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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F092940 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 107 |
| Average Sequence Length | 152 residues |
| Representative Sequence | MRIKLLALLAVLALAISMSSSARAITWGRPDVNNEYPNVASVRGIVEAQNLARISCSGSLLHRDADKVVILTAAHCTDAWTGAIAAGTIDSVGVSFDQNNQINGVTTDATYYVRGGVPISFPAKDAPFETFDYGLVVF |
| Number of Associated Samples | 95 |
| Number of Associated Scaffolds | 107 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 81.55 % |
| % of genes near scaffold ends (potentially truncated) | 94.39 % |
| % of genes from short scaffolds (< 2000 bps) | 91.59 % |
| Associated GOLD sequencing projects | 94 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.65 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (82.243 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (9.346 % of family members) |
| Environment Ontology (ENVO) | Unclassified (27.103 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (35.514 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 24.10% β-sheet: 29.52% Coil/Unstructured: 46.39% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.65 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 107 Family Scaffolds |
|---|---|---|
| PF00144 | Beta-lactamase | 3.74 |
| PF00089 | Trypsin | 2.80 |
| PF07883 | Cupin_2 | 0.93 |
| PF13240 | zinc_ribbon_2 | 0.93 |
| PF04107 | GCS2 | 0.93 |
| PF08734 | GYD | 0.93 |
| PF00135 | COesterase | 0.93 |
| PF13669 | Glyoxalase_4 | 0.93 |
| PF13548 | DUF4126 | 0.93 |
| PF02913 | FAD-oxidase_C | 0.93 |
| PF13577 | SnoaL_4 | 0.93 |
| PF01022 | HTH_5 | 0.93 |
| PF04203 | Sortase | 0.93 |
| PF00528 | BPD_transp_1 | 0.93 |
| COG ID | Name | Functional Category | % Frequency in 107 Family Scaffolds |
|---|---|---|---|
| COG1680 | CubicO group peptidase, beta-lactamase class C family | Defense mechanisms [V] | 3.74 |
| COG1686 | D-alanyl-D-alanine carboxypeptidase | Cell wall/membrane/envelope biogenesis [M] | 3.74 |
| COG2367 | Beta-lactamase class A | Defense mechanisms [V] | 3.74 |
| COG0277 | FAD/FMN-containing lactate dehydrogenase/glycolate oxidase | Energy production and conversion [C] | 0.93 |
| COG2272 | Carboxylesterase type B | Lipid transport and metabolism [I] | 0.93 |
| COG3764 | Sortase (surface protein transpeptidase) | Cell wall/membrane/envelope biogenesis [M] | 0.93 |
| COG4274 | Uncharacterized conserved protein, contains GYD domain | Function unknown [S] | 0.93 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 82.24 % |
| All Organisms | root | All Organisms | 17.76 % |
| Visualization |
|---|
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 9.35% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 8.41% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment | 7.48% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 5.61% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 4.67% |
| Natural And Restored Wetlands | Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands | 3.74% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 3.74% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 2.80% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 2.80% |
| Marine | Environmental → Aquatic → Marine → Coastal → Sediment → Marine | 1.87% |
| Marine Sediment | Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment | 1.87% |
| Sediment | Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment | 1.87% |
| Mangrove Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment | 1.87% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.87% |
| Serpentine Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil | 1.87% |
| Sugarcane Root And Bulk Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil | 1.87% |
| Natural And Restored Wetlands | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands | 1.87% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 1.87% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 1.87% |
| Tabebuia Heterophylla Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere | 1.87% |
| Arabidopsis Thaliana Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere | 1.87% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 1.87% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.87% |
| Sediment | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment | 0.93% |
| Freshwater Wetlands | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands | 0.93% |
| Freshwater Wetlands | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands | 0.93% |
| Salt Marsh | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh | 0.93% |
| Marine Estuarine | Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Estuarine | 0.93% |
| Wetland | Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland | 0.93% |
| Sediment (Intertidal) | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) | 0.93% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 0.93% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 0.93% |
| Terrestrial | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial | 0.93% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.93% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 0.93% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Loam → Unclassified → Soil | 0.93% |
| Soil | Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil | 0.93% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere | 0.93% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 0.93% |
| Populus Endosphere | Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere | 0.93% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.93% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.93% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 0.93% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 0.93% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 0.93% |
| Agave | Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave | 0.93% |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2228664021 | Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil | Environmental | Open in IMG/M |
| 3300000956 | Soil microbial communities from Great Prairies - Kansas, Native Prairie soil | Environmental | Open in IMG/M |
| 3300001213 | Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly) | Environmental | Open in IMG/M |
| 3300001371 | Baker-B-sed | Environmental | Open in IMG/M |
| 3300001686 | Grasslands soil microbial communities from Hopland, California, USA | Environmental | Open in IMG/M |
| 3300003319 | Sugarcane bulk soil Sample L2 | Environmental | Open in IMG/M |
| 3300003321 | Sugarcane bulk soil Sample H1 | Environmental | Open in IMG/M |
| 3300004009 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2 | Environmental | Open in IMG/M |
| 3300004029 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordB_D2 | Environmental | Open in IMG/M |
| 3300004055 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWB_D2 | Environmental | Open in IMG/M |
| 3300004058 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1 | Environmental | Open in IMG/M |
| 3300004156 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1 | Environmental | Open in IMG/M |
| 3300004463 | Combined assembly of Arabidopsis thaliana microbial communities | Host-Associated | Open in IMG/M |
| 3300004643 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3 | Environmental | Open in IMG/M |
| 3300005093 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks | Environmental | Open in IMG/M |
| 3300005294 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil | Environmental | Open in IMG/M |
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005406 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG | Environmental | Open in IMG/M |
| 3300005562 | Agave microbial communities from Guanajuato, Mexico - As.Ma.e | Host-Associated | Open in IMG/M |
| 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005615 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG | Environmental | Open in IMG/M |
| 3300005713 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2) | Environmental | Open in IMG/M |
| 3300005830 | Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.178_YBM | Environmental | Open in IMG/M |
| 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Host-Associated | Open in IMG/M |
| 3300006038 | Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Host-Associated | Open in IMG/M |
| 3300006058 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 | Host-Associated | Open in IMG/M |
| 3300006196 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 | Host-Associated | Open in IMG/M |
| 3300006847 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Host-Associated | Open in IMG/M |
| 3300006853 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4 | Host-Associated | Open in IMG/M |
| 3300006969 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 | Host-Associated | Open in IMG/M |
| 3300007004 | Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost | Environmental | Open in IMG/M |
| 3300007614 | Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_D1_MG | Environmental | Open in IMG/M |
| 3300009091 | Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300009100 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2 | Host-Associated | Open in IMG/M |
| 3300009101 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009146 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015 | Environmental | Open in IMG/M |
| 3300009147 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009165 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 | Environmental | Open in IMG/M |
| 3300009168 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 | Environmental | Open in IMG/M |
| 3300009169 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 | Environmental | Open in IMG/M |
| 3300009509 | Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_11 | Environmental | Open in IMG/M |
| 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Host-Associated | Open in IMG/M |
| 3300010036 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26 | Environmental | Open in IMG/M |
| 3300010045 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61 | Environmental | Open in IMG/M |
| 3300010392 | Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385 | Environmental | Open in IMG/M |
| 3300010413 | Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_9 | Environmental | Open in IMG/M |
| 3300010430 | Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples | Environmental | Open in IMG/M |
| 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Host-Associated | Open in IMG/M |
| 3300012022 | Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6 | Environmental | Open in IMG/M |
| 3300012212 | Combined assembly of Hopland grassland soil | Host-Associated | Open in IMG/M |
| 3300012532 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG | Environmental | Open in IMG/M |
| 3300012915 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2 | Environmental | Open in IMG/M |
| 3300012931 | Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG | Environmental | Open in IMG/M |
| 3300012937 | Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015 | Environmental | Open in IMG/M |
| 3300014259 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1 | Environmental | Open in IMG/M |
| 3300014296 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D1 | Environmental | Open in IMG/M |
| 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Host-Associated | Open in IMG/M |
| 3300014487 | Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG | Environmental | Open in IMG/M |
| 3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Host-Associated | Open in IMG/M |
| 3300015077 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2) | Environmental | Open in IMG/M |
| 3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
| 3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
| 3300018028 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex | Environmental | Open in IMG/M |
| 3300018432 | Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T | Environmental | Open in IMG/M |
| 3300018466 | Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T | Environmental | Open in IMG/M |
| 3300018469 | Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T | Environmental | Open in IMG/M |
| 3300018481 | Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T | Environmental | Open in IMG/M |
| 3300020003 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2 | Environmental | Open in IMG/M |
| 3300022208 | Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_4_1 | Environmental | Open in IMG/M |
| 3300022306 | Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_24 | Environmental | Open in IMG/M |
| 3300025165 | Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1 | Environmental | Open in IMG/M |
| 3300025322 | Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 (SPAdes) | Environmental | Open in IMG/M |
| 3300025901 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025930 | Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) | Environmental | Open in IMG/M |
| 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025937 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027683 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015 (SPAdes) | Environmental | Open in IMG/M |
| 3300027722 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes) | Environmental | Open in IMG/M |
| 3300027799 (restricted) | Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MG | Environmental | Open in IMG/M |
| 3300028587 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3 | Environmental | Open in IMG/M |
| 3300028802 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S | Environmental | Open in IMG/M |
| 3300028812 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48 | Environmental | Open in IMG/M |
| 3300030619 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq) | Environmental | Open in IMG/M |
| 3300031366 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S | Environmental | Open in IMG/M |
| 3300031731 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 | Host-Associated | Open in IMG/M |
| 3300031824 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 | Host-Associated | Open in IMG/M |
| 3300031949 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197 | Environmental | Open in IMG/M |
| 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Host-Associated | Open in IMG/M |
| 3300032005 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 | Host-Associated | Open in IMG/M |
| 3300032179 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2 | Environmental | Open in IMG/M |
| 3300033291 | Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-10 | Environmental | Open in IMG/M |
| 3300033527 | Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) | Host-Associated | Open in IMG/M |
| 3300033551 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5 | Environmental | Open in IMG/M |
| 3300034673 | Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R3 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| ICCgaii200_08367671 | 2228664021 | Soil | VRTRVVTLFVVGSLALAMSSSASAXTWGRPDXNNEYPNVASVRGIVEAANTARISCSGSLLHRDQEKVVILTAAHCTDAWEGAIASGTIDSVGVSFDQNNQVNGTTTDATFYVRGGVPISFPAKDAPFETFDYGLVVFPANAEN |
| JGI10216J12902_1119775091 | 3300000956 | Soil | MSKLRRNLVTLLAVGAVGLAVSSSASAITWGRADTDNEYPNVASVRGIVAATNTARISCSGSLLHSDSEKVVILTAAHCTDSWSDAIAAGTIDSVGVSFDQNNQVNGTTTDGTFYVRGGVPISYPAKDAPFETFD |
| JGI10216J12902_1190285331 | 3300000956 | Soil | VRSRVVTLFAVGTLALAMSSSASAITWGRPDANNEYPNVASVRGIVEATNTARISCSGSLLHRDQEKVVILTAAHCTDAWVSAIASGTIDSVGVSFDQNNQVNGTTTDATFYVRGGVPISYPAKDAPFETFD |
| JGIcombinedJ13530_1062673701 | 3300001213 | Wetland | MRTKLLILLAVVALAFGLASRAQAITWGQQDLNGQYPNVVSVRGIVEATNTARVSCSGSLLHIDSQKVVILTAAHCTDAWTAEIAAGRLDSVGVSFDQNNVINGSFSDATYYVRGGFPISLPAKDAPFEKFDYGLVVF |
| BBDRAFT_103942692 | 3300001371 | Marine Estuarine | VGTTTNLKGRTAMRTKLLTLLAVVALAFGITSIAHAITWGQEDLNGEYPNVVSVRGVVEATNTARFSCSGSLLYIDRQKVVILTAAHCTDGWIAEIAAGRLDSVGVSFDQNNVVNNLFSDATYYVRGGVPISLSQKDAPFEKLDYG |
| C688J18823_102599382 | 3300001686 | Soil | MKFRTKLIGSLGAAALVLGVAAPVGAITWGVPDTNNLYPNVASVRGIVESQNLARVSCSGSLLSRDARKIVILTAAHCTDAWSGEIAAGTLDSVGVSFDQNNQVNGSTSDATVYLRGGVPISFPAKDAPFETFDYGLVVFPANATNSLGQTITARWGALS |
| soilL2_101339561 | 3300003319 | Sugarcane Root And Bulk Soil | MRIKLLAFLAVVALAISISSSARAITWGRFDMNNEYPNVASVRGIVSATNTARISCSGSLLTIDADKVVILTAAHCTDAWTGAIAAGTIDSVGVSFDQNNQVNGTTTDGTFYVRGGVPISFPAKDAPFESFDYGLVVFAASAENGVG |
| soilH1_102765551 | 3300003321 | Sugarcane Root And Bulk Soil | MRIKVLAVFAVLALAISITSSARAITWGRPDVNNEYPNVASVRGIIEATNTAATSCSGSLLHRDSEKVVILTAAHCTDAWTSQIAAGTRDSVGVSFDQNNQVNGTTTNATFYVRGGVPISFPAKDAPFESFDYGLVVFSADAVNSLGQTIQQRWG |
| Ga0055437_102696241 | 3300004009 | Natural And Restored Wetlands | MRMKLVTLLAVAALVFSISSRAHAITWGRPDLNGEYPNTVSVRGIVDAANVARISCSGSLLHIDSQKVVILTAAHCTDAWMGEIVAGRLDSVGVSFDQDNVVNGSFTDATYYVRGGVPISLPAKDAPFEKLDYGMVVFSSSATNSLGETIAQRWGGTP |
| Ga0055442_101283632 | 3300004029 | Natural And Restored Wetlands | MLKKALILLVLLVAFTVTSTVMAITWGREDSAGEYPNVASVRGIVEATNSARGSCSGSLLHADDQKIVILSAAHCTDFWAALIAAGQLDSVGVSFDQNNVINGSLTDATYYVRGGIPISFPAKDAPFEKFDYGLVVFSKDAVNSLGQTAAERWGV |
| Ga0055480_104493061 | 3300004055 | Natural And Restored Wetlands | LLMAVSSAALAITWGQEDPGGEYPNVASVRGIVEADNLARFSCSGSLLHVDEQKVVLLTAAHCTDGWTGEIAAGNLDSVGVSFDKNNVINDSFSDATYYVRGGVPISFLAKDSPFEKFDYGLVVFPADAKNHQGNTVADRWGSITPVQLPPDETYLSHLIKANRTSRDLLVF |
| Ga0055498_100698271 | 3300004058 | Natural And Restored Wetlands | MRIKLFGLFAVLALAISISSSAHAITWGRPDVNNDYPNVASVRGIFLAQNLARISCSGSLLYRDAQKVVILTAAHCTDAWTGAIAAGTIDTVGVSFDQNNQVNGSTTDGTYYVRGGAPISFPAKDAPFDSFDYGLVV |
| Ga0062589_1018420861 | 3300004156 | Soil | MRIKLLALLAVLALAISMSSSARAITWGRPDVNNEYPNVASVRGIVEAQNLARISCSGSLLHRDADKVVILTAAHCTDAWTGAIAAGTIDSVGVSFDQNNQINGVTTDATYYVRGGVPISFPAKDAPFETFDYGLVVFSASAENSVGQTIQQRWGALTPVQV |
| Ga0063356_1022383822 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MRRLVLGICVVAAAVMASTAVAITWGRPDLNNEYPNVASVRGIVEAQNLARISCSGSLLQRDAQKVVILTAAHCTDGWAAAIAAGTIDSVGVSFDQNNQVNGTTTNGTFYVRDGVPISFPAKDAPFE |
| Ga0063356_1035481861 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MRKRLNLQWQRTMRRHLVGVTIGVVVAAVMASTAVAITWGRPDVNNEYPNVASVRGIVQAQNLARISCSGSLLHRDADKVVILTAAHCTDAWVAAIAAGTIDSVGVSFDQNNQVNGVTTDGTFYVDGGVPISFPAKD |
| Ga0062591_1005929311 | 3300004643 | Soil | MRIKLLALLAVLALAISMSSSARAITWGRPDVNNEYPNVASVRGIVEAQNLARISCSGSLLHRDADKVVILTAAHCTDAWTGAIAAGTIDSVGVSFDQNNQINGVTTDATYYVRGGVPISFPAKDAPFETFDYGLVVF |
| Ga0062594_1016978861 | 3300005093 | Soil | VRRTALGLLVVVSLAVPSTAGAITFGKPDVNNEYPNVASVRGIDEAQNVARLSCSGSLLHRDADKIVILTAAHCTDGWAGQIAAGTLDSVGVSFDQNNQVNGTTTDATFYVRGGVPISFPAKDAPFET |
| Ga0065705_106124821 | 3300005294 | Switchgrass Rhizosphere | MKIKILGVLAVLALATSMVSSAFAITWGRPDVNNEYPNVASVRGIIEATNTAATSCSGSLLYRDADKVVILTAAHCTDAWTSLIAAGQRDSVGVSFDQNNQVNGSTTDATYYVRGGVPISFPAKDAPFETFDYGLVVFSTAD |
| Ga0066388_1069210421 | 3300005332 | Tropical Forest Soil | MRATILGVVVVLVAVTTASVASAITWGTADVNNQYPNVASVRGVVVADNFARLSCSGSLLQRDAQKVVILTAAHCTDAWAGEIAAGTLDTVGVSFDQNNQVNGSTSDATRYVRGGVPISFPAKDA |
| Ga0070671_1018407111 | 3300005355 | Switchgrass Rhizosphere | MRRTLVGLFAVGALVVGMSSIASAITWGRADVNNEYPNVASVRGIVEAQNVARISCSGSLLEMDADKVVILTAAHCTDAWSGAIAAGTIDSVGVSFDQNNQVNGTTTDATYYVSGGVPISFPAKDAPFETFDYGLVVFDASAENTLGQTVHDRWGALAPVQVA |
| Ga0070703_105657511 | 3300005406 | Corn, Switchgrass And Miscanthus Rhizosphere | MKFRTKLVGLLATGALALGVAAPAYAITFGRQDLANEFPNVASVRGIVEAQNLARVSCSGSLLSRDATKIVILTAAHCTDAWSAEIAAGTLDSVGVSFDQNNQVNGTTTDATFYVRGGVPISFPAKDAPFETFDYGLVVFPA |
| Ga0058697_105420692 | 3300005562 | Agave | MRRVLVGLFAIVAFFGMSSSAEAITWGRPDVNNEYPNVASVRGISDAVNVARISCSGSLLQRDADKVVILTAAHCTDAWRAAIAAGTIDSVGVSFDQNNQVNGTTTDATYYVRGGVPVSFPAKDAPFETFDYGLVVFPANAQNTLGQTIQGRWGPLAPVR |
| Ga0070664_1015967361 | 3300005564 | Corn Rhizosphere | MKFRSKLVGLLGAGALVLGIAAPAYAITFGRQDLANEFPNVASVRGIVEAQNLARVSCSGSLLTRDANKIVILTAAHCTDAWSAEIAAGTLDSVGVSFDQNNQVNGTTTNATFYVRGGVPISFPAKDAPFETFDYGLVVFPANAQNSIGQTVTQRWGALTPVQIAPDPGYL |
| Ga0070702_1004718171 | 3300005615 | Corn, Switchgrass And Miscanthus Rhizosphere | MKFRTKLVGLLATGTLALGVAAPAYAITFGRQDLANEFPNVASVRGIVEAQNLARVSCSGSLLSRDATKIVILTAAHCTDAWSAEIAAGTLDSVGVSFDQNNQVNGTTTDATFYVRGGVPISFPAKDAPFETF |
| Ga0066905_1005938662 | 3300005713 | Tropical Forest Soil | VRTRLILPLVVAASVVGMSTSAGAITWGREDVNNEHPNVASVRGIVEAQNLARVSCSGSLLHRDADKVVILTAAHCTDAWAAEIAAGTLDSVGVSFDQNNQVNGTTTNATFYVRGGVPISFPAKDAPFETFDYGLVVFPVGAENGVGQTIAERWGALAPVQIAP |
| Ga0074473_111532644 | 3300005830 | Sediment (Intertidal) | MKTKLLALLVVVALTFGMTSIALAITWGDPDLNGEYPNVVSVRGIVEAENRAAGSCSGSLLHIDSQKVVILTAAHCTDSWTARIAAGSLDSVGVSFDQDNVINGSISDATYYVRGGVPISLPQKDAPFEKLDYGMTGT |
| Ga0081455_110299011 | 3300005937 | Tabebuia Heterophylla Rhizosphere | VRTRLILPLVIVASVVGMSTSAGAITWGREDVNNEHPNVASVRGIVEAQNLARVSCSGSLLHRDADKVVILTAAHCTDAWAAEIAAGTLDSVGVSFDQNNQVNGTTTDATFYVRGGVPISFPAKDAPFETFDYGLVVFPTSAENR |
| Ga0081455_110468711 | 3300005937 | Tabebuia Heterophylla Rhizosphere | MRRLLFVLCGVVAAVMVSSAVAITFGRPDVNNEYPNVASVRGIVAAQNLARISCSGSLLQRDAQKVVVLTAAHCTDAWAGAIAAGTIDSVGVSFDQNNQVNGTTTNGTFYVRGGVPISFPAKDAPFEKFDYGLVVFPATAENGVGQTVTGRWGALPPVQ |
| Ga0075365_109472652 | 3300006038 | Populus Endosphere | MRRLVLGICVVAAAVMASTAVAITWGRPDVNNEYPNVASVRGIVEAQNLARISCSGSLLQRDAQKVVILTAAHCTDGWAAAIAAGTIDSVGVSFDQNNQVNGTTTNGTFYVRGGVPISFPAKDAPFEKFDYGLVAFPASAENAVGQTVTERWGA |
| Ga0075432_102365692 | 3300006058 | Populus Rhizosphere | MRRAVLGLLAVVSLAVPSTAGAITFGQPDVNNQYPNVASVRGIDEAQNVARVSCSGSLLHRDAQKVVILTAAHCTDAWAGEIAAGTLDSVGVSFDQNNQVNGTTNNATFYVRGGVPISLPAKDAPFEKLDYGLVVFPTNAENAVGQTIFERWGALTPIQVSPSAD |
| Ga0075422_105202881 | 3300006196 | Populus Rhizosphere | MRRAVLGLLAVVSLAVPSTAGAITFGQPDVNNQYPNVASVRGIDEAQNVARVSCSGSLLHRDAQKVVILTAAHCTDAWAGEIAAGTLDSVGVSFDQNNQVNGTTNNATFYVRGGVPISLPAKDAPFEKLDYGLVVFPTNAENAVGQTIFERWGALTPVQVSPSADYLSDLVAGVRN |
| Ga0075431_1000310711 | 3300006847 | Populus Rhizosphere | MRRAVLGLLAVVSLAVPSTAGAITFGQPDVNNQYPNVASVRGIDEAQNVARVSCSGSLLHRDAQKVVILTAAHCTDAWAGEIAAGTLDSVGVSFDQNNQVNGTTNNATFYVRGGVPISLPAKDAPFEKLDYGLVVFPTNAENAVGQTIFERWGA |
| Ga0075420_1016355022 | 3300006853 | Populus Rhizosphere | VRAKLVVLTVLSVVFVVSPSGAGAITWGRPDVANEYPNVASVRGIVEADNVARVSCSGSLLHRDADKVVILTAAHCTDAWAAEISAGTLDSVGVSFDQNNQVNGSTTDATYYVRGGVPISFPAKDAPFESFDYGLVVFSRSAENTLGQTIQDRWGA |
| Ga0075419_112559411 | 3300006969 | Populus Rhizosphere | HVPYRPRRKPAGIATSGTRSGRRASLRRTVLGLLAVVSLVAPSSAGAITFGQPDLSNEYPNVASVRGIVEAQNLARVSCSGSLLHRDADKVVILTAAHCTDAWAAEIAAGTLDSVGVSFDQNNQVNGTTTNATFYVRGGVPISFPAKDAPFEKFDYGLVVFPTNAENAVGETIAERWGALTP |
| Ga0079218_120095532 | 3300007004 | Agricultural Soil | MRRLVLGLCVVVAAVTASTAVAITWGRLDVNNEYPNVASVRGIVHAQNLARISCSGSLLQRDSEKVVILTAAHCTDAWAGAIAAGTIDSVGVSFDQNNQVNGVTTDGTFYVRGGVPISFPAKDAPFEKFDYGLVAFPADAENA |
| Ga0102946_10861702 | 3300007614 | Soil | MKMKMKLFALLAVLALVFGISSSAHAIIWGTEDLNGDYPNVVSVRGIDEANNSASYSCSGSLLHIDDDKVVILTAAHCTDGWTALIAAGILDSVGVSFDQNNVIGGSFSDATYYVRGGVPISFPQKDAPFEKFDYGMVVFSPNATNSVG |
| Ga0102851_120283252 | 3300009091 | Freshwater Wetlands | MRTKLLALLAVFALTFSFASSARAITWGEPDLNGEYPNVVSVRGIVDSTNTARISCSGSLLHIDRQKVVILTAAHCTDAWAGAIAAGTIDSVGVSFNQNNQINGSFTDATYYVRGGVPISFPAKDAPFEKFDYGLVVFSTSAEN |
| Ga0075418_123089151 | 3300009100 | Populus Rhizosphere | MRAKLAGLFAVVAVVEGVTSSAGAITWGRQDLNNEYPNVASVRGIVEAQNVARISCSGSLLARDASKVVILTAAHCTDAWSAAIAAGTIDSVGVSFDQNNQVNGTTTDATVYVRGGVPISFPAKDAPFDSFDYGLVVFPAGAVNALGQTIQGRWGALSPVQIAPDPGYLSRVISS |
| Ga0075418_125780302 | 3300009100 | Populus Rhizosphere | MNLKGAHAMRTRFLALLAVVALAFSMPSSARAITWGRPDVNNEYPNVASVRGIVDSTNTARISCSGSLLHRDVEKVVILTAAHCTDAWTSAIAAGTIDSVGVSFDQNNQVNGLTTNATYYVRGGVPISFPAKDAPFETFDYGLVVF |
| Ga0075418_131708231 | 3300009100 | Populus Rhizosphere | GLCGVVAAVMASTAFAITFGRPDVNNEYPNVASARGIVHAQNLARISCSGSLLQRDAQKTVILTAAHCTDAWAGAIAAGTIDSVGVSFDQNNQVNGTTTNGTFYVRGGVPISFPAKDAPFERFDYGLVAFPASAVNGVGQTVTGRWGALTPVQVSPTPAYLSNVVD |
| Ga0105247_111107682 | 3300009101 | Switchgrass Rhizosphere | MKFRTKLVGLLATGALALGVAAPAYAITFGRQDLANEFPNVASVRGIVEAQNLARVSCSGSLLSRDATKIVILTAAHCTDAWSAEIAAGTLDSVGVSFDQNNQVNGTTTDATFYVRGGVPISFPAKDAPFETFDYGLVVFPATAQNSIGQTVTQRWGALT |
| Ga0105091_103465232 | 3300009146 | Freshwater Sediment | MRIKLLALLAVVALAFSMSSSARAITWGEPDVNNEYPNVASVRGIVEAQNLARISCSGSLLHSDAEKVVILTAAHCTDAWAGAIAAGTIDSVGVSFDQNNQINGSTTDATYYVRGGVPISFPAKDAPFEKFDYGLVVFSTGAINYLGET |
| Ga0105091_107249441 | 3300009146 | Freshwater Sediment | GVTCEERSGITNSPPEFEARRLGEEIRMRTRLIVLFAVVALIVGVAPGAGAITWGRQDVNNEYPNVASVRGIVEAENLARISCSGSLLQSDADKVVILTAAHCTDSWTGAIAAGTIDSVGVSFDQNNQVNGTTTDATFYVRGGVPISFPAKDAPFETFDYGLVVFPASAENSLG |
| Ga0114129_123747672 | 3300009147 | Populus Rhizosphere | LVVSSVAGAITFGHPDVNNEYPNVASVRGIVEAQNLARISCSGSLIHRDAEKVVILTAAHCTDAWAGAIAAGTIDSVGVSFDQNNQVNGTTTNGTFYVRGGVPISFPAKDAPFETFDYGLVVFPTSAENA |
| Ga0105102_108976061 | 3300009165 | Freshwater Sediment | GFTSIAQAITWGTPDTDGEYPNVVSVRGIVEDENLARLSCSGSLLHIDDDKVVILTAAHCTDGWISAIAAGRLDSVGVSFDQNNVVNDSFTDATNYVRGGVPISLPEKDSPFEKLDYGMVVFSTAAVNFSGETIVGRWGNDPDALTPVQVAPDENYLRQLINRVQHSTA |
| Ga0105104_101508101 | 3300009168 | Freshwater Sediment | MRIKLLALFAVVALAISMSSSARAITWGEPDVNNEYPNVASVRGIVEAQNLARISCSGSLLHRDAEKIVILTAAHCTDAWTGAIAAGTIDSVGVSFDQNNQINGSTTNATYYVRGGVPISFPAKDAPFETFDYGLVVFSASAENALGQTI |
| Ga0105104_108581441 | 3300009168 | Freshwater Sediment | LFAVISLVVSSGAGAITFGEPDVNNAYPNVASVRGIVEAQNLARISCSGSLVHRDAEKVVILTAAHCTDAWAGAIAAGTIDSVGVSFDQNNQVNGTTTNATFYVRGGVPLSFPAKDAPFEKFDYGLVVFSASAENALGQTVSERWGALTPVQ |
| Ga0105097_106930251 | 3300009169 | Freshwater Sediment | MKIRLLALVVVAMTFGFTSIAQAITWGTEDTDGEYPNVVSVRGIVEDENLARLSCSGSLLHIDDDKVVILTAAHCTDGWISAIAAGGLDSVGVSFDQNNVVNGSFTDATYYVRGGVPISLPEKDSPFEKLDYGMVVFSTAAVNFSGETIVERWGNDPDALTPVQVAP |
| Ga0123573_113198342 | 3300009509 | Mangrove Sediment | MKKFVSTFVKSYPNLMKGRNAMRMKLFALLAILALTFGIASRAHAIIWGTEDLDGKYPNVVSVRGIVKGTNIARYSCSGSLLHIDNQKVVILTAAHCTDVWAALIAAGELDSVGVSFDQNNIVNGSNSDATYYVRGGVPISFPQKDAPVEKFD |
| Ga0105249_105842361 | 3300009553 | Switchgrass Rhizosphere | MKFRSKLVGLLGAGALVLGIAAPAYAITFGRQDLANEFPNVASVRGIVEAQNLARVSCSGSLLTRDANKIVILTAAHCTDAWSAEIAAGTLDSVGVSFDQNNQVNGTTTNATFYVRGGVPISFPAKDAPFETFDYGLVVFPANAENSIG |
| Ga0126305_104972482 | 3300010036 | Serpentine Soil | MRTKLVVGLFAVVALIVGMSSPAGAITWGRPDLANEYPNVASVRGIVEADNLARVSCSGSLLQMDAEKIVILTAAHCTDAWAAEIAAGTLDSVGVSFDQNNQVNGTTTDATFYVRGRVPISFPAKDAPFESFDYGLVVFSASAEN |
| Ga0126311_105080141 | 3300010045 | Serpentine Soil | MKVKLFSLFAVLALALSVSSSVRAITWGRPDLNNEYPNVASVRGIVNATNTARISCSGSLLQMDAEKVVILTAAHCTDAWVGAIAAGTIDSVGVSFDQNNQVNGTTTNATYYVRGGVPISFPAKDAPFE |
| Ga0118731_1029124721 | 3300010392 | Marine | MRTRLAIFLSVALVVLAASSAAFAITWGEEDLDGEHPNVASVRGVDEATNTVRFSCSGSLLHADEVKIVVLTAAHCTDGWIGQIAAGNLDTVGVSFDQNNVIGGSFSDATYYVRGGVPISFPAKDAPFEKF |
| Ga0118731_1064662561 | 3300010392 | Marine | MFDMFKKALILLVILVAFTATSTVLAITWGREDLNGEYPNVASVRGIIEETNTARGSCSGSLLHVDDQKIVILSAAHCTDFWTAFIAAGIFDSVGVSFDQNNVIDGSFSDATFYVRGGVPISFPAKDAPFEKQKQKTG* |
| Ga0136851_110149991 | 3300010413 | Mangrove Sediment | MRTKLFALLVVVVLALGTSSIAQAITWGEQDLNGEYPNVVSVRGIVEAENRALRSCSGSLLHIDSQKVVILTAAHCTDGWTALIAAGSLDSVGVSFDQNNVIDGSFSDATYYVRGGVPISLPEKDAPFEKLDYGMVVFSTSATNTLGETIEERWGGIPGALTPVQVAPDKEY |
| Ga0118733_1006192241 | 3300010430 | Marine Sediment | MRIRFAALLSVALVVVAASSALAITWGVEDLDGEYPNVASVRGVVEATNTVRSSCSGSLLHVDEQKTVILTAAHCTDSWTGQIAAGSLDSVGVSLDQNNVIAGSFSDATFYVRGGVPVSFPAKDAPFEKFDYGMVVFEADAVNTVGQTIE |
| Ga0118733_1042989191 | 3300010430 | Marine Sediment | MKGRTAMRSKLLALLAVVVLAFGTWSMAQAITWGQEDLDGEYPNVVSVRGVVEADNRASTSCSGSLLHIDSDKVVILTAAHCTDAWMERIAAGSLDSVGVSFDQNNVVDESFSDATYYVRGGVPISLPEKDSP |
| Ga0105246_114347191 | 3300011119 | Miscanthus Rhizosphere | MKFRSKLVGLLGAGALVLGIAAPAYAITFGRQDLANEFPNVASVRGIVEAQNLARVSCSGSLLTRDANKIVILTAAHCTDAWSAEIAAGTLDSVGVSFDQNNQVNGTTTDATYYVSGGVPISFPAKDAPFETFDYGLVVFDASAENTLGQT |
| Ga0120191_100304031 | 3300012022 | Terrestrial | LFAVVTLVVSSGAGAITFGQPDVNNEYPNVASVRGIVEAQNLARISCSGSLVHRDAEKVVILTAAHCTDAWAGAIAARTIDSVGVSFDQNNQVNGTTTNATFYVRAGVPISFPAKDAPFETFDYGLVVFSASAENAIGQTIS |
| Ga0150985_1053182031 | 3300012212 | Avena Fatua Rhizosphere | MKFRTKLIGSLGAAALVLGVAAPAGAITWGRPDRGNEYPNVASVRGIVESKNLARVSCSGSLLSRDAQKIVILTAAHCTDAWIGEIAAGTLDSVGVSFDQNNQVNGSTSDATVYLRGGVPISFPAKDAPFETFDYGLVVFPANATNSLGQTITARWGALSPVRIAPDP |
| Ga0137373_105706431 | 3300012532 | Vadose Zone Soil | MRTKLLAVLDVVAMAVSMSSSARAITWGEPDVNNEYPNVASVRGIVDATNTARISCSGSLLHRDAEKVVILTAAHCTDAWTGAIAAGTIDSVGVSFDQNNQINGTTTNATYYVRGGVPISFPAKDAPFETFDYGLIVFSTTAQHSLGQTIQPRWGALAALR |
| Ga0157302_102420031 | 3300012915 | Soil | LLAVVSLAVPSTAGAITFGQPDVNNQYPNVASVRGIDEAQNVARVSCSGSLLHRDAQKVVILTAAHCTDAWAGEIAAGTLDSVGVSFDQNNQVNGTTNNATFYVRGGVPISLPAKDAPFEKLDYGL |
| Ga0153915_101062981 | 3300012931 | Freshwater Wetlands | MRTKLLALLAVFALTFSFASSARAITWGEPDLNGEYPNVVSVRGIVDSTNTARISCSGSLLHIDRQKVVILTAAHCTDAWAGAIAAGTIDSVGVSFDQNNQINGSFTDATYYVRGGIPISFPAKDAPFERFDYGLV |
| Ga0162653_1000468261 | 3300012937 | Soil | VRTRLVVVFAVVGLVVGMSSSAGAITWGRPDVNNEYPNVASVRGIVEAENVARISCSGSLLQRDADKVVILTAAHCTDAWADAIAAGTIDSVGVSFDQNNQVNGTTTDATFYVRGGVPISFPAKDAPFETFDYGLVVFSASAENSLGQTVQERWGSLTPVQVAPDPGYLSG |
| Ga0075311_11131401 | 3300014259 | Natural And Restored Wetlands | MDDPREREKGQRNNMKTKVTTFIALLFVLMSASSAALAITWGEEDLGGQYPNVASVRGIDEATNTARSSCSGSLLHADEHKVVLLTAAHCTDGWIGQIAAGNLDSVGVSFDQNNVIAGSFSDATYYVRGGVPISFPAKDAPFEKFDYGLVVFPTDAVNTLGQTIA |
| Ga0075344_11171461 | 3300014296 | Natural And Restored Wetlands | MRSRCSALLAVVVLAFATSPVARAITWGEEDTTGEFPNAVSVRGIVEAENTARASCSGSLLHIDADKVVILTAAHCTDSWMALIAAGSVASVGVSFEPDNVIGGSISNATYYVRGGVPISLPAKDAPFEKLDYGMVVFSTARPSRAG* |
| Ga0157380_119507362 | 3300014326 | Switchgrass Rhizosphere | MKFRTKLVGLLATGALALGVAAPAYAITFGRQDLANEFPNVASVRGIVEAQNLARVSCSGSLLSRDATKIVILTAAHCTDAWSAEIAAGTLDSVGVSFDQINQVNGTTTDATFYVRGGVPISFPAKDAPFETFDYGLVVFPATAQNSIGQTVTQRWGAL |
| Ga0182000_102171791 | 3300014487 | Soil | MSSSAEAITWGRPDVNNEYPNVASVRGISDAVNVARISCSGSLLQRDADKVVILTAAHCTDAWRAAIAAGTIDSVGVSFDQNNQVNGTTTDATYYVRGGVPISFPAKDAPFESFDYGL |
| Ga0157377_114603071 | 3300014745 | Miscanthus Rhizosphere | MASSASAITWGRADVNNEYPNVASVRGIVEAQNVARISCSGSLLEMDADKVVILTAAHCTDAWSGAIAAGTIDSVGVSFDQNNQVNGTTTDATYYVSGGVPISFPAKDAPFETFDYGLVVFDASAENTLGQTVHDRWGAL |
| Ga0173483_103925192 | 3300015077 | Soil | LFVIGTLALGVSSGVSAITWGRQDVNNEYPNVASLRGVVESTNTARVSCSGSLLHSDAEKIVILTAAHCTDAWTENIEAGALDTVGVSFDQNNQVNGTTTDATVYLRGGIPISFPAKDAPFETFDYGLVVFPADAENALGQTLTDRWGQLTPVQIAPNAGYLSSVIS |
| Ga0132258_127283462 | 3300015371 | Arabidopsis Rhizosphere | VKTKSLALLAVVTLTFSMSISTHAITWGEPDVNNEYPNVASVRGVVDAVNLARISCSGSLLHTDAEKVVILTAAHCTDAWAGAIAVGTLDSVGVSFDQNNQINGSITDATYYVRGGVPISFPAKDAPFESFDYGLVVFAASAENAVGQTIQERWGALTPVQVPPNKDYVSD |
| Ga0132255_1005241122 | 3300015374 | Arabidopsis Rhizosphere | VGIGAVLVLAIGMSSSASAITFGVQDVNNAYPNVASVRGVVAAQNLARISCSGSLLQRDATKVVILTAAHCTDAWKAAIAAGTIDSVGVSFDQNNQVNGSTSDARFYVRGGVPISFPAKDAPFETFDYGLVVFPAGATNSIGQTVQQRWGALSPVQVAPTPAYLPGVIK |
| Ga0132255_1038209061 | 3300015374 | Arabidopsis Rhizosphere | MRTKLLAVFAAIALAISVSSSARAITWGRPDVNNEYPNVASVRGIVDATNTARISCSGSLLSRDADKVVILTAAHCTDAWTGAIAAGTINSVGVSFDQNNQVNGTTANATYYVRGGVPISFPAKDAPFETFDYGLVVFSAIAENSLGQTIQERWGALTPVQVA |
| Ga0132255_1041016821 | 3300015374 | Arabidopsis Rhizosphere | VKTKSLALLAVVTLTFSMSISTHAITWGEPDVNNEYPNVASVRGVVDAVNLARISCSGSLLHTDAEKVVILTAAHCTDAWAGAIAVGTLDSVGVSFDQNNQINGSITDATYYVRGGVPISFPAKDAPFESFDYGLVVFAASAENAVGQTIQERWGALTPVQVPPNKDYV |
| Ga0184608_101504602 | 3300018028 | Groundwater Sediment | MRTRFVGLFAVGALVVGMSSSAGAITWGRADVNNEYPNVASVRGIVEAQNVARISCSGSLLHRDANKVVILTAAHCTDAWAGAIAAGTIDSVGVSFDQNNQVNGTTTDATYYVRGGVPISFPAKDAPFEKFDYGLVVFDASAENSLGQTVQDRWGALTPVQVAPGPGYVSGV |
| Ga0190275_113246891 | 3300018432 | Soil | MRKTIGSLFLSTALIVGFAATTSAITWGRPDLAEEYPNVASVRGIVEADNVARISCSGSLLQSDADKVVILTAAHCTDGWIEAIAAGTIDSVGVSFDADNQVDGSTSDGTVYVRGGVPISFPAKDAPFETFNYGLVVFPADATNRLGETIEQRW |
| Ga0190268_123493971 | 3300018466 | Soil | DSHLQNSKHIDGGDGKRTRLLVGLFAVVAMVVGMPSSAGAITWGRPDVNNEYPNVASVRGIVEAENVARVSCSGSLLQRDADKVVILTAAHCTDAWTAEIAAGTLDSVGVSFDQNNQVNGTTTDATFYVRGGVPISFPAKDAPFDSFDYGLVVFSTSAENTLGQTIQ |
| Ga0190270_112921431 | 3300018469 | Soil | MRKRVNLQRRRTMRRHLVGATLCVVVAAVMASTAVAITWGRADVNNEYPNVASVRGIVEAQNLARISCSGSLLQRDSEKVVILTAAHCTDAWAGAIAAGAIDSVGVSFDQNNQVNGTTTNGTFYVRGGVPISFPAKDAPFEK |
| Ga0190271_126964611 | 3300018481 | Soil | MLGEHALIPRLGLCRPQIVDAHQNGGTTVRTRVVTLFVVGSLALAMSSSASAITWGRPDANNEYPNVASVRGIVEATNTAQISCSGSLLHRDQEKVVILTAAHCTDAWVGAIASGTIDSVGVSFDQNNQVSGTTTNATFYVRGG |
| Ga0193739_11477271 | 3300020003 | Soil | MKKRSAAILAIAALVVGMSSNADAITWGRPDVNNEYPNIASVRGVVEAQNVARISSSGSLLHTDVDKVVILTAAHCTDAWADAIAAGVIDSVGVSFDQNNQVNGTTTDATFYVRGGVPISFPAKDAPFETFDYGLVVFSASAENSLGQTIQERWGALTP |
| Ga0224495_103902471 | 3300022208 | Sediment | MKTKLLALLVVVALTFGMTSIALAITWGDPDLNGEYPNVVSVRGIVEAENRAAGSCSGSLLHIDSQKVVILTAAHCTDSWTARIAAGSLDSVGVSFDQDNVINGSISDATYYVRGGVPISLLQKDAPFEKLDYGMVVFSTDAVNLPGATIKQRWGGIPGALTPVQVSPDKEYLP |
| Ga0224509_102978311 | 3300022306 | Sediment | MRTRLATILSFALVVMAASSAAFAITWGVEDLDGEYPNVASVRGIVEETNTARSSCSGSLLHADEQKIVVLTAAHCTDGWTAQIAAGSLDSVGVSFDQNNVIDGSFSDATNYVRGGVPVSFPAKDAPFEKFDYGMVVFSVDAVN |
| Ga0209108_100974921 | 3300025165 | Soil | MRTKLLVLLAVGALAFSMSSIAQAITWGEPDVNGEYPNVVSVRGYVAATHTVRISCSGSLLHTDAEKVVILTAAHCTDAWIGAIGAGSINSVGVSFDQNNVIGEVITDGTYYVGDGVPLSLPAKDAPFEKLDYGLVV |
| Ga0209641_109676341 | 3300025322 | Soil | MRTKLLALLAVVTLAFSTSSIAQAITWGEEDLQGAYPNVVSVRGIVEATNTARVSCSGSLLHIDDAKVVILTAAHCTDFWSAEIAAGRLNSVGVSFDQNNVIDGSFSDATYYVRGGVPISLPQKDAPFEKFDYGMVVFSIHAANSLGETVPDRWGGTTGALTPVQLPPDKE |
| Ga0207688_101438521 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | MKFRSKLVGLLGAGALVLGIAAPAYAITFGRQDLANEFPNVASVRGIVEAQNLARVSCSGSLLTRDANKIVILTAAHCTDAWSAEIAAGTLDSVGVSFDQNNQVNGTTTNATFYVRGGVPISFPAKDAPFETFDYGLVVFPANAQNSIGQTVTQRWGALTPVQI |
| Ga0207701_115619851 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | SLTTGGSIVRTRLLTLFVIGTLALGVSSGVSAITWGRQDVNNEYPNVASLRGVVESTNTARVSCSGSLLHRDAEKIVILTAAHCTDAWTGNIDAGALDTVGVSFDQNNQVNGTTTDATVYLRGGVPISFPAKDAPFETFDYGLVVFPADAENALGQTLTDRWGQLTPVQIAPNAGYL |
| Ga0207709_110301771 | 3300025935 | Miscanthus Rhizosphere | MKFRTKLVGLLATGALALGVAAPAYAITFGRQDLANEFPNVASVRGIVEAQNLARVSCSGSLLSRDATKIVILTAAHCTDAWSAEIAAGTLDSVGVSFDQNNQVNGTTTDATFYVRGGVPISFPAKDAPFETFDYGLVVFPATAQNSIGQTVTQRWGALTPVRIAPDPG |
| Ga0207669_101875171 | 3300025937 | Miscanthus Rhizosphere | MKFRTKLVGLLATGALALGVAAPAYAITFGRQDLANEFPNVASVRGIVEAQNLARVSCSGSLLSRDATKIVILTAAHCTDAWSAEIAAGTLDSVGVSFDQNNQVNGTTTDATFYVRGGVPISFPAKDAPFETFDYGLVVFPATAQNSIGQTVTQRWGALTPVRIAPEPGYLS |
| Ga0209392_11338581 | 3300027683 | Freshwater Sediment | MKIRLLALVVVAMTFGFTSIAQAITWGTEDTDGEYPNVVSVRGIVEDENLARLSCSGSLLHIDDDKVVILTAAHCTDGWISAIAAGGLDSVGVSFDQNNVVNGSFTDATYYVRGGVPISLPEKDSPFEKLDYGMVVFSTDAENSLGETIEERWGTLTPVQVA |
| Ga0209819_100834151 | 3300027722 | Freshwater Sediment | MRIKLLAVFAVVALAISISSSAGAITWGRPDVNNEYPNVASVRGIVEAQNLARISCSGSLLHRDAEKIVILTAAHCTDGWTSAIAAGTIDSVGVSFDQNNQINGSTTDATYYVRGGVPISFPAKDAPFEKFDYGLVVFSTSAENT |
| (restricted) Ga0233416_103252881 | 3300027799 | Sediment | MIYTVFIHHHGLAQSWREITTNLKGRAAMKTRLLALLVVVGLALSITSIAQAITWGRPDLNGEYPNVASVRGIVEAENRARISCSGSLLHIDSQKVVILTAAHCTDAWTATIAAGGIDSVGVSFDQDNVVNGSTSDATYYVRGGVPVSLPAKDAPFEKL |
| Ga0247828_102193022 | 3300028587 | Soil | VGLVAVVALVVGLSSNAGAITWGRPDVNNEYPNVVSVRGIVDAQNLARLSCSGSLLAMDADKVVILTAAHCTDAWAAEIAAGTLDSVGVSFDQNNQVNGSTTDATYYVRGGVPISFPAKDAPFETFDYGLVVFSTSAENAVGQTVEERWGAPAPVQVAPDPGYLTSVIS |
| Ga0307503_105864692 | 3300028802 | Soil | MKLRIKLVGLVGASALVLGVAAPVGAITWGRPDLANEYPNVASVRGIVESQNLARVSCSGSLLARDATKIVILTAAHCTDAWSDEIAAGTLDSVGVSFDQNNQVNGTTTDATFYVRGGVPISFPAKDAPFETFDYGLVVFAADAANSHGETVA |
| Ga0247825_111756091 | 3300028812 | Soil | VRTRLVVGLVAVVALVVGLSSNAGAITWGRPDVNNEYPNVVSVRGIVDAQNLARLSCSGSLLAMDADKVVILTAAHCTDAWAAEIAAGTLDSVGVSFDQNNQVNGSTTDATYYVRGGVPISFPAKDAPFETFDYG |
| Ga0268386_104854941 | 3300030619 | Soil | MRTRLIVLFAVVALIVGVAPGAGAITWGRQDVNNEYPNVASVRGIVEAENLARISCSGSLLQSDADKVVILTAAHCTDAWTGAIAAGTIDSVGVSFDQNNQVNGTTTDATFYVRGGVPISFPAKDAPFETFDYGLVVFPASAENSLGQTIQERWGALT |
| Ga0307506_101532521 | 3300031366 | Soil | MKLKTTLVGAFGALAVVLSTSVPAGAITFGRPDLGNEFPNVASVRGIVDAANLARISCSGSLLSRNADTIVILTAAHCTDAWTDAIAAGTIDSVGVSFDQNNQINGSVSDATFYVRGGVPISFPAKDAPFETFDYGLVVFPADAVNSVGQ |
| Ga0307405_121478181 | 3300031731 | Rhizosphere | LMGMRRLLVGLSVVAAVVLGTASSAVAITWGTPDVNNKYPNVASVRGIVEADNLARISCSGSLLQMDADKVVILTAAHCTDAWQDAIATGTIDSVGVSFDQNNQVNGTTTDATYYVRGGVPISFPAKDAPFETFDYGLVVFPADAENTLGQTIQERWGALTPVQIAP |
| Ga0307413_105410132 | 3300031824 | Rhizosphere | MGMRRLLVGLSVVAAVVLGTASSAAAITWGTPDVNNEYPNVASVRGIVEADNLARISCSGSLLQMDADKVVILTAAHCTDAWQDAIAAGTIDSVGVSFDQNNQVNGTTTDATYYVRGGVPISFPAKDAPFETFDYGLVVFPADAENTLGQ |
| Ga0214473_109314511 | 3300031949 | Soil | MRIKLFALLAVIALVFGVTSKAQAITWGEPDLNGQYPNVVSVRGIVEAENRARVSCSGSLLHVDSLKVVILTAAHCTDAWTAEIAAGGLDSVGVSFDQNNVINGSFSDATYYVRGGVPISLPEKDAPFEKLDYGLVVFSTGATNAEGETIAQRWGGNPAALTPVQVPPGKEYVPDLINLV |
| Ga0307416_1024838531 | 3300032002 | Rhizosphere | MSVRRLLVGLSVVAAGVLGTASSAAAITWGTPDVNNQYPNVASVRGIVEADNIARISCSGSLLYRDADKVVILTAAHCTDAWQDAIAAGTIDSVGVSFDQNNQVNGSTTDATYYVRGGVPISFPAKDAPFESFDY |
| Ga0307416_1038619251 | 3300032002 | Rhizosphere | MRRLVFGLSVVVAAVMASTAVAITWGRPDVNNEYPNVASVRGIVQAQNLARVSCSGSLLQRDVQKVVILTAAHCTDAWAGAIAARTIDSVGVSFDQNNQVNGTITNGTFYVRGGVPISFPAKDAPFEKFDYGLVAFPADAENAVGQTVAERWG |
| Ga0307411_112522801 | 3300032005 | Rhizosphere | MGMRRLLVGLSVVAAVVLGTASSAAAITWGTPDVNNEYPNVASVRGIVEADNLARISCSGSLLQMDADKVVILTAAHCTDAWQDAIAAGTIDSVGVSFDQNNQVNGTTTDATYYVRGGVPISFPAKDAPFETFDYGLVVFPADAENTLGQTIQERWGALTPVQIA |
| Ga0310889_103735201 | 3300032179 | Soil | MKAKLVGTFASAALLVGLASSAGAITWGRLDDGNEYPNVASVRGIVEQQNVARISCSGSLLASDADKVVILTAAHCTDAWVDAIAAGTIDSVGVSFDLNNQVNGTTTDATFYVRGGVPISYPAKDAPFDSFDYGL |
| Ga0307417_103527551 | 3300033291 | Salt Marsh | MRTRLTTVVALVFVLMAVSSAAFAITWGDEDLGGEYPNVASVRGIVEADNLARYSCSGSLLYADDDKVVLLTAAHCTDGWTGQIALGSLDSVGVSFDVNNVIGGDFSDATYYVRGGVPISFPAKDAPFEKFDYGLVVFPADAENSMGETIADRWGSLTPVQ |
| Ga0316586_10992421 | 3300033527 | Rhizosphere | MKVKGLAFLAAAVLLLGISSVAYAITWGREDLNGEYPNVVSVRGVVEATNTARYSCSGSLLNIDADKVVILTAAHCTDSWIAAIGAGILNTVGVSFDQNNVINGSFSDATHYVRGGVPISFPAKDAPFEKFDYGLVVFAKTDVNFD |
| Ga0247830_111499371 | 3300033551 | Soil | MKAKLVGTFASAALLVGLASSAGAITWGRLDDGNEYPNVASVRGIVEQQNVARISCSGSLLASDADKVVILTAAHCTDAWADAIAAGTIDSVGVSFDLNNQVNGTTTDATFYVRGGVPISYPAKDAPFDSFDYGLVVFPSDAE |
| Ga0314798_144724_2_424 | 3300034673 | Soil | MKIKILGVLAILALATSMVSSAFAITWGRPDVNNEYPNVASVRGIIEATNTAATSCSGSLLYRDADKFVILTAAHCTDAWTSLIAAGQRDSVGVSFDQNNQVNGSTTDATYYVRGGVPISFPAKDAPFETFDYGLVVFSTA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |