608Freshwater LenticMKKIDMGKYLLLIGKDATEIFDYYNVKEMHGLNRADAQ
Ga0208975_102867243300027659Freshwater LenticMKKIDMGDYVLLAGRNATEIFDHYNVPEMHGLNLADAKSEEVDKT
Ga0209443_110001123300027707Freshwater LakeMKKVDMGKYILLIGNDATEVFDYYKVEEMHGLNRADAQAEK
Ga0209442_106666013300027732Freshwater LakeMDIKEFDMDKYILLVGKNATDIFKYYKVKEMHGLNLKDA
Ga0209442_109118023300027732Freshwater LakeMKKVDMGKYILLIGNDATEVFDYYKVEEMHGLNRADAQAEEVDKT
Ga0209442_111262413300027732Freshwater LakeMKKIDMGKFILLVGKDATEIFDYYNVDKMHGLNRKEAQAEEVDFTNKKKGD
Ga0209442_119043213300027732Freshwater LakeMGKYILLIGNDATEIFDYYKVPEMHGLNRADAQAE
Ga0209297_136530423300027733Freshwater LakeMKKVDMGKYILLIGNDATEVFDYYKVDEMHGLNRADAQAEEVDMT
Ga0209355_107622213300027744Freshwater LakeMKKVDMGKYILLIGNDATEVFDYYKVEEMHGLNRADAQA
Ga0209355_109825233300027744Freshwater LakeMGKYILLIGNDATEIFDYYKVPEMHGLNRADAQAEEVDLSKGNGVY
Ga0209246_1032640933300027785Freshwater LakeMKKVNMGEYILLIGNDATEIFDYYKVDAMHGLNRKDAQA
Ga0209354_1017594833300027808Freshwater LakeMGKYILLIGNDATEIFDYYKVPEMHGLNRADAQAEEV
Ga0209230_1065083633300027836Freshwater And SedimentMKKIDMGKYLLLIGKDATEIFDYYKVPEMHGLNRADAQAEEVDL
Ga0209668_1089901113300027899Freshwater Lake SedimentMGDFVLLIGKDATEIFDYYGVDKMHGLNRADAQAEEVDKTVG
Ga0209401_119248223300027971Freshwater LakeMKKIDMGKYILLIGNDATEIFDYYKVPEMHSLNRADAQAEEVDM
Ga0307380_1135234613300031539SoilVKKIDMGKYILLIGNNATEIFDYYKVPEMHGLSRADAQA
Ga0307379_1115536933300031565SoilMKKVDMGKYILLIGNDATEIFDYYKVDEMHGLNRA
Ga0307375_1079413223300031669SoilMKKIDMGKYILLIGNDATEIFDYYKVPEMHGLNRADAQAEEVDMTTP
Ga0315291_10037523153300031707SedimentMGKYILFAGNNATEIFDYYKVDEMHGLNRKDAQAEEVDKTTPKKGDEG
Ga0315293_1097741723300031746SedimentMGKYVLLAGNNATEIFDYYKVDEMHGLNRKDAQAEEVDKTKGNGVY
Ga0315899_1028088063300031784FreshwaterMGDYVLLAGDDATEIFDYYKVDEMHGLNRKDAQAEEVDKTVGNGVYI
Ga0315290_1069760813300031834SedimentMKKIDMGKYXLLIGKDATEIFDYYKVPEMHGLNRADAQAE
Ga0315290_1139478413300031834SedimentMKKIDMGKYLLLIGNDATEIFDYYKVPEMHGLNRADAQAEEV
Ga0315909_1014161443300031857FreshwaterMKKIDMGEYVLLIGKNATEIFDYYDVEEMHGLNRNDAQ
Ga0315909_1060290453300031857FreshwaterMGKYILVIGKDATDIFKFYNVDKMHGLNLKDAIAEEI
Ga0315909_1099228523300031857FreshwaterMKKYDMGKYILLAGNNATEVFDHYGVKEMHGLNRKDAQA
Ga0315294_1096785923300031952SedimentMGKYILLIGNDATEIFDYYKVPEMHGLNRADAQAEEVDMTNPKNGDQGNG
Ga0315274_1144473313300031999SedimentMKKFDMGKYILFAGNNATEIFDYYKVDEMHGLNRKDAQTE
Ga0315906_1132739823300032050FreshwaterMKEYDMGKYILIAGNNATEIFDYYDVTEMHGLNRKDAQAEEV
Ga0315284_1005890713300032053SedimentMKKVDMGKYILLIGNDATEVFDYYKVEEMHGLNRADAQAEE
Ga0315284_1028489073300032053SedimentMGKYILFAGNNATEIFDYYKVDEMHGLNRKDAQAEEVDKTTPKKGDEGNGV
Ga0315284_1122842723300032053SedimentMKKIDMGKYILLIGNDATEIFDYYKVPEMHGLNRADAQAEEVDMT
Ga0315284_1127379933300032053SedimentMKKIDMGKYLLLIGKDATEIFDFYNVKEMHGLNRADAQAEEVD
Ga0315284_1226640133300032053SedimentMKKIDMGKYILLIGKDATEIFDYYNVKEMHGLNRADAQAEEVDL
Ga0315905_1010818173300032092FreshwaterMKKYDMGDYILLAGNDATEIFDYYSVDEMHGLNRKDAQAEEV
Ga0315902_1019927743300032093FreshwaterMGKYVLLAGNNATEIFDYYDVDEMHGLNLKDAKAEEVD
Ga0315283_1095981513300032164SedimentMKKIDMGKYILLIGNDATEIFDYYKVPEMHGLNRADAQAEEVDMTNPKNGDQ
Ga0315275_1224891833300032401SedimentMKKIDMGKYLLLIGNDATEVFDYYNVKEMHGLNRADAQ
Ga0334722_1122274413300033233SedimentMKKIDMGKYLLLIGKDATEIFDYYKVPEMHGLNRADAQAEEVDMTTPKNGDQ
Ga0334977_0528823_1_1383300033978FreshwaterMKEYDMGKYILIAGNNATEIFDYYDVTEMHGLNRKDAKAEEVDKTV
Ga0334986_0050985_1_1263300034012FreshwaterMRKYDMGKYVLLAGENATKIFDYYDVEEMHGLNRKDAQAEEV
Ga0335031_0179874_1324_14433300034104FreshwaterMKKFDMGKYILLIGNDATEIFDYYKVPEMHGLSRADAQAE
Ga0335068_0149220_1107_12653300034116FreshwaterMKKYDMGKYVLLAGDNATEIFDYYKVPEMHGLNRADAQAEEIDKIKGNGVYIY


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.