Metagenome / Metatranscriptome Family F092951

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092951
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	74 residues
Representative Sequence	MPEVAQALAFLSALLMVISFAIWSKWLGGPLLQRLDGQRASNAAPAALAIKLLMAAFGVSVVAAVLAIGGWISP
Number of Associated Samples	75
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.42 %
% of genes near scaffold ends (potentially truncated)	28.97 %
% of genes from short scaffolds (< 2000 bps)	83.18 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.131 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (23.364 % of family members)
Environment Ontology (ENVO)	Unclassified (57.009 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (76.636 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 63.73% β-sheet: 0.00% Coil/Unstructured: 36.27%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00072	Response_reg	28.04
PF08448	PAS_4	13.08
PF13581	HATPase_c_2	2.80
PF00313	CSD	1.87
PF00106	adh_short	0.93
PF00202	Aminotran_3	0.93
PF01152	Bac_globin	0.93
PF05013	FGase	0.93
PF13489	Methyltransf_23	0.93
PF10276	zf-CHCC	0.93
PF13751	DDE_Tnp_1_6	0.93
PF00115	COX1	0.93
PF02739	5_3_exonuc_N	0.93
PF02518	HATPase_c	0.93
PF01243	Putative_PNPOx	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	Replication, recombination and repair [L]	0.93
COG2346	Truncated hemoglobin YjbI	Inorganic ion transport and metabolism [P]	0.93
COG3741	N-formylglutamate amidohydrolase	Amino acid transport and metabolism [E]	0.93
COG3931	Predicted N-formylglutamate amidohydrolase	Amino acid transport and metabolism [E]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.13 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.13 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.13 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	79.44 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	76.64 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	60.75 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	60.75 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	30.84 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	1.87 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	1.87 %
Sphingomonas sp. URHD0007	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886012\|MBSR1b_contig_1330998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	887	Open in IMG/M
3300002067\|JGI24735J21928_10030071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1614	Open in IMG/M
3300002459\|JGI24751J29686_10041024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	958	Open in IMG/M
3300003322\|rootL2_10352994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1562	Open in IMG/M
3300004114\|Ga0062593_100623536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1034	Open in IMG/M
3300004114\|Ga0062593_103404836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	510	Open in IMG/M
3300004479\|Ga0062595_102660805	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300004480\|Ga0062592_102013999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	571	Open in IMG/M
3300004643\|Ga0062591_100048415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2403	Open in IMG/M
3300005093\|Ga0062594_100128393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1600	Open in IMG/M
3300005093\|Ga0062594_101553073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	682	Open in IMG/M
3300005293\|Ga0065715_10397502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	886	Open in IMG/M
3300005327\|Ga0070658_10020519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5296	Open in IMG/M
3300005327\|Ga0070658_10034081	All Organisms → cellular organisms → Bacteria	4096	Open in IMG/M
3300005327\|Ga0070658_10141595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	2009	Open in IMG/M
3300005327\|Ga0070658_10190927	All Organisms → cellular organisms → Bacteria	1726	Open in IMG/M
3300005327\|Ga0070658_10252153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1497	Open in IMG/M
3300005327\|Ga0070658_11509466	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300005329\|Ga0070683_101441830	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300005331\|Ga0070670_101802026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	563	Open in IMG/M
3300005336\|Ga0070680_100318610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1320	Open in IMG/M
3300005339\|Ga0070660_100005589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8716	Open in IMG/M
3300005339\|Ga0070660_100062068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2902	Open in IMG/M
3300005344\|Ga0070661_101388586	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300005353\|Ga0070669_101000131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	717	Open in IMG/M
3300005366\|Ga0070659_100226442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1544	Open in IMG/M
3300005366\|Ga0070659_100640819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	916	Open in IMG/M
3300005366\|Ga0070659_101035295	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300005367\|Ga0070667_100023848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	5080	Open in IMG/M
3300005435\|Ga0070714_100068265	All Organisms → cellular organisms → Bacteria → Proteobacteria	3067	Open in IMG/M
3300005455\|Ga0070663_101943296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	529	Open in IMG/M
3300005457\|Ga0070662_101359497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	612	Open in IMG/M
3300005530\|Ga0070679_100465633	All Organisms → cellular organisms → Bacteria	1208	Open in IMG/M
3300005530\|Ga0070679_100771970	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300005534\|Ga0070735_10192429	All Organisms → cellular organisms → Bacteria	1251	Open in IMG/M
3300005539\|Ga0068853_102314643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	520	Open in IMG/M
3300005543\|Ga0070672_101769632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	555	Open in IMG/M
3300005547\|Ga0070693_100138351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1530	Open in IMG/M
3300005563\|Ga0068855_100067417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4169	Open in IMG/M
3300005563\|Ga0068855_100879790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	947	Open in IMG/M
3300005564\|Ga0070664_100315261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1416	Open in IMG/M
3300005564\|Ga0070664_101012777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	781	Open in IMG/M
3300005564\|Ga0070664_101323105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	681	Open in IMG/M
3300005575\|Ga0066702_10491027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	748	Open in IMG/M
3300005578\|Ga0068854_100089741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	2285	Open in IMG/M
3300005614\|Ga0068856_100718733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1019	Open in IMG/M
3300005616\|Ga0068852_100424771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1311	Open in IMG/M
3300005616\|Ga0068852_102271555	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300005834\|Ga0068851_10268636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	972	Open in IMG/M
3300005843\|Ga0068860_101505183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	695	Open in IMG/M
3300006881\|Ga0068865_101617104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	583	Open in IMG/M
3300009545\|Ga0105237_10440830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1308	Open in IMG/M
3300009545\|Ga0105237_12338963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	544	Open in IMG/M
3300009551\|Ga0105238_12048340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	606	Open in IMG/M
3300012212\|Ga0150985_117381117	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300012469\|Ga0150984_104838704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	540	Open in IMG/M
3300012989\|Ga0164305_11574361	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300013100\|Ga0157373_10326966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1091	Open in IMG/M
3300013100\|Ga0157373_10858404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	672	Open in IMG/M
3300013102\|Ga0157371_10676842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	771	Open in IMG/M
3300013104\|Ga0157370_10086163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2951	Open in IMG/M
3300013297\|Ga0157378_10599833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1112	Open in IMG/M
3300014497\|Ga0182008_10124412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1283	Open in IMG/M
3300014497\|Ga0182008_10170189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1100	Open in IMG/M
3300014497\|Ga0182008_10654202	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300015371\|Ga0132258_11785702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1550	Open in IMG/M
3300015374\|Ga0132255_100278905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	2398	Open in IMG/M
3300015374\|Ga0132255_105827834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	521	Open in IMG/M
3300020076\|Ga0206355_1696948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1007	Open in IMG/M
3300021445\|Ga0182009_10167959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1052	Open in IMG/M
3300025321\|Ga0207656_10136666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1152	Open in IMG/M
3300025321\|Ga0207656_10498683	Not Available	618	Open in IMG/M
3300025904\|Ga0207647_10018716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4676	Open in IMG/M
3300025904\|Ga0207647_10051246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	2552	Open in IMG/M
3300025904\|Ga0207647_10215176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1109	Open in IMG/M
3300025909\|Ga0207705_10003845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	11426	Open in IMG/M
3300025909\|Ga0207705_10095693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2179	Open in IMG/M
3300025909\|Ga0207705_10122850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1928	Open in IMG/M
3300025914\|Ga0207671_10163147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1726	Open in IMG/M
3300025923\|Ga0207681_10930825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	728	Open in IMG/M
3300025925\|Ga0207650_10316124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1278	Open in IMG/M
3300025932\|Ga0207690_10676441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	847	Open in IMG/M
3300025932\|Ga0207690_11102734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	662	Open in IMG/M
3300025945\|Ga0207679_10289402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1408	Open in IMG/M
3300025945\|Ga0207679_12166024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	505	Open in IMG/M
3300025960\|Ga0207651_11593932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	588	Open in IMG/M
3300025981\|Ga0207640_11049442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	719	Open in IMG/M
3300026078\|Ga0207702_11519051	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300026078\|Ga0207702_12215291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	538	Open in IMG/M
3300026095\|Ga0207676_12113778	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300026095\|Ga0207676_12513426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	512	Open in IMG/M
3300026142\|Ga0207698_10496668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1187	Open in IMG/M
3300028608\|Ga0247819_10512561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	711	Open in IMG/M
3300028889\|Ga0247827_10119690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1353	Open in IMG/M
3300028889\|Ga0247827_11001249	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300031538\|Ga0310888_10095066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1504	Open in IMG/M
3300031562\|Ga0310886_10061370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1746	Open in IMG/M
3300031847\|Ga0310907_10578204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	610	Open in IMG/M
3300031892\|Ga0310893_10608796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	500	Open in IMG/M
3300031938\|Ga0308175_100132001	All Organisms → cellular organisms → Bacteria → Proteobacteria	2363	Open in IMG/M
3300031938\|Ga0308175_101265368	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300031939\|Ga0308174_10874456	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300031996\|Ga0308176_12532338	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300032002\|Ga0307416_102872232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	576	Open in IMG/M
3300032012\|Ga0310902_11188356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	537	Open in IMG/M
3300032074\|Ga0308173_10223040	All Organisms → cellular organisms → Bacteria → Proteobacteria	1580	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	71.03%
Environmental	Environmental	28.97%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	71.03%
Terrestrial	Environmental → Terrestrial	28.97%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	42.99%
Soil	Environmental → Terrestrial → Soil	28.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	27.10%
Rhizome	Host-Associated → Plants → Rhizome	0.93%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	30.84%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	23.36%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	21.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.15%
Loam	Environmental → Terrestrial → Soil → Loam	5.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.61%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	30.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	21.50%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	12.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.15%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.61%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	3.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	23.36%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	16.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	12.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.61%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300002067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1	Host-Associated	Open in IMG/M
3300002459	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6	Host-Associated	Open in IMG/M
3300003322	Sugarcane root Sample L2	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300020076	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3)	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
MBSR1b_0377.00006880	2162886012	Miscanthus Rhizosphere	EIAQTLAFLSALLMLISFAIWAKQLRGPLLQRLDGQRASNVAPAGIAIKLLMAAFGLSALAAVLAIIGWISQ
JGI24735J21928_100300712	3300002067	Corn Rhizosphere	MLEIGRTLAVAAALLMVISFAIWSSWLRGPLLQRLDGLRASNVAPXALAIKLLTVAFGVSLVAALFAIIGXIVP*
JGI24751J29686_100410242	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	MAAWCAPVAEMARVLAVAAALLMVISFAIWLSWLRGPLLQRLDGPRVSNVGPAALAMKSLIVAFGVSFVAAFLAVVAWISP*
rootL2_103529943	3300003322	Sugarcane Root And Bulk Soil	MAGVSQALAILSALLMAISFAIWANWLRGPLLERLDGQRASNAAPANLAITLLMVAFGVSVIAAVLAIGGWIAP*
Ga0062593_1006235363	3300004114	Soil	MPEVARTLAFLSAVLLVTSVAVWAKWLRGPLLQRLDGPRASNAAPAALVLKLLMAAFGVSAVAAVLAIGGWISP*
Ga0062593_1034048362	3300004114	Soil	MPEIAQTLAFLSALLMLISFAIWAKQLRGPLLQRLDGQRASNVAPAGIAIKLLMAAFGLSALAAVLAIIGWISQ*
Ga0062595_1026608052	3300004479	Soil	MPEIARILAFISAFLMVMSFAIWFNWLRGPLLQRLDGLRVSNAGATGFAVRPLMLAFVVSAVAAALTIVG
Ga0062592_1020139991	3300004480	Soil	MPDIARALAIGSAVLMGISFAIWANWLRGPLLQRLDGQRESNAGPAGIAIKLLMAALGVSAVAAVLAIVGW
Ga0062591_1000484154	3300004643	Soil	MPDIARALAIGSAVLMGISFAIWANWLRGPLLQRLDGQRESNAGPAGIAIKLLMAALGVSAVAAVLAIVGWISP*
Ga0062594_1001283932	3300005093	Soil	MPEIARALSFGAVLLMVLSFAVWASWLRGPLMQRLDGPRASNSKPAAVAIKLLVAAFGVSVVAAVLAIGAWISP*
Ga0062594_1015530731	3300005093	Soil	MAVGAMEVRSAPMPELAQTLAFVAALLMVISLAIWSGWLRGPLLQRLDGHRASNAAPAGLAIKLLIAAFGVSAVAAILAIGGWISP*
Ga0065715_103975021	3300005293	Miscanthus Rhizosphere	EIAQTLAFLSALLMLISFAIWAKQLRGPLLQRLDGQRASNVAPAGIAIKLLMAAFGLSALAAVLAIIGWISQ*
Ga0070658_100205193	3300005327	Corn Rhizosphere	MSEVARILAFASVVLMAISFAIWSHWLRGPLLERLDGQRASNAAAAALAIALLMVAFGVSVIAAVLAIGGWIAP*
Ga0070658_100340813	3300005327	Corn Rhizosphere	MLDLARPLAFGSALLMVISFAIWASWLEGPPLQRLDGQRTSNVEPAALALKLLMVSLGLSAVAAVLAVVQWISP*
Ga0070658_101415953	3300005327	Corn Rhizosphere	MPELAQTLAFVAALLMVISLAIWSGWLRGPLLQRLDGHRASNAAPAGLAIKLLIAAFGVSAVAAILAIGGWISP*
Ga0070658_101909272	3300005327	Corn Rhizosphere	RPPMLEIGRTLAVAAALLMVISFAIWSSWLRGPLLQRLDGLRASNVAPAALAIKLLTVAFGVSLVAALFAIIGRIVP*
Ga0070658_102521532	3300005327	Corn Rhizosphere	MPEIARALSFGAVLLMVLSFAVWASWLRGPLMQRLDGPRASNSKPAAVAIKLLVAAFGVSVVAAVLAIGGWISP*
Ga0070658_107882432	3300005327	Corn Rhizosphere	MRCRLRSTQAAHPSPASSDPMAGVSQALAILSALMMAISFAIWSNWLRGPLLERLDGQRASNAAPATLAITLLMVAFGVSVIAAVLAIGGWIAP*
Ga0070658_115094662	3300005327	Corn Rhizosphere	MPEIARILAFISAFLMVMSFAIWFNWLRGPLLQRLDGLRVSNAGAAGFAVRLLMLAFVVSAVAAALAIVGWISP*
Ga0070683_1014418301	3300005329	Corn Rhizosphere	MPEIARILAFISAFLMVMSFAIWVNWLRGPLLQRLDGLRVSNAGAAGFAVRLLMLAFVVSAVAAALA
Ga0070670_1018020262	3300005331	Switchgrass Rhizosphere	MPDIARALAIGSAVLMGISFAIWANWLRGPLLQRLDGQRESNAGPAGIAIKLLMAALGVSAVAAVLAIV
Ga0070680_1003186103	3300005336	Corn Rhizosphere	MPEIARILAFISAFLMVMSFAIWVNWLRGPLLQRLDGLRVSNAGAAGFAVRLLMLALVVSAVAAALAIVGWISP*
Ga0070660_10000558912	3300005339	Corn Rhizosphere	MAGVSQALAILSALMMAISFAIWSGWLRGPLLERLDGQRASNAAPATLAITLLMVAFGVSVIAAVLAIGGWIAP*
Ga0070660_1000620683	3300005339	Corn Rhizosphere	MPEIARILAFISAFLMVMSFAIWFNWLRGPLLQRLDGLRVSNAGAAGFAVRLLMLALVVSAVAAALAIVGWISP*
Ga0070661_1013885861	3300005344	Corn Rhizosphere	MPEVARILAFGSALLLVMSFAIWINWLRGPLLQRLDGLRVSNGGPAGFAAGLLMLGFVVSVAGAALAIVGWISP*
Ga0070669_1010001312	3300005353	Switchgrass Rhizosphere	MPELAQTLAFLAVLLMLTSFAIWLSWLRGPLLRRLDGQRASNATPAALAIQLLVAAFGISAVAAVLAIAGWISA*
Ga0070659_1002264422	3300005366	Corn Rhizosphere	MLEIGRTLAVAAALLMVISFAIWSSWLRGPLLQRLDGLRASNVAPVALAIKLLTVAFGVSLVAALFAIIGRIVP*
Ga0070659_1006408191	3300005366	Corn Rhizosphere	MPELAQTLAFVAALLMVISIAIWSSWLRGPLLQRLDGQRASNAAPAGLAIKLLIAAFGVSVVAAILAIGGWISP*
Ga0070659_1010352952	3300005366	Corn Rhizosphere	VPEVARILALLSALLIVTSFAIWAKWLRGPLLQRLDGQRASNHHPALVVIKLLMAAVAVSAAAAVLAIGGWIYP*
Ga0070667_1000238485	3300005367	Switchgrass Rhizosphere	MLEVAQALASLSAFLIVIFFAVWANWLRGPLLQRLDGQRASNTAPAALAIKLLMAAFGVSVVAAALAICAWISP*
Ga0070714_1000682652	3300005435	Agricultural Soil	MTESARMLAFASALLVAISFLMWANWLRGPLLQRLDGQRASNASPRALAVKFLIAAFVLSAVAAALAIVGWISP*
Ga0070663_1019432961	3300005455	Corn Rhizosphere	MAGVSQALAILSALMMAISFAIWSNWLRGPLLERLDGQRASNAAPATLAITLLMVAFGVSVIAAVLAIGGWIAP*
Ga0070662_1013594972	3300005457	Corn Rhizosphere	MARVLAFAAALLMVISFAIWLSWLRGPLLQRLDGPRVSNVGPAALAMKSLTVAFGVSFVAAFLAVVAWISP*
Ga0070679_1004656332	3300005530	Corn Rhizosphere	MLEIGRTLAVAAALLMVISFAIWSSWLRGPLLQRLDGLRASNVAPAALAIKLLTVAFGVSLVAALFAIIGRIVP*
Ga0070679_1007719701	3300005530	Corn Rhizosphere	SSDPMAGVSQALAILSALMMAISFAIWSGWLRGPLLERLDGQRASNAAPATLAITLLMVAFGVSVIAAVLAIGGWIAP*
Ga0070735_101924292	3300005534	Surface Soil	MLETAHILALFSAVLLLIAIAIWGEMLGGPLLQRLDGARASNSAPANVAIQVLLLALGLSALAAALAVVDWISP*
Ga0068853_1023146431	3300005539	Corn Rhizosphere	MPELAQTLAFVAALLMVISIAIWSGWLRGPLLQRLDGQRASNAAPAGLAIKLLIAAFGVSAVAAILAIGGWIS
Ga0070672_1017696322	3300005543	Miscanthus Rhizosphere	LLMVISFAIWASWLEGPPLQRLDGQRTSNVEPAALALKLLMVSLGLSAVAAVLAVVQWISP*
Ga0070693_1001383512	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	LLMVLSFAVWASWLRGPLMQRLDGPRASNSKPAAVAIKLLVAAFGVSVVAAVLAIGGWISP*
Ga0068855_1000674176	3300005563	Corn Rhizosphere	MPEIARILAFISAFLMVMSFAIWVNWLRGPLLQRLDGLRVSNAGAAGFAVRLLMLAFVVSAVAAALAIVGWISP*
Ga0068855_1008797902	3300005563	Corn Rhizosphere	RWLAMAVGAMEVRSAPMPELAQTLAFVAALLMVISLAIWSGWLRGPLLQRLDGHRASNAAPAGLAIKLLIAAFGVSAVAAILAIGGWISP*
Ga0070664_1003152612	3300005564	Corn Rhizosphere	MPELAQTLAFVAALLMVISIAIWSSWLRGPLLQRLDGQRASNAAPAGLAIKLLIAAFGVSAVAAILAIGGWISP*
Ga0070664_1010127772	3300005564	Corn Rhizosphere	MPDIARALAIGSALMMGISFAIWANWLRGPLLQRLDGQRESNAGPAAIAIKFLMAALGLSAVAAVLAIVGWISP*
Ga0070664_1013231051	3300005564	Corn Rhizosphere	RVLAFAAALLMVISFAIWLSWLRGPLLQRLDGPRVSNVAPAALAMKSLIVAFAVSFAAAVLAVVAWMSP*
Ga0066702_104910272	3300005575	Soil	MSEVARALAFLSALLIVLSFAIWAIGLRGPLLQRLDGRRASNAAPAALAIKLLTAAFGLSAIAALLAIVGWISP*
Ga0068854_1000897412	3300005578	Corn Rhizosphere	MPELAQTLAFVAALLMVISIAIWSGWLRGPLLQRLDGQRASNAAPAGLAIKLLIAAFGVSAVAAILAIGGWISP*
Ga0068856_1007187332	3300005614	Corn Rhizosphere	MLDLARPLAFGSALLTVISFAIWASWLEGPPLQRLDGQRTSNVEPAALALKLLMVSLGLSAVAAVLAVVQWISP*
Ga0068852_1004247712	3300005616	Corn Rhizosphere	MPELAQTLAFVAALLMVISLAIWSGWLRGPLLQRLDGQRASNAAPAGLAIKLLIAAFGVSAVAAILAIGGWISP*
Ga0068852_1022715551	3300005616	Corn Rhizosphere	MAEVAAALGSFSALLIVISLAIWASWLRGPLLQRLDGQRVSNATSAGIAIKLLIAAFGVSAVAAVLAIVAWISP*
Ga0068851_102686362	3300005834	Corn Rhizosphere	MPELAQTLAFVAALLMVISLAIWSGWLRGPLLQRLDGHGASNAAPAGLAIKLLIAAFGVSAVAAILAIGGWISP*
Ga0068860_1015051832	3300005843	Switchgrass Rhizosphere	MPELAQTLAFLAVLLMLTSFAIWLSWLRGPLLRRLDGQRASNATPAALAIQLLVAAFGISAVAA
Ga0068865_1016171042	3300006881	Miscanthus Rhizosphere	VSWQMSAPMLEVAQALASLSAFLIVIFFAVWANWLRGPLLQRLDGQRASNTAPAALAIKLLMAAFGVSVVAAALAICAWISP*
Ga0105237_104408303	3300009545	Corn Rhizosphere	AFAAALLIAISFAIWRSWLRGPLLQRLDGLRASNVAPAALAIKLLLAALCVSAVAAVLAVVAWISP*
Ga0105237_123389632	3300009545	Corn Rhizosphere	LAFVAALLMVISIAIWSGWLRGPLLQRLDGQRASNAAPAGLAIKLLIAAFGVSAVAAILAIGGWISP*
Ga0105238_120483402	3300009551	Corn Rhizosphere	MPELAQTLAFVAALLMVISIAIWSGWLRGPLLQRLDGQRASNAAPAGLAIKLLIAAFGVSAMAAMLAIGGWISP*
Ga0150985_1173811172	3300012212	Avena Fatua Rhizosphere	VSEVARALAFVSALLIVMSFAIWAIGLRGPLLQRLDGRRASNAAPAALAMKLLTAAFGLSATAALLAIVGWISP*
Ga0150984_1048387042	3300012469	Avena Fatua Rhizosphere	MTEAACILALLSAFLLALSFAIWAKWLRGPLLQRLDGRRASNAEPARLAMQLLMLGFGISAVAATLAVAGWISP*
Ga0164305_115743612	3300012989	Soil	MPEIARILAFISAFLMVMSFAIWFNWLRGPLLQRLDGLRVSNAGAAGFAVRLLVLAFVVSAVAAALAIVGWISP*
Ga0157373_103269662	3300013100	Corn Rhizosphere	MPELAQTLAFVAALLMVISIAIWSGWLRGPLLQRLDGQRASNAVPAGLAIKLLIAAFGVSAVAAILAIGGWISP*
Ga0157373_108584042	3300013100	Corn Rhizosphere	MAEVERTLAFGAGLLMVISFAIWASWLRGPLLQRLDGRRASNVAPAGLAVKLLLVAFGASAIAAALAIMEWISP*
Ga0157371_106768422	3300013102	Corn Rhizosphere	MPELAQTLAFVAALLMVISIAIWSGWLRGPLLQRLDGHRASNAAPAGLAIKLLIAAFGVSAVAAILAIGGWISP*
Ga0157370_100861635	3300013104	Corn Rhizosphere	MPEVARALAFAAALLMAVSFVIWLGWLRGPLLQRLDGPRASNVAPAALAINLLVAAFIVSFVAAAIAIVGWISP*
Ga0157378_105998331	3300013297	Miscanthus Rhizosphere	AAAILMVSSFAIWANWLSGPLLQRLSGERESNDAAAGLAMKLLVAAFGVSALAAGLAIVGWVSP*
Ga0182008_101244121	3300014497	Rhizosphere	MADIAVALGSFSALLMVISLAVWLCWLRGPLLQRLDGERVSNAASAGIAINLLVAAFGVSAVAAVLAIVAWISP*
Ga0182008_101701892	3300014497	Rhizosphere	MPEVARILAFISAFLMVTSFAIWFNWLRGPLLQRLDGLRVSNAGAAGFAVRLLMLAFVVSAVAAALAIVGWISP*
Ga0182008_106542022	3300014497	Rhizosphere	MPEVAQALAFLSALLMVISFAIWSKWLGGPLLQRLDGQRASNAAPAALAIKLLMAAFGVSVVAAVLAIGGWISP*
Ga0132258_117857022	3300015371	Arabidopsis Rhizosphere	MAGVSQALAILSALMMAISFAIWFNWLRGPLLERLDGQRASNAAPATLAITLLMVAFGISAVAAVLAIGGWIAP*
Ga0132255_1002789054	3300015374	Arabidopsis Rhizosphere	MARVLAVAAALLMVISFAIWLSWLRGPLLQRLDGPRVSNVAPAALAMKSLIVAFAVSFVAAVLAVVAWMSP*
Ga0132255_1058278342	3300015374	Arabidopsis Rhizosphere	MAGVSQTLAILSALLMAISFAIWSNWLRGPLLERLDGQRASNAAPATLAITLLMVAFGVSAIAAVLAIGGWIAP*
Ga0206355_16969482	3300020076	Corn, Switchgrass And Miscanthus Rhizosphere	MAGVSQALAILSALMMAISFAIWSGWLRGPLLQRLDGHRASNAAPAGLAIKLLIAAFGVSAVAAILAIGGWISP
Ga0182009_101679592	3300021445	Soil	MAEVARALGFFSALLMVLSFAIWANCLRGPLLQRLDGQRASNAAPAALAIKLLMAAFGVSAVAAVLAIVGWISP
Ga0207656_101366663	3300025321	Corn Rhizosphere	MLDLARPLAFGSALLMVISFAIWASWLEGPPLQRLDGQRTSNVEPAALALKLLMVSLGLSAVAAVLAVVQWISP
Ga0207656_104986831	3300025321	Corn Rhizosphere	PMPEIARALSFGAVLLMVLSFAVWASWLRGPLMQRLDGPRASNSKPAAVAIKLLVAAFGVSVVAAVLAIGGWISP
Ga0207647_100187167	3300025904	Corn Rhizosphere	MPELAQTLAFVAALLMVISLAIWSGWLRGPLLQRLDGHRASNAAPAGLAIKLLIAAFGVSAVAAILAIGGWISP
Ga0207647_100512462	3300025904	Corn Rhizosphere	MAGVSQALAILSALMMAISFAIWSGWLRGPLLERLDGQRASNAAPATLAITLLMVAFGVSVIAAVLAIGGWIAP
Ga0207647_102151762	3300025904	Corn Rhizosphere	MPEVARTLAFLSAVLLVTSVAVWAKWLRGPLLQRLDGPRASNAAPAALVLKLLMAAFGVSAVAAVLAIGGWISP
Ga0207705_1000384513	3300025909	Corn Rhizosphere	MPEIARALSFGAVLLMVLSFAVWASWLRGPLMQRLDGPRASNSKPAAVAIKLLVAAFGVSVVAAVLAIGGWISP
Ga0207705_100956932	3300025909	Corn Rhizosphere	MLEIGRTLAVAAALLMVISFAIWSSWLRGPLLQRLDGLRASNVAPAALAIKLLTVAFGVSLVAALFAIIGRIVP
Ga0207705_101228503	3300025909	Corn Rhizosphere	MSEVARILAFASVVLMAISFAIWSHWLRGPLLERLDGQRASNAAAAALAIALLMVAFGVSVIAAVLAIGGWIAP
Ga0207671_101631471	3300025914	Corn Rhizosphere	MAGVSQALAILSALMMAISFAIWSGWLRGPLLERLDGQRASNAAPATLAITLLMVAFGVSVIAAVLAI
Ga0207681_109308253	3300025923	Switchgrass Rhizosphere	MPELAQTLAFLAVLLMLTSFAIWLSWLRGPLLRRLDGQRASNATPAALAIQLLVAAFGISAVAAVLAIAGWISA
Ga0207650_103161243	3300025925	Switchgrass Rhizosphere	MAAWCAPVAEMARVLAVAAALLMVISFAIWLSWLRGPLLQRLDGPRVSNVGPAALAMKSLIVAFGVSFVAAFLAVVAWISP
Ga0207690_106764412	3300025932	Corn Rhizosphere	MLEIGRTLAVAAALLMVISFAIWSSWLRGPLLQRLDGLRASNVAPVALAIKLLTVAFGVSLVAALFAIIGRIVP
Ga0207690_111027341	3300025932	Corn Rhizosphere	MPELAQTLAFVAALLMVISIAIWSSWLRGPLLQRLDGQRASNAAPAGLAIKLLIAAFGVSAVAAILAIGGWIS
Ga0207679_102894022	3300025945	Corn Rhizosphere	MPELAQTLAFVAALLMVISIAIWSSWLRGPLLQRLDGQRASNAAPAGLAIKLLIAAFGVSAVAAILAIGGWISP
Ga0207679_121660242	3300025945	Corn Rhizosphere	MPDIARALAIGSALMMGISFAIWANWLRGPLLQRLDGQRESNAGPAAIAIKFLMAALGLSAVAAVLAIVGWISP
Ga0207651_115939321	3300025960	Switchgrass Rhizosphere	MPEIAQTLAFLSALLMLISFAIWAKQLRGPLLQRLDGQRASNVAPAGIAIKLLMAAFGLSALAAVLAIIGWISQ
Ga0207640_110494422	3300025981	Corn Rhizosphere	MAGVSQALAILSALMMAISFAIWSNWLRGPLLERLDGQRASNAAPATLAITLLMVAFGVSVIAAVLAIGGWIAP
Ga0207702_115190511	3300026078	Corn Rhizosphere	MPEIARILAFISAFLMVMSFAIWVNWLRGPLLQRLDGLRVSNAGAAGFAVRLLMLAFVVSAVA
Ga0207702_122152911	3300026078	Corn Rhizosphere	MPEIARILAFISAFLMVMSFAIWFNWLRGPLLQRLDGLRVSNAGAAGFAVRLLMLAFVVSAVAAALAIVGWIS
Ga0207676_121137783	3300026095	Switchgrass Rhizosphere	MLDLARPLAFGSALLMVISFAIWASWLEGPPLQRLDGQRTSNVEPAALALKLLMVSLGLSAVAAV
Ga0207676_125134261	3300026095	Switchgrass Rhizosphere	LMVISFAIWLSWLRGPLLQRLDGPRVSNVAPAALAMKSLIVAFAVSFAAAVLAVVAWMSP
Ga0207698_104966682	3300026142	Corn Rhizosphere	MPEVARILAFGSALLLVMSFAIWINWLRGPLLQRLDGLRVSNGGPAGFAAGLLMLGFVVSVAGAALAIVGWISP
Ga0247819_105125612	3300028608	Soil	TLRRAAARQRAAPMPEIAQALAFLSALLIVMSFAIWSNWLRGPLLQRLDGQRASNTAPAALAIKLLMAAFGVSALAAMLAIAGWISV
Ga0247827_101196903	3300028889	Soil	MPEIAQALAFLSALLIVMSFAIWSNWLRGPLLQRLDGQRASNTAPAALAIKLLMAAFGVSALAAMLAIAGWISV
Ga0247827_110012491	3300028889	Soil	MARVLAVAAAVLMVISFAIWLSWLRGPLLQRLDGPRVSNVGPAALAMKSLIVAFGVSFVA
Ga0310888_100950661	3300031538	Soil	MARVLAFAAALLMVISFAIWLSWLRGPLLQRLDGPRVSNVAPAALAMKSLIVAFAVSFVAAVLAVVAWMSP
Ga0310886_100613704	3300031562	Soil	MARVLAFAAALLMVISFAIWLSWLRGPLLQRLDGPRVSNVAPAALAMKSLIVAFAVSFAAAVLAVVAWMSP
Ga0310907_105782043	3300031847	Soil	MPEIAQTLAFLSALLMLISFAIWAKQLRGPLLQRLDGQRASNVAPAGIAIKLLMAAFGLSALAAVLAIIGWIS
Ga0310893_106087961	3300031892	Soil	MAAWCAPVAEMARVLAVAAAVLMVISFAIWLSWLRGPLLQRLDGPRVSNVGPAALAMKSLIVAFGVSFVAAVLAVVAWISP
Ga0308175_1001320012	3300031938	Soil	MPEVARILAFVSAFLMVMSFAIWVNWLRGPLLQRLDGLRVSNAGPAGFAIRLLMLAFVLSALAAALAIVGWISP
Ga0308175_1012653682	3300031938	Soil	MPEVARTLAFLSAVLMVTSFAIWAKWLRGPLLQRLDGKRASNAEPAALAIKLLMAALGVSALAAVLAVGGWISP
Ga0308174_108744562	3300031939	Soil	MPEVARILAFVSAFLMVMSFAIWLNWLRGPLLQRLDGLRVSNAGPAGFAIRLLMLAFVLSALAAALAIVGWISP
Ga0308176_125323381	3300031996	Soil	MPEVARTLAFLSAVLMVTSFAIWAKWLRGPLLQRLDGQRASNAEPAALAIKLLMAALGVSALAAVLAVGGWISP
Ga0307416_1028722322	3300032002	Rhizosphere	ALLIVISIAIWANRLRGPLLQRLDGKRTSNAAPAATAIKLLMAALGISAVAAAFAIIGWISS
Ga0310902_111883562	3300032012	Soil	GRLTCLMYCRRGFTGAVVRTAAWCAPVAEMARVLAFAAALLMVISFAIWLSWLRGPLLQRLDGPRVSNVAPAALAMKSLIVAFAVSFVAAVLAVVAWMSP
Ga0308173_102230403	3300032074	Soil	MPEVARILAFVSAFLMVMSFAIWVNWLRGPLLQRLDGLRVSNAGPAGFSIRLLMLAFVLSALAAALAIVGWISP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092951

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences