NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F093044

Metagenome / Metatranscriptome Family F093044

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F093044
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 48 residues
Representative Sequence VPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALAARLSQ
Number of Associated Samples 78
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 98.04 %
% of genes near scaffold ends (potentially truncated) 95.28 %
% of genes from short scaffolds (< 2000 bps) 89.62 %
Associated GOLD sequencing projects 77
AlphaFold2 3D model prediction Yes
3D model pTM-score0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (74.528 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(64.151 % of family members)
Environment Ontology (ENVO) Unclassified
(70.755 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(66.038 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70
1AF_2010_repII_A1DRAFT_100521283
2Ga0066388_1078352661
3Ga0008090_157984061
4Ga0070708_1020697042
5Ga0070707_1013233732
6Ga0126373_131122392
7Ga0126370_122487851
8Ga0126376_121033611
9Ga0126372_117096621
10Ga0126379_118483422
11Ga0126379_135486002
12Ga0126381_1000972201
13Ga0126381_1045031492
14Ga0126383_108371971
15Ga0137371_106354911
16Ga0126369_100455741
17Ga0126369_121607051
18Ga0126369_124713542
19Ga0132257_1018004951
20Ga0182033_102243364
21Ga0182037_107800152
22Ga0182038_104059803
23Ga0187817_105213611
24Ga0187805_106026541
25Ga0213874_100904461
26Ga0210402_108344462
27Ga0126371_120494742
28Ga0213851_11424432
29Ga0209465_102564332
30Ga0209380_101920691
31Ga0209415_103151571
32Ga0170824_1186978521
33Ga0318571_100445021
34Ga0318573_101978482
35Ga0318515_105378141
36Ga0318542_104873222
37Ga0318561_102379981
38Ga0318561_108221861
39Ga0318560_100940471
40Ga0318560_106135972
41Ga0306917_109697222
42Ga0318493_100243181
43Ga0318493_107163271
44Ga0318500_100661691
45Ga0318500_100730684
46Ga0318501_102061381
47Ga0318501_103884351
48Ga0318492_101409213
49Ga0318492_102069892
50Ga0318494_100866874
51Ga0318494_101751463
52Ga0318494_102845813
53Ga0318494_105140232
54Ga0318494_106440051
55Ga0318509_103134371
56Ga0318546_101391984
57Ga0318508_11175501
58Ga0318547_107269011
59Ga0318547_110341882
60Ga0318552_101416963
61Ga0318529_103722351
62Ga0318529_104353022
63Ga0318557_104988641
64Ga0318550_102599081
65Ga0318497_106640522
66Ga0318567_102242791
67Ga0318567_103278842
68Ga0307478_112221021
69Ga0318499_100693093
70Ga0318511_101410141
71Ga0318511_105036642
72Ga0318495_103891052
73Ga0318522_100351693
74Ga0318522_100354824
75Ga0318522_101601472
76Ga0318522_103100471
77Ga0318551_102984891
78Ga0318520_100458584
79Ga0318520_100831004
80Ga0310916_104579401
81Ga0310910_104627382
82Ga0306926_111327502
83Ga0306926_118514161
84Ga0318530_103881831
85Ga0306922_114257661
86Ga0318562_102259753
87Ga0318563_100130301
88Ga0318563_104244662
89Ga0318507_100404854
90Ga0310911_106255171
91Ga0318549_103884691
92Ga0318556_104733392
93Ga0318556_106449451
94Ga0318570_101342532
95Ga0318570_103481972
96Ga0318533_107414931
97Ga0318505_101398793
98Ga0318505_103624112
99Ga0318504_105266152
100Ga0318524_106827451
101Ga0318553_103755202
102Ga0306920_1026724572
103Ga0335078_100670831
104Ga0310914_101336431
105Ga0310914_105521822
106Ga0318519_105710772
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 59.21%    β-sheet: 0.00%    Coil/Unstructured: 40.79%
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Variant

51015202530354045VPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALAARLSQSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
25.5%74.5%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Watersheds
Freshwater Sediment
Vadose Zone Soil
Tropical Forest Soil
Peatlands Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Soil
Tropical Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Arabidopsis Rhizosphere
Plant Roots
Tropical Rainforest Soil
12.3%64.2%7.5%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AF_2010_repII_A1DRAFT_1005212833300000597Forest SoilVPIRLRVALVFALALAIAFVLGGWLFISQLSAAMLRSTDSAL
Ga0066388_10783526613300005332Tropical Forest SoilVPIRLRVALVFALALAIAFALGGWLLISQLSAANLRTTDSALA
Ga0008090_1579840613300005363Tropical Rainforest SoilVPIRLRVALVFALALAIAFVLGGWLFISQLSAAMLRSTDSALAAR
Ga0070708_10206970423300005445Corn, Switchgrass And Miscanthus RhizosphereVPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALSARLSQASRYAEDD
Ga0070707_10132337323300005468Corn, Switchgrass And Miscanthus RhizosphereLSIRLRVALVFALALAIAFTLAGWLFLSQLSAAMLRSTDAAL
Ga0126373_1311223923300010048Tropical Forest SoilVSIRLRVALVFTLALAAAFTLGGWLFVSQLSAAMLRSTDA
Ga0126370_1224878513300010358Tropical Forest SoilVRVSIRLRVALVFALALAMAFALGGWLFVNQLSAAMLRSTDA
Ga0126376_1210336113300010359Tropical Forest SoilVPIRLRVALVFALALAIAFLLGGWLFISQLSAAMLRSTDSAL
Ga0126372_1170966213300010360Tropical Forest SoilMALVFALALAIAFALGGWLFISQLSAAMLRSTDSALAARLSQVSHDPEGETTPVATLPPGGP
Ga0126379_1184834223300010366Tropical Forest SoilMALVFALALAIAFALGGWLFLSQLSAAMLRSTDSALAARLSQVRSDPEGETTPVAT
Ga0126379_1354860023300010366Tropical Forest SoilVPIRLRVALVFALALAMAFALGGWLFVNQLSAAMLRSTDAALATRL
Ga0126381_10009722013300010376Tropical Forest SoilVSIRLRVAVVFTLALAAAFALGGWLFVSQLSAAMLRSTDATLAARLSQASRYTA
Ga0126381_10450314923300010376Tropical Forest SoilMSIRLRVAVVFTLALAAAFTLGGWLFVSQLSAAMLRSTDAALAARLSQASR
Ga0126383_1083719713300010398Tropical Forest SoilVPIRLRVALVFALALAIAFVLGGWLFISHLSAAMLRSTDSALAARLSQVGHD
Ga0137371_1063549113300012356Vadose Zone SoilVPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALAARLSQAGRYAEDDGNP
Ga0126369_1004557413300012971Tropical Forest SoilMALVFALALAIAFALGGWLFLSQLSAAMLRSTDSALAARLSQVSHDPEGETTPVTA
Ga0126369_1216070513300012971Tropical Forest SoilMSIRLRVALVFALALAIAFTLGGWLFLSQLSAAMLR
Ga0126369_1247135423300012971Tropical Forest SoilVSIRLRVALVFALALAVAFALGGWLFVSQLSATMMRSTDAALSARLNQVGRY
Ga0132257_10180049513300015373Arabidopsis RhizosphereMPIRLRVALVFALALAAAFALGGWLFISQLSVAMLKST
Ga0182033_1022433643300016319SoilVSIRLRVALVFALALAVAFALGSWLFVNQLSAAMLRSTDATLAARLNQA
Ga0182037_1078001523300016404SoilVPIRLRVALVFALALAIAFALGGWLFISQLSAANLRTTDSALAARLSQV
Ga0182038_1040598033300016445SoilVSIRLRVALVFALALAVALALGGWLFVSQLSDAMLRSTDAALAARL
Ga0187817_1052136113300017955Freshwater SedimentVSIKLRVAVVFTLALAIAFVLGSWLFITQLSAQLRSATD
Ga0187805_1060265413300018007Freshwater SedimentMSIRLRVALVFTVALGVAFALGSWLLVSRLHGQLIQGTDNALA
Ga0213874_1009044613300021377Plant RootsVPIRLRVALVFALALSVAFALGGWLFVSRLSAAMLNSTDAALAARLSQVGRYTE
Ga0210402_1083444623300021478SoilMSIRLRVALVFALALAIAFTLGGWLFLSRLSAAMLNSTDATLAARLAQATRY
Ga0126371_1204947423300021560Tropical Forest SoilMPIRLRVALVFALALAAAFALGGWLFVSQLGAAMLKSTDAALAARLAQASR
Ga0213851_114244323300021860WatershedsVPIRLRVALVFALALTVAFALGGWLFVSQLSAAMLKSTDAALAV
Ga0209465_1025643323300027874Tropical Forest SoilMPIRLRVALVFALALAAAFALGGWLFVSQLGAAMLKSTDAALA
Ga0209380_1019206913300027889SoilVPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALAARLSQAGRYTE
Ga0209415_1031515713300027905Peatlands SoilMSIRLRVALVFTLALAVAVALGSWLFISLLAAQLRSSTDAALRTQL
Ga0170824_11869785213300031231Forest SoilVPIRLRVALVFALALTVAFALGGWLFVSQLSAAMLKSTDAALAIRLSQAGRYSEDD
Ga0318571_1004450213300031549SoilVPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLR
Ga0318573_1019784823300031564SoilVSIRLRVALVFALALAIAYALASWLLIGQLSAAMLRSTDATLAARLTQSARSSDS
Ga0318515_1053781413300031572SoilMSIRLRVALVFALALAIAFTLGGWLFLSRLSAAMLKTTDATLAARLAQASRYT
Ga0318542_1048732223300031668SoilVPIRLRMALVFALALAIAFALGGWLFLSQLSAATLRSTDSALAARLNQ
Ga0318561_1023799813300031679SoilVSIRLRVALVFALALAIAFVLGGWLFISQLSAAMLRSTDSALAAIGVVSP
Ga0318561_1082218613300031679SoilVPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRST
Ga0318560_1009404713300031682SoilVPIRLRVALVFALALAIAFVLGGWLFISQLSAAMLRSTDSALAARLSQVGHDPEGETTPIAAV
Ga0318560_1061359723300031682SoilMSIRLRVALVFALALAIAFTLGGWLFLSRLSAAMLKTTDAT
Ga0306917_1096972223300031719SoilVPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALAARLSQVGRYTEDDENP
Ga0318493_1002431813300031723SoilVPIRLRMALVFALALAIAFALGGWLFLSQLSAATLRSTDSALAARLLQAGRDPESETAP
Ga0318493_1071632713300031723SoilVSIRLRVALVFALALAVAFALGGWLFISQLSAAMLRTTDASL
Ga0318500_1006616913300031724SoilVPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALAARLSQVGRYTED
Ga0318500_1007306843300031724SoilMSIRLRVALVFALALAVAFTLGGWLFLSQLSAAMLRTT
Ga0318501_1020613813300031736SoilVPIRLRMALVFALALAIAFALAGWLFLSQLSAATLRSTDSD
Ga0318501_1038843513300031736SoilMSIRLRVALVFALALAIAFTLGGWLFLSRLSAAMLRT
Ga0318492_1014092133300031748SoilMSIRLRVAVVFALALAIAFTLGGWLFLSRLSAAMLKTTDATLAARLAQASRYTADD
Ga0318492_1020698923300031748SoilVSIRLRVALVFALALAVAFALGGWLFISQLSAAMLRTTDASLAARLSQ
Ga0318494_1008668743300031751SoilVPIRLRMALVFALALAIAFALGGWLLITQLSAANLRTT
Ga0318494_1017514633300031751SoilVPIRLRVALVFALALAIAFALGGWLFISQLSTANLRTTDSALAVRLSQV
Ga0318494_1028458133300031751SoilVSIRLRVALVFALALAVAFALGSWLFVSQLSAAMLKS
Ga0318494_1051402323300031751SoilVSIRLRVALVFALALAIVLALGGWLFVSRLSAAMLRTTDANLAVRVT
Ga0318494_1064400513300031751SoilVSIRLRVALVFALALAIVLALGGWLFIRQLSGAMLRT
Ga0318509_1031343713300031768SoilVPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRS
Ga0318546_1013919843300031771SoilMSIRLRVAVVFALALAIAFTLGGWLFLSRLSAAMLKTTDATLAARLAQASRYT
Ga0318508_111755013300031780SoilVPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALASRLSQVGRYTEDDQSPRSPA
Ga0318547_1072690113300031781SoilVPIRLRVALVFALALAIAFALGGWLFISQLSTANLRTTD
Ga0318547_1103418823300031781SoilMSIRLRVALVFALALAIAFTLGGWLFLSRLSAAMLRTTDAALTAR
Ga0318552_1014169633300031782SoilVSIRLRVALVFALALAIAFVLGGWLFISQLSAAMLRSTDSALAARLSQVGHDPEG
Ga0318529_1037223513300031792SoilVSIRLRVALVFALALAIVLALGSWLFISQLSAAMLRATDAALHVRLNQGVRSS
Ga0318529_1043530223300031792SoilVPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALAARLSQ
Ga0318557_1049886413300031795SoilMSIRLRVALVFALALAVAFTLGGWLFLSQLSAAMLRTTDAN
Ga0318550_1025990813300031797SoilVPIRLRVALVFALALAIAFALGGWLFISQLSAAMLRSTDSALAARLSQVSRDPEGETAPVAA
Ga0318497_1066405223300031805SoilVPIRLRVALVFALALAIAFVLGGWLFISQLSAAMLRSTDSALAARLSQVGHDPEGETT
Ga0318567_1022427913300031821SoilVSIRLRVALVFALALAIAYALASWLLIGQLSAAMLRST
Ga0318567_1032788423300031821SoilMSIRLRVALVFALALAIAFTLGGWLFLSRLSAAMLRTTDAALTARLT
Ga0307478_1122210213300031823Hardwood Forest SoilMPIRLRVALVFALALAIAFTLGGWLFISQLSAAMLRTTDAALAARLTQASRYTADDEEG
Ga0318499_1006930933300031832SoilVPIRLRVALVFALALAIAFALGGWLFISQLSAAMLRSTDSALAARLSQVSRDPE
Ga0318511_1014101413300031845SoilMSIRLRVAVVFALALAIAFTLGGWLFLSRLSAAMLKTTDATLAARLAQ
Ga0318511_1050366423300031845SoilVPIRLRVALVFALALAIAFVLGGWLFISQLSAAMLRSTDSALAARLSQVG
Ga0318495_1038910523300031860SoilVPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLKSTDTALAARLSQVGRY
Ga0318522_1003516933300031894SoilVPIRLRVALVFALALAIAFVLGGWLFISQLSAAMLRSTDSALAARLSQVGHDPEGETTR
Ga0318522_1003548243300031894SoilVPIRLRVALVFALALAIAFALGGWLFISQLSAANLRT
Ga0318522_1016014723300031894SoilVPIRLRVALVFALALAIAFALGGWLFISQLSAANL
Ga0318522_1031004713300031894SoilVSIRLRVALVFALALAVAFALGSWLFISQLSAARLRATDAALAARV
Ga0318551_1029848913300031896SoilVPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLKSTDTALAA
Ga0318520_1004585843300031897SoilVPIRLRMALVFALALAIAFALGGWLFLSQLSAATLRSTDSALAAR
Ga0318520_1008310043300031897SoilVPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALASRLSQVGRYTEDDQ
Ga0310916_1045794013300031942SoilVPIRLRVALVFALALAIAFALGGWLFISQLSTANLR
Ga0310910_1046273823300031946SoilVPIRLRMALVFALALAIAFALGGWLFISKLSAANLRTTDSALA
Ga0306926_1113275023300031954SoilMSIRLRVAVVFALALAIAFTLGGWLFLSRLSAAMLKTTDATLAARLAQASRYTADDEE
Ga0306926_1185141613300031954SoilMSIRLRVALVFALALAIAFALGSWLFLSRLSAAMLGTTDAN
Ga0318530_1038818313300031959SoilVSIRLRVALVFALALAIVLALGGWLFIRQLSGAMLRTTDA
Ga0306922_1142576613300032001SoilVPIRLRMALVFALALAIAFALGGWLLITQLSAANLRTTDSALAARLSQVRSD
Ga0318562_1022597533300032008SoilVPIRLRMALVFALALAIAFALGGWLFLSQLSAATLR
Ga0318563_1001303013300032009SoilVPIRLRVALVFALALAIAFALGGWLFISQLSAAMLRSTDSA
Ga0318563_1042446623300032009SoilMSIRLRVALVFALALAIAFTLGGWLFLSRLSAAMLKTTDATLAARL
Ga0318507_1004048543300032025SoilVSIRLRVALVFALALAIAFVLGGWLFISQLSAAMLRSTDSALAARLSQVGHDPEGSGEQACRL
Ga0310911_1062551713300032035SoilVPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDA
Ga0318549_1038846913300032041SoilVPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLKSTDTALAARLSQVGRYTED
Ga0318556_1047333923300032043SoilVPIRLRMALVFALALAIAFALGGWLFLSQLSAAMLRSTDSALAARLSQVSHDPEGETTPVTA
Ga0318556_1064494513300032043SoilVSIRLRVALVFALALAIAFTLGSWLFLSRLSAAMLGTTDANLAARLTQAT
Ga0318570_1013425323300032054SoilVSIRLRVALVFALALAIAFVLGGWLFISQLSAAMLRSTDSALAARLSQVGHDPEGETTPIAAVT
Ga0318570_1034819723300032054SoilMSIRLRVAVVFALALAIAFTLGGWLFLSRLSAAMLKTTDATLAA
Ga0318533_1074149313300032059SoilVSIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALASRLSQVG
Ga0318505_1013987933300032060SoilVSIRLRVALVFALALAIAFVLGGWLFINQLSAAMLRSTDSALAARLSQVGHDPEGETT
Ga0318505_1036241123300032060SoilVPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALASRLSQVGRY
Ga0318504_1052661523300032063SoilMSIRLRVALVFALALAVAFTLGGWLFLSQLSAAMLRTTDANLTARLSQGRAAED
Ga0318524_1068274513300032067SoilVSIRLRVALVFALALAIAYALASWLLIGQLSAAMLRSTDATLAARLT
Ga0318553_1037552023300032068SoilVSIRLRVALVFALALAIAYALASWLLIGQLSAAMLRSTDATLAARLTQSARSSD
Ga0306920_10267245723300032261SoilVSIRLRVALVFALALAIAFALGSWLFISQLSAAMLR
Ga0335078_1006708313300032805SoilVPIRLRVALVFVAALAVAFALGGWLFYSRLSASLLNATDAALAARLSQAGRYLP
Ga0310914_1013364313300033289SoilVPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALASRLS
Ga0310914_1055218223300033289SoilVSIRLRVALVFALALAIAFVLGGWLFISQLSAAMLRSTDSALAARLSQVGHDPEGETTPI
Ga0318519_1057107723300033290SoilVPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALASRLSQVGRYTEDDQSP


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