NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F093104

Metagenome / Metatranscriptome Family F093104

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F093104
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 50 residues
Representative Sequence MSKFFSLAALVVGGIIVADILTHPSGTAAASKGLAGITTPAINGLLGK
Number of Associated Samples 82
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 84.91 %
% of genes near scaffold ends (potentially truncated) 26.42 %
% of genes from short scaffolds (< 2000 bps) 68.87 %
Associated GOLD sequencing projects 74
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (74.528 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil
(20.755 % of family members)
Environment Ontology (ENVO) Unclassified
(24.528 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(39.623 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: Yes Secondary Structure distribution: α-helix: 57.89%    β-sheet: 0.00%    Coil/Unstructured: 42.11%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.48
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF03175DNA_pol_B_2 2.83
PF08241Methyltransf_11 0.94
PF00145DNA_methylase 0.94
PF12961DUF3850 0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 106 Family Scaffolds
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 0.94


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A74.53 %
All OrganismsrootAll Organisms25.47 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001356|JGI12269J14319_10074152All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces collinus1854Open in IMG/M
3300003375|JGI26470J50227_1007000Not Available3007Open in IMG/M
3300003797|Ga0007846_1001429Not Available3482Open in IMG/M
3300003797|Ga0007846_1012952Not Available778Open in IMG/M
3300003812|Ga0007861_1008215Not Available985Open in IMG/M
3300003813|Ga0007879_1020444Not Available679Open in IMG/M
3300003852|Ga0031655_10142448Not Available936Open in IMG/M
3300004694|Ga0065170_1000976All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinocrispum → Actinocrispum wychmicini3943Open in IMG/M
3300004807|Ga0007809_10018027Not Available2502Open in IMG/M
3300005534|Ga0070735_10400415Not Available822Open in IMG/M
3300006071|Ga0007876_1001834Not Available6971Open in IMG/M
3300006100|Ga0007806_1076673Not Available624Open in IMG/M
3300006104|Ga0007882_10004763All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces collinus7251Open in IMG/M
3300006106|Ga0007833_1099771Not Available513Open in IMG/M
3300009521|Ga0116222_1013390All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces collinus3813Open in IMG/M
3300009523|Ga0116221_1250544Not Available765Open in IMG/M
3300009824|Ga0116219_10428901Not Available736Open in IMG/M
3300009824|Ga0116219_10601561Not Available604Open in IMG/M
3300009839|Ga0116223_10656548Not Available603Open in IMG/M
3300010158|Ga0114960_10604143Not Available519Open in IMG/M
3300010373|Ga0134128_13013433Not Available518Open in IMG/M
3300010379|Ga0136449_100051246All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces collinus9276Open in IMG/M
3300010379|Ga0136449_100069712All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces collinus7560Open in IMG/M
3300010379|Ga0136449_100322837All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces collinus2796Open in IMG/M
3300010379|Ga0136449_102010457Not Available853Open in IMG/M
3300010379|Ga0136449_102966508Not Available664Open in IMG/M
3300010379|Ga0136449_103070181All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea thailandensis649Open in IMG/M
3300013094|Ga0164297_10015034All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinocrispum → Actinocrispum wychmicini5258Open in IMG/M
3300013094|Ga0164297_10019954All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinocrispum → Actinocrispum wychmicini4222Open in IMG/M
3300014168|Ga0181534_10058333Not Available1903Open in IMG/M
3300014168|Ga0181534_10062818All Organisms → cellular organisms → Bacteria1831Open in IMG/M
3300014200|Ga0181526_10400597Not Available871Open in IMG/M
3300014492|Ga0182013_10090787All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces collinus2100Open in IMG/M
3300014492|Ga0182013_10418625Not Available715Open in IMG/M
3300014493|Ga0182016_10002794Not Available20198Open in IMG/M
3300014493|Ga0182016_10366526Not Available862Open in IMG/M
3300014658|Ga0181519_10054647All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces collinus2651Open in IMG/M
3300014838|Ga0182030_10063959All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces collinus5581Open in IMG/M
3300014838|Ga0182030_10208179Not Available2322Open in IMG/M
3300014838|Ga0182030_10236207Not Available2115Open in IMG/M
3300017934|Ga0187803_10078033All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces collinus1302Open in IMG/M
3300021130|Ga0214180_1028905Not Available581Open in IMG/M
3300021475|Ga0210392_11385464Not Available526Open in IMG/M
3300021855|Ga0213854_1017370All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces collinus2568Open in IMG/M
3300025381|Ga0208871_1000293All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinocrispum → Actinocrispum wychmicini17262Open in IMG/M
3300025382|Ga0208256_1000151All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinocrispum → Actinocrispum wychmicini16445Open in IMG/M
3300025382|Ga0208256_1030110Not Available782Open in IMG/M
3300025395|Ga0208109_1055765Not Available533Open in IMG/M
3300025396|Ga0208874_1047085Not Available610Open in IMG/M
3300025598|Ga0208379_1014151Not Available2343Open in IMG/M
3300025648|Ga0208507_1082507Not Available982Open in IMG/M
3300025679|Ga0207933_1171723Not Available620Open in IMG/M
3300027516|Ga0207761_1021889Not Available1283Open in IMG/M
3300027625|Ga0208044_1088439All Organisms → cellular organisms → Bacteria917Open in IMG/M
3300027641|Ga0208827_1148080Not Available655Open in IMG/M
3300027662|Ga0208565_1048494Not Available1372Open in IMG/M
3300027692|Ga0209530_1203343Not Available546Open in IMG/M
3300027854|Ga0209517_10090572Not Available2090Open in IMG/M
3300027854|Ga0209517_10615808Not Available572Open in IMG/M
3300027896|Ga0209777_10065200All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces collinus3222Open in IMG/M
3300027986|Ga0209168_10568296Not Available544Open in IMG/M
3300030520|Ga0311372_11456063Not Available849Open in IMG/M
3300031525|Ga0302326_11209677Not Available1039Open in IMG/M
3300031543|Ga0318516_10321390Not Available894Open in IMG/M
3300031543|Ga0318516_10723894Not Available564Open in IMG/M
3300031545|Ga0318541_10591926Not Available620Open in IMG/M
3300031564|Ga0318573_10356745Not Available785Open in IMG/M
3300031573|Ga0310915_10685770Not Available723Open in IMG/M
3300031668|Ga0318542_10027963Not Available2399Open in IMG/M
3300031668|Ga0318542_10654913Not Available549Open in IMG/M
3300031669|Ga0307375_10002443All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia19031Open in IMG/M
3300031670|Ga0307374_10109546Not Available2343Open in IMG/M
3300031670|Ga0307374_10142869All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces collinus1887Open in IMG/M
3300031670|Ga0307374_10646789Not Available522Open in IMG/M
3300031680|Ga0318574_10441634Not Available761Open in IMG/M
3300031751|Ga0318494_10577597Not Available657Open in IMG/M
3300031759|Ga0316219_1132308Not Available934Open in IMG/M
3300031763|Ga0318537_10090463Not Available1131Open in IMG/M
3300031765|Ga0318554_10027428All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces collinus3030Open in IMG/M
3300031782|Ga0318552_10438014Not Available667Open in IMG/M
3300031805|Ga0318497_10105383Not Available1517Open in IMG/M
3300031819|Ga0318568_10011320Not Available4621Open in IMG/M
3300031823|Ga0307478_10158032Not Available1803Open in IMG/M
3300031879|Ga0306919_10738817Not Available757Open in IMG/M
3300031880|Ga0318544_10380297Not Available549Open in IMG/M
3300031890|Ga0306925_10692086Not Available1068Open in IMG/M
3300031896|Ga0318551_10022198Not Available2971Open in IMG/M
3300031910|Ga0306923_10331499All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces collinus1737Open in IMG/M
3300031941|Ga0310912_11129697Not Available598Open in IMG/M
3300032010|Ga0318569_10454979Not Available597Open in IMG/M
3300032054|Ga0318570_10514235Not Available546Open in IMG/M
3300032065|Ga0318513_10191307Not Available984Open in IMG/M
3300032076|Ga0306924_10952239Not Available946Open in IMG/M
3300032076|Ga0306924_12076881Not Available583Open in IMG/M
3300032117|Ga0316218_1133326Not Available942Open in IMG/M
3300032160|Ga0311301_10268046All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces collinus2785Open in IMG/M
3300032160|Ga0311301_10321795All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces collinus2453Open in IMG/M
3300032160|Ga0311301_11607582Not Available790Open in IMG/M
3300032160|Ga0311301_12130068Not Available647Open in IMG/M
3300032160|Ga0311301_12144623All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea thailandensis644Open in IMG/M
3300032261|Ga0306920_100702253Not Available1490Open in IMG/M
3300032562|Ga0316226_1300166Not Available618Open in IMG/M
3300032665|Ga0316221_1048942Not Available1722Open in IMG/M
3300032895|Ga0335074_10781827Not Available896Open in IMG/M
3300033818|Ga0334804_014981Not Available2877Open in IMG/M
3300033824|Ga0334840_133449Not Available664Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil20.75%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil19.81%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater14.15%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog6.60%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil5.66%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater3.77%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog3.77%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil3.77%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater2.83%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment1.89%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater1.89%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.89%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil1.89%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa1.89%
WatershedsEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds0.94%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater0.94%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake0.94%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.94%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.94%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.94%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.94%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.94%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.94%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.94%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001356Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007EnvironmentalOpen in IMG/M
3300003375Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6EnvironmentalOpen in IMG/M
3300003797Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07EnvironmentalOpen in IMG/M
3300003812Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH22Jun08EnvironmentalOpen in IMG/M
3300003813Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH15Jun09EnvironmentalOpen in IMG/M
3300003852Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HBEnvironmentalOpen in IMG/M
3300004694Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE17Sep08 (version 2)EnvironmentalOpen in IMG/M
3300004807Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug07EnvironmentalOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300006071Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Aug09EnvironmentalOpen in IMG/M
3300006100Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09EnvironmentalOpen in IMG/M
3300006104Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09.1EnvironmentalOpen in IMG/M
3300006106Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Jul07EnvironmentalOpen in IMG/M
3300009521Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaGEnvironmentalOpen in IMG/M
3300009523Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaGEnvironmentalOpen in IMG/M
3300009824Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaGEnvironmentalOpen in IMG/M
3300009839Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaGEnvironmentalOpen in IMG/M
3300010158Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaGEnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300013094Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES058 metaGEnvironmentalOpen in IMG/M
3300014168Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaGEnvironmentalOpen in IMG/M
3300014200Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaGEnvironmentalOpen in IMG/M
3300014492Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaGEnvironmentalOpen in IMG/M
3300014493Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaGEnvironmentalOpen in IMG/M
3300014658Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaGEnvironmentalOpen in IMG/M
3300014838Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300017934Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3EnvironmentalOpen in IMG/M
3300021130Freshwater microbial communities from Trout Bog Lake, WI - 16OCT2007 epilimnionEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021855Metatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_18 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025381Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07 (SPAdes)EnvironmentalOpen in IMG/M
3300025382Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH22Jun08 (SPAdes)EnvironmentalOpen in IMG/M
3300025395Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Jul08 (SPAdes)EnvironmentalOpen in IMG/M
3300025396Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Oct08 (SPAdes)EnvironmentalOpen in IMG/M
3300025598Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug07 (SPAdes)EnvironmentalOpen in IMG/M
3300025648Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09.1 (SPAdes)EnvironmentalOpen in IMG/M
3300025679Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 deep-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300027516Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 (SPAdes)EnvironmentalOpen in IMG/M
3300027625Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027641Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027662Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027692Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027854Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)EnvironmentalOpen in IMG/M
3300027896Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)EnvironmentalOpen in IMG/M
3300027986Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300030520III_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031669Soil microbial communities from Risofladan, Vaasa, Finland - TR-1EnvironmentalOpen in IMG/M
3300031670Soil microbial communities from Risofladan, Vaasa, Finland - OX-3EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031759Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003PEnvironmentalOpen in IMG/M
3300031763Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29EnvironmentalOpen in IMG/M
3300031765Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22EnvironmentalOpen in IMG/M
3300031782Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20EnvironmentalOpen in IMG/M
3300031805Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031880Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032054Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23EnvironmentalOpen in IMG/M
3300032065Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032117Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032562Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18017EnvironmentalOpen in IMG/M
3300032665Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18007EnvironmentalOpen in IMG/M
3300032895Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3EnvironmentalOpen in IMG/M
3300033818Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-MEnvironmentalOpen in IMG/M
3300033824Peat soil microbial communities from Stordalen Mire, Sweden - 714 S2 5-9EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12269J14319_1007415253300001356Peatlands SoilMGSQIFSLAALVVGGIIVADILIHPTGTQAAANGLASLTTPAESALLGGGK*
JGI26470J50227_100700023300003375FreshwaterMSRFFSLAALVVGGIIVADILTHPAGTAAATKGIAGVTNPAIQGLLGK*
Ga0007846_100142983300003797FreshwaterMSKFFSLAALVVGGIIVADILTHPSGTAAASKGLAGITTPAINGLLGK*
Ga0007846_101295213300003797FreshwaterMSRFFSLAALVVGGIXVADIXTHPAGTAAATKGIAGVTNPAIQGLLGK*
Ga0007861_100821523300003812FreshwaterMSKFFSLAALVVGGIIVADILTHPAGTAAASKGISGITTPAISGLLGK*
Ga0007879_102044413300003813FreshwaterLKDQPMSRFFSLAALVVGGIIVADILTHPAGTAAATKGIAGVTNPAIQGLLGK*
Ga0031655_1014244823300003852Freshwater Lake SedimentMSKFFSLAALIVGGIIVADVLTHPQGTAAASSGINTLWKSSVNGLLGKTA*
Ga0065170_100097673300004694FreshwaterMSKFFSLAALVVGGIIVADVLTHPAGTAAASKGIAGITTPAIHGLLGK*
Ga0007809_1001802753300004807FreshwaterMSKFFSLATLVVGGIIVADILTHPQGTAAAAKGVSGITGPAIQGLLGK*
Ga0070735_1040041533300005534Surface SoilVSKFWSLAALVVGGIIVADILIHPAGTQAAANGAASIITPSEHALLGSTN*
Ga0007876_100183443300006071FreshwaterMSKFFSLAALVVGGIIVADILTHPSGTAAASKGLAGITTPAINGLLCK*
Ga0007806_107667313300006100FreshwaterFSLAALVVGGIIVADILTHPSGTAAASKGLAGITTPAINGLLGK*
Ga0007882_10004763143300006104FreshwaterMSGLFSLAALVVGGIIVADILSHPAGTAAASKGITGLITTSKNGLLGK*
Ga0007833_109977113300006106FreshwaterGGIIVADILTHPQGTAAAAKGVSGITGPAIQGLLGK*
Ga0116222_101339033300009521Peatlands SoilMGSQIFSLAALVVGGIIVADILIHPTGTQAAANGLAQITTPAESALLGGGK*
Ga0116221_125054433300009523Peatlands SoilAALVVGGIIVADILIHPTGTQAAANGLASITTPAESSLLGGGR*
Ga0116219_1042890123300009824Peatlands SoilMGSQIFRLAALVVGGIIVADILIHPAGTQAATQGLAMITTPAESALLGGGK*
Ga0116219_1060156133300009824Peatlands SoilMGSQIFSLAALVVGGIIVADILIHPTGTQAAANGLASITTPAESSLLGGGR*
Ga0116223_1065654813300009839Peatlands SoilMGSQIFSLAALVVGGIIVADILIHPTGTQAAANGLAQITTPAESSLLGGGR*
Ga0114960_1060414313300010158Freshwater LakeVRPNMSKFFSLAALIVGGIIVADVLTHPQGTAAASSGINTLWKSSVNGLLGKTA*
Ga0134128_1301343313300010373Terrestrial SoilMSKFWSLAALVVGGIIIADILTHPNGTAAASNGIVAINKVNANALLGQPS*
Ga0136449_100051246123300010379Peatlands SoilMGSQIFSLAALVVGGIIVADILIHPAGTQAATQGLAMITTPAESALLGGGK*
Ga0136449_100069712133300010379Peatlands SoilMSKLFSVVALVIGGLIVADVLIHPAGTAAASHGIAGITGPAITGLLGK*
Ga0136449_10032283753300010379Peatlands SoilVGSKIFSLAALVVGGIILADILIHPAGTQAAANGLASITTPAESSLLGGGR*
Ga0136449_10201045743300010379Peatlands SoilMGSQIFSLAALVVGGIILADILVHPSGTQAAANGLAQITTPAEASLLGGNRPGGG*
Ga0136449_10296650823300010379Peatlands SoilMGSQIFSLAALVVGGIILADILIHPAGTQAAANGLAQITTPAESSLLGGGR*
Ga0136449_10307018113300010379Peatlands SoilMGSQIFSLAALVVGGIIVADILIHPAGTQAAANGLASLTTPAESSLLGGGR*
Ga0164297_1001503493300013094FreshwaterMSKFFSLAALVVGGIIVADILTHPAGTAAATKGIAGVTNPAIQGLLGK*
Ga0164297_1001995473300013094FreshwaterMSKFFSLAALVVGGIIVADILTHPSGTAAASKGLSGITTPAINGLLGK*
Ga0181534_1005833333300014168BogMAKFFSLAALVVGGIIVADIIIHPTGTAAAATGIQGISTPAFNALLGTPTSVKAG*
Ga0181534_1006281843300014168BogMGSSIFSLAALVVSGIIVADILTHPSGTQAATNGLASITTPAESSLLGGTNTGGK*
Ga0181526_1040059743300014200BogMGSQIFSLAALVVGGIIVADILIHPAGTQAATNGLASITTPSTNALLGSTTS*
Ga0182013_1009078753300014492BogMMGSQFFSLAALVVGGIVVADILIHPTGTQAAANGLASITTPAESSLLGTAPK*
Ga0182013_1041862523300014492BogMAKFFSFAALVVGGIIVADIIIHPTGTAAAASGIQGISTPAFNALLGTPTSVKAG*
Ga0182016_10002794123300014493BogMGSQIFSLAALVVGGIIVADILIHPAGTQAATNGLASIATPAESSLLGGGK*
Ga0182016_1036652623300014493BogMGSQIFSLAALVVGGIIVADILTHPGGTQAAANGLASITTPAESSLLGGSNTGGK*
Ga0181519_1005464733300014658BogMGSQIFSLAALVVGGIIVADFLTHPSGTTAAANGLAAITTPAESSLLGGANTGGG*
Ga0182030_1006395973300014838BogMFSGFLSLAALVVGGIIVADILTHPSGTAAASSGINTLVSGAEQGLLGK*
Ga0182030_1020817943300014838BogMFSGFLSLAALVVGGIIVADILTHPSGTAAASSGINGLVTPAIAGLLGSTGGKQA*
Ga0182030_1023620733300014838BogMGSQIFSLAALVVGGIIVADFLTHPSGTTAAANGLASITTPAESSLLGGANTGGG*
Ga0187803_1007803363300017934Freshwater SedimentMSSAIFSLAALVVGGIIVADILTHPSGTQAAANGLASITTPAESSLLGGANKGGG
Ga0214180_102890533300021130FreshwaterMSKFFSLAALVVGGIIVADILTHPTGTAAASSGINTLVGSSISGLLGVAPASSS
Ga0210392_1138546413300021475SoilMGSQVFSLAALVVGGIIVADFLIHPAGTTAAANGLASITTPAESSLLGGGSAFGSGGQ
Ga0213854_101737023300021855WatershedsMSGFFSLAALVVGGVILADILIHPAGTAAASSGINSLVGSSINGLLGTTNKK
Ga0208871_1000293273300025381FreshwaterMSKFFSLAALVVGGIIVADILTHPSGTAAASKGLAGITTPAINGLLGK
Ga0208256_1000151253300025382FreshwaterMSKFFSLAALVVGGIIVADILTHPAGTAAASKGISGITTPAISGLLGK
Ga0208256_103011013300025382FreshwaterMSKFFSLAALVVGGIIVADVLTHPAGTAAASKGIAGITTPAIHGLLGK
Ga0208109_105576523300025395FreshwaterAALVVGGIIVADILTHPVGTAAASKGVAGITNPAIQGLLGK
Ga0208874_104708523300025396FreshwaterQNPYHFKGVTMSKFFSLAALVVGGIIVADILTHPSGTAAASKGLAGITTPAINGLLGK
Ga0208379_101415163300025598FreshwaterMSKFFSLATLVVGGIIVADILTHPQGTAAAAKGVSGITGPAIQGLLGK
Ga0208507_108250723300025648FreshwaterMSGLFSLAALVVGGIIVADILSHPAGTAAASKGITGLITTSKNGLLGK
Ga0207933_117172323300025679Arctic Peat SoilMGSQIFSLAALVVGGIIVADILIHPQGTQAATTGLANITTPAQNALLGQAG
Ga0207761_102188933300027516Tropical Forest SoilVSRFWSLAALVVGGIMLADILTHPRGTQAAANGVASIVTPTESALLGGTSTGGQ
Ga0208044_108843923300027625Peatlands SoilMGSQIFSLAALVVGGIIVADILIHPTGTQAAANGLAQITTPAESALLGGGK
Ga0208827_114808033300027641Peatlands SoilMGSQIFSLAALVVGGIIVADILIHPTGTQAAANGLASITTPAESSLLGGGR
Ga0208565_104849433300027662Peatlands SoilMGSQIFSLAALVVGGIIVADILIHPTGTQAAANGLASLTTPAESALLGGGK
Ga0209530_120334323300027692Forest SoilMGSQIFSLAALVVGGIIVADFLTHPSGTTAAANGLASITTPAESSLLGGGNTGGG
Ga0209517_1009057263300027854Peatlands SoilFSLAALVVGGIIVADILIHPTGTQAAANGLASLTTPAESALLGGGK
Ga0209517_1061580813300027854Peatlands SoilMGSQIFSLAALVVGGIIVADILIHPTGTQAAANGLASLTTPAESALLGG
Ga0209777_1006520043300027896Freshwater Lake SedimentMSKFFSLAALIVGGIIVADVLTHPQGTAAASSGINTLWKSSVNGLLGKTA
Ga0209168_1056829623300027986Surface SoilVSKFWSLAALVVGGIIVADILIHPAGTQAAANGAASIITPSEHALLGSTN
Ga0311372_1145606343300030520PalsaMAKFFSLAALVVGGIIVADIITHGSQTALAAQGVASIEQPAINGLLGVGA
Ga0302326_1120967723300031525PalsaMGSQIFSLAALVVGGIIVADFLIHPAGTTAAANGLSSITTPAESSLLGTAP
Ga0318516_1032139033300031543SoilVSRFWSLAALVVGGIMLADILTHPRGTQAAANGLASIVTPTESALLGGNTVGGK
Ga0318516_1072389413300031543SoilVSRFWSLAALIVGGIMLADILTHPRGTQAAANGLASIVTPTESALLGGNTVGGK
Ga0318541_1059192623300031545SoilDNVSRFWSLAALIVGGIMLADILTHPRGTQAAANGLASIVTPTESALLGGNTVGGK
Ga0318573_1035674533300031564SoilVSRFWSLAALVVGGIMLADILTHPRGTQAAANGLASIVTPTESALLGGNTVG
Ga0310915_1068577033300031573SoilVSRFWSLAALVVGGIMLADILTHPRGTQAAANGLASIVTPTESALLGGNTV
Ga0318542_1002796313300031668SoilLAALIVGGIMLADILTHPRGTQAAANGLASIVTPTESALLGGNTVGGK
Ga0318542_1065491323300031668SoilVSRFWSLAALIVGGIMLADILTHPRGTQAAANGLASIVTPTESALLGGN
Ga0307375_10002443243300031669SoilMSKFFSLLALGVGGIIVADILIHPAGTTAATKGITSFTRVGVNGLLGMPS
Ga0307374_1010954633300031670SoilVSKFFSLAALVVGGIILADVVTHGAGVKAAATGTSKLTTPAINGLLGKTS
Ga0307374_1014286963300031670SoilMGSKIFSLAALVVGGIIVADILIHPAGTTAASKGFNSLASTSVNGLLGK
Ga0307374_1064678923300031670SoilMGSKIFSLAALVVGGIIIADILIHPTGTTAASKGVAGITGPAINGLLGK
Ga0318574_1044163413300031680SoilVSRFWSLAALVVGGIMLADILTHPRGTQAAANGLASIVTPTESA
Ga0318494_1057759733300031751SoilMSRFWSLAALVVGGLIVGDILLHPQGTQAAANGLASIVTPTEGALLG
Ga0316219_113230823300031759FreshwaterMSRFFSLAALVVGGIIVADILTHPAGTAAATKGIAGVTNPAIQGLLGK
Ga0318537_1009046313300031763SoilWSLAALIVGGIMLADILTHPRGTQAAANGLASIVTPTESALLGGNTVGGK
Ga0318554_1002742883300031765SoilMARFWSLAALVVGGLIVADILTHPSGTQQAANGLASIVTPTEAALIGGNQP
Ga0318552_1043801423300031782SoilMARFWSLTALVVGGLIVADILTHPSGTQQAANGLASIVTPTEAALIGGNQPGGR
Ga0318497_1010538323300031805SoilMARFWSLAALVVGGLIVGDILLHPQGTQAAANGLASIVTPTEGALLGKAP
Ga0318568_10011320113300031819SoilVSRFWSLAALVVGGIMLADILTHPRGTQAAANGLASIVTPTESALLGGNTAGGK
Ga0307478_1015803233300031823Hardwood Forest SoilMAARFFALAGTVVAGLIVADILLHPAGTAAASKGLSGIETPVVHGLLGSTA
Ga0306919_1073881733300031879SoilVSRFWSLAALVVGGIMLADILTHPRGTQAAANGLASIVTPTESALLGGN
Ga0318544_1038029723300031880SoilMARFWSLAALVVGGLIVADILTHPSGTQQAANGLASIVTPTEAALIGGNQPGGR
Ga0306925_1069208613300031890SoilMARFWSLAALVVGGLIVADILTHPSGTQQAANGLASIVTPTEAALI
Ga0318551_1002219873300031896SoilVSRFWSLAALIVGGIMLADILTHPRGTQAAANGLASIVTPTESALLGGNTAGGK
Ga0306923_1033149963300031910SoilMSRFWSLAALVVGGLIVGDILLHPQGTQAAANGLASIVTPTEGALLGKAP
Ga0310912_1112969723300031941SoilMSRFWSFAALVVGGLIVADILTHVQGTQAAANGLAKIVTPTEASLTGGGHYN
Ga0318569_1045497913300032010SoilMARFWSLAALVVGGLIVADILTHPSGTQQAANGLASIVTPTEAA
Ga0318570_1051423513300032054SoilGAIGGNNVSRFWSLAALVVGGIMLADILTHPRGTQAAANGLASIVTPTESALLGGNTVGG
Ga0318513_1019130743300032065SoilVSRFWSLAALIVGGIMLADILTHPRGTQAAANGLASIVTPTESALL
Ga0306924_1095223913300032076SoilMSRFWSFAALVVGGLIVADILTHVQGTQAAANGLAKIVTPTEA
Ga0306924_1207688113300032076SoilMSRFWSLAALVVGGLIVGDILLHPQGTQAAANGLASIVTPTEG
Ga0316218_113332633300032117FreshwaterMSKFFSLAALVVGGIIVADILTHPSGTAAASKGLSGITTPAINGLLGK
Ga0311301_1026804633300032160Peatlands SoilMGSQIFSLAALVVGGIIVADILIHPAGTQAATQGLAMITTPAESALLGGGK
Ga0311301_1032179573300032160Peatlands SoilMSKLFSVVALVIGGLIVADVLIHPAGTAAASHGIAGITGPAITGLLGK
Ga0311301_1160758243300032160Peatlands SoilVGSKIFSLAALVVGGIILADILIHPAGTQAAANGLASITTPAESSLLGGGR
Ga0311301_1213006823300032160Peatlands SoilMGSQIFSLAALVVGGIILADILIHPAGTQAAANGLAQITTPAESSLLGGGR
Ga0311301_1214462313300032160Peatlands SoilMGSQIFSLAALVVGGIIVADILIHPAGTQAAANGLASLTTPAESSLLGGGR
Ga0306920_10070225353300032261SoilVSRFWSLAALIVGGIMLADILTHPRGTHAAANGLASIVTPTESALLGGNTVGGK
Ga0316226_130016623300032562FreshwaterMSKIFSLAALVVGGIIVADILTHPAGTTAASNGINKLASTSVSGLLGK
Ga0316221_104894243300032665FreshwaterMSKFFSLAALVVGGIIVADILTHPAGTAAATKGIAGVTNPAIQGLLGK
Ga0335074_1078182723300032895SoilMRVSGFWSLAGLVVVGIIIADAFTHPPGVSAAAKGVTSIVTPSESALLGGSNTGGK
Ga0334804_014981_339_4883300033818SoilMFSGLLSLAALVVGGFVVADILTHPSGTAAASSGINTLVSGAEQGLLGK
Ga0334840_133449_280_4293300033824SoilMFSGFLSLAALVVGGIIVADILTHPSGTAAASSGINTLVSGAEQGLLGK


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