Metagenome / Metatranscriptome Family F093277

Overview

Basic Information

• Family ID: F093277
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 106
• Average Sequence Length: 40 residues
• Representative Sequence: MEHTFMMVLDHVGDQEAMVYAQLGQQPLVRTTETSPEPG
• Number of Associated Samples: 21
• Number of Associated Scaffolds: 106

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 0.00 %
• % of genes from short scaffolds (< 2000 bps): 0.00 %
• Associated GOLD sequencing projects: 18
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.19

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (100.000 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (94.340 % of family members)
• Environment Ontology (ENVO): Unclassified (84.906 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (98.113 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 34.33%
  β-sheet: 0.00%
  Coil/Unstructured: 65.67%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF04564	U-box	1.89
PF02518	HATPase_c	1.89
PF14225	MOR2-PAG1_C	1.89
PF05118	Asp_Arg_Hydrox	0.94
PF13578	Methyltransf_24	0.94
PF00069	Pkinase	0.94
PF00909	Ammonium_transp	0.94
PF01965	DJ-1_PfpI	0.94
PF00462	Glutaredoxin	0.94
PF07714	PK_Tyr_Ser-Thr	0.94
PF00970	FAD_binding_6	0.94
PF03366	YEATS	0.94
PF04142	Nuc_sug_transp	0.94
PF07690	MFS_1	0.94
PF12368	Rhodanese_C	0.94
PF13621	Cupin_8	0.94
PF00754	F5_F8_type_C	0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	7.55
COG0004	Ammonia channel protein AmtB	Inorganic ion transport and metabolism [P]	0.94
COG3555	Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily	Posttranslational modification, protein turnover, chaperones [O]	0.94

Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Category

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Type

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	94.34%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	2.83%
Coastal	Environmental → Aquatic → Marine → Coastal	0.94%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.94%
Pelagic	Environmental → Aquatic → Marine → Pelagic	0.94%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	94.34%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.89%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	0.94%

Habitat

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	94.34%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.89%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	0.94%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.94%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	0.94%
Polar Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine	0.94%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300002153	Marine eukaryotic phytoplankton communities from the Norwegian Sea - 20m ARK-7M Metagenome	Environmental
3300002154	Marine eukaryotic phytoplankton communities from the South Atlantic Ocean - 30m ANT-15 Metagenome	Environmental
3300002186	Marine eukaryotic phytoplankton communities from the Norwegian Sea - 10m ARK-5M Metagenome	Environmental
3300007636	Estuarine microbial communities from the Columbia River estuary - metaG 1371A-3	Environmental
3300009172	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154	Environmental
3300009420	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152	Environmental
3300009425	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136	Environmental
3300009432	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome	Environmental
3300009441	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome	Environmental
3300009526	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90	Environmental
3300009544	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome	Environmental
3300010883	western Arctic Ocean co-assembly	Environmental
3300012419	Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 24hr light incubation - RNA10.B_24.20151111 (Metagenome Metatranscriptome)	Environmental
3300020595	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1	Environmental
3300027195	Estuarine microbial communities from the Columbia River estuary - metaG 1370A-3 (SPAdes)	Environmental
3300027315	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_03_M0_10 (SPAdes)	Environmental
3300027810	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes)	Environmental
3300027849	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome (SPAdes)	Environmental
3300027883	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome (SPAdes)	Environmental
3300031252	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SW 0.2	Environmental
3300031621	Marine microbial communities from Western Arctic Ocean, Canada - AG5_Surface	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24540J26637_102121071	3300002153	Marine	HTFMMVLDHVGDQGAMVHAQLGQQPLVRTTATSLEPR*
JGI24538J26636_101506391	3300002154	Marine	HTFMMTLDHVGDQEAMVYAQLGQQPLARTTETPLEPG*
JGI24539J26755_100843851	3300002186	Marine	MEHTFMMVXDHVGDXEAIVYAQLGQQPLVRTTETSL*
JGI24539J26755_101918362	3300002186	Marine	MEHTFMMVLDHVGDQEAIMYAQLGQQPLVRTTETSP*
JGI24539J26755_101920341	3300002186	Marine	MEHTFMMVLDHVGDLEAMVYAQLGQQPLVRTTETSPEPG*
JGI24539J26755_102029211	3300002186	Marine	MGHTFMMVLDHVGDQGAMVHAQLGQQPLVRTAATSLEPR*
JGI24539J26755_102500851	3300002186	Marine	MMTLDHVGDLXAMVHAQLGQQPLAHTTETSLEPG*
Ga0102856_10385172	3300007636	Estuarine	MEHTFMMVLDHVGDQEAMVYAQLGQQPLARTTETPL*
Ga0114995_107660631	3300009172	Marine	MESTFMMVLDQVGDEEAMVYAQLGHSAVSSLARTTEKSL*
Ga0114994_107429301	3300009420	Marine	MEHTFMMVLDHVGDQEAMVHAQLGQQPLARTTATSLEPRLE
Ga0114997_106325272	3300009425	Marine	MENTFMMVLDHVGDQEAMVYAQLGQHPLARTTETSPEPR*
Ga0115005_100364134	3300009432	Marine	MMVLDPCLDHVGDQEAMVYAQLGQQPLVRTTETSPEPG*
Ga0115005_100762984	3300009432	Marine	MEHTFMMVLDHVGDQEAIVYAQLGQQPLVRTTET*
Ga0115005_101761241	3300009432	Marine	NTFMMTLDHVGDREAMVYAQLGQQPLARTTETPL*
Ga0115005_102492821	3300009432	Marine	TRGALTAASSMEHTFMMVLDHVGDQEAMVYAQRGQQPLARTTETSLEPR*
Ga0115005_103094491	3300009432	Marine	MEHTFMMTLDHVGDLEAMVYAQLGQQPLVRTTETSPEPG*
Ga0115005_104728982	3300009432	Marine	MEHTFMMVFDHVGDEEAIVYAQLGQQPLVRTTETSL*
Ga0115005_106349881	3300009432	Marine	MEHTFMMTPSLDYVGDEEAMEYAQLGQQPLVRTTETSL*
Ga0115005_106505421	3300009432	Marine	RGALTAASSMEHTFMMVLDHVGDQGATVYAQLGQQPLVRTTETSP*
Ga0115005_106641971	3300009432	Marine	TRGALTATSSMEHTFMMTLDHVGDQEAMVYAQLGQQPLVRTTETSL*
Ga0115005_107592571	3300009432	Marine	MEHTFMMTLDHVGDREAMVYAQLGQEPLVRTTETSLEPG*
Ga0115005_108517291	3300009432	Marine	LRAASSMENTFMMTLDHVGDREAMVYAQLGQQPLARTTETPF*
Ga0115005_112791141	3300009432	Marine	ALTAASSMEHTFMMVLDHVGDQEAIMYAQLGQQPLVRTTETSP*
Ga0115005_114320481	3300009432	Marine	MMTLDYVGDQEAIVYAQLGQQPLARTTETSLATEPGHSL
Ga0115007_100394881	3300009441	Marine	MEHTLMMVLDHVGDHEAIVYAQLGQQPLARTTETSLEP
Ga0115007_100696381	3300009441	Marine	SSMEHTFMMVLDHVGDQEAMVYAQLCQQPLVRTTETSPEPG*
Ga0115007_100834863	3300009441	Marine	GALTAASSMEHTFMMTLDYVGDREAMVYAQLGHQPLVRTTATSLEPR*
Ga0115007_100987091	3300009441	Marine	TAASSMEHTFMMVLDHVGDQEAIVYAQLGQQPLVRTTETSLEPR*
Ga0115007_101457692	3300009441	Marine	RGALTAASSMEHTFMMVLDHVGDQEAMVYAQLGQQPLARTTETSPELRLWGRSPL*
Ga0115007_104391081	3300009441	Marine	MKHTFMMVLDHVGDQEAMVYAQLGQQPLARTTETSL*
Ga0115007_104901041	3300009441	Marine	MENTFMMVLYHVGDQEAMVYAQLGQQPLARTTETSLEPSLR*
Ga0115007_105385101	3300009441	Marine	MDHTFMMVLDHVGDQEAIMYAQLGQQPLVRTTETSP*
Ga0115007_107050631	3300009441	Marine	MENTFMMTLDYVGDREAMVYAQLGQQPLARTTETSL*
Ga0115007_107110151	3300009441	Marine	EHTFMMTLDHVGDREAMVYAQLGQQPLVRTTETSPEPG*
Ga0115007_108702141	3300009441	Marine	MEHTFMMVLDHVGDQEAMVYLYAQRGQQPLARTTETSLEPR*
Ga0115007_109149651	3300009441	Marine	MMVFDHVGDQEAIVYAQLGQQPLVRITETSLEPR*
Ga0115007_109237021	3300009441	Marine	MMTLDYVGDQEAMVHAQLGQQPLARTTETSLQPRQGT
Ga0115007_110044421	3300009441	Marine	MEHTFMMTLDYIGDGEAMEYAQLGQQPLVRTTETSL*
Ga0115007_110077381	3300009441	Marine	MEHTFMMTLDYVGDQEAMVYAQLGQQPLARTTETSL*
Ga0115007_112604571	3300009441	Marine	SMEHTFMMVLDHVGDQEAMVYAQLGQQPLARTTETSL*
Ga0115004_102850641	3300009526	Marine	MEHTFMMVLDHVGDQEAMVYAQLGQQPLVRTTETSPEPG*
Ga0115006_100049456	3300009544	Marine	MGNTFMMTLDHVGDMEAMVYAQLGQQPLVRTTETSLEPR*
Ga0115006_100143751	3300009544	Marine	MMVIDHVGDQEAMVYAQLGQQPLVRTTETSPEPG*
Ga0115006_100573992	3300009544	Marine	MMVLDHVGDQEAMVHAQLGQQPLARTTETSLEPG*
Ga0115006_100749543	3300009544	Marine	MEHTLMMVLDHVGDHEAIVYAQLGQQPLARTTETSLEPG*
Ga0115006_100810201	3300009544	Marine	AASSIEHTFMMTLDHVGDQEAMVYAQLGQQPLAHITETSLQLNCNRDK*
Ga0115006_101506401	3300009544	Marine	GALRAASSMEHTFMMTLDHVGDQEAMVYAQLGQQPLVRTTETPL*
Ga0115006_101998563	3300009544	Marine	ASSMENTFMMTLDYVGDREAMVYAQLGQQPLARTTETSL*
Ga0115006_102526093	3300009544	Marine	ASSMEHTFMMVLDHVGDQEAMVYAQLGQQPLVRTTATSPEPG*
Ga0115006_104681511	3300009544	Marine	MVLYHVGDQEAMVYAQLGQQPLARTTETSLEPSLR*
Ga0115006_109131562	3300009544	Marine	GGHHTRGALTAASSMEHTFMMVLDHVGDQEAMVYAQLVQQPLARTTETSPEPR*
Ga0115006_109335651	3300009544	Marine	ALTAASSMEHTFMMTLDHVGDQEAMVYAQLGQQPLARTTETPLEPG*
Ga0115006_118940771	3300009544	Marine	GALTAASSMEQTFMMTLDHVDDQDATVYAQLGQQPLARTTVTSLQPG*
Ga0115006_118983291	3300009544	Marine	TFMMVLDHVGDQEAMVYAQLGQQPLVRTTETSPEPR*
Ga0115006_119641221	3300009544	Marine	MEHTFMMTLDHVGDQEAMVYAQLGHQPLVRTTETSPEPRPGTLSC
Ga0133547_104081511	3300010883	Marine	HTFMMVLDHVGDQEAMVYAQLGQQPLVRTTETSPEPG*
Ga0133547_113504123	3300010883	Marine	MEHTFMMVLDHVGDQEAMVYAQLGHQPLVRTTEASLEPG*
Ga0133547_114970561	3300010883	Marine	TAASSMEHTFMMVLDHVGDQEAIVYAQLGQQPLVRTTETSL*
Ga0133547_119423651	3300010883	Marine	MENTFMMTLDHVGDREAMVYAQLGQQPLARTTETPL*
Ga0138260_105965321	3300012419	Polar Marine	MENTLMMILDYVGDEEAMAYAQLGKHPLARTTESSP
Ga0206126_102708811	3300020595	Seawater	MMTLDHEVMVYAQLGQQPLARTTETSLQPRQGTLSCLSA
Ga0208676_10131921	3300027195	Estuarine	MEHTFMMVLDHVGDQEAMVYAQLGHQPLVRTTETSLEPG
Ga0208949_10619451	3300027315	Marine	MMTLDHVGDREAMVYAQLGQQPLARTTETPLELNLGTLSC
Ga0209302_1000146311	3300027810	Marine	MMVLDPCLDHVGDQEAMVYAQLGQQPLVRTTETSPEPG
Ga0209302_100014931	3300027810	Marine	TAASSMEHTFMMVLDHVGDQEAIVYAQLGQQPLVRTTETSL
Ga0209302_100016155	3300027810	Marine	MEHTFMMVLDHVGDQEAIVYAQLGQQPLVRTTETSLEPR
Ga0209302_100025688	3300027810	Marine	MEHTFMMVLDHVGDQEAIVYAQLGQQPLVRTTETSL
Ga0209302_100031795	3300027810	Marine	MEHTLMMVLDHVGDQEAMVYAQLGQQPLVRTTETSLESE
Ga0209302_100077184	3300027810	Marine	MVLDHVGDQEAMVYAQLGQQPLARTTETSLEPRDRGRSPV
Ga0209302_100112991	3300027810	Marine	MEHTFMMVLDHVGDQEAILYAQLGQQPLVRTTQTSP
Ga0209302_100122631	3300027810	Marine	MEHTFMMTLDHVGDREAMVYAQLGQQPLVRTTETSLEPG
Ga0209302_100123011	3300027810	Marine	GALRAASSMENTFMMTLDHVGDREAMVYAQLGQQPLARTTETSL
Ga0209302_100129505	3300027810	Marine	MEHTFMMVLDHVGDQEAMVYAQLGQQPLVRTTATSLEPR
Ga0209302_100133754	3300027810	Marine	MDHTFMMVLDHVGDQEAIMYAQLGQQPLVRTTETSP
Ga0209302_100134026	3300027810	Marine	MEHTFMMVLDHVGDQEAMVYAQLVQQPLARTTETSPEPR
Ga0209302_100134271	3300027810	Marine	MEHTFMMTLDYVGDREAMVYAQLGQQPVVRTTATSL
Ga0209302_100146123	3300027810	Marine	MDHTFMMVLDHVGDQEAMVYAQLGQQPLARTTETSL
Ga0209302_100149471	3300027810	Marine	GGHHTRGALTAASSMEHTFMMVLDHVGDQEAMVYAQLGQQPLARTTETSPEPG
Ga0209302_100159182	3300027810	Marine	MKHTFMMVLDHVGDQEAMVYAQLGQQPLARTTETSL
Ga0209302_100256131	3300027810	Marine	MMVLDHVGDQEAMVYLYAQRGQQPLARTTETSLEPR
Ga0209302_100293753	3300027810	Marine	MEHTFMMTLDHVGDREAMVYAQLGQQPLVRTTETSPEPG
Ga0209302_100454843	3300027810	Marine	MEHTFMMVFDHVGDEEAIVYAQLGQQPLVRTTETSL
Ga0209302_100521262	3300027810	Marine	MENTFMMTLDYVGDREAMVYAQLGQQPLARTTETSL
Ga0209302_100790432	3300027810	Marine	LTAASSMEHTFMMTLDYVGDGEAMEYAQLGQQPLVRTTETSL
Ga0209302_100910773	3300027810	Marine	LTAASSMEHTFMMVLDHVGDQEAMVYAQLGQQPLVRTTATSPEPG
Ga0209302_100923502	3300027810	Marine	ASSMEHTFMMVLDHVGDQEAMVYAQLGQQPLVRTTATSLEPR
Ga0209302_101706021	3300027810	Marine	ALTAARSMEHTFMMVFDHVGDEEAIVYAQLGQQPLVRTTETSL
Ga0209302_101831831	3300027810	Marine	MENTFMMVLYHVGDQEAMVYAQLGQQPLARTTETSLEPSLR
Ga0209302_102723992	3300027810	Marine	MEHTFMMVLDHVGDLEAMVYAQLGQQPLVRTTETSPEPG
Ga0209302_104178651	3300027810	Marine	MMTLDYVGDQEAMVHAQLGQQPLARTTETSLQPRQGTH
Ga0209302_104468981	3300027810	Marine	RGALTAASSMEHTFMMVLDHVGDQEAMVYAQLGHQPLVRTTEASLEPG
Ga0209302_104518841	3300027810	Marine	AASSMEHTFMMVLDHVGDQEAMVYAQLVQQPLARTTETSPEPR
Ga0209302_105006351	3300027810	Marine	MEHTFMMVLDHVGDLEAMVYAQLGQKPLVRTTETSPEPG
Ga0209712_100478011	3300027849	Marine	MEHTFMMTLDHVGDQEAMVYAQLGQQPLVRTTATSLEPR
Ga0209712_100826502	3300027849	Marine	MENTFMMTLDHVGDREAMVYAQLGQQPLARTTETPF
Ga0209712_103617401	3300027849	Marine	TRGALTATSSMEHTFMMTLDHVGDQEAMVYAQLGQQPLVRTTETSL
Ga0209712_104712041	3300027849	Marine	MEHTFMMTLDHVGDREAMVYAQLGQEPLVRTTETSLEPG
Ga0209713_100545451	3300027883	Marine	FMMVLDHVGDQEAMVYAQLGQQPLVRTTETSPEPR
Ga0209713_101731372	3300027883	Marine	MERTFMMTLDHVGDQEAMVYAQLGQQPLVRTTATSLEPR
Ga0209713_102981921	3300027883	Marine	MVLYHVGDQEAMVYAQLGQQPLARTTETSLEPSLR
Ga0209713_103316392	3300027883	Marine	MEHTFVMVLDHVGDQQEAIVYAQLGQQPLVRTTETSPEPG
Ga0209713_103984921	3300027883	Marine	SGGHHTRGALTAASSMEHTFMMVLDHVGDQEAMVYLYAQRGQQPLARTTETSLEPR
Ga0209713_106617121	3300027883	Marine	GGHHTRGALTAASSMEHTFMMVLDHVGDQEAMVYAQLVQQPLARTTETSPEPR
Ga0209713_107871011	3300027883	Marine	TAASSMEHTFMMTLDHVGDREAMVYAQLGQQPLVRTTETSPEPR
Ga0307494_10472221	3300031252	Sackhole Brine	GGHHTRGALTAASSMEHTLMMVLDHVGDHEAIVYAQLGQQPLARTTETSLEPG
Ga0302114_101884971	3300031621	Marine	MEHTFMMTPSLDYVGDEEAMEYAQLGQQPLVRTTETSL