Metagenome Family F093047

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F093047
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	89 residues
Representative Sequence	PSDQPGAARFERPLALQPRFMLVRMYTVAGGCITYQFSFATGAAPSLAIFVDQAIAFEPRSVLVDYIRHSEGLALCGRGAACPG
Number of Associated Samples	76
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	93.40 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (79.245 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (50.000 % of family members)
Environment Ontology (ENVO)	Unclassified (64.151 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (49.057 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.07% β-sheet: 18.75% Coil/Unstructured: 65.18%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF01569	PAP2	16.04
PF13191	AAA_16	9.43
PF03176	MMPL	5.66
PF00027	cNMP_binding	4.72
PF13401	AAA_22	4.72
PF00211	Guanylate_cyc	3.77
PF00561	Abhydrolase_1	1.89
PF02705	K_trans	0.94
PF02467	Whib	0.94
PF00583	Acetyltransf_1	0.94
PF12833	HTH_18	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	5.66
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	5.66
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	3.77
COG3158	K+ uptake protein Kup	Inorganic ion transport and metabolism [P]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.25 %
Unclassified	root	N/A	20.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.25 %
Unclassified	root	N/A	20.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.25 %
Unclassified	root	N/A	20.75 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	73.58 %
Unclassified	root	N/A	20.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	66.04 %
Unclassified	root	N/A	20.75 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4.72 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.89 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	53.77 %
Unclassified	root	N/A	20.75 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	4.72 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.89 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	43.40 %
Unclassified	root	N/A	20.75 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4.72 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	3.77 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.89 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.94 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	43.40 %
Unclassified	root	N/A	20.75 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4.72 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	3.77 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.89 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.94 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	43.40 %
Unclassified	root	N/A	20.75 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4.72 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	3.77 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.89 %
Actinacidiphila	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Actinacidiphila	0.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.94 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	43.40 %
Unclassified	root	N/A	20.75 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4.72 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	3.77 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.89 %
Actinacidiphila soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Actinacidiphila → Actinacidiphila soli	0.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.94 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005332\|Ga0066388_100482899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1877	Open in IMG/M
3300005332\|Ga0066388_103052311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	855	Open in IMG/M
3300005341\|Ga0070691_10412002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	764	Open in IMG/M
3300005435\|Ga0070714_100830116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	896	Open in IMG/M
3300005537\|Ga0070730_10101984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1985	Open in IMG/M
3300005764\|Ga0066903_100760177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1723	Open in IMG/M
3300005764\|Ga0066903_100992227	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1534	Open in IMG/M
3300005764\|Ga0066903_104237655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	767	Open in IMG/M
3300005764\|Ga0066903_104894345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	711	Open in IMG/M
3300005764\|Ga0066903_105798991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	649	Open in IMG/M
3300005764\|Ga0066903_108146343	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300005764\|Ga0066903_108373569	Not Available	528	Open in IMG/M
3300006162\|Ga0075030_100612023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	864	Open in IMG/M
3300010048\|Ga0126373_10317824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1559	Open in IMG/M
3300010048\|Ga0126373_11700869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	695	Open in IMG/M
3300010358\|Ga0126370_10856774	Not Available	816	Open in IMG/M
3300010359\|Ga0126376_11833338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	645	Open in IMG/M
3300010361\|Ga0126378_10673623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1147	Open in IMG/M
3300010362\|Ga0126377_10152883	Not Available	2170	Open in IMG/M
3300010366\|Ga0126379_10874300	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1000	Open in IMG/M
3300010376\|Ga0126381_104542242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	535	Open in IMG/M
3300012349\|Ga0137387_11253705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	521	Open in IMG/M
3300016294\|Ga0182041_11471012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	627	Open in IMG/M
3300016319\|Ga0182033_11689302	Not Available	573	Open in IMG/M
3300016357\|Ga0182032_12051642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	502	Open in IMG/M
3300016371\|Ga0182034_10399817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Actinacidiphila → Actinacidiphila soli	1127	Open in IMG/M
3300016371\|Ga0182034_11202129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	659	Open in IMG/M
3300016387\|Ga0182040_11984058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	500	Open in IMG/M
3300016404\|Ga0182037_11640443	Not Available	572	Open in IMG/M
3300017932\|Ga0187814_10156643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	850	Open in IMG/M
3300017942\|Ga0187808_10175323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	950	Open in IMG/M
3300017959\|Ga0187779_10111975	All Organisms → cellular organisms → Bacteria	1654	Open in IMG/M
3300017973\|Ga0187780_10013951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5867	Open in IMG/M
3300017973\|Ga0187780_11397456	Not Available	516	Open in IMG/M
3300018007\|Ga0187805_10493880	Not Available	573	Open in IMG/M
3300018058\|Ga0187766_10306279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1030	Open in IMG/M
3300020579\|Ga0210407_10188407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1601	Open in IMG/M
3300021405\|Ga0210387_11434112	Not Available	593	Open in IMG/M
3300021560\|Ga0126371_10611684	Not Available	1238	Open in IMG/M
3300021560\|Ga0126371_11961472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	704	Open in IMG/M
3300025904\|Ga0207647_10265367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	982	Open in IMG/M
3300025920\|Ga0207649_11521896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	530	Open in IMG/M
3300027703\|Ga0207862_1012656	All Organisms → cellular organisms → Bacteria	2485	Open in IMG/M
3300027857\|Ga0209166_10153440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1256	Open in IMG/M
3300031543\|Ga0318516_10643484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	604	Open in IMG/M
3300031549\|Ga0318571_10274796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	626	Open in IMG/M
3300031640\|Ga0318555_10749382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	527	Open in IMG/M
3300031680\|Ga0318574_10502336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	710	Open in IMG/M
3300031713\|Ga0318496_10227617	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1027	Open in IMG/M
3300031723\|Ga0318493_10386519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	764	Open in IMG/M
3300031751\|Ga0318494_10579507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	656	Open in IMG/M
3300031751\|Ga0318494_10669740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	607	Open in IMG/M
3300031764\|Ga0318535_10018800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2628	Open in IMG/M
3300031765\|Ga0318554_10337841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	856	Open in IMG/M
3300031768\|Ga0318509_10709706	Not Available	558	Open in IMG/M
3300031770\|Ga0318521_10833767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	562	Open in IMG/M
3300031771\|Ga0318546_10162900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1509	Open in IMG/M
3300031771\|Ga0318546_10506110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	847	Open in IMG/M
3300031771\|Ga0318546_11183147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	537	Open in IMG/M
3300031777\|Ga0318543_10085066	Not Available	1343	Open in IMG/M
3300031792\|Ga0318529_10250353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	824	Open in IMG/M
3300031793\|Ga0318548_10087625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1478	Open in IMG/M
3300031793\|Ga0318548_10406739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	667	Open in IMG/M
3300031795\|Ga0318557_10030411	Not Available	2179	Open in IMG/M
3300031795\|Ga0318557_10141173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1086	Open in IMG/M
3300031796\|Ga0318576_10328338	Not Available	723	Open in IMG/M
3300031799\|Ga0318565_10635761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	512	Open in IMG/M
3300031805\|Ga0318497_10558073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	642	Open in IMG/M
3300031819\|Ga0318568_10283506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1028	Open in IMG/M
3300031819\|Ga0318568_10665568	Not Available	648	Open in IMG/M
3300031821\|Ga0318567_10312354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	887	Open in IMG/M
3300031821\|Ga0318567_10378038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	802	Open in IMG/M
3300031821\|Ga0318567_10561518	Not Available	648	Open in IMG/M
3300031833\|Ga0310917_10632374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	726	Open in IMG/M
3300031890\|Ga0306925_10046463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4514	Open in IMG/M
3300031897\|Ga0318520_10790845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	595	Open in IMG/M
3300031910\|Ga0306923_11407057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	734	Open in IMG/M
3300031910\|Ga0306923_12234932	Not Available	548	Open in IMG/M
3300031910\|Ga0306923_12337465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	532	Open in IMG/M
3300031912\|Ga0306921_10181339	Not Available	2468	Open in IMG/M
3300031912\|Ga0306921_11278988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	813	Open in IMG/M
3300031942\|Ga0310916_10427204	Not Available	1128	Open in IMG/M
3300031942\|Ga0310916_10607785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	929	Open in IMG/M
3300031942\|Ga0310916_11376110	Not Available	579	Open in IMG/M
3300031942\|Ga0310916_11621220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	525	Open in IMG/M
3300031954\|Ga0306926_10491480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1509	Open in IMG/M
3300031954\|Ga0306926_11044422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	970	Open in IMG/M
3300031954\|Ga0306926_12310788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	595	Open in IMG/M
3300031962\|Ga0307479_11415239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	654	Open in IMG/M
3300032008\|Ga0318562_10262821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1002	Open in IMG/M
3300032008\|Ga0318562_10656592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	604	Open in IMG/M
3300032009\|Ga0318563_10278987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	903	Open in IMG/M
3300032009\|Ga0318563_10490888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	664	Open in IMG/M
3300032035\|Ga0310911_10619639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	628	Open in IMG/M
3300032039\|Ga0318559_10355844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	681	Open in IMG/M
3300032044\|Ga0318558_10519712	Not Available	594	Open in IMG/M
3300032055\|Ga0318575_10524841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	601	Open in IMG/M
3300032059\|Ga0318533_11186164	Not Available	559	Open in IMG/M
3300032060\|Ga0318505_10414531	Not Available	637	Open in IMG/M
3300032060\|Ga0318505_10613559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	511	Open in IMG/M
3300032065\|Ga0318513_10349528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	720	Open in IMG/M
3300032067\|Ga0318524_10079414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1605	Open in IMG/M
3300032068\|Ga0318553_10660974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	547	Open in IMG/M
3300032076\|Ga0306924_12232665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	557	Open in IMG/M
3300032089\|Ga0318525_10345136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	764	Open in IMG/M
3300032091\|Ga0318577_10066736	All Organisms → cellular organisms → Bacteria	1641	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.11%
Host-Associated	Host-Associated	1.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.34%
Aquatic	Environmental → Aquatic	3.77%
Plants	Host-Associated → Plants	1.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.34%
Freshwater	Environmental → Aquatic → Freshwater	2.83%
Sediment	Environmental → Aquatic → Sediment	0.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.25%
Loam	Environmental → Terrestrial → Soil → Loam	11.32%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.77%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	66.98%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.43%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.77%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	50.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.04%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.43%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.43%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.94%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066388_1004828991	3300005332	Tropical Forest Soil	RPLSLRPRFTLARMYIFAGGCITYQFSFVTGAAPSLAIPIDTAISFESRAMLVGHVRRAEDLALCGRGARCPG*
Ga0066388_1030523111	3300005332	Tropical Forest Soil	SDQAGAERFERPLSLQPRFTLARIYTFPGGCITYQFSFVPGAKPLLAIPVDTAVAFEPRSDLTGHIRSTEGLALCGRGAACTP*
Ga0070691_104120022	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	GAERFERPLSLQPRFTLVRMYTFPGGCITYQFDFIKGAASLLAIPVDIAIAFDPRSDLVSYVRMTEGLALCGRGAACPG*
Ga0070714_1008301161	3300005435	Agricultural Soil	GPRAVTVSLTTACDTSRAVRIPSDHAGAERFERPLSLQPRFMLTRMYTFPGGCIRYQFSFIEGAAPVLAIPIDIAVAFEPRSDLTSYVRATEGLALCGRGAACPR*
Ga0070730_101019843	3300005537	Surface Soil	TAVCDTSGAVRVPSDQPGAARFERPLALQPRFMLVRVYTVAGGCITYRFSFAAGAAPSLAIFVDQAITFEPRSVLVDYVRHTEGLALCGRGAACRG*
Ga0066903_1007601771	3300005764	Tropical Forest Soil	FDRPLSLRPRFTLVRMYTFPGGCITYQFSFIAGAAPSLAIPIDTAIAFEPRSVLVEHVQRTEDLALCGRGAPCPG*
Ga0066903_1009922271	3300005764	Tropical Forest Soil	GAVRVPSDQPGAARYERPLALQPRFVLVRMYVVAGACITYQFSFAAGAAPSLAIFVDQAVTFEPRSVLVGFVRHSEGLALCGRGARCPG*
Ga0066903_1042376551	3300005764	Tropical Forest Soil	FERPLSLRPRFELLRMYTFAGGCVSYRFSFVPGAAPMLAIPLDIAINFEPRSVLVNYVRRAEGLELCGRGALCPT*
Ga0066903_1048943452	3300005764	Tropical Forest Soil	DSDQAGPRAVTVSLTASCETSGAERIPSDQAGAERYERPLSLQPRFTLARIYAFPGGCITYQFSFVPGAKPLLAIPVDTAVAFEPRSDLTGHIRSTEGLALCGRGAACTP*
Ga0066903_1057989911	3300005764	Tropical Forest Soil	ERIPSDQAGAERYERPLSLQPRFTLARIYTFPGGCITYRFSFVPGAKPLLAIPVDTAVAFEPRSDLTGYIRSTEGLALCGRGAACTP*
Ga0066903_1081463432	3300005764	Tropical Forest Soil	WLDSDQAGPRAVTITLTPACGTSGAQRVPSDQPGVARFERPLSLQPRFTLVRMYTFPGGCITYRFSFVAGAAPSLAIPIDTAIAFEPRSVLVGHVQRIEDLALCGRGAPCPTPVPARPRGGAAVAVKW*
Ga0066903_1083735692	3300005764	Tropical Forest Soil	TSGAVHIPSDQPGTERFERPLSLRSRFELTRMYTFAGGCVSYLFSFRRGVAPLLAIPLDTAINFELRSVLVGYVERTEGLALCGRGAPCRT*
Ga0075030_1006120231	3300006162	Watersheds	GAARFERPLALEPRFMLVRMYTVAGGCITYQFSFATGAAPSLAIFVDQAVAFEPRSVLVDYIRRSEGLALCGRGAACPG*
Ga0126373_103178242	3300010048	Tropical Forest Soil	SDQAGPRAVTVSLTTSCETSGAERIPSDQAGADRFERPLSLQPRFTLARIYTFPGGCITYQFSFVPGAKPLLAIPVDTAVAFEPRSDLTGHIRSTEGLALCGRGAACTS*
Ga0126373_117008692	3300010048	Tropical Forest Soil	RWVAVTLTAACNTSGAVRIPSDQPGAARYERPLTLTPRFTLLRMYVVAGGCITYQFSFTAGAAPSLAIFVDEAIAFQPRSVLVGFIRHSEGLALCGRGAACPG*
Ga0126370_108567743	3300010358	Tropical Forest Soil	RPLTLQPRFTLVRMYVVAGGCITYQFSFTAGAAPSLAIFVDEAIAFEPRSVLVRFIRHSEGLALCGRGAACPG*
Ga0126376_118333381	3300010359	Tropical Forest Soil	GAVRAPAELRPRFTLARMYTYAGGCITYQFSFIPGAAPSLAIPIDTAIAFEPRSVLVGHVQQAEDLALCGRGARCPG*
Ga0126378_106736231	3300010361	Tropical Forest Soil	AARFDRPLSLQPQFTFVRMYTFAGGCITYQFRFVTGAAPSLAIPIDTAIAFKPRSALVGYVQRTEGLALCGRGAACHG*
Ga0126377_101528832	3300010362	Tropical Forest Soil	GAERFERPLSLQPRFTLARIYTFPGGCITYQFSFVPGAKPLLAIPVDTAVAFEPRSDLTGHIRSTEGLALCGRDAACTP*
Ga0126379_108743001	3300010366	Tropical Forest Soil	DQAGPRAVTVTLTAACDAAGAVQVPSDQPGAARYERPLALQPRFMLVRMYIVAGGCITYQFSFAAGAAPSLAIFVDQAVTFEPRSVLVGFVRHSEGLALCGRGAPCPG*
Ga0126381_1045422421	3300010376	Tropical Forest Soil	GAARFERPLSLRPRFMLQRFYTFPGGCVIYQFSFGPGAAPLLAIPIDSAVAFEPRSDLTSYVRHTEDLPLCGRGAACAQ*
Ga0137387_112537052	3300012349	Vadose Zone Soil	TITLTATCDTSSAHRIPSDQPGSARFERPISLRPRFKLERMYTFAGGCATYEFSFVPGAAPHLSVPLDSAVNFEPRSLLVSYVWQTEGLALCGRGASCPA*
Ga0182041_114710122	3300016294	Soil	RFERPLALEPRFMLVRRYTVAGGCITYQFSFVTGAAPSLAIFVDEAIAFEPRSVLVDYIRRSEGLALCGRGAACPG
Ga0182033_116893022	3300016319	Soil	PLALEPRFMLVRMYTVAGGCITYQFSFATGAAPSLAIFVDEAISFEPRSVLVDYIRRSEGLALCGRGAACPG
Ga0182032_120516421	3300016357	Soil	ERPLSLQPRFTLARIYTFPGGCITYQFSFVPGAKPLLAIPVDTAVAFEPRSDLTRHIRSTEGLALCGLDAPCHP
Ga0182034_103998171	3300016371	Soil	SSAARVPSDQPGAARFERLLALEPRFMLVRRYTVAGGCITYQFSFVTGAAPSLAIFVDEAIAFEPRSVLVDYIRRSEGLALCGRGAACPG
Ga0182034_112021292	3300016371	Soil	DSDQAGARAVTVSLTAACETAGAVRIPSDQAGAARFERPLSLRPTFMLQRFYTFPGGCITYQFSFIPGAAPVLAIPIDSAVAFEPRSDLTGYVRHTEDLPLCGWGAVCTR
Ga0182040_119840582	3300016387	Soil	RVPSDQPGAARFERPLALEPRFMLVRMYTVAGGCITYQFSFATGAAPSLAIFVDEAISFEPRSVLVDYIRRSEGLALCGRGAACPG
Ga0182037_116404431	3300016404	Soil	ERPLALQPRFMLVRMYTVAGGCITYQFSFAAGAAPSLAIFVDQAVTFEPRSVLVDYIRRSEGLALCGRGVPCPG
Ga0187814_101566432	3300017932	Freshwater Sediment	ALTITLTAACNTSGAERIPSDQPGAARFERPVTLQPRFTLIRMYTFAGGCISYQFSFAPGAAPTLGIPVDTAIAFEPRSTLVSQVRQTEGLELCGRGAACPG
Ga0187808_101753232	3300017942	Freshwater Sediment	GAVRVPSDQPGAARYERPLALQPRFMLVRMYIVAGGCITYQFSFAAGAAPSLAIFVDEAVTFEPRSVLVDYIRRSEGLALCGRGAACPG
Ga0187779_101119751	3300017959	Tropical Peatland	TVSLTAACSTVGAEPVPSDQPGAERFEHPTSLQPRFTLTRLYIFPGGCITYQFSFAPGAAPPLAIPVEDAIAFEPRSELVGHVKQTEGLALCGRGAACTG
Ga0187780_100139511	3300017973	Tropical Peatland	ATCSTAGAEPVASDQPGAERFEHPTSLQPRFTLTRLYIFPGGCITYQFSFAPGAAPPLAIPVEDAIAFEPRSELVGHVKQTEGLALCGRGAACTG
Ga0187780_113974562	3300017973	Tropical Peatland	GAERTPSDQPGAARFERPLTPQPRFTLVRMYTVDGGCITYQFSFAAGAAPSLSVFADEAIAFEPRSVLTGFVRRSEGLALCGQGAACPG
Ga0187805_104938802	3300018007	Freshwater Sediment	ARFERPLSLQPRFTLVRMYTVAGGCITYRFSFAAGAAPSLAISVDQAITFEPRSVLVDYIRRTEGLALCGRGAPCPG
Ga0187766_103062791	3300018058	Tropical Peatland	PRAVTITLTAACEVSGAVRVPSDQPGAARFERPLSLQPRFMLVRLYTVAGGCITYQFSFAAGAAPSLAIFVDQAVTFEPRSVLVDYVRRSEGLALCGRGAACPG
Ga0210407_101884071	3300020579	Soil	AARFERPLALEPRFMLVRMYTVAGGCITYRFSFAAGAAQSLAIFADEAVTFEPRSVLVDYIRRSEGLALCGRGAACPG
Ga0210387_114341122	3300021405	Soil	PSAVTISLTAACNTSGAVRIPSDQPGTARFERPLSLEPRFALQRMYTFAGGCITYQFSFVTGAAPSLAIPIDTAITFEPRSALVSHVELTEDLPLCGRGAPCPG
Ga0126371_106116841	3300021560	Tropical Forest Soil	CNTSGAERIPSDQPGAARYERPLTLQPRFTLVRMYLVAGGCITYRFSFTTGAEPSLAIFVDEAIAFEPRSVLVGFIRHSEGLALCGRGAACPG
Ga0126371_119614721	3300021560	Tropical Forest Soil	PSDQPGAERFERPLSLRPRFTLARMYIFAGGCITYQFSFVTGAAPSLAIPIDTAISFEPRSMLVGHVQRAEDLALCGRGARCPG
Ga0207647_102653672	3300025904	Corn Rhizosphere	AERVERPLSLQPRFMLARMYTFPGGCITYQFDFIKGAASLLAIPVDIAIAFDPRSDLVSYVRMTEGLALCGRGAACPG
Ga0207649_115218961	3300025920	Corn Rhizosphere	RPLSLQPRFMLARMYTFPGGCITYQFDFIKGAASLLAIPVDIAIAFDPRSDLVSYVRMTEGLALCGRGAACPG
Ga0207862_10126561	3300027703	Tropical Forest Soil	AGAERVPSDQPGAERFEHRASLQPRFTLTRLYTFPGGCITYQFSFAPGTAPLLAIPVDTAIAFEPRSELVGHVQRTEGLALCGRGAACTE
Ga0209166_101534403	3300027857	Surface Soil	DQPGAARFERPLTLQPRFMLVRMYTVAGGCITYRFSFAAGAAPSLAIFVDQAITFEPRSVLVDYVRHTEGLALCGRGAACRG
Ga0318516_106434842	3300031543	Soil	DQGGPRAVTVTLTAACNTSGAVRVPSDEPGAARYERPLALQPRFMLVRMYTVAGGCITYQFSFATGAAPSLAIFVDQAIAFEPRSVLVDYIRHSEGLALCGRGAACPG
Ga0318571_102747962	3300031549	Soil	AEHIPSDQAGAERFERPLSLQPRFTLARIYTFPGGCITYQFSFVPGAKPLLAIPVDTAVAFEPRSDLTGHIRSTEGLALCGLGAPCNP
Ga0318555_107493822	3300031640	Soil	DQPGARRYERPLSLQPRFTLVREYTFPGGCITYQFSFIAGAAPSLAIPIDTAIAFEPRSVLVRYVQRTEDLALCGRGAPCPG
Ga0318574_105023361	3300031680	Soil	PSDQAGAERFERPLSLQPRFTLARIYTFPGGCITYQFSFVPGAKPLLAIPVDTAVAFEPRSDLTGHIRSTEGLALCGLGGPCNP
Ga0318496_102276172	3300031713	Soil	VPSDQPGAARYERPLALQPRFMLVRMYIVAGGCITYQFSFAAGAAPSLAIFVDQAVTFEPRSVLVGFVRHSEGLALCGRGAPCPG
Ga0318493_103865192	3300031723	Soil	GSRAVTVSLTASCETSGAERIPSDQAGAERFERPLSLQPRFTLARIYTFPGGCITYQFSFVPGAKPLLAIPVDTAVAFEPRSDLTGYIRSTEGLALCGRGAPCTP
Ga0318494_105795071	3300031751	Soil	GAARFERPLALQPRFVLVRMYTVPGGCITYQFSFVSGAAPSLAIFVDQAVTFEPRSVLVDYIRLSEGLALCGRGAACPG
Ga0318494_106697402	3300031751	Soil	RVPSDQPGARRYERPLSLQPRFTLVREYTVPGGCITYQFSFIAGAAPSLAIPIDTAIAFEPRSVLVGYVQRTEDLALCGRGAPCPG
Ga0318535_100188006	3300031764	Soil	QPGAARFERPLALEPRFMLVRRYTVAGGCITYQFSFVTGAAPSLAIFVDEAIAFEPRSVLVDYIRRSEGLALCGRGAACPG
Ga0318554_103378413	3300031765	Soil	DQPGAARLERPLALEPRFMLVRMYTVAGGCITYQFSFATGAAPSLAIFVDEAISFEPRSVLVDYIRRSEGLALCGRGAACPG
Ga0318509_107097062	3300031768	Soil	SGAVRVPSDQPGAARFERPLALEPRFMLVRMYIVAGGCITYQFSFAAGAAPSLAIFVDQAVTFEARSILVDYIRQSEGLALCGRGAACPG
Ga0318521_108337671	3300031770	Soil	SCETSGAEHIPSDQAGAERFERPLSLQPRFTLARIYTFPGGCITYQFSFVPGAKPLLAIPVDTAVAFEPRSDLTGHIRSTEGLALCGLGGPCNP
Ga0318546_101629001	3300031771	Soil	LDSDLAGPHAVTVTLTAACEVSGAVRVPSDQPGAARFERPLALQPRFMLVRMYTVAGGCITYQFSFATGAAPSLAIFVDQAIAFEPRSVLVDYIRHSEGLALCGRGAACPG
Ga0318546_105061101	3300031771	Soil	AEQVTRVPSDQPGAARFERPLALEPRFMLVRMYTVAGGCITYQFSFATGAAPSLAIFVDEAISFEPRSVLVDYIRRSEGLALCGRGAACPG
Ga0318546_111831472	3300031771	Soil	RFERPLSLRPTFMLQRFYTFPGGCITYQFSFIPGAAPVLAIPIDSAVAFESRSDLTGHVRHTEDLPLCGRGAVCTR
Ga0318543_100850661	3300031777	Soil	CGSRPTSRGAARFERPLALQPRFMLVRMYIVAGGCITYQFSFATGAAPSLAIFVDQAVTFEPRSVLVNYIRRSEGLALCGRGVPCPG
Ga0318529_102503531	3300031792	Soil	SGAVRVPSDQPGAARFERPLALQPRFMLVRMYTVAGGCITYQFSFATGAAPSLAIFVDQAIAFEPRSVLVDYIRHSEGLALCGRGAACPG
Ga0318548_100876251	3300031793	Soil	VTLTAACNTSGAVRVPSDQPGAARYERPLALQPRFMLVRMYIVAGGCITYQFSFATGAAPSLAIFVDQAVTFEPRSVLVNYIRRSEGLALCGRGVPCPG
Ga0318548_104067392	3300031793	Soil	SGAVRIPSDQPGAARFEHPQSLAPQFTLKRMYTFAGGCITYQFSFVPGAAPSLAIPIDTAITFEPRSTLVSYVRQTENLALCGRGARCPG
Ga0318557_100304112	3300031795	Soil	SGAVRVPSDQPGAARFERPLALQPRFMLVRMYIVAGGCITYQFSFATGAAPSLAIFVDQAVTFEPRSVLVNYIRRSEGLALCGRGVPCPG
Ga0318557_101411732	3300031795	Soil	ETSGAEHIPSDQAGAERFERPLSLQPRFTLARIYTFPGGCITYQFSFVPGAKPLLAIPVDTAVAFEPRSDLTGHIRSTEGLALCGLGGPCNP
Ga0318576_103283382	3300031796	Soil	PLALQPRFMLVRMYIVAGGCITYQFSFATGAAPSLAIFVDQAVTFEPRSVLVNYIRRSEGLALCGRGVPCPG
Ga0318565_106357611	3300031799	Soil	DQAGPRAVTVTLTASCETSGAEHIPSDQAGAERFERPLSLQPRFTLARIYTFPGGCITYQFSFVPGAKPLLAIPVDTAVAFEPRSDLTRHIRSTEGLALCGLDAPCHP
Ga0318497_105580731	3300031805	Soil	ERPLSLQPRFTLARIYTFPGGCITYQFSFVPGAKPLLAIPVDTAVAFEPRSDLTGYIRSTEGLALCGRGAPCTP
Ga0318568_102835061	3300031819	Soil	DQAGAERFERPLSLQPRFTLARIYTFPGGCITYQFSFVPGAKPLLAIPVDTAVAFEPRSDLTGYIRSTEGLALCGRGTACNP
Ga0318568_106655681	3300031819	Soil	TAACDAAGAVRVPSDQPGAARYERPLALQPRFMLVRMYIVAGGCITYQFSFAAGAAPSLAIFVDQAVTFEPRSVLVGFVRHSEGLALCGRGAPCPG
Ga0318567_103123541	3300031821	Soil	PRAVTVSLAASCETSGAERIPSDQAGAERFERPLSLQPRFTLARIYTFPGGCITYQFSFVPGAKPLLAIPVDTAVAFEPRSNLTGHIRSTEGLALCGRGAACTP
Ga0318567_103780382	3300031821	Soil	VPSDQPGAARFERPLALQPRFMLVRMYTVAGGCITYQFSFATGAAPSLAIFVDQAIAFEPRSVLVDYIRHSEGLALCGRGAACPG
Ga0318567_105615181	3300031821	Soil	SGAVRVPSDQPGAARYERPLALQPRFMLVRMYIVAGGCITYQFSFATGAAPSLAIFVDQAVTFEPRSVLVNYIRRSEGLALCGRGVPCPG
Ga0310917_106323742	3300031833	Soil	LTAACDTSGAVRVPSDQPGAARFERPLALEPRFMLVRMYTVAGGCITYQFSFATGAAPSLAIFVDEAISFEPRSVLVDYIRRSEGLALCGRGAACPG
Ga0306925_100464631	3300031890	Soil	PSDQPGAERFERPLSLRPRFTLARMYTFAGGCITYRFSFVTGAAPSLAIPIDTAIAFEPRSVLVGHVQHAENLALCGRGTRCPG
Ga0318520_107908451	3300031897	Soil	FERPLSLQLRFTLARIYTFPGGCITYQFSFVPGAKPLLAIPVDTAVAFEPRSDLTGYIRSTEGLALCGRGAPCTP
Ga0306923_114070571	3300031910	Soil	LTGACDTSGAVRVPSDQPGAARFERPLALEPRFMLVRMYTVAGGCITYQFSFATGAAPSLAIFVDEAISFEPRSVLVDYIRRSEGLALCGRGAACPG
Ga0306923_122349322	3300031910	Soil	LALQPRFMLVRMYTVAGGCITYQFSFATGAAPSLAIFVDQAIAFEPRSVLVDYIRHSEGLALCGRGAACPG
Ga0306923_123374651	3300031910	Soil	RVPSDQPGARRYERPLSLQPRFTLVREYTFPGGCITYQFSFITGAAPSLAIPIDTAIAFEPRSVLVGYVQRTEDLALCGRGAPCPR
Ga0306921_101813392	3300031912	Soil	FERPLSLQPRFTLARIYTFPGGCITYQFSFVPGAKPLLAIPVDTAVAFEPRSNLTGHIRSTEGLALCGRGAACTP
Ga0306921_112789882	3300031912	Soil	ERFERPLSLRPRFTLARMYTFAGGCITYRFSFVTGAAPSLAIPIDTAIAFEPRSVLVGHVQHAENLALCGRGTRCPG
Ga0310916_104272041	3300031942	Soil	GAARFERPLTLQPRFTLTRMYTFAGGCVSYQFSFAPGAAPTLGIPVDTAIAFEPRSTLVSHVRQTEGLALCGRGAACPG
Ga0310916_106077851	3300031942	Soil	MASCETSGAEHIPSDQAGAERFERPLSLQPRFTLARIYTFPGGCITYQFSFVPGAKPLLAIPVDTAVAFEPRSDLTGHIRSTEGLALCGLGGPCNP
Ga0310916_113761101	3300031942	Soil	EAVRVPSDQPGAARFERPLALQPRFMLVRMYTVAGGCITYQFSFATGAAPSLAIFVDQAIAFEPRSVLVDYIRHSEGLALCGRGAACPG
Ga0310916_116212201	3300031942	Soil	AERIPSDQAGAERFERPLSLQPRFTLARIYTFPGGCITYQFSFVPGAKPLLAIPVDTAVAFEPRSDLTGHIRSTEGLALCGRGAACTP
Ga0306926_104914803	3300031954	Soil	PSDQPGAARFERPLALQPRFMLVRMYTVAGGCITYQFSFATGAAPSLAIFVDQAIAFEPRSVLVDYIRHSEGLALCGRGAACPG
Ga0306926_110444221	3300031954	Soil	DQPGAARFERPLALQPRFMLVRMYTVAGGCITYQFSFVSGAAPSLAIFVDQAVTFEPRSVLVDYIRLSEGLALCGRGAACPG
Ga0306926_123107882	3300031954	Soil	FERPLSLQPRFTLARIYTFPGGCITYQFSFVPGAKPLLAIPVDTAVAFEPRSDLTGYIRSTEGLALCGRGAPCTP
Ga0307479_114152392	3300031962	Hardwood Forest Soil	RPLALQPRFMLVRVYTVAGGCITYRFSFAAGAAPSLAIFVDQAITFEPRSVLVDYVRHTEGLVLCGRGAACRG
Ga0318562_102628213	3300032008	Soil	PGAARLERPLALEPRFMLVRMYTVAGGCITYQFSFATGAAPSLAIFVDEAISFEPRSVLVDYIRRSEGLALCGRGAACPG
Ga0318562_106565922	3300032008	Soil	SDQAGPRAVTVSLTASCETSGAERIPSDQAGAERFERPLSLQPRFTLARIYTFPGGCITYQFSFVPGAKPLLAIPVDTAVAFEPRSNLTGHIRSTEGLALCGRGAACTP
Ga0318563_102789871	3300032009	Soil	DSDLAGPHAVTVTLTAACEVSGAVRVPSDQPGAARFERPLALQPRFMLVRMYTVAGGCITYQFSFATGAAPSLAIFVDQAIAFEPRSVLVDYIRHSEGLALCGRGAACPG
Ga0318563_104908881	3300032009	Soil	QAGPRAVTVTLTASCETSGAEHIPSDQAGAERFERPLSLQPRFTLARIYTFPGGCITYQFSFVPGAKPLLAIPVDTAVAFEPRSDLTRHIRSTEGLALCGLDAPCHP
Ga0310911_106196392	3300032035	Soil	ERPLSLQPRFTLVREYTVPGGCITYQFSFIAGAAPSLAIPIDTAIAFEPRSVLVGYVQRTEDLALCGRGAPCPG
Ga0318559_103558442	3300032039	Soil	ITLTGACDTSGAVRVPSDQPGAARFERPLALEPRFMLVRMYTVAGGCITYQFSFATGAAPSLAIFVDEAISFEPRSVLVDYIRRSEGLALCGRGAACPG
Ga0318558_105197121	3300032044	Soil	DQAGPRAVTVTLTAACNTSGAVRVPSDQPGAARYERPLALQPRFMLVRMYTVAGGCITYRFSFATGAAPSLAIFVDEAIAFEPRSVLVGSIRHREGLALCGRGAACPG
Ga0318575_105248411	3300032055	Soil	AVRVPSDQPGAARFERPLALQPRFMLVRMYTVAGGCITYQFSFVSGAAPSLAIFVDQAVTFEPRSVLVDYIRLSEGLALCGRGAACPG
Ga0318533_111861641	3300032059	Soil	LTITLTAACTTTGAERIPSDQPGAARFEHPLTLQPRFTLLRMYTFPGGCISYRFSFVPGAASSLAIPLDTAIAFQPRSTLVSYVRQTEGLALCGRGAACPG
Ga0318505_104145312	3300032060	Soil	SDQPGAVRFERPLALEPRFLLVRMYIVAGGCITYQFSFIAGAPPSLAIFADEAVTFESRSVLVDYIRRSEGLALCGRGAACPG
Ga0318505_106135592	3300032060	Soil	RIPSDQPGAQRFERPLSLVPRFALDRMYTFAGGCITYQFSFVPGAAPSLAIPIDTAITFEPRSTLVSYVRQTENLALCGRGARCPG
Ga0318513_103495281	3300032065	Soil	PRAVTVSLAASCETSGAERIPSDQAGAERFERPLSLQPRFTLARIYTFPGGCITYQFSFVPGAKPLLAIPVDTAVAFEPRSDLTGHIRSTEGLALCGRGAACTP
Ga0318524_100794141	3300032067	Soil	EVSGAVRVPSDQPGAARFERPLALQPRFMLVRMYTVAGGCITYQFSFATGAAPSLAIFVDQAIAFEPRSVLVDYIRHSEGLALCGRGAACPG
Ga0318553_106609742	3300032068	Soil	SLTAACETAGAVRIPSDQAGAARFERPLSLRPTFMLQRFYTFPGGCITYQFSFIPGAAPVLAIPIDSAVAFESRSDLTGHVRHTEDLPLCGRGAVCTR
Ga0306924_122326652	3300032076	Soil	LSAACDTSGAVRVPSDQPGAARFERPLALQPRFMLVRMYTVAGGCITYQFSFAAGAAPSLAIFVDQAVTFEPRSVLVDYIRRSEGLALCGRGAACPG
Ga0318525_103451362	3300032089	Soil	AGHRAVTVTLTATCSTSDASRIPSDQPGADRFERPRSLQPRFTLARMYTFPGGCITYQFSFITGAAPSLAIPIDTAIAFEPRSVLVGYVQRTEDLALCGRGAPCPR
Ga0318577_100667361	3300032091	Soil	FERPLALEPRFMLVRMYTVAGGCITYQFSFATGAAPSLAIFVDEAIAFEPRSVLVDYIRRSEGLALCGRGAACPG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F093047

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences