Metagenome / Metatranscriptome Family F093083

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093083
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	65 residues
Representative Sequence	MRNICRAYQDGSVRFGTAGEVFASRDVFNGRAIFAEHFELVSVVAVEMVIERFSADGASYPL
Number of Associated Samples	85
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.45 %
% of genes near scaffold ends (potentially truncated)	91.51 %
% of genes from short scaffolds (< 2000 bps)	86.79 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (56.604 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog (44.340 % of family members)
Environment Ontology (ENVO)	Unclassified (50.943 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.057 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108. 1Ga0116111_10726181 2Ga0116135_11186542 3Ga0181527_11643472 4Ga0181517_103493011 5Ga0182014_105372971 6Ga0182013_100336301 7Ga0182013_100752966 8Ga0182017_109223591 9Ga0182030_107155211 10Ga0187847_101198201 11Ga0181520_100089181 12Ga0181520_100232151 13Ga0187868_11958851 14Ga0187887_103251771 15Ga0187890_102762281 16Ga0187851_104448251 17Ga0187859_106007851 18Ga0187858_108120731 19Ga0181508_15813351 20Ga0182031_13696231 21Ga0224526_10222161 22Ga0224526_10397901 23Ga0224554_10873462 24Ga0224554_11407921 25Ga0224555_10942251 26Ga0224557_11750381 27Ga0224535_10738561 28Ga0224556_10671022 29Ga0255351_10645491 30Ga0255350_10264851 31Ga0255350_10454261 32Ga0255350_10735041 33Ga0255350_11054791 34Ga0255356_10269923 35Ga0255356_10386921 36Ga0255348_10364982 37Ga0255348_10388872 38Ga0255348_10913881 39Ga0302144_100495301 40Ga0302144_102054271 41Ga0302153_101344812 42Ga0302267_100929911 43Ga0302156_102047602 44Ga0302224_102042582 45Ga0302202_101175173 46Ga0302269_10375451 47Ga0302269_10968392 48Ga0302266_100168023 49Ga0302201_101932661 50Ga0302189_100145301 51Ga0302227_100846351 52Ga0302157_101639351 53Ga0302157_104704931 54Ga0302268_10372861 55Ga0302268_10698651 56Ga0302265_11104802 57Ga0302199_10052235 58Ga0302218_103233991 59Ga0302278_100988381 60Ga0302146_103783571 61Ga0302154_101407492 62Ga0311341_102750412 63Ga0311361_105265852 64Ga0311361_109911621 65Ga0311362_108168042 66Ga0311359_110716321 67Ga0311326_101933961 68Ga0302143_10299851 69Ga0311328_101433342 70Ga0311328_106147232 71Ga0311340_106076151 72Ga0311340_107723271 73Ga0311330_107853652 74Ga0302277_10782671 75Ga0302280_10638092 76Ga0302188_100545182 77Ga0302188_103389221 78Ga0302276_100129211 79Ga0302283_12269702 80Ga0311338_111726331 81Ga0311344_106412801 82Ga0302281_100642642 83Ga0302196_101909632 84Ga0311360_106358791 85Ga0311370_107057152 86Ga0302194_100085996 87Ga0302194_100157401 88Ga0302192_101584042 89Ga0302193_106043531 90Ga0302309_101888232 91Ga0302312_102156231 92Ga0302308_104467472 93Ga0265760_103794652 94Ga0302323_1011915921 95Ga0302318_107177961 96Ga0302318_107223691 97Ga0302187_105665001 98Ga0302320_122600711 99Ga0302319_109682222 100Ga0302319_116270911 101Ga0302315_100988523 102Ga0302322_1030773311 103Ga0326728_104441713 104Ga0326727_105245001 105Ga0334828_127358_441_602 106Ga0334840_083309_2_172
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108. 1Ga0116111_10726181 2Ga0181527_11643472 3Ga0182014_105372971 4Ga0182013_100752966 5Ga0187858_108120731 6Ga0224554_11407921 7Ga0302224_102042582 8Ga0302218_103233991 9Ga0302319_109682222
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108. 1Ga0116111_10726181 2Ga0181527_11643472 3Ga0182014_105372971 4Ga0182013_100752966 5Ga0187858_108120731 6Ga0224554_11407921 7Ga0302224_102042582 8Ga0302218_103233991 9Ga0302319_109682222
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 56.45% Coil/Unstructured: 43.55%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00005	ABC_tran	13.21
PF13424	TPR_12	8.49
PF04079	SMC_ScpB	2.83
PF00664	ABC_membrane	1.89
PF01988	VIT1	0.94
PF13432	TPR_16	0.94
PF11695	DUF3291	0.94
PF13358	DDE_3	0.94

Showing 1 to 8 of 8 entries

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COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1386	Chromosome segregation and condensation protein ScpB	Transcription [K]	2.83
COG1633	Rubrerythrin, includes spore coat protein YhjR	Inorganic ion transport and metabolism [P]	0.94
COG1814	Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family	Inorganic ion transport and metabolism [P]	0.94

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.60 %
Unclassified	root	N/A	43.40 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.60 %
Unclassified	root	N/A	43.40 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.60 %
Unclassified	root	N/A	43.40 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	45.28 %
Unclassified	root	N/A	43.40 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	31.13 %
Unclassified	root	N/A	43.40 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	7.55 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.55 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	31.13 %
Unclassified	root	N/A	43.40 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.55 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	31.13 %
Unclassified	root	N/A	43.40 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.55 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.94 %
Candidatus Sulfotelmatomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas	1.89 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1.89 %
Unclassified	root	N/A	43.40 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.55 %
Candidatus Sulfotelmatomonas gaucii	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	1.89 %
Edaphobacter modestus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter modestus	1.89 %
Unclassified	root	N/A	43.40 %
unclassified Acidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.55 %
Acidobacterium sp. S8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp. S8	0.94 %
Candidatus Sulfotelmatomonas gaucii	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	1.89 %
Edaphobacter modestus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter modestus	1.89 %
Unclassified	root	N/A	43.40 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300009616\|Ga0116111_1072618	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	926	Open in IMG/M
3300009665\|Ga0116135_1118654	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	969	Open in IMG/M
3300014153\|Ga0181527_1164347	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300014160\|Ga0181517_10349301	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300014491\|Ga0182014_10537297	Not Available	570	Open in IMG/M
3300014492\|Ga0182013_10033630	All Organisms → cellular organisms → Bacteria	4229	Open in IMG/M
3300014492\|Ga0182013_10075296	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2393	Open in IMG/M
3300014494\|Ga0182017_10922359	Not Available	525	Open in IMG/M
3300014838\|Ga0182030_10715521	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300017948\|Ga0187847_10119820	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1443	Open in IMG/M

Showing 1 to 10 of 102 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	13.21%
Terrestrial	Environmental → Terrestrial	86.79%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	13.21%
Peat	Environmental → Terrestrial → Peat	80.19%
Soil	Environmental → Terrestrial → Soil	6.60%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	80.19%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	0.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	13.21%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.66%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	11.32%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.66%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	80.19%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.89%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	44.34%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	4.72%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.77%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	4.72%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.94%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	10.38%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.89%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	7.55%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.89%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	18.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300009616	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014160	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M

Showing 1 to 10 of 85 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0116111_10726181	3300009616	Peatland	MRNICRAYQDGSVRFDTAGEVFASRDLFNGRAIFAEHFELVSVVAVEMVIERFSADGASYPLRPVLTPEHDCVTT
Ga0116135_11186542	3300009665	Peatland	MRKICCAYQDGSVRFETAREVFASRDAFNRRAIFAEHFELVYVVAVEMVIERFSADGASYPLRPVLTPE
Ga0181527_11643472	3300014153	Bog	MRNISRAYQDGSVRFNTAGEVFASCDVFNGWAIFSEHFQLVSVIAVEMVIERLPADSASNTLRPVLTPEHDYVTTGVMPFFR
Ga0181517_103493011	3300014160	Bog	MRNISRAYEDGSVRFNTAGEVFASCDVFNGWAIFSEHFQLVSVIAVEMVIERLPADSASNTLRPVLTPEHD
Ga0182014_105372971	3300014491	Bog	MSNICRAYQDGSIRFNTAGEVFASRDLFNGRAIFAEHFELVSVVAVEMVIERFSADGAS*
Ga0182013_100336301	3300014492	Bog	MMNILRAYQDGSVRFDMVGEVFASRDVFNGRSIFAEHFELVSVVAVEMVIERFSADGASYPLRPVLTPEHDC
Ga0182013_100752966	3300014492	Bog	MRNICGEFQDGSVRFHTAGEVFASGDVFNGNGRAIFAEHFEFVFVVAVEIRIEQLRC*
Ga0182017_109223591	3300014494	Fen	MRNICRAYQYGSVRFDTAGEVFASRDLFNGRAIFAEHFELVSVVAVEMVIERFSADSASYPLRPVLTPEHDYVATGVMPF
Ga0182030_107155211	3300014838	Bog	MRKICRAYQDGSVRFNTAGEVFASCDVFNGRAIFAKHFELVSVVAVEMVIERFSADSASYPLRPVLTPEHD
Ga0187847_101198201	3300017948	Peatland	MRNICRAYQDGSVRFGTAGEVFASRDVFNGRAIFAEHFELVSVVAVEMVIE
Ga0181520_100089181	3300017988	Bog	MRNISRAYQDGSVRFNTAGEVFASCDVFNGRAIFLEHFELVSVIAVEMVIERLPADSASNTLRPVLTPEHDYVTTGVMPFFR
Ga0181520_100232151	3300017988	Bog	MRNISRAYEDGSVRFNTAGEVFASCDVFNGWAIFSEHFQLVSVIAVEMVIERLPADSASNTLRPVLTPEHDYVTTGVMPFFR
Ga0187868_11958851	3300018002	Peatland	MRNICRAYQDGSVRFDMVGEVFASRDAFNGRAIFAEHFELVSVVAVEMVIERFSADSASYPLRPVLTPEHDYVATAVMPFFRSRE
Ga0187887_103251771	3300018043	Peatland	MRNICRAYQYGSVRFDTAGEVFASRDLFNGRAIFAEHFELVFVVAVEMVIERFSADSASY
Ga0187890_102762281	3300018044	Peatland	MRKICCAYQDGSVRFETAREVFASRDVFNGRAIFAEHFEHVFVVAVEMVIERFSADSASYPLRPVLTPEHD
Ga0187851_104448251	3300018046	Peatland	MRNICRAYQVGSVRFDMVGEVFASRHLFNGRVIFAEHFELVSVVAVEMVIERFSDDGASYPLRPVLTPEHDCVTTGVMPFFRSREDQ
Ga0187859_106007851	3300018047	Peatland	MRNICRAYQDGSVRFDAAGEVFASRDVFNGRAIFAEHFEFVSVVAVEMVIERFSADGAS
Ga0187858_108120731	3300018057	Peatland	MRNICRAYQYGSVRFDTAGEVFASRDLFNGRAIFAEHFELVFVVAVEM
Ga0181508_15813351	3300019256	Peatland	MRNICRAYQDGSVRFDMVGEVFASRDAFNGRAIFAEHFELVSVVAVEMVIERFSADCASYPLRP
Ga0182031_13696231	3300019787	Bog	MSNICRAYQDGSIRFNTAGEVFASRDLFNGRAIFAEHFELVSVVAVEMVIERFSADGAS
Ga0224526_10222161	3300022872	Soil	MRNICRAYQDGSVRFDTAGEVFASRDLFNGRAIFAEHFELVFVVAVEMVIERFSADSASYPLRPVLTPE
Ga0224526_10397901	3300022872	Soil	MRNICRAYQDGSVRFGTAGEVFASRDVFNGRAIFAEHFELVSVVAVEMVIERFSADGASYPLRPVLT
Ga0224554_10873462	3300023068	Soil	MRNISRAYQDGSVRFDTAGEVFASRDVFNGRAIFAEYFELVSVVAVEMVIERFSADSASYPLRPVLTPEHDYVTTG
Ga0224554_11407921	3300023068	Soil	HDLHHLQLRCVSSIGNICRAYQDGSVRFDMVGEVFASRDAFNGRAIFAEHFELVSVVAVEMVIERFSADGAS
Ga0224555_10942251	3300023088	Soil	MRNICGAYQDGSVRFDTAGEVFASRDVFNGRAIFAEHFELVYVVAVEMVIERFS
Ga0224557_11750381	3300023101	Soil	MRNICRAYQDGSVRFDTAGEVFASRDLFNGRVAFAEHFELVSVVAVEM
Ga0224535_10738561	3300023258	Soil	ICRAYQDGSVRFDMVGEVFASRDAFNGRAIFAEHFELVSVVAVEMVIERFSADGAS
Ga0224556_10671022	3300024295	Soil	QLRCVSSIGNICRAYQDGSVRFDMVGEVFASRDAFNGRAIFAEHFELVSVVAVEMVIERFSADGAS
Ga0255351_10645491	3300026456	Soil	MRNICGAYQDGSVRFDTAGEVFTSRDLFNGRAIFAEHFELVSVVAVEMVIERFSADGASNPLRPVLTPEHDCVTTG
Ga0255350_10264851	3300026502	Soil	MRNICRAYQDGSVRFGTAGEVFASRDVFNGRAIFAEHFELVSVVAVEMVIERFSADGAS
Ga0255350_10454261	3300026502	Soil	MRNICRAYQDGSVRFDTAGEVFASRDLFNGRAIFAEHFELVFVVAVEMVIERFSADSASYPLRPVLTPEHDYVATGVMPFFRSREDQF
Ga0255350_10735041	3300026502	Soil	MRNICRAYQYGSVRFDMVGEVFASRDLFNGRAIFAEHIELVSVVAVEMVIERFSADGASYPLRPVLTPEHDCVTTGVM
Ga0255350_11054791	3300026502	Soil	MNILRAYQDGSVRFDMVGEVFASRDVFNGRSIFAEHFELVFVVAVEMVIERFSADSA
Ga0255356_10269923	3300028084	Soil	MRNICRAYQDGSVRFDMVGEVFASRHLFNGRVIFAEHFELVSVVAVEMV
Ga0255356_10386921	3300028084	Soil	MRNICRAYQYGSVRFDTAGEVFASRDLFNGRAIFAEHFELVSVVAVEMVIERFSADGASYPLRPVLT
Ga0255348_10364982	3300028268	Soil	MRNICRAYQDGSVRFDTAGEVFASRDLFNGRAIFAEHFELVFVVAVEMVIERFSADSASYPLRPVLTPEHDYVATGVIPFFRSRED
Ga0255348_10388872	3300028268	Soil	MRNICRAYQDGSVRFGTAGEVFASRDVFNGRAIFAEHFELVFVVAVEMVIERFSADGASYPLRPVLTPEHD
Ga0255348_10913881	3300028268	Soil	MRNICRAYQYGSVRFDTAGEVFASRDLFNGRAIFAEHFELVSVVAVEMVIERFSA
Ga0302144_100495301	3300028560	Bog	MRNICRAYQDGSVRFDMVGEVFASRHLFNGRVIFAEHFELVFVVAVEMVIERFSADSASYPLRPVLTPEHDYV
Ga0302144_102054271	3300028560	Bog	MRNICRAYQDGSVRFGTAGEVFASRDVFNGRAIFAEHFELVFVVAVEMVIERFSADGASYPLRPVLTPEHDCVTTGVMPFFRCREDQF
Ga0302153_101344812	3300028574	Bog	MRNICRAYQDGSVRFGTAGEVFASRDVFNGRAIFAEHFELVFVVAVEMVIERFSADGAS
Ga0302267_100929911	3300028745	Bog	MRNICRAYQDGSVRFGTAGEVFASRDVFNGRAIFAEHFELVFVVAVEMVI
Ga0302156_102047602	3300028748	Bog	MRNICRAYQDGSVRFGTAGEVFASRDVFNGRAIFAEHFELVSVVAVEMVIERFSADGASYPLRPVL
Ga0302224_102042582	3300028759	Palsa	MRNICRAYQDGSVRFDTAGEIFASCDVFNGRAMVAKHFEFIPLVAVEMVIERLSAYGA
Ga0302202_101175173	3300028762	Bog	MRNICRAYQYGSVRFDTAGEVFASRDLFNGRAIFAEHFELVFVVAVEMV
Ga0302269_10375451	3300028766	Bog	MRNICRAYQDGSVRFGTAGEVFASRDVFNGRAIFAEHFELVSVVAVEMVIERFSADGASY
Ga0302269_10968392	3300028766	Bog	IGNICRAYQDGSVRFDMVGEVFASRDAFNGRAIFAEHFELVSVVAVEMVIERFSADGAS
Ga0302266_100168023	3300028779	Bog	MMNILRAYQDGSVRFDMVGEVFASRDVFNGRSIFAEHFELVSVVAVEMVIERFSA
Ga0302201_101932661	3300028785	Bog	MRNICRAYQYGSVRFDTAGEVFASRDLFNGRAIFAEHFELVSVVAVEMVIERFSADGASYPLRPVLTPE
Ga0302189_100145301	3300028788	Bog	MMNILRAYQDGSVRFDMVGEVFASRDVFNGRSIFAEHFELVSVVAVEMVIERFSADGASYPLRPVL
Ga0302227_100846351	3300028795	Palsa	MRNICRAYQDGSVRFDTAGEIFASCDVFNGRAMVAKHFEFIPLVAVEMVIE
Ga0302157_101639351	3300028813	Bog	MRNICRAYQDGSIRFDTAGEVFASRDLFNGRAIFAEHFELVSVVAVEMVIERFS
Ga0302157_104704931	3300028813	Bog	MRNICGAYQDGSVRFDTAGEVFTSRDLFNGRAIFAEHFELVSVVAVEMVIERFSADGA
Ga0302268_10372861	3300028854	Bog	MRNICRAYQDGSVRFGTAGEVFASRDVFNGRAIFAEHFELVFVVAVEMVIERFSAD
Ga0302268_10698651	3300028854	Bog	MRNICRAYQDGSVRFDTAGEVFASRDLFNGRAIFAEHFELVFVVAVEMVIERFSADSASYPLRPVLTPEHD
Ga0302265_11104802	3300028859	Bog	MRNICRAYQDGSVRFDTAGEVFASRDLFNGRAIFAEHFELVFVVAVEMVIERFS
Ga0302199_10052235	3300028860	Bog	MMNILRAYQDGSVRFDMVGEVFASRDVFNGRSIFAEHFELVSVVAVEMVIERFSADGASYPLRP
Ga0302218_103233991	3300028863	Palsa	MRNICRAYQDGSVRFDTAGEIFASCDVFNGRAMVAKHFEFIPLVAVEMVIERLSAYGASYPLGPVLTPEHDYALTGVIPFFW
Ga0302278_100988381	3300028866	Bog	MRNICRAYQDGSVRFGTAGEVFASRDVFNGRAIFAEHFELVSVVAVEMVIERFSADGASYPLRPVLTP
Ga0302146_103783571	3300028867	Bog	MRNICRAYQDGSVRFDTAGEVFASRDLFNGRVAFAEHFELVSVVAVEMVIERFSADGASY
Ga0302154_101407492	3300028882	Bog	MRNICRAYQDGSVRFGTAGEVFASRDVFNGRAIFAEHFELVSVVAVEMV
Ga0311341_102750412	3300029908	Bog	MNILRAYQDGSVRFDMVGEVFASRDVFNGRSIFAEHFELVSVVAVEMVIERFSADGASYPLRPVLTP
Ga0311361_105265852	3300029911	Bog	MRNICRAYQDGSVRFGTAGEVFASRDVFNGRAIFAEHFELVSVVAVEMVIERFSADGASYPLRPVLTPEHDCVTT
Ga0311361_109911621	3300029911	Bog	QQRCVSLMSNICRAYQDDSIRFNTAGEVFASRDLFNGRAIFAKHFELVSVVAVEMVIERFSADGAS
Ga0311362_108168042	3300029913	Bog	MRNICRAYQDGSIRFDTAGEVFASRDLFNGRAIFAEHFELVSVVAVEM
Ga0311359_110716321	3300029914	Bog	MRKICCAYQDGSVRFETAREVFASRDVFNGRAIFAEHFEHVFVVAVEMVIERFSADSASYPLRP
Ga0311326_101933961	3300029917	Bog	MNILRAYQDGSVRFDMVGEVFASRDVFNGRSIFAEHFELVSVVAVEMVIERFSADGASYPLRPVLTPE
Ga0302143_10299851	3300029918	Bog	MRNICRAYQDGSVRFGTAGEVFASRDVFNGRAIFAEHFELVSVVAVEMVIERFSADGASYPLRPVLTPEHDCVT
Ga0311328_101433342	3300029939	Bog	MMNILRAYQDGSVRFDMVGEVFASRDVFNGRSIFAEHFELVSVVAVEMVIERFSADCASYPLRPVLT
Ga0311328_106147232	3300029939	Bog	MRNICRAYQDGSIRFDTAGEVFASRDLFNGRAIFAEHFELVSVVAVEMVIERFSADGASY
Ga0311340_106076151	3300029943	Palsa	MSNICRAYQDDSIRFNTAGEVFASRDLFNGRAIFAKHFELVSVVAVEMVIERFSADGAS
Ga0311340_107723271	3300029943	Palsa	MRNICRAYQYGSVRFDTAGEVFASRDAFNGRAIFAEHFELVSVVAVEMVIERFSADSA
Ga0311330_107853652	3300029945	Bog	MRNICRAYQDGSIRFDTAGEVFASRDLFNVRAIFAEHFELVSVVAVEMVIERFSADG
Ga0302277_10782671	3300029982	Bog	MRNICRAYQDGSVRFGTAGEVFASRDVFNGRAIFAEHFELVFVVAVEMVIERFSADGA
Ga0302280_10638092	3300029985	Fen	MRNICRAYQDGSVRFGTAGEVFASRDVFNGRAIFAEHFELVSVVAVEMVIERFSADGASYPL
Ga0302188_100545182	3300029986	Bog	MMNILRAYQDGSVRFDMVGEVFASRDVFNGRSIFAEHFELVSVVAVEMVIERFSADGASY
Ga0302188_103389221	3300029986	Bog	MRNICRAYQDGSVRFETAGEVFASRDVFNGRAIFAEHFEHVFVVAVEMVIERFSADSASY
Ga0302276_100129211	3300029992	Bog	MMNILRAYQDGSVRFDMVGEVFASRDVFNGRSIFAEHFELVSVVAVEMVIERFSADGASYPL
Ga0302283_12269702	3300029994	Fen	MRNICGAYQDGSVRFDTAGEVFTSRDLFNGRAIFAEHFELVSVVAVEMVIERFSADGASN
Ga0311338_111726331	3300030007	Palsa	MSNICRAYQDDSIRFNTAGEVFASRDLFNGRAIFAEHFELVSVVAVEMVIER
Ga0311344_106412801	3300030020	Bog	MRNICRAYQYGSVRFDTAGEVFASRDLFNGRAIFAEHFELVSVVAVEMVIERFSADGASYPLRPVLTP
Ga0302281_100642642	3300030044	Fen	MMNILRAYQDGSVRFDMVGEVFASRDVFNGRSIFAEHFELVSVVAVEMVIERFSADGASYPLRPVLT
Ga0302196_101909632	3300030225	Bog	MRNICRAYQDGSVRFGTAGEVFASRDVFNGRAIFAEHFELVFVVAVEMVIERFSADGASYPLRPVLTPEHDCVTTGV
Ga0311360_106358791	3300030339	Bog	MRNICRAYQDGSVRFDTAGEVFASRDVFNGRVIFAEHFELVSVVAVEMVIERFPAESASYPLRPVLTPEHDSVTTGVIAFFR
Ga0311370_107057152	3300030503	Palsa	MRNICRAYQDGSVRFDTAGEVFASRDLFNGRVIFAEHFELVFVVAVEMVIERFCADSASY
Ga0302194_100085996	3300030506	Bog	MMNILRAYQDGSVRFDMVGEVFASRDVFNGRSIFAEHFELVSVVAVEMVIERFSADGASYPLRPV
Ga0302194_100157401	3300030506	Bog	MRNICRAYQDGSVRFDTAGEVFASRDVFNGRVIFAEHFELVFVVAVEMVIERFCADSASYPLGP
Ga0302192_101584042	3300030507	Bog	MNILRAYQDGSVRFDMVGEVFASRDVFNGRSIFAEHFELVSVVAVEMVIERFSADGASYPLRP
Ga0302193_106043531	3300030519	Bog	SIGNICRAYQDGSIRFNTAGEVFASRDLFNGRAIFAEHFELVSVVAVEMVIERFSADGAS
Ga0302309_101888232	3300030687	Palsa	MRNICRAYQDGSVRFDTAGEIFASCDVFNGRAMVAKHFEFIPLVAVEMVIERLSAY
Ga0302312_102156231	3300030746	Palsa	QQRCVSLMSNICRAYQDDSIRFNTAGEVFASRDLFNGRAIFAEHFELVSVVAVEMVIERFSADGAS
Ga0302308_104467472	3300031027	Palsa	MRNICRAYQDGSVRFDTAGEIFASCDVFNGRAMVAKHFEFIPLVAVEMVIERLSAYGASYPLGPVLTPEHD
Ga0265760_103794652	3300031090	Soil	MRNICRAYEDGSVRFDTAGEIFASCDVFNGRAIFAEHFELVPVVAVEIVIERLSADGASY
Ga0302323_1011915921	3300031232	Fen	MRNICRAYQDGSVRFDTAGEVFASRDVFNGRVIFAEHFELVSVVAVEMVIERFPAESASYPLRPVLTPEHD
Ga0302318_107177961	3300031258	Bog	MRNICRAYQDGSVWFDMVGEVFASRDVFNGRAIFAEHFKLVSVVSVEMVIKRFSADGASYPLRPVL
Ga0302318_107223691	3300031258	Bog	MRNICRAYQDGSIRFDTAGEVFASRDLFNGRAIFAEHFELVSVVAVEMVIERFSADGASYPLRPVL
Ga0302187_105665001	3300031259	Bog	MRNICRAYQDGSIRFDTAGEVFASRDLFNGRAIFAEHFELVSVVAVEMVIERFSADGASYPLRPVLTPEH
Ga0302320_122600711	3300031524	Bog	MRNICGAYQDGSIRFDTAGEVFASRDAFNGRAIFAEHFELVSVVAVEMVIERFSADGASYPLRPVLTPE
Ga0302319_109682222	3300031788	Bog	MVGEVFASRDVFNGQAIFAEHFKLVSVVSVEMVIERFSADGASYPLRPVLTPEHDCVTTGVMPFLRSREDQFLVFPHD
Ga0302319_116270911	3300031788	Bog	MRNICRAYQYGSVRFDTTGEVFASRDVFNGRVIFAEHFELVFVVAVEMVIERFSADSASCPL
Ga0302315_100988523	3300031837	Palsa	AYQYGSVRFDTAGEVFASRDLFNGRAIFAEHFELVSVVAVEMVIERFSADGAS
Ga0302322_1030773311	3300031902	Fen	MRNICRAYQDGSVRFDTAGEVFASRDVFNGRVIFAEHFELVSVVAVEMVIERFPAESASYPLRPVLTPEHDSVTTGVIAFF
Ga0326728_104441713	3300033402	Peat Soil	MRKICCAYQDGSVRFETAREVFASRDIFNGRAIFAEHFEHVFVVAVEMVIERFSADSASYPLRPVLTPEHD
Ga0326727_105245001	3300033405	Peat Soil	MRKICCAYQDGSVRFETAREVFASRDVFNGRAIFAEHFEHVFVVAVEMVIERFSADSASYPLRPVLTPEHDYVATGVMPFFR
Ga0334828_127358_441_602	3300033822	Soil	AYQDGSIRFNTAGEVFASRDLFNGRAIFAEHFELVSVVAVEMVIERFSADGAS
Ga0334840_083309_2_172	3300033824	Soil	ICRAYQDGSIRFNTAGEVFASRDLFNGRAIFAEHFELVSVVAVEMVIERFSADGAS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093083

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences