Metagenome / Metatranscriptome Family F093174

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F093174
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	61 residues
Representative Sequence	MYQGNCGRCGRKVRTDENYLKAHLWASTAVFHWSCFVALMKEHGEAAAEDATWKASRVTR
Number of Associated Samples	65
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	88.68 %
% of genes near scaffold ends (potentially truncated)	19.81 %
% of genes from short scaffolds (< 2000 bps)	56.60 %
Associated GOLD sequencing projects	55
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (54.717 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (33.019 % of family members)
Environment Ontology (ENVO)	Unclassified (46.226 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.623 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.55% β-sheet: 22.73% Coil/Unstructured: 47.73%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00436	SSB	42.45
PF00589	Phage_integrase	7.55
PF13604	AAA_30	3.77
PF13538	UvrD_C_2	2.83
PF10502	Peptidase_S26	1.89
PF12167	Arm-DNA-bind_2	1.89
PF10038	DUF2274	1.89
PF12773	DZR	1.89
PF12728	HTH_17	1.89
PF03524	CagX	1.89
PF06114	Peptidase_M78	0.94
PF02515	CoA_transf_3	0.94
PF00881	Nitroreductase	0.94
PF05036	SPOR	0.94
PF01799	Fer2_2	0.94
PF13560	HTH_31	0.94
PF04909	Amidohydro_2	0.94
PF00296	Bac_luciferase	0.94
PF07746	LigA	0.94
PF08681	DUF1778	0.94
PF01381	HTH_3	0.94
PF14518	Haem_oxygenas_2	0.94
PF02371	Transposase_20	0.94
PF02608	Bmp	0.94
PF13191	AAA_16	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	42.45
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	42.45
COG3504	Type IV secretory pathway, VirB9 components	Intracellular trafficking, secretion, and vesicular transport [U]	1.89
COG1744	Lipoprotein Med, regulator of KinD/Spo0A, PBP1-ABC superfamily, includes NupN	Signal transduction mechanisms [T]	0.94
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.94
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.94
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.94
COG4453	Uncharacterized conserved protein, DUF1778 family	Function unknown [S]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.72 %
All Organisms	root	All Organisms	45.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.72 %
cellular organisms	root	All Organisms → cellular organisms	45.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.72 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	45.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.60 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.72 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.94 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.72 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.83 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.89 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %
Acidithiobacillia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia	0.94 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.94 %
Holophagae	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae	0.94 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.72 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.94 %
Holophagales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales	0.94 %
Acidithiobacillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales	0.94 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.94 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.72 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	1.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
Holophagaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → Holophagaceae	0.94 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.94 %
Acidithiobacillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae	0.94 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.94 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.72 %
Pseudoxanthomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas	1.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.94 %
Acidithiobacillus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus	0.94 %
unclassified Methylococcaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae	0.94 %
Geothrix	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → Holophagaceae → Geothrix	0.94 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.72 %
Pseudoxanthomonas helianthi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → Pseudoxanthomonas helianthi	1.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
Methylococcaceae bacterium TMED69	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	0.94 %
unclassified Geothrix	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → Holophagaceae → Geothrix → unclassified Geothrix	0.94 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.94 %
Acidithiobacillus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus	0.94 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.72 %
Pseudoxanthomonas helianthi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → Pseudoxanthomonas helianthi	1.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
Geothrix sp. SG178	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → Holophagaceae → Geothrix → unclassified Geothrix → Geothrix sp. SG178	0.94 %
Methylococcaceae bacterium TMED69	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	0.94 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.94 %
Acidithiobacillus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus	0.94 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004080\|Ga0062385_10168984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → Pseudoxanthomonas helianthi	1149	Open in IMG/M
3300004152\|Ga0062386_100080577	All Organisms → cellular organisms → Bacteria	2484	Open in IMG/M
3300005435\|Ga0070714_100249014	All Organisms → cellular organisms → Bacteria → Proteobacteria	1642	Open in IMG/M
3300005524\|Ga0070737_10000032	All Organisms → cellular organisms → Bacteria	356960	Open in IMG/M
3300005524\|Ga0070737_10000058	All Organisms → cellular organisms → Bacteria	269045	Open in IMG/M
3300005524\|Ga0070737_10044689	All Organisms → cellular organisms → Bacteria	2497	Open in IMG/M
3300005524\|Ga0070737_10085767	Not Available	1503	Open in IMG/M
3300005524\|Ga0070737_10237820	Not Available	738	Open in IMG/M
3300005529\|Ga0070741_10000271	All Organisms → cellular organisms → Bacteria	196620	Open in IMG/M
3300005541\|Ga0070733_10000205	All Organisms → cellular organisms → Bacteria	53312	Open in IMG/M
3300005591\|Ga0070761_10280767	Not Available	999	Open in IMG/M
3300005607\|Ga0070740_10003339	All Organisms → cellular organisms → Bacteria	17174	Open in IMG/M
3300005764\|Ga0066903_102730085	Not Available	958	Open in IMG/M
3300005861\|Ga0080006_1154086	All Organisms → cellular organisms → Bacteria	128719	Open in IMG/M
3300005921\|Ga0070766_10551672	Not Available	770	Open in IMG/M
3300009038\|Ga0099829_10007327	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6898	Open in IMG/M
3300009038\|Ga0099829_10024265	All Organisms → cellular organisms → Bacteria	4224	Open in IMG/M
3300009038\|Ga0099829_10162132	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1791	Open in IMG/M
3300009038\|Ga0099829_10447042	Not Available	1071	Open in IMG/M
3300009038\|Ga0099829_11754704	Not Available	509	Open in IMG/M
3300009088\|Ga0099830_10022534	All Organisms → cellular organisms → Bacteria	4127	Open in IMG/M
3300009088\|Ga0099830_10076576	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → Holophagaceae → Geothrix → unclassified Geothrix → Geothrix sp. SG178	2441	Open in IMG/M
3300009088\|Ga0099830_11042629	Not Available	678	Open in IMG/M
3300009089\|Ga0099828_10141371	All Organisms → cellular organisms → Bacteria	2120	Open in IMG/M
3300009089\|Ga0099828_11400763	Not Available	617	Open in IMG/M
3300009090\|Ga0099827_10077291	Not Available	2588	Open in IMG/M
3300009090\|Ga0099827_10314328	Not Available	1327	Open in IMG/M
3300009839\|Ga0116223_10269842	Not Available	1022	Open in IMG/M
3300010048\|Ga0126373_10005166	All Organisms → cellular organisms → Bacteria	10109	Open in IMG/M
3300010361\|Ga0126378_12300296	Not Available	615	Open in IMG/M
3300010376\|Ga0126381_102913263	Not Available	681	Open in IMG/M
3300010379\|Ga0136449_100008682	All Organisms → cellular organisms → Bacteria	28665	Open in IMG/M
3300010379\|Ga0136449_100026468	All Organisms → cellular organisms → Bacteria	14323	Open in IMG/M
3300010398\|Ga0126383_12907601	Not Available	559	Open in IMG/M
3300011270\|Ga0137391_10130421	Not Available	2185	Open in IMG/M
3300011270\|Ga0137391_10847430	Not Available	751	Open in IMG/M
3300011271\|Ga0137393_10079859	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2629	Open in IMG/M
3300011271\|Ga0137393_10117556	All Organisms → cellular organisms → Bacteria	2189	Open in IMG/M
3300012096\|Ga0137389_10014411	All Organisms → cellular organisms → Bacteria	5384	Open in IMG/M
3300012096\|Ga0137389_10285639	Not Available	1394	Open in IMG/M
3300012096\|Ga0137389_11152587	Not Available	664	Open in IMG/M
3300012189\|Ga0137388_10054510	Not Available	3261	Open in IMG/M
3300012189\|Ga0137388_10129084	Not Available	2212	Open in IMG/M
3300012189\|Ga0137388_10207582	All Organisms → cellular organisms → Bacteria	1768	Open in IMG/M
3300012189\|Ga0137388_10389381	Not Available	1289	Open in IMG/M
3300012361\|Ga0137360_10056833	Not Available	2843	Open in IMG/M
3300012362\|Ga0137361_10230922	Not Available	1681	Open in IMG/M
3300012363\|Ga0137390_10257474	All Organisms → cellular organisms → Bacteria → Proteobacteria	1730	Open in IMG/M
3300012363\|Ga0137390_10421692	All Organisms → cellular organisms → Bacteria → Proteobacteria	1312	Open in IMG/M
3300012982\|Ga0168317_1020331	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1950	Open in IMG/M
3300012982\|Ga0168317_1127398	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300016357\|Ga0182032_10536630	Not Available	966	Open in IMG/M
3300016422\|Ga0182039_10608990	Not Available	955	Open in IMG/M
3300017970\|Ga0187783_10417342	Not Available	975	Open in IMG/M
3300020080\|Ga0206350_11028730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	2180	Open in IMG/M
3300021401\|Ga0210393_10900564	Not Available	718	Open in IMG/M
3300021560\|Ga0126371_13689527	Not Available	516	Open in IMG/M
3300025503\|Ga0209012_1002917	All Organisms → cellular organisms → Bacteria	13797	Open in IMG/M
3300025929\|Ga0207664_10788669	Not Available	855	Open in IMG/M
3300026551\|Ga0209648_10229903	Not Available	1390	Open in IMG/M
3300026551\|Ga0209648_10273187	Not Available	1233	Open in IMG/M
3300026551\|Ga0209648_10324489	Not Available	1082	Open in IMG/M
3300027706\|Ga0209581_1001913	Not Available	22058	Open in IMG/M
3300027706\|Ga0209581_1088422	Not Available	1084	Open in IMG/M
3300027824\|Ga0209040_10018364	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4620	Open in IMG/M
3300027846\|Ga0209180_10013739	All Organisms → cellular organisms → Bacteria	4222	Open in IMG/M
3300027846\|Ga0209180_10682865	Not Available	560	Open in IMG/M
3300027862\|Ga0209701_10648491	Not Available	552	Open in IMG/M
3300027867\|Ga0209167_10000196	All Organisms → cellular organisms → Bacteria	57197	Open in IMG/M
3300027875\|Ga0209283_10065267	All Organisms → cellular organisms → Bacteria	2338	Open in IMG/M
3300027875\|Ga0209283_10103520	Not Available	1864	Open in IMG/M
3300027875\|Ga0209283_10604360	Not Available	695	Open in IMG/M
3300027882\|Ga0209590_10069515	Not Available	2023	Open in IMG/M
3300027905\|Ga0209415_10096312	All Organisms → cellular organisms → Bacteria → Acidobacteria	3281	Open in IMG/M
3300027908\|Ga0209006_10556075	Not Available	952	Open in IMG/M
3300027968\|Ga0209061_1000030	All Organisms → cellular organisms → Bacteria	510581	Open in IMG/M
3300027968\|Ga0209061_1005695	All Organisms → cellular organisms → Bacteria	10665	Open in IMG/M
3300028536\|Ga0137415_10734689	Not Available	799	Open in IMG/M
3300029943\|Ga0311340_10691151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → Pseudoxanthomonas helianthi	876	Open in IMG/M
3300031236\|Ga0302324_102480959	Not Available	634	Open in IMG/M
3300031670\|Ga0307374_10019209	All Organisms → cellular organisms → Bacteria	8795	Open in IMG/M
3300031670\|Ga0307374_10021148	Not Available	8208	Open in IMG/M
3300031670\|Ga0307374_10029583	Not Available	6421	Open in IMG/M
3300031671\|Ga0307372_10082762	All Organisms → cellular organisms → Bacteria	2708	Open in IMG/M
3300031671\|Ga0307372_10417729	Not Available	677	Open in IMG/M
3300031672\|Ga0307373_10151380	Not Available	1802	Open in IMG/M
3300031672\|Ga0307373_10162029	Not Available	1705	Open in IMG/M
3300031754\|Ga0307475_11200810	Not Available	591	Open in IMG/M
3300031954\|Ga0306926_11634035	Not Available	738	Open in IMG/M
3300031954\|Ga0306926_12680670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus	542	Open in IMG/M
3300032160\|Ga0311301_10048774	All Organisms → cellular organisms → Bacteria	9783	Open in IMG/M
3300032205\|Ga0307472_101020558	Not Available	777	Open in IMG/M
3300032261\|Ga0306920_102151087	Not Available	777	Open in IMG/M
3300032770\|Ga0335085_10004731	Not Available	22322	Open in IMG/M
3300032829\|Ga0335070_10339951	Not Available	1446	Open in IMG/M
3300032895\|Ga0335074_10004537	All Organisms → cellular organisms → Bacteria	19136	Open in IMG/M
3300032895\|Ga0335074_10310064	All Organisms → cellular organisms → Bacteria	1794	Open in IMG/M
3300032895\|Ga0335074_10688725	Not Available	989	Open in IMG/M
3300032896\|Ga0335075_10003334	All Organisms → cellular organisms → Bacteria	25510	Open in IMG/M
3300032896\|Ga0335075_10031497	All Organisms → cellular organisms → Bacteria	7655	Open in IMG/M
3300032896\|Ga0335075_10632702	Not Available	1048	Open in IMG/M
3300032896\|Ga0335075_10738122	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300032955\|Ga0335076_10879852	Not Available	777	Open in IMG/M
3300033134\|Ga0335073_10010415	All Organisms → cellular organisms → Bacteria	13068	Open in IMG/M
3300033134\|Ga0335073_10058488	All Organisms → cellular organisms → Bacteria	5119	Open in IMG/M
3300033134\|Ga0335073_10710362	Not Available	1097	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.28%
Aquatic	Environmental → Aquatic	4.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.51%
Freshwater	Environmental → Aquatic → Freshwater	2.83%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.89%
Peat	Environmental → Terrestrial → Peat	1.89%
Geologic	Environmental → Terrestrial → Geologic	1.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.04%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.21%
Clay	Environmental → Terrestrial → Soil → Clay	6.60%
Loam	Environmental → Terrestrial → Soil → Loam	5.66%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.83%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.89%
Mine	Environmental → Terrestrial → Geologic → Mine	1.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	55.66%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	13.21%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.55%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	6.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.77%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.83%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.89%
Unclassified	Environmental → Terrestrial → Geologic → Mine → Unclassified	1.89%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	33.02%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	12.26%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	12.26%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	6.60%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.72%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.72%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.83%
Hypersaline Mat	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat	1.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.89%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.89%
Weathered Mine Tailings	Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings	1.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.94%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005524	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005607	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005861	Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012982	Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCWfield	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025503	Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027706	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027968	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031671	Soil microbial communities from Risofladan, Vaasa, Finland - OX-1	Environmental	Open in IMG/M
3300031672	Soil microbial communities from Risofladan, Vaasa, Finland - OX-2	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062385_101689841	3300004080	Bog Forest Soil	MEQGECARCGRKVRSEENYLKAHLWAAAAVFHWPCLIALMKERGEMAVEDATCKTTRVTRV*
Ga0062386_1000805772	3300004152	Bog Forest Soil	MYQGNCARCEQKVRTDENYLKAHLWASTAVFHWSCFVALMKDRGETAAEDAAWKASRVTRG*
Ga0070714_1002490143	3300005435	Agricultural Soil	MLQEECACCGRKVRSDENFLKAHLWASTAWFHWECFIALMRDQGSPAAEDTVWKASRTKRTP*
Ga0070737_100000326	3300005524	Surface Soil	MLYQGYCARCGRRVRTEENWFKGKIWASTAVFHWACLIALMKEHGEAAAEDAAWKASRVTREQ*
Ga0070737_100000587	3300005524	Surface Soil	MLYQGDCGRCGRKVRTDENYLKAHLWASTAVFHWSCFTTLMKEHGEQAAEDAAWKASRVTREQ*
Ga0070737_100446895	3300005524	Surface Soil	MLYQGDCARCGRKVRTDENWFKGHVWASTAVFHWACLIVLMKEHGEQAAEDAAWKASRVTRSE*
Ga0070737_100857673	3300005524	Surface Soil	MLYQGDCARCGRKVRTDENWFKGHVWASTAVFHWACLIALMKEHGEQAAEDAAWKASRIMRSE*
Ga0070737_102378202	3300005524	Surface Soil	MLYQGDCARCGRKVRTDENYLKAHLWASTAVFHWSCFTTLMKEHGEQAAEDAAWKASRVTREQ*
Ga0070741_10000271190	3300005529	Surface Soil	MLYQGDCGRCGRKVRTDENYLKAHLWASTAVFHWSCFTTLMKEHGEQAAEDAAWKASRVTRGE*
Ga0070733_1000020538	3300005541	Surface Soil	MYQGNCGRCGQKVRTDENYLKAHLWASTAVFHWSCFVALMKEHGEATAEDATWKASRVTRER*
Ga0070761_102807672	3300005591	Soil	MYQGNCVCCGRKVRTDGNWLKAHLWGSTAVFDWTCFLGLMKEHGEEAAEEAAWKASKITRKQ*
Ga0070740_1000333915	3300005607	Surface Soil	MYQGNCGRCGQKVRTDENYLKAHLWASTAVFHWACFTKLMKEHGEAAAEEATWNASRVSREQ*
Ga0066903_1027300853	3300005764	Tropical Forest Soil	MLYQGSCGGCGQKVRTDENYLKAHLWASTAVFHWSCFAALMKQHGEEAAEDATWKASRVREVE*
Ga0080006_115408650	3300005861	Hypersaline Mat	MLYQGNCARCGRKVRTDENWFKGHIWASTAIFHWACLIALMKEQGEAAAEDAAWKASRVTREQ*
Ga0070766_105516722	3300005921	Soil	MTNIYQGSCARCERRVRKDEDHLKAHLWAGTAVFHWSCFIALMKDYGKEPAED
Ga0099829_100073278	3300009038	Vadose Zone Soil	MYQGDCARCGRKVRTDENYLEAHLWASTAVFHWSCFVALMKEHGETAAEDAAWKASRVTRS*
Ga0099829_100242652	3300009038	Vadose Zone Soil	MYQGNCGRCGRKVRTDENYLKAHLWASTAVFHWDCFEALMKEHGEAAAEDATWKASRITRG*
Ga0099829_101621323	3300009038	Vadose Zone Soil	MYQGNCGSCGRKVRTDENYLKAHLWASTAVFHWACFVTLMKERGEAAAEDATWKASTVTRD*
Ga0099829_104470421	3300009038	Vadose Zone Soil	MYQGNCGRCGRKVRTDENYLKAHLWASTAVFHWSCFVALMKEHGEAAAEDATWKASRVTRS*
Ga0099829_117547041	3300009038	Vadose Zone Soil	MYQGNCARCGRKVRSDENWLKGHLWASTAVFHWSCFIALMKEQGAPAAEDATWKASRVTRAE*
Ga0099830_100225342	3300009088	Vadose Zone Soil	MYQGDCARCGRKVRTDENYLKAHLWASTAVFHWSCFVALMKEHGETAAEDAAWKASRVTRS*
Ga0099830_100765764	3300009088	Vadose Zone Soil	MYQGNCGRCGRKVRTDENYLKAHLWASTAVFHWACFVTLMKERGEAAAEDATWKASTVTRD*
Ga0099830_110426292	3300009088	Vadose Zone Soil	MYQGKCGRCGGKVRTDENYLKAHLWASTAVFHWSCFVALMKEHGEAAAEDATWKASRVTQS*
Ga0099828_101413715	3300009089	Vadose Zone Soil	VRTDENYLEAHLWASTAVFHWSCFVALMKEHGETAAEDAAWKASRVTRS*
Ga0099828_114007632	3300009089	Vadose Zone Soil	VKAMYQGNCARCGRKVRSDENWLKGHLWASTAVFHWSCFIALMKEQGAPAAEEVTWKASRVTRAE*
Ga0099827_100772914	3300009090	Vadose Zone Soil	MYQGNCGRCGRKVRTDENYLKAHLWATTAVFHWDCFVALMKEHGEAAAEDATWKANRITRG*
Ga0099827_103143283	3300009090	Vadose Zone Soil	MYQGNCGSCGRKVRTDENYLKAHLWASTAVFHWACFVTLMKQRGEAAGEDATWKASTVTRD*
Ga0116223_102698423	3300009839	Peatlands Soil	AASAEAGARRSDAMYQGDCGRCGRKVRSDQNYLKAHLWASTAVFHWACFIALMKEQGETAAEDATWKANRVSRS*
Ga0126373_1000516617	3300010048	Tropical Forest Soil	MSTMIYQGNCARCERKVRTDENYLKAHLWASTAFFHWSCFIDLMKDQGAAAAEDAAWNATKTERV*
Ga0126378_123002961	3300010361	Tropical Forest Soil	MEGVNVMYLGECAHCGRKVRTDENYLRAHLSASTAVFHWNCFIALMKQHGEAAAEDATWKTNRVLREQ*
Ga0126381_1029132632	3300010376	Tropical Forest Soil	MYHGNCGGCGQKVRSDENWLRAHLWASTAVFHWRCLVALMKEQGEAGAEEATWKASRVSRGQ*
Ga0136449_1000086825	3300010379	Peatlands Soil	MYQGECARCGRKVRSDENYLKAHLWASTAVFHWACFIALMKEQGETAAEDATWKANRVSRS*
Ga0136449_10002646814	3300010379	Peatlands Soil	MYQGDCGRCGRKVRSDQNYLKAHLWASTAVFHWACFIALMKEQGETAAEDATWKASRVSRS*
Ga0126383_129076011	3300010398	Tropical Forest Soil	MQGVKDMNQGNCGRCGQKVRTDENYLRAHLWASTAVFHWNCLVALMKEHGEAALEDAAWKASRVRE
Ga0137391_101304213	3300011270	Vadose Zone Soil	MYQGKCGRCGGKVRTDENYLKAHLWASTAVFHWSCFVALMKEHGEAAAEDSTWKASRVTQS*
Ga0137391_108474301	3300011270	Vadose Zone Soil	MYQGNCGRCGQKVKTDENYLKAHLWASTAVFHWCCFVALMKEHGETAAEDATWKASRITRSE*
Ga0137393_100798592	3300011271	Vadose Zone Soil	MYQGKCGSCGGKVRTDENYLKAHLWASTAVFHWSCFVALMKEHGEAAAEDATWKASRVTQS*
Ga0137393_101175564	3300011271	Vadose Zone Soil	GRKVRTDENYLKAHLWASTAVFHWDCFEALMKEHGEAAAEDATWKASRITRG*
Ga0137389_100144118	3300012096	Vadose Zone Soil	MYQGNCGRCGRKVRTDENYLKAHLWASTAVFHWACFVALMKEHGEAAAEDATWKASRITRG*
Ga0137389_102856391	3300012096	Vadose Zone Soil	MYQGKCGRCGGKVRTDKNYLKAHLWASTAVFHWSCFVALMKEHGEAAAEDATWKASRVTQS*
Ga0137389_111525872	3300012096	Vadose Zone Soil	MYQGNCGRCGRKVRTDENYLKAHLWASTAVFHWSCFVALMKEHGEAAAEDATWKARRVTRS*
Ga0137388_100545102	3300012189	Vadose Zone Soil	MYQGNCGRCGRKVRTDENYLKAHLWASTAVFHWDCFEALMKEHGEAAAEDATWKASTVTRD*
Ga0137388_101290844	3300012189	Vadose Zone Soil	GRKVRTDENYLKAHLWASTAVFHWDWFVALMKEHGEAAAEDATWKANRITRG*
Ga0137388_102075821	3300012189	Vadose Zone Soil	MYQGNGARCGRKVRSDENYLKAHLWASTTVFHWACFIVLMKEQGETAAEDATWKASRVTRSR*
Ga0137388_103893812	3300012189	Vadose Zone Soil	VRTDENYLEAHLWASTAVFHWSCFVALMKEHGETAAEDAAWTASRVTRS*
Ga0137360_100568332	3300012361	Vadose Zone Soil	MYQGNCGRCGRKVRTDENYLKAHLWASTAVFHWDCFVALMKEHGEAAAEDATWKASRITRG*
Ga0137361_102309224	3300012362	Vadose Zone Soil	MYQGNCGRCGRKVRTDENYLKAHLWPSTAVFHWDCFVALMKEHGEAAAEDATWKASRITRG*
Ga0137390_102574741	3300012363	Vadose Zone Soil	CGRKVRTDENYLKAHLWASTAVFHWACFVTLMKERGEAAAEDATWKASTVTRD*
Ga0137390_104216922	3300012363	Vadose Zone Soil	MYQGNCARCGRKVRSDENYLKAHLWASTTVFHWACFIVLMKEQGETAAEDATWKASRVTRSR*
Ga0168317_10203314	3300012982	Weathered Mine Tailings	MLYQGDCGRCGQKVRTDGNWLKAHLWASTAVFHWRCLVTLMKEQGEAGAEDATWKASRVTRSE*
Ga0168317_11273982	3300012982	Weathered Mine Tailings	MLYQGDCGRCGRKVRTDENYLKAHLWASTAVFHWSCFTTLMKEHGEAAAEDAAWKASRVTREQ*
Ga0182032_105366302	3300016357	Soil	MYQGNCARCGQKVRPDENWLKAHLWASSAVFHWRCLLALMKEHGEAGAEDATWRASRVSRQQ
Ga0182039_106089903	3300016422	Soil	GQKVRTDENYLTAHLWASTAVFHWVCFTMLMKEHGEAAAEDTTWKAGRLSRQQ
Ga0187783_104173422	3300017970	Tropical Peatland	MYQGNRACCGRKVRTDGNWLKARFWGSTAVFDWSCFTKLMKEHGEAAAEDAAWKANKVTQNQ
Ga0206350_110287304	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	MLQEECACCGRKVRSDENFLKAHLWASTAWFHWECFIALMKDQGSPAVEDTVWKASRTKQTS
Ga0210393_109005641	3300021401	Soil	MTTIYQGSCARCERRVRTDEDHLKAHLWAGTAVFHWSCFIALMKDHGKESPKNAT
Ga0126371_136895272	3300021560	Tropical Forest Soil	MYQGNCGRCGQKVRTDENWLKAHLWASSAVFHWRCLVALMKEHGEAGAEDATWRASRVSRQQ
Ga0209012_10029175	3300025503	Hypersaline Mat	MLYQGNCARCGRKVRTDENWFKGHIWASTAIFHWACLIALMKEQGEAAAEDAAWKASRVTREQ
Ga0207664_107886693	3300025929	Agricultural Soil	LQEECACCGRKVRSDENFLKAHLWASTAWFHWECFIALMRDQGSPAAEDTVWKASRTKRT
Ga0209648_102299033	3300026551	Grasslands Soil	MYQGNCGRCGRKVRTDENYLKAHLWASTAVFHWACFVALMKEHGEAAAEDATWKASRITR
Ga0209648_102731873	3300026551	Grasslands Soil	MYQGNCARCGRKVRSDENWLKGHLWASTAVFHWSCFIALMKEQGAPAAEDATWKASRVTRAE
Ga0209648_103244891	3300026551	Grasslands Soil	MYQGDCARCGRKVRTDENYLKAHLWASTAVHWSCFVALMKEHGETAAEDAAWKASRVTRG
Ga0209581_100191326	3300027706	Surface Soil	MYQGNCGRCGQKVRTDENYLKAHLWASTAVFHWACFTKLMKEHGEAAAEEATWNASRVSREQ
Ga0209581_10884222	3300027706	Surface Soil	MLYQGNCGRCGRKVRTDENYLKAHLWASTAVFHWSCFTTLMKEQDEAAAEDAAWKASRVNQEE
Ga0209040_100183643	3300027824	Bog Forest Soil	MYQGNCARCEQKVRTDENYLKAHLWASTAVFHWSCFVALMKDRGETAAEDAAWKASRVTR
Ga0209180_100137394	3300027846	Vadose Zone Soil	MYQGNCGRCGRKVRTDENYLKAHLWASTAVFHWACFVTLMKERGEAAAEDATWKASTVTR
Ga0209180_106828652	3300027846	Vadose Zone Soil	MYQGNCGRCGRKVRTDENYLKAHLWASTAVFHWDCFVALMKEHGEAAAEDATWKAN
Ga0209701_106484912	3300027862	Vadose Zone Soil	MYQGKCGRCGGKVRTDENYLKAHLWASTAVFHWSCFVALMKEHGEAAAEDATWKASRVTQ
Ga0209167_1000019627	3300027867	Surface Soil	MYQGNCGRCGQKVRTDENYLKAHLWASTAVFHWSCFVALMKEHGEATAEDATWKASRVTRER
Ga0209283_100652672	3300027875	Vadose Zone Soil	MYQGNGARCGRKVRSDENYLKAHLWVSTAVFHWACFVILMREQGETAAEHVAWKASRLTRSR
Ga0209283_101035203	3300027875	Vadose Zone Soil	MYQGNCGRCGRKVRTDENYLKAHLWASTAVFHWSCFVALMKEHGEAAAEDATWKASRVTR
Ga0209283_106043602	3300027875	Vadose Zone Soil	MYQGNCGRCGRKVRTDENYLKAHLWASTAVFHWDCFEALMKEHGEAAAEDATWKANRITR
Ga0209590_100695153	3300027882	Vadose Zone Soil	MYQGNCGSCGRKVRTDENYLKAHLWASTAVFHWACFVTLMKQRGEAAGEDATWKASTVTR
Ga0209415_100963124	3300027905	Peatlands Soil	MYQGDCGRCGRKVRSDQNYLKAHLWASTAVFHWACFIALMKEQGETAAEDATWKASRVSR
Ga0209006_105560752	3300027908	Forest Soil	MMTNIYQGSCARCERRVRKDEDHLKAHLWAGTAVFHWSCFIALMKDYGKEPAEDAAGKASRDIRG
Ga0209061_1000030327	3300027968	Surface Soil	MLYQGYCARCGRRVRTEENWFKGKIWASTAVFHWACLIALMKEHGEAAAEDAAWKASRVTREQ
Ga0209061_10056951	3300027968	Surface Soil	MLYQGDCARCGRKVRTDENYLKAHLWASTAVFHWSCFTTLMKEHGEQAAEDAAWKASRV
Ga0137415_107346892	3300028536	Vadose Zone Soil	MYQGNCERCGRKVRTDENYLKAHLWASTAVFHWDCFEALMKEHGEAAAEDATWKASRITR
Ga0311340_106911513	3300029943	Palsa	MEQGECARCGRKVRSEENYLKAHLWAASAVFHWPCLIALMKERGEMAVEDAICKTRRVTR
Ga0302324_1024809591	3300031236	Palsa	MEQGECARCGRKVRNEENYLKAHMWAASAVFHWPCLIALMKERGEMAVEDAR
Ga0307374_100192094	3300031670	Soil	MYQGDCARCGQKVRSDENYLKAHLWASTAVFHWSCFVVLMKEHGETAAEDATWKASRVTR
Ga0307374_100211483	3300031670	Soil	MYQGDCARCGRKVRSDENYLKAHLWASTAVFHWSCFVALMKEHGETAAEDATWKASRVTR
Ga0307374_100295839	3300031670	Soil	MYQGDCARCGRKVRSDENYLKAHLWASTAVFHWSCFVVLMKEHGETAAEDATWKASRVTR
Ga0307372_100827621	3300031671	Soil	CARCGRKVRSDENYLKAHLWASTAVFHWSCFVVLMKEHGETAAEDATWKASRVTRS
Ga0307372_104177292	3300031671	Soil	MYQGDCARCGRKVRSDENYLKAHLWASTAVFHWSCFVVLMKEHGETAAEDATWKA
Ga0307373_101513802	3300031672	Soil	MYQGDCARCGRKVRSDENYLKAHLWASTAVFHWSCFVVLMKEHGETAAEDATWKASRVSR
Ga0307373_101620293	3300031672	Soil	MYQGVCARCGRKVRSDENYLKAHLWASTAVFHWSCFVVLMKEHGETAAEDATWKASRVTR
Ga0307475_112008102	3300031754	Hardwood Forest Soil	MYQGNCARCGRKVRSDENWLKGHLWASTAVFHWSCFIALMKEQGAPKAEDATWKASRVTRSE
Ga0306926_116340352	3300031954	Soil	MYQGNCGRCGQKVRTDENWLKAHLWASSAVFHWRCLVALMKEHGEAGAEDATWRASRVSR
Ga0306926_126806702	3300031954	Soil	MYQGNCGRCGQKVRTDENYLTAHLWASTAVFHWVCFTMLMKEHGEAAAEDTTWKAGRLSRQQ
Ga0311301_100487748	3300032160	Peatlands Soil	MYQGECARCGRKVRSDENYLKAHLWASTAVFHWACFIALMKEQGETAAEDATWKANRVSR
Ga0307472_1010205581	3300032205	Hardwood Forest Soil	MYQGNCGSCGRKVRTDENYLKAHLWASTAVFHWACLVTLMKGRGEAAAEDATWKASTVTR
Ga0306920_1021510872	3300032261	Soil	MYQGNCARCGQKVRPDENWLKAHLWASSAVFHWRCLLALMKEHGEAGAEEATWKASRVSRGQ
Ga0335085_1000473123	3300032770	Soil	MYQGNCGRCGQKVRTDENYLKAHLWAGTAVFHWACFTRLMKEHGEAAAEDATWNASRVSREQ
Ga0335070_103399511	3300032829	Soil	MSTMYQGNCACCERKVRTDGNHLKVHLWASTAVFHWNCFLVLMKEHGEKAAEEATWKASRID
Ga0335074_1000453712	3300032895	Soil	MYQGNCACCGRKVRTDGNWLKARLWSSTAVFDWSCLTKLMKEHGEAAAEDAAWKANKVTQKQ
Ga0335074_103100642	3300032895	Soil	MYQGSCGRCGRKVRTDENYLKAHLWASTAVFHWLCFVALMKEHGEAAAEEAAWKASRSAR
Ga0335074_106887252	3300032895	Soil	MYQGNCVCCGRKVRTDGNWLKAHLWGSTAVFDWSCFTTLMKEHGEAVAENAAWKASNVAQKQ
Ga0335075_1000333423	3300032896	Soil	MMYQGNCVCCGRKVRTDGNWLKVHLRGSTALFDWSCFTTLMKEHGDAEAEDAAWKASNVAQKQ
Ga0335075_100314974	3300032896	Soil	MYQGNCVCCGRKVRTDGNWLKAHLWGSTAVFDWSCFTTLMKEHGEAAAEDAAWKASNVAQKQ
Ga0335075_106327021	3300032896	Soil	GRKVRTDGNWLKAHLWGSTAVFDWSCFTTLMKEHGEAVAENAAWKASNVAQKQ
Ga0335075_107381222	3300032896	Soil	MYPGNCVCCGRKVRTDGNWLKAHLWGSTAVFDWSCFTTLMKEHGETAAEDAAWKANNVAQKQ
Ga0335076_108798523	3300032955	Soil	MSAIYLANCARCERKVRTDGNYLKAHLWASTALFHWECFIALMKERGAAAAEDAAWKA
Ga0335073_1001041510	3300033134	Soil	MSTMYQGNCARCERKVRTEENFLKARLWASTAVFHWNCFLLLMKEHGDKAAEEATWTASRIDRV
Ga0335073_100584884	3300033134	Soil	MSAIYLGNCARCERKVRTDGNYLKAHLWASTALFHWECFIALMKERGAAAAEDAAWKASRIDRV
Ga0335073_107103621	3300033134	Soil	CVCCGRKVRTDGNWLKAHLWGSTAVFDWSCFTTLMKEHGEAAAEDAAWKANNIAQKQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093174

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences