Metagenome Family F093159

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093159
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	66 residues
Representative Sequence	MSETSAPRRVLHLVIEGFPAARLEEIAGSSPGTTDVTREIFPLTEANAREALEKIFAADTVAVWGAV
Number of Associated Samples	66
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	4.72 %
% of genes near scaffold ends (potentially truncated)	19.81 %
% of genes from short scaffolds (< 2000 bps)	67.92 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.396 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog (23.585 % of family members)
Environment Ontology (ENVO)	Unclassified (38.679 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (42.453 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.16% β-sheet: 22.11% Coil/Unstructured: 54.74%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF02635	DrsE	16.98
PF01145	Band_7	8.49
PF00406	ADK	6.60
PF09907	HigB_toxin	4.72
PF06764	DUF1223	1.89
PF08531	Bac_rhamnosid_N	1.89
PF00027	cNMP_binding	1.89
PF02897	Peptidase_S9_N	1.89
PF12833	HTH_18	1.89
PF02781	G6PD_C	0.94
PF08323	Glyco_transf_5	0.94
PF00512	HisKA	0.94
PF06723	MreB_Mbl	0.94
PF03966	Trm112p	0.94
PF00215	OMPdecase	0.94
PF01887	SAM_HAT_N	0.94
PF12706	Lactamase_B_2	0.94
PF08668	HDOD	0.94
PF11175	DUF2961	0.94
PF02201	SWIB	0.94
PF14237	GYF_2	0.94
PF13432	TPR_16	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0563	Adenylate kinase or related kinase	Nucleotide transport and metabolism [F]	6.60
COG1505	Prolyl endopeptidase PreP, S9A serine peptidase family	Amino acid transport and metabolism [E]	1.89
COG1770	Protease II	Amino acid transport and metabolism [E]	1.89
COG5429	Uncharacterized conserved protein, DUF1223 domain	Function unknown [S]	1.89
COG0297	Glycogen synthase	Carbohydrate transport and metabolism [G]	0.94
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	0.94
COG0438	Glycosyltransferase involved in cell wall bisynthesis	Cell wall/membrane/envelope biogenesis [M]	0.94
COG1077	Cell shape-determining ATPase MreB, actin-like superfamily	Cell cycle control, cell division, chromosome partitioning [D]	0.94
COG1912	Stereoselective (R,S)-S-adenosylmethionine hydrolase (adenosine-forming)	Defense mechanisms [V]	0.94
COG5531	DNA-binding SWIB/MDM2 domain	Chromatin structure and dynamics [B]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.40 %
Unclassified	root	N/A	6.60 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.40 %
Unclassified	root	N/A	6.60 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.40 %
Unclassified	root	N/A	6.60 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	67.92 %
Unclassified	root	N/A	6.60 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	67.92 %
Unclassified	root	N/A	6.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	6.60 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	5.66 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	3.77 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	6.60 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	5.66 %
Verrucomicrobia bacterium LW23	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23	2.83 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	6.60 %
Verrucomicrobia bacterium LW23	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23	2.83 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	1.89 %
unclassified Verrucomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales	0.94 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	6.60 %
Verrucomicrobia bacterium LW23	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23	2.83 %
unclassified Opitutaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae	1.89 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	0.94 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	6.60 %
Verrucomicrobia bacterium LW23	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23	2.83 %
Opitutaceae bacterium TAV1	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TAV1	1.89 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	0.94 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	6.60 %
Verrucomicrobia bacterium LW23	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23	2.83 %
Opitutaceae bacterium TAV1	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TAV1	1.89 %
Pedosphaera parvula Ellin514	strain	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	0.94 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003320\|rootH2_10212150	Not Available	1139	Open in IMG/M
3300004091\|Ga0062387_100521052	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	834	Open in IMG/M
3300005548\|Ga0070665_100000201	All Organisms → cellular organisms → Bacteria	105051	Open in IMG/M
3300005563\|Ga0068855_101794726	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	623	Open in IMG/M
3300005616\|Ga0068852_102757021	Not Available	510	Open in IMG/M
3300005841\|Ga0068863_100001200	All Organisms → cellular organisms → Bacteria	25894	Open in IMG/M
3300005842\|Ga0068858_100012718	All Organisms → cellular organisms → Bacteria	7931	Open in IMG/M
3300005842\|Ga0068858_100296328	All Organisms → cellular organisms → Bacteria	1542	Open in IMG/M
3300009093\|Ga0105240_10054426	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5015	Open in IMG/M
3300009177\|Ga0105248_10139243	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2737	Open in IMG/M
3300009500\|Ga0116229_10003540	All Organisms → cellular organisms → Bacteria	25720	Open in IMG/M
3300009709\|Ga0116227_10042911	All Organisms → cellular organisms → Bacteria	4340	Open in IMG/M
3300013306\|Ga0163162_10504323	All Organisms → cellular organisms → Bacteria	1340	Open in IMG/M
3300014168\|Ga0181534_10029669	All Organisms → cellular organisms → Bacteria	2723	Open in IMG/M
3300014168\|Ga0181534_10041027	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2287	Open in IMG/M
3300014168\|Ga0181534_10192435	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1062	Open in IMG/M
3300014169\|Ga0181531_10486632	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	762	Open in IMG/M
3300014201\|Ga0181537_10001057	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	25626	Open in IMG/M
3300014201\|Ga0181537_10291668	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300014201\|Ga0181537_10741298	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	667	Open in IMG/M
3300014489\|Ga0182018_10179046	Not Available	1196	Open in IMG/M
3300014489\|Ga0182018_10270474	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	931	Open in IMG/M
3300014493\|Ga0182016_10417635	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	790	Open in IMG/M
3300014495\|Ga0182015_10185564	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300014495\|Ga0182015_10601962	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	697	Open in IMG/M
3300014495\|Ga0182015_10690933	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	644	Open in IMG/M
3300014496\|Ga0182011_10198883	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1364	Open in IMG/M
3300014499\|Ga0182012_10061212	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	2975	Open in IMG/M
3300014499\|Ga0182012_10698641	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	647	Open in IMG/M
3300014501\|Ga0182024_10001347	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	63767	Open in IMG/M
3300014501\|Ga0182024_10213729	All Organisms → cellular organisms → Bacteria	2622	Open in IMG/M
3300014654\|Ga0181525_10003883	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	11659	Open in IMG/M
3300014657\|Ga0181522_10312691	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
3300014838\|Ga0182030_10002299	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	40479	Open in IMG/M
3300014838\|Ga0182030_10043670	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	7372	Open in IMG/M
3300014838\|Ga0182030_10061297	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	5756	Open in IMG/M
3300014838\|Ga0182030_10333198	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1640	Open in IMG/M
3300014838\|Ga0182030_10348919	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1584	Open in IMG/M
3300015206\|Ga0167644_1027899	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2326	Open in IMG/M
3300020034\|Ga0193753_10160744	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1061	Open in IMG/M
3300020061\|Ga0193716_1026042	All Organisms → cellular organisms → Bacteria	2894	Open in IMG/M
3300025913\|Ga0207695_10053410	All Organisms → cellular organisms → Bacteria	4226	Open in IMG/M
3300025913\|Ga0207695_10752987	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	854	Open in IMG/M
3300026035\|Ga0207703_10006516	All Organisms → cellular organisms → Bacteria	9316	Open in IMG/M
3300026035\|Ga0207703_10284922	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1502	Open in IMG/M
3300026088\|Ga0207641_10004959	All Organisms → cellular organisms → Bacteria	11418	Open in IMG/M
3300026319\|Ga0209647_1027405	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3398	Open in IMG/M
3300027860\|Ga0209611_10015074	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	10164	Open in IMG/M
3300028036\|Ga0265355_1001946	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1401	Open in IMG/M
3300028745\|Ga0302267_10041634	All Organisms → cellular organisms → Bacteria	2722	Open in IMG/M
3300028748\|Ga0302156_10424371	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	576	Open in IMG/M
3300028766\|Ga0302269_1193330	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	573	Open in IMG/M
3300028866\|Ga0302278_10182806	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TAV1	1058	Open in IMG/M
3300029882\|Ga0311368_10119230	All Organisms → cellular organisms → Bacteria	2214	Open in IMG/M
3300029911\|Ga0311361_10033432	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	8883	Open in IMG/M
3300029911\|Ga0311361_10046548	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	7083	Open in IMG/M
3300029911\|Ga0311361_10776834	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	855	Open in IMG/M
3300029911\|Ga0311361_11516030	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	504	Open in IMG/M
3300029913\|Ga0311362_10280932	All Organisms → cellular organisms → Bacteria	1765	Open in IMG/M
3300029914\|Ga0311359_10287080	All Organisms → cellular organisms → Bacteria	1369	Open in IMG/M
3300029914\|Ga0311359_10370151	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1146	Open in IMG/M
3300029915\|Ga0311358_10480051	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300029922\|Ga0311363_10379179	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1521	Open in IMG/M
3300029951\|Ga0311371_10943961	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23	1035	Open in IMG/M
3300029953\|Ga0311343_10796439	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300029953\|Ga0311343_11181557	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	585	Open in IMG/M
3300029954\|Ga0311331_11542909	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	540	Open in IMG/M
3300029955\|Ga0311342_11260325	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	528	Open in IMG/M
3300030004\|Ga0302186_10209581	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	669	Open in IMG/M
3300030007\|Ga0311338_11365521	Not Available	661	Open in IMG/M
3300030020\|Ga0311344_10723125	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	825	Open in IMG/M
3300030503\|Ga0311370_10296105	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2097	Open in IMG/M
3300030503\|Ga0311370_10499535	All Organisms → cellular organisms → Bacteria	1491	Open in IMG/M
3300030503\|Ga0311370_10797586	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1089	Open in IMG/M
3300030503\|Ga0311370_11802887	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	622	Open in IMG/M
3300030503\|Ga0311370_12011566	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	577	Open in IMG/M
3300030503\|Ga0311370_12419430	Not Available	508	Open in IMG/M
3300030507\|Ga0302192_10108304	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TAV1	1286	Open in IMG/M
3300030507\|Ga0302192_10302037	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	667	Open in IMG/M
3300030521\|Ga0307511_10000128	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	69098	Open in IMG/M
3300031231\|Ga0170824_106804979	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6373	Open in IMG/M
3300031234\|Ga0302325_11573980	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	840	Open in IMG/M
3300031234\|Ga0302325_12003031	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	714	Open in IMG/M
3300031236\|Ga0302324_100162156	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23	3642	Open in IMG/M
3300031236\|Ga0302324_100740841	All Organisms → cellular organisms → Bacteria	1379	Open in IMG/M
3300031236\|Ga0302324_101132176	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23	1050	Open in IMG/M
3300031236\|Ga0302324_101449747	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	895	Open in IMG/M
3300031236\|Ga0302324_101957150	Not Available	738	Open in IMG/M
3300031236\|Ga0302324_101967728	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	735	Open in IMG/M
3300031259\|Ga0302187_10138472	All Organisms → cellular organisms → Bacteria	1333	Open in IMG/M
3300031524\|Ga0302320_10361811	All Organisms → cellular organisms → Bacteria	1863	Open in IMG/M
3300031524\|Ga0302320_10603462	Not Available	1283	Open in IMG/M
3300031524\|Ga0302320_10968294	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	909	Open in IMG/M
3300031524\|Ga0302320_11017538	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	877	Open in IMG/M
3300031525\|Ga0302326_10430314	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2032	Open in IMG/M
3300031525\|Ga0302326_11067418	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1126	Open in IMG/M
3300031525\|Ga0302326_11234923	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1025	Open in IMG/M
3300031525\|Ga0302326_11360060	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	963	Open in IMG/M
3300031525\|Ga0302326_13215916	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	551	Open in IMG/M
3300031708\|Ga0310686_107733874	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	1711	Open in IMG/M
3300032562\|Ga0316226_1069061	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1752	Open in IMG/M
3300032579\|Ga0316228_1027777	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2500	Open in IMG/M
3300032668\|Ga0316230_1131896	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300032782\|Ga0335082_10275942	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1559	Open in IMG/M
3300033402\|Ga0326728_11103584	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	537	Open in IMG/M
3300033888\|Ga0334792_079043	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	949	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.13%
Host-Associated	Host-Associated	18.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.87%
Plants	Host-Associated → Plants	18.87%
Aquatic	Environmental → Aquatic	12.26%

Habitat	Taxonomy	Distribution
Peat	Environmental → Terrestrial → Peat	47.17%
Soil	Environmental → Terrestrial → Soil	21.70%
Freshwater	Environmental → Aquatic → Freshwater	12.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.49%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.66%
Peat Moss	Host-Associated → Plants → Peat Moss	2.83%
Roots	Host-Associated → Plants → Roots	0.94%
Rhizome	Host-Associated → Plants → Rhizome	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	47.17%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	16.04%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.43%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.49%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	5.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.77%
Lentic	Environmental → Aquatic → Freshwater → Lentic	2.83%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	2.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	47.17%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	15.09%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.49%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	3.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.77%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	2.83%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	2.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	23.58%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	20.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	8.49%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	7.55%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.66%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	4.72%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.83%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	2.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.89%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.94%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.94%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.94%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.94%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.94%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.94%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003320	Sugarcane root Sample H2	Host-Associated	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014496	Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015206	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020061	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300027860	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)	Host-Associated	Open in IMG/M
3300028036	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2	Host-Associated	Open in IMG/M
3300028745	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_3	Environmental	Open in IMG/M
3300028748	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2	Environmental	Open in IMG/M
3300028766	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_2	Environmental	Open in IMG/M
3300028866	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029915	III_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029922	III_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029953	II_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029955	II_Bog_E2 coassembly	Environmental	Open in IMG/M
3300030004	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_1	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030507	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_2	Environmental	Open in IMG/M
3300030521	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM	Host-Associated	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031259	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_3	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032562	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18017	Environmental	Open in IMG/M
3300032579	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18021	Environmental	Open in IMG/M
3300032668	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18025	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033888	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
rootH2_102121502	3300003320	Sugarcane Root And Bulk Soil	IVPHRILHLVVEGFPPEREAELPMPSPGSGDAAEIFHLTEANAREALEKIFSADVVTVWGQV*
Ga0062387_1005210522	3300004091	Bog Forest Soil	MSETSQKPRRVLHLVIEGFPTDKLAELSAPSPGATDVTEIFPLTESNAREALGKIFAADTVAVWGKV*
Ga0070665_10000020178	3300005548	Switchgrass Rhizosphere	MSETSSLRRVLHLVVEGFSPERIQELVNPVDGGGEVVEIFQLTETSAAEALEKIFTADAVAVWGEV*
Ga0068855_1017947262	3300005563	Corn Rhizosphere	MSEATTRRVLHLVIEGFPPERKGELAGGSNDVTEIFQLTETNAREALEKIFAADTVAVWGKV*
Ga0068852_1027570212	3300005616	Corn Rhizosphere	ILHLIVEGFPPKRLEELSKSDKAPNDIVEIFQLTEASAHEALEKIFAADTVAVWGKI*
Ga0068863_10000120013	3300005841	Switchgrass Rhizosphere	MSETSSPRRVLHLVVEGFSPERIQESANPSSGAGDTTEIFQLTEASAAEALEKIFAADTVAVWSDLAAGTK*
Ga0068858_1000127184	3300005842	Switchgrass Rhizosphere	MSEATPRRVLHLIVEGFPPERLEELSASDKAPNDIVEIFQLTEASAHEALEKIFAADTVAVWGKV*
Ga0068858_1002963282	3300005842	Switchgrass Rhizosphere	MSETSSSRRVLHLVVEGFPPYHLQEIVKTSDRAGDGAEIFQLTETSAQEALEKIFAADTVAVWGDVSPTRT*
Ga0105240_100544264	3300009093	Corn Rhizosphere	MSETTSRRVLHLVVEDFPPERLEKLAASAGRSSDITEIFQLTEANAREALGKIFEADTVAVWGKV*
Ga0105248_101392431	3300009177	Switchgrass Rhizosphere	MSETSSPRRVLHLVVEGFPPERLGEITGSSSGVDNSAEIFQLTETSAGEALEKIYAADTVAVWGKVGPG*
Ga0116229_1000354025	3300009500	Host-Associated	MRAPSSPRRVLHLVVEGFPQERIEELAKPSPESNDVTEIFPLTAANAKEALEKIFAADTVAVWGKL*
Ga0116227_100429112	3300009709	Host-Associated	MSEPSAPRRILHLVVDGFSGARLEEITGASAGNTDVTEILPLTEANAREALEKIFAADTVAVWSKTE*
Ga0163162_105043232	3300013306	Switchgrass Rhizosphere	LRRVLHLVVEGFSPERIQELVNPVDGGGEVVEIFQLTEINAAEALEKIFAADTVAVWGEV
Ga0181534_100296694	3300014168	Bog	MSETSSPRRVLHLIVEGFPPHRMQEISVTSSGTDEVTEIFELTEANAREALEKIFAADTVAVWGELPA*
Ga0181534_100410275	3300014168	Bog	FMSESSAPRRILHLVVEGFPAARLEEIAKGAPGATDLTEIFPLTEANAREALEKIFAADTVAVWGALSL*
Ga0181534_101924352	3300014168	Bog	MSETSSHPRRILHLVVEGFSADKLKEIAGSSPETAGVTEIFPLTEANAREALEKIFAADTVAVWGPI*
Ga0181531_104866322	3300014169	Bog	MSETSSPRRVLHLIVEGFPPGRLQEIAGTSSGTDDVTELFELTEANAREALEKIFAA
Ga0181537_1000105711	3300014201	Bog	MSESSAPRRILHLVVEGFPAARLEEIAKGAPGATDLTEIFPLTEANAREALEKIFAADTVAVWGDLSL*
Ga0181537_102916682	3300014201	Bog	MSETSPPRRVLHLIVEGFPPRRMEEIAGASSGTDEVTEIFELTEANAREALEKIFAADTVAVWGELPA*
Ga0181537_107412981	3300014201	Bog	MSETSPPRRVLHLIVEGFPPRRMQEITGTNSGTDDVTEIFELTEASAREALEKIVAADTVAVWGDVPA*
Ga0182018_101790462	3300014489	Palsa	MSETTPPRRVLHLIVEGFPAARWKEIEGASSGPDEVTEFFELTEANAPEALEKIFAADTVAVWGNVPA*
Ga0182018_102704742	3300014489	Palsa	MSETSAPRRVLHLVIEGFPAARLEEIAGSSPGTTDVTREIFPLTEANAREALEKIFAADTVAVWGAV*
Ga0182016_104176352	3300014493	Bog	MSETPLPRRVLHLIVEGLSPARLEKIAGSVGGAGDVTEIFQLTESSAREALEKIFAADTVAVWGEV*
Ga0182015_101855643	3300014495	Palsa	MSEPSQNSRRILHLLIEGFPAAMLEEIAASSPRPADVTEIFQLTETNAREALDKIFAADTIAVWGKV*
Ga0182015_106019621	3300014495	Palsa	MNGETSAPRRVLHLVIEDFPAGRLAEIVESSPETAGVTEIFPLTEANAREALGKIFAADTVAVWTMTE*
Ga0182015_106909332	3300014495	Palsa	MSGETAAPRRILHLVVEGFPPARLEEIAGSAGGANDITEIFQLTEASAPEALKKIFVADTVAVWGEI*
Ga0182011_101988834	3300014496	Fen	MSETSAPRRVLHLVIDDFPAGRLAEIVESSPGTTDVIEIFPLTESNAREALEKIFAADTVAVWGNI*
Ga0182012_100612125	3300014499	Bog	MSESSAPRRILHLVVEGFPAARLEEIAKSSPGATELTEIFPLTKANAGEALEKIFAADTLAVWGDLSL*
Ga0182012_106986412	3300014499	Bog	MSETSNPRRVLHLVIEGFPADRAAEMVEAAPETIGVTEIFPLTEANAREALEKIFAADTVAVWGSIS*
Ga0182024_1000134721	3300014501	Permafrost	MSENIPNPRRILHLVIEDFPAGKLAKIVESLPANTAEMEIFPLTQENAREALEKIFAADTVAVWGDVSVRVDELDN*
Ga0182024_102137293	3300014501	Permafrost	MSETLPNPRRALHLVIEGFPADRLAEIAGSAPGTAGVTEIFPLTESNAREALGKIFAADTVAVWGEV*
Ga0181525_100038835	3300014654	Bog	MSESSAPRRILHLVVEGFPAARLEEIAKGAPGATDLTEIFPLTEANAREALEKIFAADTVAVWGALSL*
Ga0181522_103126912	3300014657	Bog	MNETSPPRRVLHLIVEGFPPHRMQEISVTSSGTDEVTEIFELTEANAREALEKIFAADTVAVWGGLPA*
Ga0182030_1000229920	3300014838	Bog	MNEETSAPRRVLHLVIEGFPADKLEEVAKSSPGPTDVTEIFQLTEANAREALEKIFAADTVAVWGRAE*
Ga0182030_100436709	3300014838	Bog	MSVETFPNPRRILHLVVEGYPAARLEELAESSRGTTGVTEIFPLTESTAREALGKIFAADTVAVWGKL*
Ga0182030_100612975	3300014838	Bog	MSETTPNPRRVLHLVIDDFSAGKLAEIVESLPANIGEMEIFPLTEANAREALEKIFTADTVAVWGKTE*
Ga0182030_103331984	3300014838	Bog	MSDPLPHPRRILHLVIEGFPAEKLTELSTPAPDTSNVIEIFPLTEANAKEALEKIFAADTVAVWTKT*
Ga0182030_103489192	3300014838	Bog	MSETFPKPRRVLHLVIEGFSAARLAEIVESSPGTTDVTEIFRLTEANAGEALGKIFAADTVAAWTKTE*
Ga0167644_10278994	3300015206	Glacier Forefield Soil	MSETIPNPRRVLHLVIDDFPADKLAGIVESSPDSIGATEIFHLTEANAREALGQIFAADTIAVWSNVAV*
Ga0193753_101607442	3300020034	Soil	MSETLPNPRRVLHLVIEGFPADKLAEISASSQATTDVTEIFQLTESNAPEALEKIFTADTIAVWGHI
Ga0193716_10260422	3300020061	Soil	MSETPRHILHLVIEGFPAARLEEIAESSPATNDVTEIFQLTEANAREALGKIFAADTIAVWGKAE
Ga0207695_100534104	3300025913	Corn Rhizosphere	MSETSSLRRVLHLVVEGFSPERIQELVNPVDGGGEVVEIFQLTETSAAEALEKIFTADAVAVWGEV
Ga0207695_107529873	3300025913	Corn Rhizosphere	VEDFPPERLEKLAASAGRSSDITEIFQLTEANAREALGKIFEADTVAVWGKV
Ga0207703_100065164	3300026035	Switchgrass Rhizosphere	MSEATPRRVLHLIVEGFPPERLEELSASDKAPNDIVEIFQLTEASAHEALEKIFAADTVAVWGKV
Ga0207703_102849224	3300026035	Switchgrass Rhizosphere	MSETSSSRRVLHLVVEGFPPYHLQEIVKTSDRAGDGAEIFQLTETSAQEALEKIFAADTVAVWGDVSPTRT
Ga0207641_1000495913	3300026088	Switchgrass Rhizosphere	MSETSSPRRVLHLVVEGFSPERIQESANPSSGAGDTTEIFQLTEASAAEALEKIFAADTVAVWSDLAAGTK
Ga0209647_10274054	3300026319	Grasslands Soil	MSGETLPNPRRVLHLVVEGFPAERRGELAEPSPGTVVEVYPLTESNAREALEKIFAADAVAVWGGL
Ga0209611_100150747	3300027860	Host-Associated	MRAPSSPRRVLHLVVEGFPQERIEELAKPSPESNDVTEIFPLTAANAKEALEKIFAADTVAVWGKL
Ga0265355_10019462	3300028036	Rhizosphere	MSETPRRILHLVIEGLPAARIEEITGSSPATTGVTEIFQLTEANAREALGKIFAADTVAVWGEV
Ga0302267_100416342	3300028745	Bog	MSEASQKPRRILHLVIEGFPAERLAELSGPAAGTNEVTEIFPLTEASAREALGKIFAADTVAVWGAVD
Ga0302156_104243711	3300028748	Bog	MSEETFPNPRRVLHLVVGDFPTARMAEIVESSPETTGTTEIFPLTESNAAEALEKIFTADTVAVWSNLE
Ga0302269_11933302	3300028766	Bog	MSESATPRRILHLVVEGFPTEGLEEIAKAAPGTNDIFEIYPLTEANAREALEKIFAADT
Ga0302278_101828062	3300028866	Bog	FPNPRRVLHLVVGDFPTARMAEIVESSPETTGTTEIFPLTESNAAEALEKIFTADTVAVWSNLE
Ga0311368_101192304	3300029882	Palsa	MSEASPSHRVLHLVVEGFPAERMQELDSAAPDANTVTEIFQLTDSNAREALEKIFAADTVAVWTPVS
Ga0311361_100334329	3300029911	Bog	MNGETSAPRRILHLVLEDFPAAWLEEIAATSPSTTGVTEIFPLTESNAREALEKIFASDTVAVWGKIEY
Ga0311361_100465481	3300029911	Bog	ARQRLSDSFMREPAEKRRVLHLVVEGFPADKLAVLSVPAPGTADAVEIFPLTESNAREALEKIFAADTIAVWGRIE
Ga0311361_107768342	3300029911	Bog	MSETTPNPRRILHLVIDELSAGKLAKIVEASPETIGATEIFQLTETSAREALEKIFTADTVAVWGRTD
Ga0311361_115160301	3300029911	Bog	MSEAPSSPRRVLHLIVEGFPPARLAELAGPTDGTDDVTEIFQLTEASAREALEKIFAADTVAVWSSLV
Ga0311362_102809325	3300029913	Bog	MREPAEKRRVLHLVVEGFPADKLAVLSVPAPGTADAVEIFPLTESNAREALEKIF
Ga0311359_102870801	3300029914	Bog	MREPAEKRRVLHLVVEGFPADKLAVLSVPAPGTADAVEIFPLTESNAREALEKIFAADTIAVWGRIE
Ga0311359_103701512	3300029914	Bog	SRCVLHLVIGDFPASRMAEMVESEPQNVGVMEILPLTESNAREALEKIFAADTVAVWGNI
Ga0311358_104800512	3300029915	Bog	MSETTPNPRRVLHLVIDDVSAGKLAEILESLPANIGELEVFSLTEANAGEALEKIFAADTVAVWGKTE
Ga0311363_103791793	3300029922	Fen	MSAPTPNPRRVLHLVVEGFAEDTHADILKPQPGTTDVIEIFPLTEANAHEALEKIFAADTVAVWGKL
Ga0311371_109439613	3300029951	Palsa	MSEASPSHRVLHLVIEGFPAERMQELDSAAPDANTVTEIFQLTDSNAREALEKIFAADTVAVWTPVS
Ga0311343_107964391	3300029953	Bog	MSETSNPRRVLHLVIEGFPADRAAEMVEAAPETIGVTEIFPLTEANAREALEKIFAADTVAVWGSIS
Ga0311343_111815571	3300029953	Bog	MSETTPNPRRILHLVIDDFPAGKLAEIVESLPANIGEMEVFSLTQANAGEALEKIFTADTIAVWGS
Ga0311331_115429091	3300029954	Bog	MSEISAPRRVLHLVIEGFPADQLKELSAPSPGTTDVTEIFPLTETSAREALEKIFASDTVAVWGKV
Ga0311342_112603251	3300029955	Bog	MSASTPNPRRVLHLIVEGFAEDTHADILKPQPGTTDVIEIFPLTEANAHEALEKIFAADT
Ga0302186_102095811	3300030004	Bog	MSESATPRRILHLVVEGFPIDRLEEVAKASPGSTDVTEIFPLTEANAREALVKIFE
Ga0311338_113655212	3300030007	Palsa	MSAETFLNPRRVLHLVIEGFPASRLEEIVESAPETNAVTEIFQLTEANAREALEKIFAADTVAVWTGTE
Ga0311344_107231252	3300030020	Bog	MSESATPRRILHLVVEGFPTEGLEEIAKAAPGTNDIFEIYPLTEANAREALEKIFAADTVAVWGDLSV
Ga0311370_102961052	3300030503	Palsa	MSETSPPRRVLHLVIEGFAADNLAEISAPSPGTTDVVEIFPLTEANAAAALGKIFAADTIAVWGKVD
Ga0311370_104995352	3300030503	Palsa	MSEASSRRILHLVIEGFPPERMEALAKSDKAPNDVVEIFQLTEASAREALEKIFAADTVAVWGKI
Ga0311370_107975863	3300030503	Palsa	MSETQPRRILHLVIDGYPAAQLAEVLQASPETKVATEIFALSSASAREALDKIFAADTIAVWGKL
Ga0311370_118028872	3300030503	Palsa	MSETSAPRRILHLVIEGFPADKLEEIVKLSPGTNDITEIFPLTEANACEALGKIFAADTVAVWGKV
Ga0311370_120115661	3300030503	Palsa	MSEETFPRPRRILHLIIDGFPADRLEEITRSSPGTTGVTEILQLTESNAPEALEKIFAADTVAVWGKI
Ga0311370_124194301	3300030503	Palsa	LHLVIEGFPPERIAALNAPASGAGDITEVFQLTEASAPEALEKIFAADTVAVWSDLARHE
Ga0302192_101083042	3300030507	Bog	ETFPNPRRVLHLVVGDFPTARMAEIVESSPETTGTTEIFPLTESNAAEALEKIFTADTVAVWSNLE
Ga0302192_103020371	3300030507	Bog	MSETSAPHRVLHLIVEGFPPARLEELARSTGGSDDVTEIFQLTEADAHEALEKIFAADTVAVWGELKM
Ga0307511_1000012815	3300030521	Ectomycorrhiza	MSETPAAHRILHLVVEGFPSARLEELAGSTDGSGHVTEIFQLTEASAREALEKIFAADTVAVWGKV
Ga0170824_1068049794	3300031231	Forest Soil	MSEASVPHRVLHLIVEGFPPARLEELAGSTIGTDEVAEIFELSEASAREALEKIFAAATIAVWGGVSV
Ga0302325_115739803	3300031234	Palsa	MSETIPNPRRVLHLVINDFPAGRLAELSAPSPGTTGVTREIFPLTEANAREALEKIFAADTVAVWSKL
Ga0302325_120030312	3300031234	Palsa	MSETSDETPTPRRVLHLVIEGFPSDRLAELSTPTPGATDVIEVFPLTEANAGEALEKIFA
Ga0302324_1001621568	3300031236	Palsa	MSEETFPRPRRILHLIIDGFPADRLEEITRSSPGTTGVTEILQLTESNAPEALEKIFAADTVAVWGP
Ga0302324_1007408414	3300031236	Palsa	MNETSAPCRVLHLVIEGFPADRLKALAESSQGTTDVTEIFQLTEANAREALEKIFAADTIAVWSEVWRRF
Ga0302324_1011321763	3300031236	Palsa	MNENPPAPRRVLHLAIEGFPADKLEEIAGSALETTDAMEIFQLTEANAREALEKIFAADAVMVWGNI
Ga0302324_1014497472	3300031236	Palsa	MSGETSAPHRILHLVIEGFPPARLEEITGSADGADGVTEIFQLTEASAPEALKKIFAADGIAVWGSI
Ga0302324_1019571502	3300031236	Palsa	MSETSPPRRVLHLIVEGFPAARWKEIEGTSSGPDDVTEFFELTETNAPEALEKIFAADTVAVWGDLPPR
Ga0302324_1019677281	3300031236	Palsa	MSEASPPRRVLHLIIDGFPADRLVELAAHTHGTSDATEIFPLTESSARAALEKIFASDTVAVWGKL
Ga0302187_101384721	3300031259	Bog	MSESATPRRILHLVVEGFPTEGLEEIAKAAPGTNDIFEIYPLTEANAREALEKIFAADTVAVWGDLS
Ga0302320_103618112	3300031524	Bog	MSETSAPRRVLHLVIEGFSADRLEELAKSSSGTTDVTEIFQLTEANARAALEKIFASDTIAVWGDVAPGNSP
Ga0302320_106034623	3300031524	Bog	MSETTPNPRRVLHLVIDDFPAGKLSEIVEASPETTGVTEIFQLTEASAGEALEKIFAADTVAVWGKLE
Ga0302320_109682941	3300031524	Bog	MNEETSVPRCVLHLVIEEFSAAKLAEIVESSPDAVTEIFPLTESNAGEALGKIFAADTVAVWSDL
Ga0302320_110175381	3300031524	Bog	MSASTPNPRRVLHLIVEGFAEDTHADILKPQPGTTDVIEIFPLTEANAHEALEKIFAADTVAVWGKL
Ga0302326_104303144	3300031525	Palsa	MSETSDETPTPRRVLHLVIEGFPSDRLAELSTPTPGATDVIEVFPLTEANAGEALEKIFAADAVAVWGKI
Ga0302326_110674183	3300031525	Palsa	MSETSPLRRVLHLVVEGFPADRLEEIGASSRETTDLTEIFQLTETNAPEALEKIFASDTVAVWGKI
Ga0302326_112349234	3300031525	Palsa	MSEIPPAPRRALHLVIEGFPTDKLKEMVGSPPETTGVTEIFQLTEANAREALEKIFAADTVAVWGAI
Ga0302326_113600602	3300031525	Palsa	MSEISPAPRRVLHLVVEGFPTDRLGEITESSPGSTEVTEIFPLTETNAREALEKIFAADTVAVWTRTE
Ga0302326_132159161	3300031525	Palsa	MSEVSAPRRVLHLVVEGFPAARLKELAESSLGTTDATEIFPLTEATAREALGKIFAADTVAVWGE
Ga0310686_1077338742	3300031708	Soil	MNEPFPNPRRVLHLVINHFPAATLEMLAVSSPGTNDVTEIFPLTESNAREALGKIFAADTVAVWGDVECSGGL
Ga0316226_10690611	3300032562	Freshwater	MNGETSAPRRVLHLVIEGFPADRLKEFAESSPATTGVTEILSLTESNAREVLAKIFAADTIALWGQV
Ga0316228_10277772	3300032579	Freshwater	MGKLPRRVLHLVIEGFPADRLKEFAESSPATTGVTEILSLTESNAREVLAKIFAADTIALWGQV
Ga0316230_11318961	3300032668	Freshwater	YPFMNGETSAPRRVLHLVIEGFPADRLKEFAESSPATTGVTEILSLTESNAREVLAKIFAADTIALWGQV
Ga0335082_102759423	3300032782	Soil	MSEASSLRRVLHLVVEGAPARTAEKVTLMACETPHDFEVFTLTETNAREALEKIFAADTVAVWSDV
Ga0326728_111035841	3300033402	Peat Soil	AGLLPRLPDSFMSEETSVSPSRCVLHLVIGDFPASRMAEMVESEPQNVGVMEILPLTESNAREALEKIFAADTVAVWGNI
Ga0334792_079043_568_774	3300033888	Soil	MNEETSAPRRILHLVIEDFPAAKLAEIVESSPETTGITEIFPLTESNAREALDKIFAADTVAVWGLTM

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F093159

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences