Metagenome / Metatranscriptome Family F092893

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092893
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	75 residues
Representative Sequence	MLLWDARVDREASYEARIDAAFDQADAHADAGEFEQALEWLSEAEDLAGGLPDAYGELRKQWISYLAPLAVVVRRR
Number of Associated Samples	80
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.31 %
% of genes near scaffold ends (potentially truncated)	19.63 %
% of genes from short scaffolds (< 2000 bps)	83.18 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.243 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (17.757 % of family members)
Environment Ontology (ENVO)	Unclassified (28.037 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.925 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.50% β-sheet: 0.00% Coil/Unstructured: 37.50%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF13581	HATPase_c_2	25.23
PF03176	MMPL	18.69
PF03861	ANTAR	8.41
PF02803	Thiolase_C	0.93
PF00313	CSD	0.93
PF00501	AMP-binding	0.93
PF01734	Patatin	0.93
PF12681	Glyoxalase_2	0.93
PF00155	Aminotran_1_2	0.93
PF00561	Abhydrolase_1	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	18.69
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	18.69
COG3707	Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains	Transcription [K]	8.41
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.93
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.93
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.93
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.93

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.24 %
Unclassified	root	N/A	17.76 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.24 %
Unclassified	root	N/A	17.76 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.24 %
Unclassified	root	N/A	17.76 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	82.24 %
Unclassified	root	N/A	17.76 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	81.31 %
Unclassified	root	N/A	17.76 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	29.91 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	26.17 %
Unclassified	root	N/A	17.76 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	29.91 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	23.36 %
Unclassified	root	N/A	17.76 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	0.93 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	29.91 %
Unclassified	root	N/A	17.76 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	1.87 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	1.87 %
Patulibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae	0.93 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	29.91 %
Unclassified	root	N/A	17.76 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1.87 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.93 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.93 %
Patulibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter	0.93 %
Thermoleophilum	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum	0.93 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	29.91 %
Unclassified	root	N/A	17.76 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1.87 %
Patulibacter medicamentivorans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → Patulibacter medicamentivorans	0.93 %
Thermoleophilum album	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	0.93 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.93 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000363\|ICChiseqgaiiFebDRAFT_13487810	Not Available	591	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100680143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1253	Open in IMG/M
3300000550\|F24TB_10512675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	760	Open in IMG/M
3300001431\|F14TB_104096825	Not Available	628	Open in IMG/M
3300003993\|Ga0055468_10179869	Not Available	643	Open in IMG/M
3300004114\|Ga0062593_100756809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	958	Open in IMG/M
3300004156\|Ga0062589_100334223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1192	Open in IMG/M
3300004156\|Ga0062589_100991443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	784	Open in IMG/M
3300004157\|Ga0062590_100157271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1569	Open in IMG/M
3300004157\|Ga0062590_100997136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	796	Open in IMG/M
3300004157\|Ga0062590_101698661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	643	Open in IMG/M
3300004463\|Ga0063356_100279493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2051	Open in IMG/M
3300004463\|Ga0063356_104946151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	573	Open in IMG/M
3300004643\|Ga0062591_102134389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	581	Open in IMG/M
3300005093\|Ga0062594_101339498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	721	Open in IMG/M
3300005280\|Ga0065696_1041815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → Patulibacter medicamentivorans	514	Open in IMG/M
3300005328\|Ga0070676_10226413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1237	Open in IMG/M
3300005341\|Ga0070691_10165242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1144	Open in IMG/M
3300005345\|Ga0070692_11138334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	553	Open in IMG/M
3300005347\|Ga0070668_100057431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3007	Open in IMG/M
3300005366\|Ga0070659_100690656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	882	Open in IMG/M
3300005441\|Ga0070700_100136941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1659	Open in IMG/M
3300005546\|Ga0070696_100128909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1839	Open in IMG/M
3300005842\|Ga0068858_102152587	Not Available	551	Open in IMG/M
3300006049\|Ga0075417_10724981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	512	Open in IMG/M
3300006058\|Ga0075432_10061572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1337	Open in IMG/M
3300006844\|Ga0075428_101226851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	790	Open in IMG/M
3300006846\|Ga0075430_101739065	Not Available	512	Open in IMG/M
3300006847\|Ga0075431_100938157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	834	Open in IMG/M
3300006852\|Ga0075433_10764521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	845	Open in IMG/M
3300006853\|Ga0075420_100794693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	815	Open in IMG/M
3300006854\|Ga0075425_102226031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	610	Open in IMG/M
3300006876\|Ga0079217_10015574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2568	Open in IMG/M
3300006918\|Ga0079216_10527541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	789	Open in IMG/M
3300009093\|Ga0105240_12091084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	588	Open in IMG/M
3300009094\|Ga0111539_13028959	Not Available	543	Open in IMG/M
3300009094\|Ga0111539_13044577	Not Available	541	Open in IMG/M
3300009100\|Ga0075418_10511195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1290	Open in IMG/M
3300009100\|Ga0075418_10619914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1164	Open in IMG/M
3300009100\|Ga0075418_10685579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1104	Open in IMG/M
3300009100\|Ga0075418_11340619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	776	Open in IMG/M
3300009147\|Ga0114129_10512424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1565	Open in IMG/M
3300009156\|Ga0111538_11283744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	924	Open in IMG/M
3300009789\|Ga0126307_10010016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	6855	Open in IMG/M
3300009789\|Ga0126307_10036274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	3814	Open in IMG/M
3300009789\|Ga0126307_10177152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1709	Open in IMG/M
3300009840\|Ga0126313_10065078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2610	Open in IMG/M
3300009840\|Ga0126313_10244073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1392	Open in IMG/M
3300009840\|Ga0126313_10284046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1290	Open in IMG/M
3300009840\|Ga0126313_10681998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	832	Open in IMG/M
3300010037\|Ga0126304_10087044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1957	Open in IMG/M
3300010039\|Ga0126309_10165487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1200	Open in IMG/M
3300010039\|Ga0126309_10202013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1101	Open in IMG/M
3300010039\|Ga0126309_10515429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	738	Open in IMG/M
3300010039\|Ga0126309_11280091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	507	Open in IMG/M
3300010040\|Ga0126308_10712361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	691	Open in IMG/M
3300010040\|Ga0126308_10838645	Not Available	638	Open in IMG/M
3300010040\|Ga0126308_11253045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	526	Open in IMG/M
3300010042\|Ga0126314_10254255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1247	Open in IMG/M
3300010044\|Ga0126310_10010513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4287	Open in IMG/M
3300010166\|Ga0126306_11026448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	673	Open in IMG/M
3300010399\|Ga0134127_11618388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	722	Open in IMG/M
3300010403\|Ga0134123_10092588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2386	Open in IMG/M
3300012204\|Ga0137374_10050286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4301	Open in IMG/M
3300012914\|Ga0157297_10405154	Not Available	548	Open in IMG/M
3300013306\|Ga0163162_10106364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2901	Open in IMG/M
3300015371\|Ga0132258_10922393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2205	Open in IMG/M
3300015371\|Ga0132258_13007603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1168	Open in IMG/M
3300015372\|Ga0132256_101499192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	785	Open in IMG/M
3300015373\|Ga0132257_100724701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1237	Open in IMG/M
3300018422\|Ga0190265_11977362	Not Available	689	Open in IMG/M
3300018469\|Ga0190270_10054429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2806	Open in IMG/M
3300018469\|Ga0190270_12246981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	606	Open in IMG/M
3300019279\|Ga0184642_1086577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	554	Open in IMG/M
3300025901\|Ga0207688_10295318	All Organisms → cellular organisms → Bacteria → Terrabacteria group	990	Open in IMG/M
3300025907\|Ga0207645_10133054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1619	Open in IMG/M
3300025937\|Ga0207669_11716941	Not Available	536	Open in IMG/M
3300025961\|Ga0207712_10336349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1251	Open in IMG/M
3300025972\|Ga0207668_10097683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2174	Open in IMG/M
3300025981\|Ga0207640_10816032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	809	Open in IMG/M
3300026121\|Ga0207683_11887015	Not Available	546	Open in IMG/M
3300027637\|Ga0209818_1090820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	796	Open in IMG/M
3300027907\|Ga0207428_10427659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	967	Open in IMG/M
3300027909\|Ga0209382_10085797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3705	Open in IMG/M
3300027909\|Ga0209382_11710971	Not Available	617	Open in IMG/M
3300028578\|Ga0272482_10308276	Not Available	513	Open in IMG/M
3300028597\|Ga0247820_10392889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	927	Open in IMG/M
3300028705\|Ga0307276_10040160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1006	Open in IMG/M
3300028744\|Ga0307318_10007263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3577	Open in IMG/M
3300028744\|Ga0307318_10304837	Not Available	558	Open in IMG/M
3300028771\|Ga0307320_10279319	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	661	Open in IMG/M
3300028812\|Ga0247825_10897568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	642	Open in IMG/M
3300031548\|Ga0307408_100246478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1471	Open in IMG/M
3300031548\|Ga0307408_100415231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1159	Open in IMG/M
3300031548\|Ga0307408_102349640	Not Available	517	Open in IMG/M
3300031731\|Ga0307405_11646793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	567	Open in IMG/M
3300031824\|Ga0307413_11024671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	709	Open in IMG/M
3300031852\|Ga0307410_11282152	Not Available	640	Open in IMG/M
3300031911\|Ga0307412_12197354	Not Available	514	Open in IMG/M
3300031995\|Ga0307409_100091968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2488	Open in IMG/M
3300031995\|Ga0307409_100225692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1694	Open in IMG/M
3300032002\|Ga0307416_100061666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3062	Open in IMG/M
3300032002\|Ga0307416_100489836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1291	Open in IMG/M
3300032005\|Ga0307411_11857378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	560	Open in IMG/M
3300032126\|Ga0307415_100841751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	841	Open in IMG/M
3300033550\|Ga0247829_10067212	Not Available	2590	Open in IMG/M
3300033550\|Ga0247829_11618126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	534	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	51.40%
Host-Associated	Host-Associated	48.60%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	49.53%
Plants	Host-Associated → Plants	48.60%
Aquatic	Environmental → Aquatic	1.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.53%
Rhizosphere	Host-Associated → Plants → Rhizosphere	38.32%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.28%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Marine	Environmental → Aquatic → Marine	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	31.78%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.54%
Loam	Environmental → Terrestrial → Soil → Loam	5.61%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.74%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.93%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	31.78%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.10%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.61%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.93%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	17.76%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	16.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	12.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	7.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.80%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.87%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.87%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.93%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.93%
Switchgrass Rhizosphere Bulk Soil	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere Bulk Soil	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005280	Switchgrass rhizosphere microbial community from Michigan, USA - East Lansing bulk soil	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027637	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028578	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_134878102	3300000363	Soil	MLLWDARVAHEAAHEARTESAFDKAEAHALNGELELALESLSEAEDLSGGLPVAYVELREGWIAALAPLAVVVRR*
INPhiseqgaiiFebDRAFT_1006801433	3300000364	Soil	VLLWDARIAREAAHEARTEAAFDQAEEYASAGNLERALEALSEAEDLAGGLPDEYIALREHWISLLAPLAVVVRR*
F24TB_105126751	3300000550	Soil	MLLSDARVAHEAGYEARIDAAFDQAEAHAHAGHFEQALEWLSQAEDLSGGLPDAYLELRESWISHLAPLAVVVRR*
F14TB_1040968251	3300001431	Soil	MLLWDARVAREASYEARIDAAFDQAEAHAHAGHFEQALEWLSQAEDLSGGLPDAYLELRESWISHLAPLAVVVRR*
Ga0055468_101798692	3300003993	Natural And Restored Wetlands	MYLSDRDVAREARYEARIDTAFDQADDHARAGRLERALEALSEAEDLAGGLPDYYIALRKRWIASLAPLAVVVRR*
Ga0062593_1007568092	3300004114	Soil	MLEWDAKVAREVRHEARIETAFDQADAHARAGNLEDALGWLSEAEDLGGGLPDTYIELRKHWIASLAPLAVVVRR*
Ga0062589_1003342231	3300004156	Soil	EAVHEARTEAAFDEAEEHAKAGNLESALEALSEAEDLAGGLPDEYIALREHWISLLAPLAVVVRR*
Ga0062589_1009914431	3300004156	Soil	MLLWDARVAREAAHEARTEAAFDEAEEHAGAGNLESALEALSEAEDLAGGLPDEYTRLREHWISLLAPLAIVARR*
Ga0062590_1001572713	3300004157	Soil	MLEWDAKVAREVRHEARIETAFDQADAHARAGNLEDALAWLSEAEDLGGGLPDTYIELRKHWIASLAPLAVVVRR*
Ga0062590_1009971362	3300004157	Soil	MLLWDARVAREAAHEARTEAAFDEAEEHASAGNLESALEALSEAEDLAGGLPDEYIALREHWISQLAPLAVVARR*
Ga0062590_1016986611	3300004157	Soil	MLLWDARVAREASYESRIEAAFDQAESQGLAGNYEQALEWLSEAEDLSGGLPDAYSEQRERWISYLAPLVIVARR*
Ga0063356_1002794932	3300004463	Arabidopsis Thaliana Rhizosphere	MLLWDARVAHEAAHEARTESAFDKAEAHALNGELELALESLSEAEDLSGGLPDAYVELREGWIAALAPLAVVVRR*
Ga0063356_1049461511	3300004463	Arabidopsis Thaliana Rhizosphere	MSEWDAHVAREARHEARTEAAFDQADAHAGAGNLEEAIGWLSQAEDLAGGLPDEYIELRKRWIASLAPLAVVVRR*
Ga0062591_1021343892	3300004643	Soil	MLLWDARVAREAAHEARTEAAFDEAEEHAKAGNLESALEALSEAEDLAGGLPDEYIALREHWISLLAPLAVVVRR*
Ga0062594_1013394982	3300005093	Soil	MLLWDARVAREARYEARIEAAFDQAEAHADAGHFEQALDWLSEAEDLSGGLPDEYIKLRERWISHLAPLAIVTHR*
Ga0065696_10418151	3300005280	Switchgrass Rhizosphere Bulk Soil	MLLWDARVDREASYEARIDTAFDQAEAHADAGEFEQALEWLSEAEDLAGGLPDAYSALRKQWISYLAPLAVVVRRR*
Ga0070676_102264132	3300005328	Miscanthus Rhizosphere	MLLWDARVDREASYEARIDAAFDQADAHADAGEFEQALEWLSEAEDLAGGLPDGYSELRKQWISYLAPLAVVVRRR*
Ga0070691_101652423	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MLLWDACVDREASYEARIDAAFDQADAHADAGEFEQALEWLSEAGDLAGGLPDGYSELRKQWISYLAPLAVVVRRR*
Ga0070692_111383342	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MLLWDARVDREASYEARIDAAFDQADAHADAGEFEQALEWLSEAEDLAGGLPDSYSELRKQWISYLAPLAVVVRRR*
Ga0070668_1000574313	3300005347	Switchgrass Rhizosphere	MLLWDARVDREASYEARIDAAFDQADAHADAGEFEQALEWLSEAEDLAGGLPDAYGELRKQWISYLAPLAVVVRRR*
Ga0070659_1006906563	3300005366	Corn Rhizosphere	EASYEARIDAAFDRAEADADAGHIEQALAWLSEAEDLAGGLPDGYSELRKQWISYLAPLAVVVRRR*
Ga0070700_1001369412	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MLLWDACVDREASYEARIDAAFDQADAHADAGEFEQALEWLSEAEDLAGGLPDGYSELRKQWISYLAPLAVVVRRR*
Ga0070696_1001289091	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	YEARIDAAFDQADAHADAGEFEQALEWLSEAEDLAGGLPDSYGELRKQWISYLAPLAVVVRRR*
Ga0068858_1021525871	3300005842	Switchgrass Rhizosphere	MSEWDEHVAREAGYEVRIEAAFDRAEAHALAGDLEHALEWLSEAEDLSGGLPDEYIELRKRWIASLAPLAVVVRR*
Ga0075417_107249811	3300006049	Populus Rhizosphere	LTLWDERVARDATHEARTEAAFDEAEARALAGDFEQALEWLSQAEDLAGGLPDAYIELRGRWVGSLAPLAVVVRR*
Ga0075432_100615722	3300006058	Populus Rhizosphere	MLPWDARVAREASYEARIDAAFDQADAHADAGRIEQALAWLSEAEDLAGGLPDAYRELRKRWISSLAPLAVVHRRR*
Ga0075428_1012268511	3300006844	Populus Rhizosphere	MLEWDALVAREARHEARIETAFDQAEAHARAGNLEDALGWLSQAEDLGGRLPDAYIELRKRWIASLAPLAVVVRR*
Ga0075430_1017390651	3300006846	Populus Rhizosphere	LSLSDLDVAREARYEARIEAAFDRAEAHALVGELEHALEWLSEAENLSGGLPDPYLDLRARWIASLGPLAVVRRR*
Ga0075431_1009381572	3300006847	Populus Rhizosphere	LTLWDERVAREATHEARTEAAFDEAEARALAGDFEQALEWLSQAEDLAGGLPDAYIELRGRWVGSLAPLAVVVRR*
Ga0075433_107645212	3300006852	Populus Rhizosphere	MLPWDARVAREARYEARIDAAFDQAEAHADAGHIQQALEWLSEAEDLAGGLPDAYSKLRERWISSLAPLAVVPRR*
Ga0075420_1007946931	3300006853	Populus Rhizosphere	MSEWDAHVAREARHEARTEAAFDQADAHAGAGNLEEAIGWVSQAEDLAGGLPDEYIELRKRWIASLPPLAVVVRR*
Ga0075425_1022260312	3300006854	Populus Rhizosphere	EWDAHVAREARHEARTEAAFDQADFHARAGNLEEALGWLSQAEDLAGGLPDEYIELRKRWIASLAPMAVVVRPTA*
Ga0079217_100155742	3300006876	Agricultural Soil	MLEWDALVAREARYEARIEAAFDQADAHARAGNVEDALGWLSEAEDLCGGLPDAYIALRKRWIASLAPLAVVVRP*
Ga0079216_105275411	3300006918	Agricultural Soil	MSLWDAHVAREAHYEARIEAAFDQVDAHAVDGNLERALEWLSEAEDLAGGLPDLYIELRKRWIASLA
Ga0105240_120910842	3300009093	Corn Rhizosphere	MLLWDACVDREASYEARIDAAFDQADAHADAGEFEQALEWLSEAEDLAGGLPDSYGELRKQWISYLAPLAVVVRRR*
Ga0111539_130289592	3300009094	Populus Rhizosphere	MLLWQARVAREARYEARIDAAFDQAEAHADAGHIQQALEWLSEAEDLAGGLPDAYSKLRERWISSLAPLAVVPRR*
Ga0111539_130445772	3300009094	Populus Rhizosphere	MSEWDEHVAREAGYEARIEAAFDRAEAHALGGDLEHALEWLSEGEDLCGGLPDEYIELRKRWIASLAPLAVVVRR*
Ga0075418_105111951	3300009100	Populus Rhizosphere	TVGLFCGRRHLSCQEPSLSLSDLDVAREARYEARIEAAFDRAEAHALVGELEHALEWLSEAENLSGGLPGPYLDLRARWIASLAPLAVVRRR*
Ga0075418_106199143	3300009100	Populus Rhizosphere	MLEWDALVAREARHEARIETAFDQAEAHARAGNLEDALGWLSQAEDLGGRLPDAYIELRKRWIASLAPLAVVVRR
Ga0075418_106855792	3300009100	Populus Rhizosphere	MSEWDAHVAREARHEARTEAAFDQADAHAGAGNLEEAIGWVSQAEDLAGGLPDEYIELRKRWIASLAPLAVVVRR*
Ga0075418_113406191	3300009100	Populus Rhizosphere	THEARTEAAFDEAEARALAGDFEQALEWLSQAEDLAGGLPDAYIELRGRWVGSLAPLAVVVRR*
Ga0114129_105124241	3300009147	Populus Rhizosphere	MSEWDAHVAREARHEARTEAAFDQADAHAGAGNLEEAIGWLSQAEDLAGGLPDEYIDLRKRWMASLAPLAVVVRR*
Ga0111538_112837441	3300009156	Populus Rhizosphere	MLPWDARVAREASYEARIDAAFDQADAHADAGRIEQALAWLSEAEDLAGGLPDAYRQLRKRWISSLAPLAVVHRRR*
Ga0126307_100100162	3300009789	Serpentine Soil	MTPWDARVAREARYELLIETTFDQAEEYARAGEIERALEALSEAEDLAGGLPAAYLDRRRRWISALDPLAVVARR*
Ga0126307_100362743	3300009789	Serpentine Soil	MTLWDERVAREATREARIEAAFDEAEARALAGDFEQALEWLSRAEDLAGGLPDAYIELRERWIGSLAPLAGAGRG*
Ga0126307_101771523	3300009789	Serpentine Soil	MSLWDARVAREARYEALIETAFDRAESYARTGKIERALEALSEAEDLAGGLPAPYIDRRKRWISALDPLAVVARR*
Ga0126313_100650783	3300009840	Serpentine Soil	MMVWDEMVWDERVAREAAHESRIETAFDRADAHAVSGDFALALESLSEAEDLAGGLPDAYVELRARWIHELAPLAVVVRR*
Ga0126313_102440733	3300009840	Serpentine Soil	MSLSDTDVAREAAIEARIEAAFDQAEAHDLAGHLEYALESLSEAEDLAGGLPDEYIELRECWIASLAPLAVVVRR*
Ga0126313_102840462	3300009840	Serpentine Soil	MSLSDADIAREAEHERRIEAAFDQTEAHALAGNLERALESLSEAEDLAAGLPDAYIELRKRWIASLSPLAVVMRR*
Ga0126313_106819982	3300009840	Serpentine Soil	MTLWDERVAREATREARIEAAFDEAEARALAGDFEQALEWLSRAEDLAGGLPDAYIELRERWIGSLAPLTGAGRG*
Ga0126304_100870443	3300010037	Serpentine Soil	MLVWDARVAREASYEARIEAAFDQVEAHALVGDLEYALEFLSEAEDLAGGLPDAYIKLRERWIASLAPLAVVVRR*
Ga0126309_101654872	3300010039	Serpentine Soil	MTVSDARVAREARYEALIEDAFDRAEAFAVAGNFERALESLSEAEDLAGGLPDEYVERRKIWIGDLAPLAVVVRR*
Ga0126309_102020132	3300010039	Serpentine Soil	MLLWDVRVAREAAHEARTDAAFDEAEEQASAGNVESALEALSEAEDLAGGLPHEYIELREHWISLLAPLAVVVRR*
Ga0126309_105154292	3300010039	Serpentine Soil	MLEWDAHVAREASHEARIETAFDQVEAHARAGNLEDALGWLSQAEDLGGGLPDTYIALRKRWIASLAPLAVVVRR*
Ga0126309_112800911	3300010039	Serpentine Soil	MHWDACVADESAYEARIEAAFDRAEAHASDGYLEGALESLSDAEDLCGGLPDSYIRLRKHWISSLSPLAV
Ga0126308_107123611	3300010040	Serpentine Soil	MLLWDARVAREAAHEARTDAAFDEAEEQASAGNVESALEALSEAEDLAGGLPHEYIELREHWISLLAPLAVVVRR*
Ga0126308_108386452	3300010040	Serpentine Soil	MYLSDANVAREARYEARIEAAFDEADDHARSGRLERALEALSEAEDLAGGLPDCYIALRKRWIGGLAPLAVVVRR*
Ga0126308_112530451	3300010040	Serpentine Soil	MLLWDARVAHEAAYEARIEAAFDRADADASAGNPERALESLAIAEDLCGGLPDAYIRLREHWISLLSPHAVLVRR*
Ga0126314_102542551	3300010042	Serpentine Soil	EPSMSLWDARVAREARYEALIETAFDRAESYARTGKIERALEALSEAEDLAGGLPAPYIDRRKRWISALDPLAVVARR*
Ga0126310_100105132	3300010044	Serpentine Soil	MTPWDARVAREGRYELLIETAFDQAEEYARAGEIERALEALSEAEDLAGGLPAAYLDRRRRWISALDPLAVVARR*
Ga0126306_110264482	3300010166	Serpentine Soil	IMSVSDARIAREGRFEALIEDAFDRAEAFAVAGNLERALESLSEAEDLSGGLPDEYVKRRKLWIAALDPLAVVVRR*
Ga0134127_116183882	3300010399	Terrestrial Soil	MLLWDARVDREASYEARIDAAFDQADAHADAGRIEPALAWLSEAEDLAGGLPDGYSELRKQWISYLAPLAVVVRRR*
Ga0134123_100925885	3300010403	Terrestrial Soil	MLLWDARVDREASYEARIDAAFDQADAHADAGEFEQALEWLSEAEDLAGGLPDAYSALRKQWISYLAPLAVVVRRR*
Ga0137374_100502863	3300012204	Vadose Zone Soil	MLLWDAHVAREASYEARIETAFDQAEAHADSGHLEHALESLSEAEDLSGGLPDAYIELRERWIALLAPLAVVVRR*
Ga0157297_104051541	3300012914	Soil	MLLWDARVAREAAHEARTEAAFDEAEEHASAGNLEWALEALSEAEDLAGGLPDEYIALREHWISLLAPLAVVVRR*
Ga0163162_101063641	3300013306	Switchgrass Rhizosphere	MLLWDARVDREASYEARVDAAFDQAEAHADARQFEQALEWLSEAEDLAGGLPDGYSELRKQWISYLAPLAVVVRRR*
Ga0132258_109223932	3300015371	Arabidopsis Rhizosphere	MSEWDAHVAREARYEARIEAAFDQAEAYALVGDLEQALEWLSQAEDLCGGLPDSYIELRKRWIASLAPLAVVVRR*
Ga0132258_130076033	3300015371	Arabidopsis Rhizosphere	MLLWDARVAREARYEARIEAAFDQAEAHADAGHFEHALDWLSEAEDLSGGLPDEYIKLRERWISHLAPLAIVTHR*
Ga0132256_1014991923	3300015372	Arabidopsis Rhizosphere	LWDARVAREARYEARIEAAFDQAEAHADAGHFEQALDWLSEAEDLSGGLPDEYIKLRERWISHLAPLAIVTHR*
Ga0132257_1007247012	3300015373	Arabidopsis Rhizosphere	MLEWDAHVAREVRHEARTEAAFDQADFHARAGNLEEALGWLSQAEDLAGGLPDEYIELRKRWIASLAPMAVVVRPTA*
Ga0190265_119773622	3300018422	Soil	MPISDARIDRERRHEALIEAAFDRADAYAREGNLERALEWLSEAENLGGGLPDAYVEQRRSWISSLAPLAVVVRR
Ga0190270_100544292	3300018469	Soil	MLLWDARVAREAAYETRIEAAFDAAEAHALAGHLEWALESLSEAEMLGGGLPDAYIQERELWISSLTPPAGVVGL
Ga0190270_122469812	3300018469	Soil	MLLWNTRVAREASYQARIEAAFDRAEAKGLAGNFEQALESLSEAEDLSGGLPDVYIEQRERWISCLAPLAVVARR
Ga0184642_10865771	3300019279	Groundwater Sediment	MLLWDAQVAREARYEARIEAAFDQTEAHALAGNLEWALESLSEAENLAGGLPAAFIELRERWIDSLAPLAVVVRR
Ga0207688_102953182	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MLLWDACVDREASYKARIDAAFDQADAHADAGEFEQALEWLSEAEDLAGGLPDGYSELRKQWISYLAPLAVVVRRR
Ga0207645_101330542	3300025907	Miscanthus Rhizosphere	MLLWDARVDREASYEARIDAAFDQADAHADAGEFEQALEWLSEAEDLAGGLPDGYSELRKQWISYLAPLAVVVRRR
Ga0207669_117169411	3300025937	Miscanthus Rhizosphere	MLLWDARVAREARYEARIEAAFDQAEAHADAGHFEQALDWLSEAEDLSGGLPDEYIKLRERWISHLAPLAIVTHR
Ga0207712_103363492	3300025961	Switchgrass Rhizosphere	MLLWDACVDREASYEARIDAAFDQADAHADAGEFEQALEWLSEAEDLAGGLPDGYSELRKQWISYLAPLAVVVRRR
Ga0207668_100976832	3300025972	Switchgrass Rhizosphere	MLLWDARVDREASYEARIDAAFDQADAHADAGEFEQALEWLSEAEDLAGGLPDAYGELRKQWISYLAPLAVVVRRR
Ga0207640_108160322	3300025981	Corn Rhizosphere	MLLWDARVDREASYEARIDAAFDQADAHADAEEFEQALEWLSQAEDLAGGLPDGYSELRKQWISYLAPLAVVVRRR
Ga0207683_118870152	3300026121	Miscanthus Rhizosphere	MLLWDARVAREARYEARIEAAFDQAEAHADAGHFEQALDWLSEAEDLSGGLPDEYIKLRERWISHLAPLASVTHR
Ga0209818_10908201	3300027637	Agricultural Soil	MLEWDALVAREARYEARIEAAFDQADAHARAGNVEDALGWLSEAEDLCGGLPDAYIALRKRWIASLAPLAVVVRP
Ga0207428_104276592	3300027907	Populus Rhizosphere	MLPWDARVAREASYEARIDAAFDQADAHADAGRIEQALAWLSEAEDLAGGLPDAYRELRKRWISSLAPLAVVHRRR
Ga0209382_100857976	3300027909	Populus Rhizosphere	MSEWDAHVAREARHEARTEAAFDQADAHAGAGNLEEAIGWLSQAEDLAGGLPDEYIELRKRWIASLAPLAVVVRR
Ga0209382_117109712	3300027909	Populus Rhizosphere	MLPWDARVAREASYEARIEAAFDQAEARAGAGHFKQALESLSEAEDLSGGLPDAYVQLRERWIGRLAPLAVVARR
Ga0272482_103082762	3300028578	Soil	MSLWDTQVAREARYEVRIESAFDRADEYASAGEFERALESLLEADDLAGGLPDHYVAERERWISLLAPLAVVVRIRPGVAASR
Ga0247820_103928892	3300028597	Soil	MLLWDARVDREASYEARIDAAFDQAEAHADAGEFEQALEWLSEAEDLAGGLPDAYSAVRKQWISYLAPLAVVVRRR
Ga0307276_100401602	3300028705	Soil	MLLWDARVAREAEYEALIEAAFDQAEAHASAGNRERALEFLSEAENLGGGLPDAYVQMREHWITSLSPLAVVVRR
Ga0307318_100072636	3300028744	Soil	MLLWDARVAREASYEARIDAAFDQAEGHADAGHFEQALEWLSEAEDLAGGLPDAYSELRGQWISYLAPLAVVVRRR
Ga0307318_103048372	3300028744	Soil	MLLWDARVAREAAHEARTDAAFDEAEEQASAGNLESALEALSEAEDLAGGLPHEYIELREHWISLLAPLAVVVRR
Ga0307320_102793191	3300028771	Soil	EPSMLLWDARVAREASYEARIDAAFDQAEGHADAGHFEQALEWLSEAEDLAGGLPDAYSELRGQWISYLAPLAVVVRRR
Ga0247825_108975681	3300028812	Soil	MLLWDARVDREASYEARIDTAFDQAEAHADAGEFEQALEWLSEAEDLAGGLPDAYSAVRKQWISYLAPLAVVVRHR
Ga0307408_1002464781	3300031548	Rhizosphere	ISVLGAEAMYLSDANVAREARYEARIEAAFDEADDHARSGRLERALEALSEAEDLAGGLPDCYIALRKRWIGGLAPLAVVVRR
Ga0307408_1004152312	3300031548	Rhizosphere	MLEWDLNVAREARHEARIETAFDQVDAHARAGNLEDALGWLSQAEDLGGGLPDAYIDLRKRWIASLAPLVVVVRR
Ga0307408_1023496402	3300031548	Rhizosphere	SRTMLLWDARVAREAAHEARTEAAFDRAEAQGVAGNFELALESLSEAEDLSGGLPDAYTELRERWISYLAPLAIVVRR
Ga0307405_116467932	3300031731	Rhizosphere	MLLWDARVAREAAHEARTEAAFDRAEAQGLAGNFELALESLSEAEDLSGGLPDAYTELRERWISYLAPLAIVVRR
Ga0307413_110246712	3300031824	Rhizosphere	MLLWDARVAREAAHEARTEAAFDRAEAQGVAGNFELALESLSEAEDLSGGLPDAYTELRERWISYLAPLAIVVRR
Ga0307410_112821522	3300031852	Rhizosphere	MYLSDANVAREARYEARIEAAFDEADDHARSGRLERALEALSEAEDLAGGLPDCYIALRKRWIGGLAPLAVVVRR
Ga0307412_121973542	3300031911	Rhizosphere	AREARYEARIEAAFDEADDHARSGRLERALEALSEAEDLAGGLPDCYIALRKRWIGGLAPLAVVVRR
Ga0307409_1000919681	3300031995	Rhizosphere	WDLNVAREARHEARIETAFDQVDAHARAGNLEDALGWLSQAEDLGGGLPDAYIDLRKRWIASLAPLVVVVRR
Ga0307409_1002256922	3300031995	Rhizosphere	MLLWDARVAREAAHEACTEAAFDEAEEQASAGNLESALEALSEAEDLAGGLPPEYIELREHWISLLAPLAVVVRR
Ga0307416_1000616663	3300032002	Rhizosphere	MLLWDARVAREAAHEARTETAFDEAEAQAGAGNLESALEALSEAEDLAGGLPPEYIELREHWISLLAPLAVVVRR
Ga0307416_1004898363	3300032002	Rhizosphere	MLEWDLNVAREARHEARIETAFDQVDAHARAGNLEDALGWLSQAEDLGGGLPDAYIDLRKRWIASLAPLVV
Ga0307411_118573781	3300032005	Rhizosphere	MLLWDARVAREAAHEARTETAFDEAEAQAGAGNLESALEALSEAEDLAGGLPPEYIELREHWISLLAPLAV
Ga0307415_1008417511	3300032126	Rhizosphere	MFLTDAHIAREARYEARIEMAFDEADDHARAGKLERALEALSEAEDLAGGLPDYYVALRKRWIAALPPLAVVVRR
Ga0247829_100672122	3300033550	Soil	ASYEARVDAAFDQAEAHADAGEFEQALEWLSEAEDLAGGLPDAYSALRKQWISYLAPLAVVVRRR
Ga0247829_116181262	3300033550	Soil	MLLWHARIDREARYEARIEAAFDHAEAQAGAGHFEQALEWLSEAEDLAGGLPEAYTDLREQWISYLAPLALVASRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092893

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences