Metagenome / Metatranscriptome Family F093279

Basic Information
Family ID	F093279
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	43 residues
Representative Sequence	NSYVVLTQVSASLNFVDDTAAAAGGVPLGGLYRNGNFILIRIS
Number of Associated Samples	94
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	1.89 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Most Common Taxonomy
Group	Unclassified (99.057 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (22.642 % of family members)
Environment Ontology (ENVO)	Unclassified (49.057 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (54.717 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.45% β-sheet: 12.68% Coil/Unstructured: 78.87%
Feature Viewer

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Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF13884	Peptidase_S74	7.55
PF01391	Collagen	5.66
PF13385	Laminin_G_3	1.89
PF00959	Phage_lysozyme	0.94
PF13640	2OG-FeII_Oxy_3	0.94
PF10979	DUF2786	0.94

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.06 %
All Organisms	root	All Organisms	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.06 %
cellular organisms	root	All Organisms → cellular organisms	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.06 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.94 %

Scaffold	Taxonomy	Length	IMG/M Link
3300008107\|Ga0114340_1022562	Not Available	5066	Open in IMG/M
3300021365\|Ga0206123_10042427	All Organisms → cellular organisms → Bacteria	2427	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.06%
Host-Associated	Host-Associated	0.94%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.11%
Terrestrial	Environmental → Terrestrial	0.94%
Plants	Host-Associated → Plants	0.94%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	76.42%
Marine	Environmental → Aquatic → Marine	21.70%
Soil	Environmental → Terrestrial → Soil	0.94%
Leaf	Host-Associated → Plants → Leaf	0.94%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	31.13%
Lentic	Environmental → Aquatic → Freshwater → Lentic	27.36%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	10.38%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	5.66%
Unclassified	Environmental → Aquatic → Marine → Unclassified	4.72%
Pelagic	Environmental → Aquatic → Marine → Pelagic	3.77%
River	Environmental → Aquatic → Freshwater → River	2.83%
Ice	Environmental → Aquatic → Freshwater → Ice	2.83%
Oceanic	Environmental → Aquatic → Marine → Oceanic	2.83%
Coastal	Environmental → Aquatic → Marine → Coastal	2.83%
Lotic	Environmental → Aquatic → Freshwater → Lotic	1.89%
Strait	Environmental → Aquatic → Marine → Strait	1.89%
Clay	Environmental → Terrestrial → Soil → Clay	0.94%
Unclassified	Host-Associated → Plants → Leaf → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	29.25%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	26.42%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	10.38%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	4.72%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	4.72%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	3.77%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	2.83%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	2.83%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	1.89%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.94%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	0.94%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	0.94%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.94%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Leaf → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	22.64%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	10.38%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	9.43%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	8.49%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	4.72%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	4.72%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	2.83%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	2.83%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	2.83%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	2.83%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	2.83%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.89%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	1.89%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.89%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	1.89%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	1.89%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	1.89%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	1.89%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.94%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	0.94%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	0.94%
Marine Plankton	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton	0.94%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.94%
Surface Ice	Environmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice	0.94%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater	0.94%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	0.94%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	0.94%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	0.94%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.94%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.94%
Estuary	Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary	0.94%

Visualization

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001851	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3b	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003393	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD	Environmental	Open in IMG/M
3300003412	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD	Environmental	Open in IMG/M
3300004054	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (v2)	Environmental	Open in IMG/M
3300004112	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)	Environmental	Open in IMG/M
3300004128	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SN (version 2)	Environmental	Open in IMG/M
3300004776	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA14M	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental	Open in IMG/M
3300005805	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA	Environmental	Open in IMG/M
3300007618	Estuarine microbial communities from the Columbia River estuary - metaG 1554A-02	Environmental	Open in IMG/M
3300007639	Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02	Environmental	Open in IMG/M
3300007722	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (megahit assembly)	Environmental	Open in IMG/M
3300008055	Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393	Host-Associated	Open in IMG/M
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental	Open in IMG/M
3300008113	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA	Environmental	Open in IMG/M
3300008116	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA	Environmental	Open in IMG/M
3300008267	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR	Environmental	Open in IMG/M
3300009024	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705	Environmental	Open in IMG/M
3300009056	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3	Environmental	Open in IMG/M
3300009068	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG	Environmental	Open in IMG/M
3300009182	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG	Environmental	Open in IMG/M
3300009184	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG	Environmental	Open in IMG/M
3300009507	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607	Environmental	Open in IMG/M
3300009785	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130	Environmental	Open in IMG/M
3300010157	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG	Environmental	Open in IMG/M
3300010160	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG	Environmental	Open in IMG/M
3300010885	northern Canada Lakes Co-assembly	Environmental	Open in IMG/M
3300011010	Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice	Environmental	Open in IMG/M
3300011268	Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555	Environmental	Open in IMG/M
3300012013	Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface Ice	Environmental	Open in IMG/M
3300012528	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012936	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG	Environmental	Open in IMG/M
3300013005	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG	Environmental	Open in IMG/M
3300013136 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_11.5m	Environmental	Open in IMG/M
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental	Open in IMG/M
3300017722	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017727	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20	Environmental	Open in IMG/M
3300017761	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017774	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017777	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017784	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017786	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18	Environmental	Open in IMG/M
3300018424	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019122	Metatranscriptome of marine microbial communities from Baltic Sea - GS677_0p1	Environmental	Open in IMG/M
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental	Open in IMG/M
3300020141	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1	Environmental	Open in IMG/M
3300020151	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1	Environmental	Open in IMG/M
3300020183	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface	Environmental	Open in IMG/M
3300020185	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1	Environmental	Open in IMG/M
3300020578	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015038 Kigoma Deep Cast 35m	Environmental	Open in IMG/M
3300021093	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015023 Mahale A surface	Environmental	Open in IMG/M
3300021364	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304	Environmental	Open in IMG/M
3300021365	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1	Environmental	Open in IMG/M
3300021962	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D	Environmental	Open in IMG/M
3300021963	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D	Environmental	Open in IMG/M
3300022187	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)	Environmental	Open in IMG/M
3300022190	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N	Environmental	Open in IMG/M
3300023179	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300025072	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)	Environmental	Open in IMG/M
3300025704	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524 (SPAdes)	Environmental	Open in IMG/M
3300026459	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepA_8d	Environmental	Open in IMG/M
3300027121	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h	Environmental	Open in IMG/M
3300027229	Estuarine microbial communities from the Columbia River estuary - metaG 1549B-3 (SPAdes)	Environmental	Open in IMG/M
3300027597	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepB_8d	Environmental	Open in IMG/M
3300027608	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)	Environmental	Open in IMG/M
3300027631	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes)	Environmental	Open in IMG/M
3300027732	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)	Environmental	Open in IMG/M
3300027733	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027754	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027769	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)	Environmental	Open in IMG/M
3300027804	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)	Environmental	Open in IMG/M
3300027963	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental	Open in IMG/M
3300031758	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123	Environmental	Open in IMG/M
3300031759	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P	Environmental	Open in IMG/M
3300031787	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114	Environmental	Open in IMG/M
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental	Open in IMG/M
3300031951	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120	Environmental	Open in IMG/M
3300031952	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40	Environmental	Open in IMG/M
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental	Open in IMG/M
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental	Open in IMG/M
3300032093	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117	Environmental	Open in IMG/M
3300032116	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119	Environmental	Open in IMG/M
3300033994	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046	Environmental	Open in IMG/M
3300034061	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028	Environmental	Open in IMG/M
3300034093	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072	Environmental	Open in IMG/M
3300034104	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120	Environmental	Open in IMG/M
3300034112	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191	Environmental	Open in IMG/M
3300034117	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jun2014-rr0124	Environmental	Open in IMG/M
3300034272	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
RCM31_101883331	3300001851	Marine Plankton	LALGNYVDDTAAAAGGVAIGQIYRNGNFIVIRVS*
JGI25908J49247_100714412	3300003277	Freshwater Lake	NSYVVLTQVSQSLNYVDDVAAAAGGVPLGGIYRNGNFILIRLS*
JGI25909J50240_11058732	3300003393	Freshwater Lake	IVILSQVSSSLNFVNDTTAAAGGVPLGGLYRNGNAIQIRLV*
JGI25912J50252_101300092	3300003412	Freshwater Lake	NKVTHTNGYVVLSQVSASLNFVDDTAAASGGVPLGGLYRNGNFIVIRIV*
Ga0063232_100794343	3300004054	Freshwater Lake	YVVLSEVSQSLNFANDNAAASNGVPLGGLYRNGNFIQIRIS*
Ga0065166_101968111	3300004112	Freshwater Lake	IVVLSQVSSSLNFINDAAAALGGVPLGGLYRNGNVIQIRLV*
Ga0066180_104533921	3300004128	Freshwater Lake	TNVKVQSGYVILNQVSSSLNFVDDVAAATAGVPKGGLYRNGNFILIRIT*
Ga0007800_101431221	3300004776	Freshwater	NPVINSFVVLTQVSQSLNFTDDTTAAAGGVPLGGLYRNGSFVVIRIV*
Ga0049081_102004632	3300005581	Freshwater Lentic	KVTHTNGYVVLSQVSASLNFVDDTAAAAGGVPLGGLYRNGNFIVIRIV*
Ga0049080_102088762	3300005582	Freshwater Lentic	ILNQVSSSLNFVDDVAAATAGVPKGGLYRNGNFILIRIT*
Ga0078894_110646082	3300005662	Freshwater Lake	YVVLSHVSQSLNYANDNAAALNGVPLGGLYRNGNFIQIRIS*
Ga0079957_10847092	3300005805	Lake	QSSLLLLNVSSSLNFSDDAAAAAGGVPLGGIYRNGNFILIRLV*
Ga0102896_10031461	3300007618	Estuarine	TAINVVNGYVVLSEVSQSLNFANDNAAASNGVPLGGLYRNGNFIQIRIS*
Ga0102865_12421121	3300007639	Estuarine	NSYVVLTQVSASLNFVDDTAAAAGGVPLGGLYRNGNFILIRIS*
Ga0105051_103848931	3300007722	Freshwater	NQSKGNFVLTEVSESLNFANDINAANGGVPLGGLYRDGNTIKIRIN*
Ga0108970_110274392	3300008055	Estuary	VLTQVSASLDFVDDTAAAAGGVPLGGLYRNGNFILIRIS*
Ga0114340_102256215	3300008107	Freshwater, Plankton	QVSSSLNFSNDASASVGGVPLGGLYRNGNVIQIRLV*
Ga0114346_12177911	3300008113	Freshwater, Plankton	MVSSSLQFIDDAAAALGGVPLGGLYRNGNFILIRIT*
Ga0114350_11355683	3300008116	Freshwater, Plankton	TVTQYVTLPTVSASLNFVDDTAAAAAGVPLGGLYRNGSNIQIRLV*
Ga0114364_10296151	3300008267	Freshwater, Plankton	GAIVLSQVSASLNFADDTAAAAGGIPLGGLYRNGNFIAIRLT*
Ga0114364_11479262	3300008267	Freshwater, Plankton	NTFNGNQTISTGYVILSQVSSSLNYADDTAAAAGGVPLGGLYRNGNFILIRIT*
Ga0102811_10140711	3300009024	Estuarine	NGTAINVVNGYVVLSEVSQSLNFANDNAAASNGVPLGGLYRNGNFIQIRIS*
Ga0102860_10941772	3300009056	Estuarine	LASVSSSLNFADDTAAAAGGVPLGGLYRNGNFVMIRLT*
Ga0114973_104226411	3300009068	Freshwater Lake	QIVILTQVSSSLQFTDDTAAALGGVPLGGLYRNGNFILIRLT*
Ga0114959_102174293	3300009182	Freshwater Lake	MSGSFTQNGYAILTAVSQSLNYADDPAAAAGGVPLGGLYRNGNFILI
Ga0114976_104442971	3300009184	Freshwater Lake	VINNGFVVLTQVSQSLNFANDAAAAIGGVPLGGLYRNGNVIAIRIS*
Ga0115572_107794231	3300009507	Pelagic Marine	VTVENGHTILTQVSESLNSHDDFQASVLGVPLGGLYRNGNFIQIRIN*
Ga0115001_102104991	3300009785	Marine	QVSSSLNFTDDTAAASGGIPLGGLYRNGNFIVIRLT*
Ga0114964_104938572	3300010157	Freshwater Lake	LTTTQGFITLTQVSQSFNFADDASAAVGGVPLGGLYRNGNFIVIRLV*
Ga0114967_100351924	3300010160	Freshwater Lake	SQSLNYVDDVAAAAGGVPLGGIYRNGNFILIRLS*
Ga0133913_135942871	3300010885	Freshwater Lake	TGYITLSQVSQSLNFADDAAAAAGGVPLGGLYRNGNFILIRLS*
Ga0139557_10838492	3300011010	Freshwater	TTGYVILSQVSSSLNYADDTAAAAGGVPLGGLYRNGNFILIRIT*
Ga0151620_12691092	3300011268	Freshwater	IQSGYVVLSQVSSSLNFLDDTAAAAGGVPLGGLYRNGNFILIRIT*
Ga0153805_10384741	3300012013	Surface Ice	VSQSLNYVDDTAAAAGGVPLGGLYRNGNAIMIRLV*
Ga0129352_107648251	3300012528	Aqueous	GTSFTLENGHVVLAQVSQSLNYADDTAAAAGGVPLGGLYRSGNFIAIRLT*
Ga0163109_103825871	3300012936	Surface Seawater	GAVVLTKVSESLNFTNDTDAATGGVPLGGLYRNGNDIKIRIT*
Ga0164292_101746891	3300013005	Freshwater	SYLNPIVSSYVVLTQVSQSLNFADDTSAAAGGVPLGGLYRNGNFILIRIS*
(restricted) Ga0172370_105735462	3300013136	Freshwater	VSSYVVLTQVSQSLNYVDDTAASAGGVPLGGLYRNGNFIMIRLT*
Ga0177922_106814982	3300013372	Freshwater	IVSSYVVLTQVSQSLNFVDDDAAAAGGVPLGGLYRNGNFILIRIS*
Ga0181347_10611721	3300017722	Freshwater Lake	ILSQVSASLNYADDTAAAAGGVPLGGLYRNGNFILIRIS
Ga0181401_10995142	3300017727	Seawater	LAQVSESLEFDNDTLAAAGGVPLGGLYRSGNFIAIRLT
Ga0181356_10346453	3300017761	Freshwater Lake	LNPIQSSYVILSQVSASLNYADDTAAAAGGVPLGGLYRNGNFILIRIS
Ga0181356_10359673	3300017761	Freshwater Lake	LSQVSASLNYADDTAAAAGGVPLGGLYRNGNFILIRIS
Ga0181356_10472312	3300017761	Freshwater Lake	LTQVSASLNFVDDTAAAAGGIPLGGLYRNGNFILIRIS
Ga0181358_11882152	3300017774	Freshwater Lake	LTQVSQSLNFVDDAAAAAGGIPLGGLYRNGNFILIRIS
Ga0181357_10269123	3300017777	Freshwater Lake	YVILSQVSASLNYADDTAAAAGGVPLGGLYRNGNFILIRIS
Ga0181357_10404131	3300017777	Freshwater Lake	LNPIVSSYVVLTQVSQSLNFVDDTAAAAGGIPLGGLYRNGNFILIRIS
Ga0181357_10720373	3300017777	Freshwater Lake	ASYLNPIVSSYIILTQVSQSLDFPDDSAAAAGGVPLGGLYRNVNSILIRIS
Ga0181348_10813742	3300017784	Freshwater Lake	IVSSYVVLTQVSSSLNFVDDTAAAAGGIPLGGLYRNGNFILIRIS
Ga0181348_12185202	3300017784	Freshwater Lake	SYVILSQVSASLNYADDTAAAAGGVPLGGLYRNGNFILIRIS
Ga0181424_102519731	3300017786	Seawater	PLIQSTYNFIDDAAAATGGVPLGGLYRNGSDIKIRLT
Ga0181591_111359561	3300018424	Salt Marsh	TSVTIENGYTILTEISESGHYADDTAAALGGVPLGGVYRNGNILQIRTGS
Ga0188839_10336272	3300019122	Freshwater Lake	NAGFILTTQVSSTSYANDTAAAAGGVPVGGLYRNGNFVQIRLA
Ga0181359_10783112	3300019784	Freshwater Lake	VILTQVSASLNYADDTAAAAGGVPLGGLYRNGNFILIRIS
Ga0181359_11683262	3300019784	Freshwater Lake	KVSQSLNFANDNAAASNGVPLGGLYRNGNFIQIRIS
Ga0211732_11393832	3300020141	Freshwater	LNPIVSSYVVLTQVSQSLNFVDDAAAAAGGVPLGGLYRNGNFILIRIS
Ga0211736_109041372	3300020151	Freshwater	ILTQVSSSLQFTDDIAAAAGGVPLGGLYRNGNFILIRLT
Ga0194115_100954981	3300020183	Freshwater Lake	LTQVSQSLNFVDDAAASSSGVPLGGLYRNGNFIMIRIT
Ga0206131_100172831	3300020185	Seawater	NTFESKTDGNLVLANVYLNKNYEDDTAAAAGGVPLGGLYRSGNFIAIRIQ
Ga0194129_103439042	3300020578	Freshwater Lake	LTQVSQSLNFIDDAAASSSGVPLGGLYRNGNFIMIRIT
Ga0194123_102233522	3300021093	Freshwater Lake	VLTQVSQSLNFVDDAAASSSGVPLGGLYRNGNFIMIRIT
Ga0213859_103859881	3300021364	Seawater	IFSQVSSSLDFVDDTAAAAGGVPLGGIYRSGSLIRIRLV
Ga0206123_100424275	3300021365	Seawater	YIILTEVSESLNFVDDSAAQAGGVPLGGLYRNGSDIKIRIS
Ga0222713_101507821	3300021962	Estuarine Water	VTNGYVVLTQVSMSLNFVDDTAAAAGGVPLGGLYRNGNFILIRLT
Ga0222713_105270712	3300021962	Estuarine Water	LTQVSQSLNFVDDTAAAAGGVPLGGLYRNGNFISIRIA
Ga0222712_105851661	3300021963	Estuarine Water	GTVQSDVKIQSGYVVLSQVSSSLNFLDDTAAAAGGVPLGGLYRNGNFILIRIT
Ga0196899_10937781	3300022187	Aqueous	VENGHTILAQVSESLNYNNDTEAAAGGVPLGGLYRSGNFIAIRLT
Ga0181354_11636241	3300022190	Freshwater Lake	SYVVLTQVSQSLNYVDDVAAAAGGVPLGGIYRNGNFILIRLS
Ga0214923_103288302	3300023179	Freshwater	TNNNLTASYAILASVSMSLNFVDDTAAAAGGVPLGGLYRNGNFILIRLT
Ga0244775_113326332	3300024346	Estuarine	FTGSLSQNIGFVVLTQVSQSLNYADDNAAAAGGVPLGGLYRNGNFILIRLS
Ga0208920_10802021	3300025072	Marine	YVVLTQVSQSLNYTTDSLAGAGGVPYGGLYRSGSYIKIRMS
Ga0209602_11530142	3300025704	Pelagic Marine	VLTEVSESLDFANDGLAAAGGVPLGGLYRNGNVIQIRIV
Ga0255170_10531041	3300026459	Freshwater	IQNGYVILSQVSQSLNFSDDAAAALGGVPLGGLYRNGNFIAIRIS
Ga0255074_10032521	3300027121	Freshwater	SDVKIQSGYVVLSQVSSSLNFLDDTAAAAGGVPLGGLYRNGNFILIRLT
Ga0208442_10059461	3300027229	Estuarine	INVVNGYVVLSEVSQSLNFANDNAAASNGVPLGGLYRNGNFIQIRIS
Ga0255088_10784252	3300027597	Freshwater	TVSNGYIILTQVSASLNFVDDTAAAAGGVPLGGLYRNGNFILIRLT
Ga0208974_11885432	3300027608	Freshwater Lentic	ILNQVSSSLNFVDDVAAATAGVPKGGLYRNGNFILIRIT
Ga0208133_11514291	3300027631	Estuarine	NNGFVVLTQVSQSLNYADDNAAAAGGVPLGGLYRNGNFILIRLS
Ga0209442_10835243	3300027732	Freshwater Lake	VSASLNFVDDTAAASGGVPLGGLYRNGNFIVIRIV
Ga0209297_12389352	3300027733	Freshwater Lake	QTNVKVQGGYVILNQVSSSLNFVDDAAAATAGVPKGGLYRNGNFILIRIT
Ga0209596_10845271	3300027754	Freshwater Lake	ASYLNPITNSYVVLTQVSQSLNYVDDVAAAAGGVPLGGIYRNGNFILIRLS
Ga0209770_100369705	3300027769	Freshwater Lake	YVVLSHVSQSLNYANDNAAALNGVPLGGLYRNGNFIQIRIS
Ga0209358_105756541	3300027804	Freshwater Lake	GNVQSNVKVQSGYVVLSQVSSSLNFVDDNAAGLAGVPLGGLYRNGNFILIRIT
Ga0209400_12110691	3300027963	Freshwater Lake	PITNSYVVLTQVSQSLNYVDDVAAAAGGVPLGGIYRNGNFILIRLS
Ga0307376_107284132	3300031578	Soil	VTSNVDFIDGYVIMSKVSSSLDFVDDTAAAAGGVPLGGLYRNGNFIQIRIA
Ga0315907_107148661	3300031758	Freshwater	TLTQVSQSLNYADDAAAAAGGVPLGGLYRNGNFIAIRIV
Ga0316219_10742522	3300031759	Freshwater	LTGSFTQTGYHILTTVSQSLNFADDVAAAAGGVPLGGLYRNGNFILIRLS
Ga0315900_105032773	3300031787	Freshwater	ETTTILAHVSASLNYANDTAAAAGGVPLGGIYRNGNVIQIRLV
Ga0315909_101812351	3300031857	Freshwater	YLNPLNQIIILPTVSSSLNFTDDASAAAGGVPLGGLYRNGNFILIRMT
Ga0315904_113071752	3300031951	Freshwater	AAFTGSLSQNNGFVVLTQVSQSLNYADDNAAAAGGVPLGGLYRNGNFILIRLS
Ga0315294_107894772	3300031952	Sediment	QSGYVILNQVSSSLNFVDDVAAATAGVPKGGLYRNGNFILIRIT
Ga0315901_100315621	3300031963	Freshwater	LTQVSQSLNYADDAAAAVGGVPLGGLYRNGNFIAIRIV
Ga0315901_100492151	3300031963	Freshwater	IVVLSQVSSSLNFINDAAAALGGVPLGGLYRNGNVIQIRLV
Ga0315901_106326712	3300031963	Freshwater	AHVSASLNYANDTAAAAGGVPLGGIYRNGNVIQIRLV
Ga0315274_117970062	3300031999	Sediment	VILNQVSSSLNFVDDVAAATAGVPKGGLYRNGNFILIRIT
Ga0315902_100358348	3300032093	Freshwater	NGAQTVTTGYITLTQVSQSLNYADDAAAAAGGVPLGGLYRNGNFIAIRIV
Ga0315903_104113642	3300032116	Freshwater	TGYIVLTQVSQSLNYVDDTDAAANGVPLGGLYRNGNFIAIRIV
Ga0315903_108301461	3300032116	Freshwater	ILSQVSSSLNFSNDASASVGGVPLGGLYRNGNVIQIRLV
Ga0315903_112037423	3300032116	Freshwater	GYVVLTQVSRSLNYLNDTAAASGGVPLGGLYRSGSFILIRLV
Ga0334996_0107334_2_139	3300033994	Freshwater	TQNGYAILTAVSQSLNFANDAAAAAGGVPLGGLYRSGNFILIRLS
Ga0334987_0532194_11_130	3300034061	Freshwater	VLTQVSQSLNYADDTAAAAGGVPLGGLYRNGNFIAIRIV
Ga0335012_0368936_560_709	3300034093	Freshwater	GNQTVTTGYVILSQVSSSLNYADDTAAAAGGVPLGGLYRNGNFILIRIT
Ga0335031_0042764_14_133	3300034104	Freshwater	VLTQVSQSLNYADDAAAAAGGVPLGGLYRNGNFIAIRIV
Ga0335066_0643527_407_541	3300034112	Freshwater	LNQIVILTQVSSSLEFIDDVAAAAGGVPLGGLYRNGNFILIRLT
Ga0335033_0443202_3_149	3300034117	Freshwater	GRFTQNGFKILTAVSQSLNFANDAAAAAGGVPLGGLYRSGNFILIRLS
Ga0335049_0804849_2_160	3300034272	Freshwater	NVNNDVKIENGFSILTSVSQSLEFANDAAAAAGGVPLGGLYRSGNFILIRLV

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093279

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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