Metagenome / Metatranscriptome Family F093045

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093045
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	58 residues
Representative Sequence	MRELPIITPKKSVERAAREARLAKALRENLVRRKEQKRAQEGRAVRQPQGTDREDEPPA
Number of Associated Samples	76
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	3.77 %
% of genes near scaffold ends (potentially truncated)	40.57 %
% of genes from short scaffolds (< 2000 bps)	80.19 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.943 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (44.340 % of family members)
Environment Ontology (ENVO)	Unclassified (56.604 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.68% β-sheet: 0.00% Coil/Unstructured: 56.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00275	EPSP_synthase	73.58
PF01634	HisG	2.83
PF11164	DUF2948	1.89
PF05063	MT-A70	0.94
PF13714	PEP_mutase	0.94
PF01370	Epimerase	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0040	ATP phosphoribosyltransferase	Amino acid transport and metabolism [E]	2.83
COG4725	N6-adenosine-specific RNA methylase IME4	Translation, ribosomal structure and biogenesis [J]	1.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.94 %
All Organisms	root	All Organisms	49.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.94 %
cellular organisms	root	All Organisms → cellular organisms	49.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.94 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	49.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	22.64 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	22.64 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	10.38 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.94 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	2.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.83 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.94 %
Devosiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.94 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	2.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.83 %
Devosia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia	0.94 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.94 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	2.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.83 %
Devosia psychrophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia → Devosia psychrophila	0.94 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003218\|JGI26339J46600_10014004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2336	Open in IMG/M
3300003219\|JGI26341J46601_10000070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	28902	Open in IMG/M
3300004092\|Ga0062389_100551843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1309	Open in IMG/M
3300004152\|Ga0062386_100015846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	5431	Open in IMG/M
3300004635\|Ga0062388_100258886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1422	Open in IMG/M
3300005332\|Ga0066388_100072550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3760	Open in IMG/M
3300005363\|Ga0008090_10072239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	991	Open in IMG/M
3300005363\|Ga0008090_10089122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	564	Open in IMG/M
3300005764\|Ga0066903_100470576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2112	Open in IMG/M
3300006050\|Ga0075028_100734369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia → Devosia psychrophila	597	Open in IMG/M
3300010048\|Ga0126373_11853538	Not Available	666	Open in IMG/M
3300010048\|Ga0126373_12618839	Not Available	562	Open in IMG/M
3300010154\|Ga0127503_10398677	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300010358\|Ga0126370_10648628	All Organisms → cellular organisms → Bacteria	919	Open in IMG/M
3300010361\|Ga0126378_10038990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	4336	Open in IMG/M
3300010361\|Ga0126378_10141600	All Organisms → cellular organisms → Bacteria	2437	Open in IMG/M
3300010361\|Ga0126378_10829384	Not Available	1033	Open in IMG/M
3300010376\|Ga0126381_104166319	Not Available	561	Open in IMG/M
3300016294\|Ga0182041_10364493	All Organisms → cellular organisms → Bacteria	1219	Open in IMG/M
3300016294\|Ga0182041_11159644	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300016319\|Ga0182033_12095480	Not Available	516	Open in IMG/M
3300016341\|Ga0182035_10968203	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300016341\|Ga0182035_11036767	Not Available	728	Open in IMG/M
3300016357\|Ga0182032_10096391	Not Available	2076	Open in IMG/M
3300016357\|Ga0182032_10172345	Not Available	1622	Open in IMG/M
3300016357\|Ga0182032_10303391	Not Available	1262	Open in IMG/M
3300016357\|Ga0182032_10408508	Not Available	1100	Open in IMG/M
3300016371\|Ga0182034_10559250	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300016371\|Ga0182034_11444402	Not Available	602	Open in IMG/M
3300016371\|Ga0182034_11459610	Not Available	599	Open in IMG/M
3300016404\|Ga0182037_10136991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1825	Open in IMG/M
3300016404\|Ga0182037_10162887	Not Available	1694	Open in IMG/M
3300016445\|Ga0182038_10151910	Not Available	1768	Open in IMG/M
3300020580\|Ga0210403_10431278	Not Available	1075	Open in IMG/M
3300020580\|Ga0210403_10941709	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300020581\|Ga0210399_10336059	Not Available	1261	Open in IMG/M
3300021171\|Ga0210405_10407260	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300021405\|Ga0210387_10504039	All Organisms → cellular organisms → Bacteria	1076	Open in IMG/M
3300021432\|Ga0210384_10532155	Not Available	1057	Open in IMG/M
3300021476\|Ga0187846_10000117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	46639	Open in IMG/M
3300021476\|Ga0187846_10033419	Not Available	2323	Open in IMG/M
3300021560\|Ga0126371_10088145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3062	Open in IMG/M
3300021560\|Ga0126371_10316260	Not Available	1691	Open in IMG/M
3300021560\|Ga0126371_11036330	Not Available	961	Open in IMG/M
3300027070\|Ga0208365_1015596	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300027698\|Ga0209446_1001902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	5056	Open in IMG/M
3300027783\|Ga0209448_10110748	Not Available	919	Open in IMG/M
3300027812\|Ga0209656_10263578	Not Available	809	Open in IMG/M
3300027824\|Ga0209040_10055215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2377	Open in IMG/M
3300027874\|Ga0209465_10444894	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	648	Open in IMG/M
3300030844\|Ga0075377_11175581	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300031057\|Ga0170834_112338545	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300031057\|Ga0170834_114109563	Not Available	1169	Open in IMG/M
3300031231\|Ga0170824_102180739	Not Available	1342	Open in IMG/M
3300031231\|Ga0170824_110619897	Not Available	1772	Open in IMG/M
3300031446\|Ga0170820_11724144	Not Available	1631	Open in IMG/M
3300031474\|Ga0170818_113573060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1968	Open in IMG/M
3300031543\|Ga0318516_10022993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3210	Open in IMG/M
3300031543\|Ga0318516_10095386	Not Available	1676	Open in IMG/M
3300031543\|Ga0318516_10159458	Not Available	1297	Open in IMG/M
3300031543\|Ga0318516_10520864	Not Available	681	Open in IMG/M
3300031544\|Ga0318534_10097124	Not Available	1685	Open in IMG/M
3300031544\|Ga0318534_10192079	Not Available	1179	Open in IMG/M
3300031545\|Ga0318541_10482011	Not Available	694	Open in IMG/M
3300031546\|Ga0318538_10040929	Not Available	2224	Open in IMG/M
3300031549\|Ga0318571_10180884	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300031561\|Ga0318528_10023081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2998	Open in IMG/M
3300031572\|Ga0318515_10520515	Not Available	634	Open in IMG/M
3300031573\|Ga0310915_10035027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3161	Open in IMG/M
3300031573\|Ga0310915_10121322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1784	Open in IMG/M
3300031640\|Ga0318555_10646924	Not Available	572	Open in IMG/M
3300031679\|Ga0318561_10068167	Not Available	1818	Open in IMG/M
3300031680\|Ga0318574_10037944	Not Available	2477	Open in IMG/M
3300031680\|Ga0318574_10561109	Not Available	669	Open in IMG/M
3300031681\|Ga0318572_10581559	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300031719\|Ga0306917_10667922	Not Available	817	Open in IMG/M
3300031719\|Ga0306917_10730752	All Organisms → cellular organisms → Bacteria	777	Open in IMG/M
3300031724\|Ga0318500_10456974	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300031744\|Ga0306918_10566741	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300031747\|Ga0318502_10192790	Not Available	1176	Open in IMG/M
3300031747\|Ga0318502_10339377	Not Available	888	Open in IMG/M
3300031753\|Ga0307477_10001843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	17052	Open in IMG/M
3300031754\|Ga0307475_10189439	Not Available	1642	Open in IMG/M
3300031754\|Ga0307475_11572282	Not Available	503	Open in IMG/M
3300031770\|Ga0318521_10943244	Not Available	528	Open in IMG/M
3300031798\|Ga0318523_10184379	Not Available	1042	Open in IMG/M
3300031798\|Ga0318523_10387309	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300031833\|Ga0310917_10186237	Not Available	1384	Open in IMG/M
3300031859\|Ga0318527_10296509	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300031890\|Ga0306925_11771750	Not Available	593	Open in IMG/M
3300031893\|Ga0318536_10043583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2146	Open in IMG/M
3300031893\|Ga0318536_10162109	All Organisms → cellular organisms → Bacteria	1137	Open in IMG/M
3300031894\|Ga0318522_10293986	Not Available	616	Open in IMG/M
3300031896\|Ga0318551_10893593	Not Available	518	Open in IMG/M
3300031942\|Ga0310916_11101356	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300031947\|Ga0310909_10097569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2357	Open in IMG/M
3300031981\|Ga0318531_10302674	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300032041\|Ga0318549_10365535	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300032051\|Ga0318532_10055124	Not Available	1368	Open in IMG/M
3300032051\|Ga0318532_10362253	Not Available	515	Open in IMG/M
3300032064\|Ga0318510_10499260	Not Available	527	Open in IMG/M
3300032090\|Ga0318518_10260273	Not Available	890	Open in IMG/M
3300032094\|Ga0318540_10438541	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300032261\|Ga0306920_103591367	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300032515\|Ga0348332_10046008	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300033289\|Ga0310914_11393983	Not Available	604	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.62%
Aquatic	Environmental → Aquatic	10.38%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.79%
Freshwater	Environmental → Aquatic → Freshwater	9.43%
Cave	Environmental → Terrestrial → Cave	1.89%
Sediment	Environmental → Aquatic → Sediment	0.94%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.02%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.49%
Loam	Environmental → Terrestrial → Soil → Loam	3.77%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	1.89%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	71.70%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.43%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.49%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.77%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.89%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	44.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.43%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	8.49%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	5.66%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.83%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	1.89%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.89%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.94%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300030844	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26339J46600_100140043	3300003218	Bog Forest Soil	MSEPPRMTPEKSVERAAREARLAKALRDNLVRRKEQKRAQDRQAVRQSQETDREREPPA*
JGI26341J46601_1000007014	3300003219	Bog Forest Soil	MTPEKSVERAAREARLAKALRDNLVRRKEQKRAQDRQAVRQSQETDREREPPA*
Ga0062389_1005518432	3300004092	Bog Forest Soil	MSEPPRIAPRKSIERAAREARLAKALRENLVRRKEQKRAQDRRAVSQSEGTDREREPPA*
Ga0062386_1000158467	3300004152	Bog Forest Soil	MSEPPKITPKKSTDRAAREERLAKALRENLVRRKEQKRAQDRPEVAPSPGTSPEREPPA*
Ga0062388_1002588862	3300004635	Bog Forest Soil	MSEPPQIAPRKSIERAAREARLAKALRENLVRRKEQKRAQDRRAVSQSEGTDREREPPA*
Ga0066388_1000725505	3300005332	Tropical Forest Soil	MSEPPQITPKKSVERAAREARLAKALRDNLVRRKGQKRAQGRRAIAQSRETDPEREPPA*
Ga0008090_100722392	3300005363	Tropical Rainforest Soil	MSDSPIITPKKSVERAAREARLAKALRENLLRRKEQKRAQEGRAAPQSQAPGRKREPPA*
Ga0008090_100891221	3300005363	Tropical Rainforest Soil	MSDSPIITPKKSVERAAREARLAKALRENLLRRKEQKRAQEGRAAPQSQETEREREPPA*
Ga0066903_1004705762	3300005764	Tropical Forest Soil	MSEPPQITPKKSVERAAREARLAKALRDNLVRRKGQKRAQGRRAVAQSRETDPEREPPA*
Ga0075028_1007343691	3300006050	Watersheds	MSEPPHITPKKSVERAAREARLAKALRENLVRRKGQKRAQDRRGVAQSNETDPEREPPA*
Ga0126373_118535381	3300010048	Tropical Forest Soil	MAEPPTITPKKSIERAAREARLAKALRENLVRRKEQKRAQDRKAGAQGTNREREPPA*
Ga0126373_126188391	3300010048	Tropical Forest Soil	MSQPPHITPKKSAERAAREARLAKALRENLVRRKEQKRAQEQRGVAQSDAPDPGREPPG*
Ga0127503_103986772	3300010154	Soil	MSQPPHITPKKSAERAAREARLAKALRENLVRRKEQRRAQEQRAVTQSDAPDPGREPPG*
Ga0126370_106486281	3300010358	Tropical Forest Soil	MSEPPQITPKKSVERAAREARLAKALRDNLVRRKGQKRAQGRRAVAQSREMDPEREPPA*
Ga0126378_100389905	3300010361	Tropical Forest Soil	MSATPIITPKKSVERAAREARLAKALRENLVRRKEQKRAQEGRTVPQSQAPGRKREPPA*
Ga0126378_101416002	3300010361	Tropical Forest Soil	MSEPPRITPKKSLERAAREARLAKALRENLVRRKGQKRAQARRAVAQSQRTDPEREPPA*
Ga0126378_108293842	3300010361	Tropical Forest Soil	MSEPPQITPKKSVERAAREARLAKALRENLVRRKGQKRAQGRRAVAQPRETDPEREPPA*
Ga0126381_1041663191	3300010376	Tropical Forest Soil	MREPPRIAARKSVERVAREARLAKALRENLVRRKEQKRAQDQRAVQDLQGTDREREPPA*
Ga0182041_103644932	3300016294	Soil	MSVPPTITPKKSVERAAREARLAKALRENLVRRKAQKRAQEGRTVPQSQTPDPKREPPA
Ga0182041_111596441	3300016294	Soil	RIATRKSVERVAREARLAKALRENLVRRKEQKRAQDQQAVQHAQGTDREREPPA
Ga0182033_120954802	3300016319	Soil	MREPPRIASRKSVERVAREARLAKALRENLVRRKEQKRAQDQRAVQHAQGTDRER
Ga0182035_109682031	3300016341	Soil	ITPKKSVEREAREARLAKALRENLVRRKEQKRAQEGRTVPQSQAPGRKREPPA
Ga0182035_110367672	3300016341	Soil	MSVTPTITPKKRVERAAREARLAKALRENLVRRKAQKRAQEGRTVPQSQTPDPKREPPA
Ga0182032_100963912	3300016357	Soil	MSVTPTITPKKSVERAAREARLAKALRENLVRRKEQKRTQEGRTVPQSQTPDPKREPPA
Ga0182032_101723452	3300016357	Soil	MRGAPIITPKKSVEREAREARLAKALRENLVRRKEQKRAQEGRTVPQSQPSGRKREP
Ga0182032_103033912	3300016357	Soil	MSEPPQITPKKSVERAAREARLAKALRDNLVRRKGQKRAQGRRAVAQPRETDPEREPPA
Ga0182032_104085083	3300016357	Soil	MRELPIITPKKSVERAAREARLAKALRDNLVRRKQQKRAHEGRAARQPQGTDREDEPPA
Ga0182034_105592502	3300016371	Soil	MSDSPIITPKKSVELAAREARLAKALRENLVRRKEQKRAQEGRTVPQSQAPGRKREPPA
Ga0182034_114444021	3300016371	Soil	MSVTPTITPKKSVERAAREARLAKALRENLVRRKEQKRAQERRTVPQSQTLDPKREPPA
Ga0182034_114596101	3300016371	Soil	MSELPNITSKKSIKRAAREARLAKALRDNLVRRKEQKRAQDRRAVPQSEKTD
Ga0182037_101369911	3300016404	Soil	VHHRMRGAPIITPKKSVEREAREARLAKALRENLVRRKEQKRAQEGRTVPQSQPSGRKREPPA
Ga0182037_101628872	3300016404	Soil	MRELPIITPKKSVERAAREARLAKALRENLVRRKEQKRAQEGRAVRQPQGTDGEDEPPA
Ga0182038_101519101	3300016445	Soil	MSVTPTITPKKSVERAAREARLAKALRENLVRRKEQKRAQEGQRVPQSRSPDRKREPPA
Ga0210403_104312781	3300020580	Soil	VTLPLHRSMSQPPHITPKKSAERAAREARLAKALRENLVRRKEQRRAQEQRAVTQSDAPDPGREPPG
Ga0210403_109417092	3300020580	Soil	MREPPRIAARKSVERVAREARLAKALRENLVRRKEQKRAQDQRAVQHLQGTDLEREPPA
Ga0210399_103360592	3300020581	Soil	MSEPPHITPKKSVEQAAREARLAKALRENLVRRKGQKRAQDRRAVAQSKETDPEREPSA
Ga0210405_104072602	3300021171	Soil	MSEPPHITPKKSVERAAREARLAKALRENLVRRKGQKRAQDRRAVAQSKETDPEREPSA
Ga0210387_105040392	3300021405	Soil	MREPPRIAARKSVERVAREARLAKALRENLMRRKEQKRAQDQRAVQHLQGTDREREPPA
Ga0210384_105321551	3300021432	Soil	PPHITPKKSVERAAREARLAKALRENLVRRKGQKRAQDRRAVAQSKETDPEREPSA
Ga0187846_1000011740	3300021476	Biofilm	MRESPRITPEKSVERAAREARLAKALRENLVRRKEQKRARDQRAMSQSQGTDKEREPPA
Ga0187846_100334192	3300021476	Biofilm	MSELPIITPQKTVARTAREARLAKALRENLVRRKEQKRAQEGRAARQPQGTDREDEPPA
Ga0126371_100881454	3300021560	Tropical Forest Soil	MSQPPHITPKKSAERAAREARLAKALRENLVRRKEQKRAQEQRGVAQSDAPDPRREPPG
Ga0126371_103162602	3300021560	Tropical Forest Soil	MSATPIITPKKSVERAAREARLAKALRENLVRRKEQKRAQEGRTVPQSQAPGRKREPPA
Ga0126371_110363302	3300021560	Tropical Forest Soil	VALPLHHRMRGAPIITPKKSVEREAREARLAKALRENLVRRKEQKRAQEGRTVPQSQPSGRKREPPA
Ga0208365_10155962	3300027070	Forest Soil	MSEPPRITPKKTIEQAAREARLAKALRENLLRRKEQKRAQDRRAVPQSQATDPEREPPA
Ga0209446_10019023	3300027698	Bog Forest Soil	MTPEKSVERAAREARLAKALRDNLVRRKEQKRAQDRQAVRQSQETDREREPPA
Ga0209448_101107481	3300027783	Bog Forest Soil	MREPPRIAARKSAEQAAREARLAKALRENLVRRKEQKRARDQRAFQHLQGTDREREPPA
Ga0209656_102635781	3300027812	Bog Forest Soil	STDRAAREERLAKALRENLVRRKEQKRAQDRPEVAPSPGTSPEREPPA
Ga0209040_100552153	3300027824	Bog Forest Soil	MSEPPKITPKKSTDRAAREERLAKALRENLVRRKEQKRAQDRPEVAPSPGTSPEREPPA
Ga0209465_104448941	3300027874	Tropical Forest Soil	ITPKKSVERAAREARLAKALRDNLVRRKGQKRAQGRRPVAQSRETDPEREPPT
Ga0075377_111755811	3300030844	Soil	PKESAERAAREARLAKALRENLARRKEQRRAQEQRALTQSDAPDPGREPPG
Ga0170834_1123385451	3300031057	Forest Soil	PKKSAERAAREARLAKALRENLVRRKEQKRAQEQRAVTQSDAPDPGREPPG
Ga0170834_1141095632	3300031057	Forest Soil	MSEPPHITPKKSVERAAREARLAKALRENLVRRKGQKRAQDRQAVTQSEETDLEREPPA
Ga0170824_1021807392	3300031231	Forest Soil	MSEPPHITPKKSVERAAREARLAKALRENLVRRKGQKRAQDRQAVTQSKETDPEREPPA
Ga0170824_1106198972	3300031231	Forest Soil	MSQPPHITPKKSAERAAREARLAKALRENLVRRKEQKRAQEQRAVAQSDAPNPGREPPG
Ga0170820_117241442	3300031446	Forest Soil	MSEPPHITPKKSVERAAREARLAKALRENLVRRKGQKRAQDRQAVTQSKETDLEREPPA
Ga0170818_1135730603	3300031474	Forest Soil	LSLHRRMSEPPHITPKKSVERAAREARLAKALRENLVRRKGQKRAQGRPAVAESNETNPEREPPA
Ga0318516_100229931	3300031543	Soil	MSEPPRITPKKSLERAAREARLAKALRENLVRRKEQKRAQARRAVAQSQRTDPEREPPA
Ga0318516_100953861	3300031543	Soil	PLDSGAALSLHRGMSELPIITPQKMVERAAREARLAKALRDNLVRRKQQKRAHEGRAARQPQGTDREDEPPA
Ga0318516_101594581	3300031543	Soil	MRELPIITPKKSVERAAREARLAKALRENLVRRKEQKRAQEGRAVRQPQGTDREDEPPA
Ga0318516_105208641	3300031543	Soil	MSATPIITPKKSVERAAREARLAKALRENLVRRKEQKRAQEGQRVPQSRSPDRKREPPA
Ga0318534_100971242	3300031544	Soil	MSDSPIITPKKSVERAAREARLAKALRENLVRRKEQKRAQEGRTVPQSQAPGRKREPPA
Ga0318534_101920792	3300031544	Soil	MSELPIITPQKMVERAAREARLAKALRDNLVRRKQQKRAHEGRAARQPQGTDREDEPPA
Ga0318541_104820112	3300031545	Soil	MSVTPTITPKKSVERAAREARLAKALRENLVRRKAQKRAQEGRTVPQSQTPDPK
Ga0318538_100409291	3300031546	Soil	MRGAPIITPKKSVEREAREARLAKALRENLVRRKEQKRAQEGRTVPQSQPSGRKREPPA
Ga0318571_101808841	3300031549	Soil	SLHRGMRELPIITPKKSVERAAREARLAKALRENLVRRKEQKRAQEGRAVRQPQGTDREDEPPA
Ga0318528_100230813	3300031561	Soil	MSVTPTITPKKSVERAAREARLAKALRENLVRRKAQKRAQEGRTVPQSQTPDPKREPPA
Ga0318515_105205152	3300031572	Soil	MRELPIITPKKRVERAAREARLAKALRENLVRRKEQKRAQEGRAVRQPQG
Ga0310915_100350273	3300031573	Soil	MTPEKSAERAAREARLAKALRENLVRRKEQKRAQDGRAVQQSQGTGREREPPA
Ga0310915_101213221	3300031573	Soil	SVERAAREARLAKALRENLVRRKAQKRAQEGRTVPQSQTPDPKREPPA
Ga0318555_106469242	3300031640	Soil	DSCAGLSLHCPMSDSPIITPKKSVERAAREARLAKALRENLVRRKEQKRAQEGRTVPQSQAPGRKREPPA
Ga0318561_100681673	3300031679	Soil	MSELPIITPQKMVERAAREARLAKALRDNLVRRKQQKCAHEGRAARQPQGTDREDEPPA
Ga0318574_100379441	3300031680	Soil	MSELPIITPKKKVERAAREARLAKALRENLVRRKEQKRAQEGRAVRQPQGTDREDEPPA
Ga0318574_105611092	3300031680	Soil	MRELPIITPKKSVERAAREARLAKALRENLVRRKEQKRAQEGLAVRQPQGTDRE
Ga0318572_105815591	3300031681	Soil	LLDSCAALPLHHRMSVTPTITPKKSVERAAREARLAKALRENLVRRKAQKRAQEGRTVPQSQTPDPKREPPA
Ga0306917_106679222	3300031719	Soil	IITPKKSVERAAREARLAKALRENLVRRKEQKRAQEGQRVPQSRSPDRKREPPA
Ga0306917_107307522	3300031719	Soil	MREPPRIATRKSVERVAREARLAKALRENLVRRKEQKRAQDQQAVQHAQGTDREREPPA
Ga0318500_104569742	3300031724	Soil	PIITPKKSVERAAREARLAKALRENLVRRKEQKRAQEGRAVRQPQGTDREDEPPA
Ga0306918_105667411	3300031744	Soil	MSELPNITSKKSIKRAAREARLAKALRDNLVRRKEQKRAQDRRAVPQSEETDWEREPPA
Ga0318502_101927902	3300031747	Soil	RITPKKSLERAAREARLAKALRENLVRRKEQKRAQARRAVAQSQRTDPEREPPA
Ga0318502_103393772	3300031747	Soil	HCPMSDSPIITPKKSVERAAREARLAKALRENLVRRKEQKRAQEGRTVPQSQAPGRKREPPA
Ga0307477_1000184313	3300031753	Hardwood Forest Soil	MSEPPRITPKKSIEQAAREARLAKALRENLLRRKEQKRAQDRRPVPQSQATDPEREPPA
Ga0307475_101894391	3300031754	Hardwood Forest Soil	PKKSIEQAAREARLAKALRENLLRRKEQKRAQDRRPVPQSQATDPEREPPA
Ga0307475_115722821	3300031754	Hardwood Forest Soil	MSEPPRIAARKSIERAAREAKLAKALRENLVRRKEQKRAQDRPAVRQSEETDPESEPPA
Ga0318521_109432441	3300031770	Soil	MRELPIITPKKSVERAAREARLAKALRENLVRRKEQKRAQEGRAVRQPQG
Ga0318523_101843791	3300031798	Soil	LPLHHRMRGAPIITPKKSVEREAREARLAKALRENLVRRKEQKRAQEGRTVPQSQPSGRKREPPA
Ga0318523_103873091	3300031798	Soil	IITPKKSVERAAREARLAKALRENLVRRKEQKRAQEGRTVPQSQAPGRKREPPA
Ga0310917_101862372	3300031833	Soil	ITPKKSVERAAREARLAKALRENLVRRKEQKRAQEGRTVPQSQAPGRKREPPA
Ga0318527_102965091	3300031859	Soil	ILDSGVALPLHHRMRGAPIITPKKSVEREAREARLAKALRENLVRRKEQKRAQEGRTVPQSQPSGRKREPPA
Ga0306925_117717501	3300031890	Soil	MSEPPRITPKKSVERAAREARLAKALRENLVRRKEQKRAQDRRAVQQSQETDRE
Ga0318536_100435834	3300031893	Soil	HRMRGAPIITPKKSVEREAREARLAKALRENLVRRKEQKRAQEGRTVPQSQPSGRKREPP
Ga0318536_101621092	3300031893	Soil	MSELPIITPQKMVERAAREARLAKALRDNLVRRKEQKRAQEGRAARQPQGRDREDEPPA
Ga0318522_102939861	3300031894	Soil	LLDSCAALPLHHRMSATPIITPKKSVERAAREARLAKALRENLVRRKEQKRAQEGQRVPQSRSPDRKREPPA
Ga0318551_108935932	3300031896	Soil	SVERAAREARLAKALRENLVRRKEQKRAQEGRAVRQPQGTDREDEPPA
Ga0310916_111013562	3300031942	Soil	REMSELPNITSKKSIKRAAREARLAKALRDNLVRRKEQKRAQDRRAVPQSEETDWEREPP
Ga0310909_100975691	3300031947	Soil	PLDSCAALSLHRGMRELPIITPKKSVERAAREARLAKALRDNLVRRKQQKCAHEGRAARQPQGTDREDEPPA
Ga0318531_103026742	3300031981	Soil	DSPIITPKKSVERAAREARLAKALRENLVRRKEQKRAQEGRTVPQSQAPGRKREPPA
Ga0318549_103655352	3300032041	Soil	PKKSVERAAREARLAKALRENLVRRKEQKRAQEGRTVPQSQAPGRKREPPA
Ga0318532_100551241	3300032051	Soil	PLHCGMSEPPRITPKKSLERAAREARLAKALRENLVRRKEQKRAQARRAVAQSQRTDPEREPPA
Ga0318532_103622531	3300032051	Soil	MSELPIITPQKMVERAAREARLAKALRENLVRRKEQKRAQEGRAVRQPQGTDRE
Ga0318510_104992601	3300032064	Soil	MSELPIITPQKMVERAAREARLAKALRDNLVRRKEQKRAQEGRAARQPQGTDR
Ga0318518_102602731	3300032090	Soil	CAALSLHRGMRELPIITPKKSVERAAREARLAKALRENLVRRKEQKRAQEGRAVRQPQGTDREDEPPA
Ga0318540_104385411	3300032094	Soil	KKSVERAAREARLAKALRDNLVRRKGQQRAQGRRAVAQPRETDPEREPPA
Ga0306920_1035913671	3300032261	Soil	DGVAARLWHPRMREPPRIATRKSVERVAREARLAKALRENLVRRKEQKRAQDQQAVQHAQGTDREREPPA
Ga0348332_100460081	3300032515	Plant Litter	MSEPPRIAARKSIERAAREAKLAKALRENLVRRKEQKRAQDRRAVRQTQETDPESEPPA
Ga0310914_113939832	3300033289	Soil	MREPPRIAARKSVERVAREARLAKALRENLVRRKEQKRAQDQRAVQHLQGTDRDREPPA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093045

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences