Metagenome / Metatranscriptome Family F093044

Overview

Basic Information

• Family ID: F093044
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 106
• Average Sequence Length: 48 residues
• Representative Sequence: VPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALAARLSQ
• Number of Associated Samples: 78
• Number of Associated Scaffolds: 106

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 98.04 %
• % of genes near scaffold ends (potentially truncated): 95.28 %
• % of genes from short scaffolds (< 2000 bps): 89.62 %
• Associated GOLD sequencing projects: 77
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (74.528 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (64.151 % of family members)
• Environment Ontology (ENVO): Unclassified (70.755 % of family members)
• Earth Microbiome Project Ontology (EMPO): Unclassified (66.038 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 59.21%
  β-sheet: 0.00%
  Coil/Unstructured: 40.79%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00486	Trans_reg_C	93.40
PF02424	ApbE	2.83
PF01512	Complex1_51K	1.89
PF01794	Ferric_reduct	0.94
PF14417	MEDS	0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1477	FAD:protein FMN transferase ApbE	Posttranslational modification, protein turnover, chaperones [O]	2.83
COG1894	NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F)	Energy production and conversion [C]	1.89
COG4656	Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit	Energy production and conversion [C]	1.89

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.53 %
All Organisms	root	All Organisms	25.47 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.53 %
cellular organisms	root	All Organisms → cellular organisms	25.47 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.53 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	25.47 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.53 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	25.47 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.53 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	25.47 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.53 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11.32 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.53 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	6.60 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.94 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.53 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.60 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.94 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.53 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.60 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.94 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000597|AF_2010_repII_A1DRAFT_10052128	Not Available	1061
3300005332|Ga0066388_107835266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	535
3300005363|Ga0008090_15798406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	668
3300005445|Ga0070708_102069704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	527
3300005468|Ga0070707_101323373	Not Available	687
3300010048|Ga0126373_13112239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	517
3300010358|Ga0126370_12248785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	538
3300010359|Ga0126376_12103361	Not Available	608
3300010366|Ga0126379_13548600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	522
3300010376|Ga0126381_100097220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3749
3300010376|Ga0126381_104503149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	538
3300010398|Ga0126383_10837197	Not Available	1004
3300012356|Ga0137371_10635491	Not Available	819
3300012971|Ga0126369_10045574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3713
3300012971|Ga0126369_12160705	Not Available	644
3300012971|Ga0126369_12471354	Not Available	605
3300015373|Ga0132257_101800495	Not Available	787
3300016319|Ga0182033_10224336	Not Available	1511
3300016404|Ga0182037_10780015	Not Available	823
3300016445|Ga0182038_10405980	Not Available	1143
3300017955|Ga0187817_10521361	Not Available	758
3300018007|Ga0187805_10602654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	519
3300021377|Ga0213874_10090446	Not Available	1005
3300021478|Ga0210402_10834446	Not Available	847
3300021560|Ga0126371_12049474	Not Available	689
3300021860|Ga0213851_1142443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	604
3300027874|Ga0209465_10256433	Not Available	875
3300027889|Ga0209380_10192069	Not Available	1199
3300027905|Ga0209415_10315157	Not Available	1335
3300031231|Ga0170824_118697852	Not Available	507
3300031549|Ga0318571_10044502	Not Available	1299
3300031564|Ga0318573_10197848	Not Available	1065
3300031572|Ga0318515_10537814	Not Available	623
3300031668|Ga0318542_10487322	Not Available	640
3300031679|Ga0318561_10237998	Not Available	991
3300031679|Ga0318561_10822186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	510
3300031682|Ga0318560_10094047	Not Available	1543
3300031682|Ga0318560_10613597	Not Available	589
3300031719|Ga0306917_10969722	Not Available	664
3300031723|Ga0318493_10024318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2700
3300031723|Ga0318493_10716327	Not Available	561
3300031724|Ga0318500_10066169	Not Available	1576
3300031724|Ga0318500_10073068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1511
3300031736|Ga0318501_10206138	Not Available	1030
3300031736|Ga0318501_10388435	Not Available	753
3300031748|Ga0318492_10140921	Not Available	1211
3300031748|Ga0318492_10206989	Not Available	1005
3300031751|Ga0318494_10086687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1709
3300031751|Ga0318494_10175146	Not Available	1215
3300031751|Ga0318494_10284581	Not Available	952
3300031751|Ga0318494_10514023	Not Available	698
3300031751|Ga0318494_10644005	Not Available	620
3300031768|Ga0318509_10313437	Not Available	878
3300031771|Ga0318546_10139198	Not Available	1628
3300031780|Ga0318508_1117550	Not Available	745
3300031781|Ga0318547_10726901	Not Available	617
3300031781|Ga0318547_11034188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	514
3300031782|Ga0318552_10141696	Not Available	1205
3300031792|Ga0318529_10372235	Not Available	665
3300031792|Ga0318529_10435302	Not Available	610
3300031795|Ga0318557_10498864	Not Available	559
3300031797|Ga0318550_10259908	Not Available	842
3300031805|Ga0318497_10664052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	584
3300031821|Ga0318567_10224279	Not Available	1052
3300031821|Ga0318567_10327884	Not Available	864
3300031823|Ga0307478_11222102	Not Available	626
3300031832|Ga0318499_10069309	Not Available	1339
3300031845|Ga0318511_10141014	Not Available	1049
3300031845|Ga0318511_10503664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	560
3300031860|Ga0318495_10389105	Not Available	615
3300031894|Ga0318522_10035169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1715
3300031894|Ga0318522_10035482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1709
3300031894|Ga0318522_10160147	Not Available	849
3300031894|Ga0318522_10310047	Not Available	598
3300031896|Ga0318551_10298489	Not Available	906
3300031897|Ga0318520_10045858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2275
3300031897|Ga0318520_10083100	Not Available	1764
3300031942|Ga0310916_10457940	Not Available	1086
3300031946|Ga0310910_10462738	Not Available	1007
3300031954|Ga0306926_11132750	Not Available	923
3300031954|Ga0306926_11851416	Not Available	683
3300031959|Ga0318530_10388183	Not Available	579
3300032008|Ga0318562_10225975	Not Available	1085
3300032009|Ga0318563_10013030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	3946
3300032009|Ga0318563_10424466	Not Available	719
3300032025|Ga0318507_10040485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1790
3300032035|Ga0310911_10625517	Not Available	624
3300032041|Ga0318549_10388469	Not Available	629
3300032043|Ga0318556_10644945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	552
3300032054|Ga0318570_10134253	Not Available	1100
3300032054|Ga0318570_10348197	Not Available	675
3300032059|Ga0318533_10741493	Not Available	721
3300032060|Ga0318505_10139879	Not Available	1117
3300032060|Ga0318505_10362411	Not Available	685
3300032063|Ga0318504_10526615	Not Available	567
3300032067|Ga0318524_10682745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	541
3300032068|Ga0318553_10375520	Not Available	744
3300032261|Ga0306920_102672457	Not Available	683
3300032805|Ga0335078_10067083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5257
3300033289|Ga0310914_10133643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2172
3300033289|Ga0310914_10552182	Not Available	1040
3300033290|Ga0318519_10571077	Not Available	685

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.11%
Host-Associated	Host-Associated	1.89%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.28%
Aquatic	Environmental → Aquatic	2.83%
Plants	Host-Associated → Plants	1.89%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.28%
Freshwater	Environmental → Aquatic → Freshwater	2.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.94%
Roots	Host-Associated → Plants → Roots	0.94%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	89.62%
Loam	Environmental → Terrestrial → Soil → Loam	4.72%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.89%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.94%

Subtype

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	74.53%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.15%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.94%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.94%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	64.15%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.55%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.89%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.94%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.94%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.94%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental
3300021860	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)	Environmental
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100521283	3300000597	Forest Soil	VPIRLRVALVFALALAIAFVLGGWLFISQLSAAMLRSTDSAL
Ga0066388_1078352661	3300005332	Tropical Forest Soil	VPIRLRVALVFALALAIAFALGGWLLISQLSAANLRTTDSALA
Ga0008090_157984061	3300005363	Tropical Rainforest Soil	VPIRLRVALVFALALAIAFVLGGWLFISQLSAAMLRSTDSALAAR
Ga0070708_1020697042	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALSARLSQASRYAEDD
Ga0070707_1013233732	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LSIRLRVALVFALALAIAFTLAGWLFLSQLSAAMLRSTDAAL
Ga0126373_131122392	3300010048	Tropical Forest Soil	VSIRLRVALVFTLALAAAFTLGGWLFVSQLSAAMLRSTDA
Ga0126370_122487851	3300010358	Tropical Forest Soil	VRVSIRLRVALVFALALAMAFALGGWLFVNQLSAAMLRSTDA
Ga0126376_121033611	3300010359	Tropical Forest Soil	VPIRLRVALVFALALAIAFLLGGWLFISQLSAAMLRSTDSAL
Ga0126372_117096621	3300010360	Tropical Forest Soil	MALVFALALAIAFALGGWLFISQLSAAMLRSTDSALAARLSQVSHDPEGETTPVATLPPGGP
Ga0126379_118483422	3300010366	Tropical Forest Soil	MALVFALALAIAFALGGWLFLSQLSAAMLRSTDSALAARLSQVRSDPEGETTPVAT
Ga0126379_135486002	3300010366	Tropical Forest Soil	VPIRLRVALVFALALAMAFALGGWLFVNQLSAAMLRSTDAALATRL
Ga0126381_1000972201	3300010376	Tropical Forest Soil	VSIRLRVAVVFTLALAAAFALGGWLFVSQLSAAMLRSTDATLAARLSQASRYTA
Ga0126381_1045031492	3300010376	Tropical Forest Soil	MSIRLRVAVVFTLALAAAFTLGGWLFVSQLSAAMLRSTDAALAARLSQASR
Ga0126383_108371971	3300010398	Tropical Forest Soil	VPIRLRVALVFALALAIAFVLGGWLFISHLSAAMLRSTDSALAARLSQVGHD
Ga0137371_106354911	3300012356	Vadose Zone Soil	VPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALAARLSQAGRYAEDDGNP
Ga0126369_100455741	3300012971	Tropical Forest Soil	MALVFALALAIAFALGGWLFLSQLSAAMLRSTDSALAARLSQVSHDPEGETTPVTA
Ga0126369_121607051	3300012971	Tropical Forest Soil	MSIRLRVALVFALALAIAFTLGGWLFLSQLSAAMLR
Ga0126369_124713542	3300012971	Tropical Forest Soil	VSIRLRVALVFALALAVAFALGGWLFVSQLSATMMRSTDAALSARLNQVGRY
Ga0132257_1018004951	3300015373	Arabidopsis Rhizosphere	MPIRLRVALVFALALAAAFALGGWLFISQLSVAMLKST
Ga0182033_102243364	3300016319	Soil	VSIRLRVALVFALALAVAFALGSWLFVNQLSAAMLRSTDATLAARLNQA
Ga0182037_107800152	3300016404	Soil	VPIRLRVALVFALALAIAFALGGWLFISQLSAANLRTTDSALAARLSQV
Ga0182038_104059803	3300016445	Soil	VSIRLRVALVFALALAVALALGGWLFVSQLSDAMLRSTDAALAARL
Ga0187817_105213611	3300017955	Freshwater Sediment	VSIKLRVAVVFTLALAIAFVLGSWLFITQLSAQLRSATD
Ga0187805_106026541	3300018007	Freshwater Sediment	MSIRLRVALVFTVALGVAFALGSWLLVSRLHGQLIQGTDNALA
Ga0213874_100904461	3300021377	Plant Roots	VPIRLRVALVFALALSVAFALGGWLFVSRLSAAMLNSTDAALAARLSQVGRYTE
Ga0210402_108344462	3300021478	Soil	MSIRLRVALVFALALAIAFTLGGWLFLSRLSAAMLNSTDATLAARLAQATRY
Ga0126371_120494742	3300021560	Tropical Forest Soil	MPIRLRVALVFALALAAAFALGGWLFVSQLGAAMLKSTDAALAARLAQASR
Ga0213851_11424432	3300021860	Watersheds	VPIRLRVALVFALALTVAFALGGWLFVSQLSAAMLKSTDAALAV
Ga0209465_102564332	3300027874	Tropical Forest Soil	MPIRLRVALVFALALAAAFALGGWLFVSQLGAAMLKSTDAALA
Ga0209380_101920691	3300027889	Soil	VPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALAARLSQAGRYTE
Ga0209415_103151571	3300027905	Peatlands Soil	MSIRLRVALVFTLALAVAVALGSWLFISLLAAQLRSSTDAALRTQL
Ga0170824_1186978521	3300031231	Forest Soil	VPIRLRVALVFALALTVAFALGGWLFVSQLSAAMLKSTDAALAIRLSQAGRYSEDD
Ga0318571_100445021	3300031549	Soil	VPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLR
Ga0318573_101978482	3300031564	Soil	VSIRLRVALVFALALAIAYALASWLLIGQLSAAMLRSTDATLAARLTQSARSSDS
Ga0318515_105378141	3300031572	Soil	MSIRLRVALVFALALAIAFTLGGWLFLSRLSAAMLKTTDATLAARLAQASRYT
Ga0318542_104873222	3300031668	Soil	VPIRLRMALVFALALAIAFALGGWLFLSQLSAATLRSTDSALAARLNQ
Ga0318561_102379981	3300031679	Soil	VSIRLRVALVFALALAIAFVLGGWLFISQLSAAMLRSTDSALAAIGVVSP
Ga0318561_108221861	3300031679	Soil	VPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRST
Ga0318560_100940471	3300031682	Soil	VPIRLRVALVFALALAIAFVLGGWLFISQLSAAMLRSTDSALAARLSQVGHDPEGETTPIAAV
Ga0318560_106135972	3300031682	Soil	MSIRLRVALVFALALAIAFTLGGWLFLSRLSAAMLKTTDAT
Ga0306917_109697222	3300031719	Soil	VPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALAARLSQVGRYTEDDENP
Ga0318493_100243181	3300031723	Soil	VPIRLRMALVFALALAIAFALGGWLFLSQLSAATLRSTDSALAARLLQAGRDPESETAP
Ga0318493_107163271	3300031723	Soil	VSIRLRVALVFALALAVAFALGGWLFISQLSAAMLRTTDASL
Ga0318500_100661691	3300031724	Soil	VPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALAARLSQVGRYTED
Ga0318500_100730684	3300031724	Soil	MSIRLRVALVFALALAVAFTLGGWLFLSQLSAAMLRTT
Ga0318501_102061381	3300031736	Soil	VPIRLRMALVFALALAIAFALAGWLFLSQLSAATLRSTDSD
Ga0318501_103884351	3300031736	Soil	MSIRLRVALVFALALAIAFTLGGWLFLSRLSAAMLRT
Ga0318492_101409213	3300031748	Soil	MSIRLRVAVVFALALAIAFTLGGWLFLSRLSAAMLKTTDATLAARLAQASRYTADD
Ga0318492_102069892	3300031748	Soil	VSIRLRVALVFALALAVAFALGGWLFISQLSAAMLRTTDASLAARLSQ
Ga0318494_100866874	3300031751	Soil	VPIRLRMALVFALALAIAFALGGWLLITQLSAANLRTT
Ga0318494_101751463	3300031751	Soil	VPIRLRVALVFALALAIAFALGGWLFISQLSTANLRTTDSALAVRLSQV
Ga0318494_102845813	3300031751	Soil	VSIRLRVALVFALALAVAFALGSWLFVSQLSAAMLKS
Ga0318494_105140232	3300031751	Soil	VSIRLRVALVFALALAIVLALGGWLFVSRLSAAMLRTTDANLAVRVT
Ga0318494_106440051	3300031751	Soil	VSIRLRVALVFALALAIVLALGGWLFIRQLSGAMLRT
Ga0318509_103134371	3300031768	Soil	VPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRS
Ga0318546_101391984	3300031771	Soil	MSIRLRVAVVFALALAIAFTLGGWLFLSRLSAAMLKTTDATLAARLAQASRYT
Ga0318508_11175501	3300031780	Soil	VPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALASRLSQVGRYTEDDQSPRSPA
Ga0318547_107269011	3300031781	Soil	VPIRLRVALVFALALAIAFALGGWLFISQLSTANLRTTD
Ga0318547_110341882	3300031781	Soil	MSIRLRVALVFALALAIAFTLGGWLFLSRLSAAMLRTTDAALTAR
Ga0318552_101416963	3300031782	Soil	VSIRLRVALVFALALAIAFVLGGWLFISQLSAAMLRSTDSALAARLSQVGHDPEG
Ga0318529_103722351	3300031792	Soil	VSIRLRVALVFALALAIVLALGSWLFISQLSAAMLRATDAALHVRLNQGVRSS
Ga0318529_104353022	3300031792	Soil	VPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALAARLSQ
Ga0318557_104988641	3300031795	Soil	MSIRLRVALVFALALAVAFTLGGWLFLSQLSAAMLRTTDAN
Ga0318550_102599081	3300031797	Soil	VPIRLRVALVFALALAIAFALGGWLFISQLSAAMLRSTDSALAARLSQVSRDPEGETAPVAA
Ga0318497_106640522	3300031805	Soil	VPIRLRVALVFALALAIAFVLGGWLFISQLSAAMLRSTDSALAARLSQVGHDPEGETT
Ga0318567_102242791	3300031821	Soil	VSIRLRVALVFALALAIAYALASWLLIGQLSAAMLRST
Ga0318567_103278842	3300031821	Soil	MSIRLRVALVFALALAIAFTLGGWLFLSRLSAAMLRTTDAALTARLT
Ga0307478_112221021	3300031823	Hardwood Forest Soil	MPIRLRVALVFALALAIAFTLGGWLFISQLSAAMLRTTDAALAARLTQASRYTADDEEG
Ga0318499_100693093	3300031832	Soil	VPIRLRVALVFALALAIAFALGGWLFISQLSAAMLRSTDSALAARLSQVSRDPE
Ga0318511_101410141	3300031845	Soil	MSIRLRVAVVFALALAIAFTLGGWLFLSRLSAAMLKTTDATLAARLAQ
Ga0318511_105036642	3300031845	Soil	VPIRLRVALVFALALAIAFVLGGWLFISQLSAAMLRSTDSALAARLSQVG
Ga0318495_103891052	3300031860	Soil	VPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLKSTDTALAARLSQVGRY
Ga0318522_100351693	3300031894	Soil	VPIRLRVALVFALALAIAFVLGGWLFISQLSAAMLRSTDSALAARLSQVGHDPEGETTR
Ga0318522_100354824	3300031894	Soil	VPIRLRVALVFALALAIAFALGGWLFISQLSAANLRT
Ga0318522_101601472	3300031894	Soil	VPIRLRVALVFALALAIAFALGGWLFISQLSAANL
Ga0318522_103100471	3300031894	Soil	VSIRLRVALVFALALAVAFALGSWLFISQLSAARLRATDAALAARV
Ga0318551_102984891	3300031896	Soil	VPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLKSTDTALAA
Ga0318520_100458584	3300031897	Soil	VPIRLRMALVFALALAIAFALGGWLFLSQLSAATLRSTDSALAAR
Ga0318520_100831004	3300031897	Soil	VPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALASRLSQVGRYTEDDQ
Ga0310916_104579401	3300031942	Soil	VPIRLRVALVFALALAIAFALGGWLFISQLSTANLR
Ga0310910_104627382	3300031946	Soil	VPIRLRMALVFALALAIAFALGGWLFISKLSAANLRTTDSALA
Ga0306926_111327502	3300031954	Soil	MSIRLRVAVVFALALAIAFTLGGWLFLSRLSAAMLKTTDATLAARLAQASRYTADDEE
Ga0306926_118514161	3300031954	Soil	MSIRLRVALVFALALAIAFALGSWLFLSRLSAAMLGTTDAN
Ga0318530_103881831	3300031959	Soil	VSIRLRVALVFALALAIVLALGGWLFIRQLSGAMLRTTDA
Ga0306922_114257661	3300032001	Soil	VPIRLRMALVFALALAIAFALGGWLLITQLSAANLRTTDSALAARLSQVRSD
Ga0318562_102259753	3300032008	Soil	VPIRLRMALVFALALAIAFALGGWLFLSQLSAATLR
Ga0318563_100130301	3300032009	Soil	VPIRLRVALVFALALAIAFALGGWLFISQLSAAMLRSTDSA
Ga0318563_104244662	3300032009	Soil	MSIRLRVALVFALALAIAFTLGGWLFLSRLSAAMLKTTDATLAARL
Ga0318507_100404854	3300032025	Soil	VSIRLRVALVFALALAIAFVLGGWLFISQLSAAMLRSTDSALAARLSQVGHDPEGSGEQACRL
Ga0310911_106255171	3300032035	Soil	VPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDA
Ga0318549_103884691	3300032041	Soil	VPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLKSTDTALAARLSQVGRYTED
Ga0318556_104733392	3300032043	Soil	VPIRLRMALVFALALAIAFALGGWLFLSQLSAAMLRSTDSALAARLSQVSHDPEGETTPVTA
Ga0318556_106449451	3300032043	Soil	VSIRLRVALVFALALAIAFTLGSWLFLSRLSAAMLGTTDANLAARLTQAT
Ga0318570_101342532	3300032054	Soil	VSIRLRVALVFALALAIAFVLGGWLFISQLSAAMLRSTDSALAARLSQVGHDPEGETTPIAAVT
Ga0318570_103481972	3300032054	Soil	MSIRLRVAVVFALALAIAFTLGGWLFLSRLSAAMLKTTDATLAA
Ga0318533_107414931	3300032059	Soil	VSIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALASRLSQVG
Ga0318505_101398793	3300032060	Soil	VSIRLRVALVFALALAIAFVLGGWLFINQLSAAMLRSTDSALAARLSQVGHDPEGETT
Ga0318505_103624112	3300032060	Soil	VPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALASRLSQVGRY
Ga0318504_105266152	3300032063	Soil	MSIRLRVALVFALALAVAFTLGGWLFLSQLSAAMLRTTDANLTARLSQGRAAED
Ga0318524_106827451	3300032067	Soil	VSIRLRVALVFALALAIAYALASWLLIGQLSAAMLRSTDATLAARLT
Ga0318553_103755202	3300032068	Soil	VSIRLRVALVFALALAIAYALASWLLIGQLSAAMLRSTDATLAARLTQSARSSD
Ga0306920_1026724572	3300032261	Soil	VSIRLRVALVFALALAIAFALGSWLFISQLSAAMLR
Ga0335078_100670831	3300032805	Soil	VPIRLRVALVFVAALAVAFALGGWLFYSRLSASLLNATDAALAARLSQAGRYLP
Ga0310914_101336431	3300033289	Soil	VPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALASRLS
Ga0310914_105521822	3300033289	Soil	VSIRLRVALVFALALAIAFVLGGWLFISQLSAAMLRSTDSALAARLSQVGHDPEGETTPI
Ga0318519_105710772	3300033290	Soil	VPIRLRVALVFALALAVAFALGGWLFVSQLSAAMLRSTDAALASRLSQVGRYTEDDQSP