Basic Information | |
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Family ID | F092828 |
Family Type | Metagenome |
Number of Sequences | 107 |
Average Sequence Length | 45 residues |
Representative Sequence | MTIATTSSTSRRSLLQHIPELALALAGTALVLLALGPIGWRAGW |
Number of Associated Samples | 79 |
Number of Associated Scaffolds | 107 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 97.14 % |
% of genes near scaffold ends (potentially truncated) | 96.26 % |
% of genes from short scaffolds (< 2000 bps) | 91.59 % |
Associated GOLD sequencing projects | 73 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.41 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (52.336 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (62.617 % of family members) |
Environment Ontology (ENVO) | Unclassified (73.832 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (57.009 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 52.78% β-sheet: 0.00% Coil/Unstructured: 47.22% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.41 |
Powered by PDBe Molstar |
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Pfam ID | Name | % Frequency in 107 Family Scaffolds |
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PF13561 | adh_short_C2 | 9.35 |
PF01315 | Ald_Xan_dh_C | 6.54 |
PF00106 | adh_short | 5.61 |
PF02738 | MoCoBD_1 | 4.67 |
PF00118 | Cpn60_TCP1 | 0.93 |
PF07386 | DUF1499 | 0.93 |
PF06314 | ADC | 0.93 |
PF02653 | BPD_transp_2 | 0.93 |
PF00211 | Guanylate_cyc | 0.93 |
PF13358 | DDE_3 | 0.93 |
PF01243 | Putative_PNPOx | 0.93 |
PF07969 | Amidohydro_3 | 0.93 |
COG ID | Name | Functional Category | % Frequency in 107 Family Scaffolds |
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COG0459 | Chaperonin GroEL (HSP60 family) | Posttranslational modification, protein turnover, chaperones [O] | 0.93 |
COG2114 | Adenylate cyclase, class 3 | Signal transduction mechanisms [T] | 0.93 |
COG4446 | Uncharacterized conserved protein, DUF1499 family | Function unknown [S] | 0.93 |
COG4689 | Acetoacetate decarboxylase | Secondary metabolites biosynthesis, transport and catabolism [Q] | 0.93 |
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Name | Rank | Taxonomy | Distribution |
All Organisms | root | All Organisms | 52.34 % |
Unclassified | root | N/A | 47.66 % |
Visualization |
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Scaffold | Taxonomy | Length | IMG/M Link |
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3300001867|JGI12627J18819_10474453 | Not Available | 513 | Open in IMG/M |
3300005332|Ga0066388_105528301 | Not Available | 640 | Open in IMG/M |
3300005468|Ga0070707_101208170 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 722 | Open in IMG/M |
3300005764|Ga0066903_106529948 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 608 | Open in IMG/M |
3300005764|Ga0066903_107863630 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ghvi | 548 | Open in IMG/M |
3300010048|Ga0126373_10775766 | All Organisms → cellular organisms → Bacteria | 1020 | Open in IMG/M |
3300010339|Ga0074046_10382578 | Not Available | 852 | Open in IMG/M |
3300010359|Ga0126376_10043369 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 3139 | Open in IMG/M |
3300010360|Ga0126372_12155284 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 606 | Open in IMG/M |
3300010361|Ga0126378_10351929 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1582 | Open in IMG/M |
3300010361|Ga0126378_11626901 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 733 | Open in IMG/M |
3300010361|Ga0126378_12721571 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 565 | Open in IMG/M |
3300010366|Ga0126379_10839083 | All Organisms → cellular organisms → Bacteria | 1019 | Open in IMG/M |
3300010366|Ga0126379_11528463 | Not Available | 773 | Open in IMG/M |
3300010366|Ga0126379_12194291 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 653 | Open in IMG/M |
3300010376|Ga0126381_102029564 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 829 | Open in IMG/M |
3300010376|Ga0126381_102241807 | All Organisms → cellular organisms → Bacteria | 785 | Open in IMG/M |
3300010398|Ga0126383_12196216 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 638 | Open in IMG/M |
3300016270|Ga0182036_11286123 | Not Available | 610 | Open in IMG/M |
3300016341|Ga0182035_10963975 | Not Available | 755 | Open in IMG/M |
3300016357|Ga0182032_10652245 | Not Available | 880 | Open in IMG/M |
3300016371|Ga0182034_10286305 | All Organisms → cellular organisms → Bacteria | 1315 | Open in IMG/M |
3300016371|Ga0182034_10547920 | Not Available | 970 | Open in IMG/M |
3300016371|Ga0182034_11096755 | Not Available | 690 | Open in IMG/M |
3300016404|Ga0182037_10733988 | All Organisms → cellular organisms → Bacteria | 848 | Open in IMG/M |
3300016422|Ga0182039_12207278 | Not Available | 508 | Open in IMG/M |
3300016445|Ga0182038_12021310 | Not Available | 522 | Open in IMG/M |
3300020579|Ga0210407_10367894 | All Organisms → cellular organisms → Bacteria | 1125 | Open in IMG/M |
3300021178|Ga0210408_11094019 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 613 | Open in IMG/M |
3300021178|Ga0210408_11403822 | Not Available | 526 | Open in IMG/M |
3300021180|Ga0210396_10226385 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1666 | Open in IMG/M |
3300021432|Ga0210384_11202689 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 662 | Open in IMG/M |
3300021560|Ga0126371_11313418 | Not Available | 857 | Open in IMG/M |
3300025928|Ga0207700_11782466 | Not Available | 541 | Open in IMG/M |
3300027576|Ga0209003_1036348 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium fredii group → Sinorhizobium fredii | 851 | Open in IMG/M |
3300027703|Ga0207862_1033614 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1543 | Open in IMG/M |
3300031564|Ga0318573_10686000 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 551 | Open in IMG/M |
3300031572|Ga0318515_10769167 | Not Available | 508 | Open in IMG/M |
3300031573|Ga0310915_10278741 | All Organisms → cellular organisms → Bacteria | 1179 | Open in IMG/M |
3300031668|Ga0318542_10390320 | Not Available | 718 | Open in IMG/M |
3300031668|Ga0318542_10414349 | Not Available | 696 | Open in IMG/M |
3300031679|Ga0318561_10047096 | Not Available | 2145 | Open in IMG/M |
3300031679|Ga0318561_10302185 | Not Available | 875 | Open in IMG/M |
3300031680|Ga0318574_10363482 | Not Available | 844 | Open in IMG/M |
3300031680|Ga0318574_10680054 | Not Available | 603 | Open in IMG/M |
3300031680|Ga0318574_10747766 | Not Available | 573 | Open in IMG/M |
3300031682|Ga0318560_10151511 | Not Available | 1227 | Open in IMG/M |
3300031713|Ga0318496_10402872 | Not Available | 756 | Open in IMG/M |
3300031719|Ga0306917_10274400 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1297 | Open in IMG/M |
3300031719|Ga0306917_10281390 | Not Available | 1281 | Open in IMG/M |
3300031724|Ga0318500_10314362 | Not Available | 769 | Open in IMG/M |
3300031736|Ga0318501_10508351 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 657 | Open in IMG/M |
3300031747|Ga0318502_10979845 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 515 | Open in IMG/M |
3300031748|Ga0318492_10554137 | Not Available | 612 | Open in IMG/M |
3300031763|Ga0318537_10365464 | All Organisms → cellular organisms → Bacteria | 532 | Open in IMG/M |
3300031764|Ga0318535_10129354 | Not Available | 1119 | Open in IMG/M |
3300031768|Ga0318509_10144258 | Not Available | 1310 | Open in IMG/M |
3300031768|Ga0318509_10253415 | Not Available | 983 | Open in IMG/M |
3300031769|Ga0318526_10418676 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 547 | Open in IMG/M |
3300031777|Ga0318543_10575009 | Not Available | 505 | Open in IMG/M |
3300031780|Ga0318508_1041851 | All Organisms → cellular organisms → Bacteria | 1192 | Open in IMG/M |
3300031780|Ga0318508_1191918 | Not Available | 584 | Open in IMG/M |
3300031782|Ga0318552_10270435 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 863 | Open in IMG/M |
3300031782|Ga0318552_10357893 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 743 | Open in IMG/M |
3300031793|Ga0318548_10144582 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1157 | Open in IMG/M |
3300031797|Ga0318550_10164455 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1069 | Open in IMG/M |
3300031805|Ga0318497_10377287 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 793 | Open in IMG/M |
3300031832|Ga0318499_10277606 | Not Available | 649 | Open in IMG/M |
3300031833|Ga0310917_10245809 | All Organisms → cellular organisms → Bacteria | 1203 | Open in IMG/M |
3300031879|Ga0306919_11101220 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 605 | Open in IMG/M |
3300031880|Ga0318544_10298269 | Not Available | 625 | Open in IMG/M |
3300031893|Ga0318536_10198755 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1021 | Open in IMG/M |
3300031893|Ga0318536_10337333 | Not Available | 763 | Open in IMG/M |
3300031896|Ga0318551_10546937 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 666 | Open in IMG/M |
3300031910|Ga0306923_11131128 | All Organisms → cellular organisms → Bacteria | 841 | Open in IMG/M |
3300031912|Ga0306921_11302005 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 804 | Open in IMG/M |
3300031942|Ga0310916_10839089 | Not Available | 772 | Open in IMG/M |
3300031942|Ga0310916_11496408 | Not Available | 550 | Open in IMG/M |
3300031946|Ga0310910_11237629 | Not Available | 578 | Open in IMG/M |
3300031946|Ga0310910_11380540 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 542 | Open in IMG/M |
3300031947|Ga0310909_10089803 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 2451 | Open in IMG/M |
3300031954|Ga0306926_11778287 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 700 | Open in IMG/M |
3300031959|Ga0318530_10086988 | Not Available | 1229 | Open in IMG/M |
3300031959|Ga0318530_10319654 | Not Available | 642 | Open in IMG/M |
3300031981|Ga0318531_10524530 | Not Available | 536 | Open in IMG/M |
3300032001|Ga0306922_10965390 | Not Available | 881 | Open in IMG/M |
3300032042|Ga0318545_10059310 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1305 | Open in IMG/M |
3300032042|Ga0318545_10203733 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 708 | Open in IMG/M |
3300032043|Ga0318556_10047097 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 2073 | Open in IMG/M |
3300032044|Ga0318558_10144932 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1140 | Open in IMG/M |
3300032052|Ga0318506_10322840 | Not Available | 685 | Open in IMG/M |
3300032054|Ga0318570_10116449 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1178 | Open in IMG/M |
3300032054|Ga0318570_10156673 | Not Available | 1020 | Open in IMG/M |
3300032055|Ga0318575_10307815 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 802 | Open in IMG/M |
3300032055|Ga0318575_10633520 | Not Available | 541 | Open in IMG/M |
3300032059|Ga0318533_10669906 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 761 | Open in IMG/M |
3300032065|Ga0318513_10025644 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 2507 | Open in IMG/M |
3300032076|Ga0306924_10156691 | All Organisms → cellular organisms → Bacteria | 2608 | Open in IMG/M |
3300032076|Ga0306924_11127252 | Not Available | 853 | Open in IMG/M |
3300032090|Ga0318518_10068302 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1726 | Open in IMG/M |
3300032091|Ga0318577_10145917 | All Organisms → cellular organisms → Bacteria | 1125 | Open in IMG/M |
3300032091|Ga0318577_10161480 | Not Available | 1068 | Open in IMG/M |
3300033289|Ga0310914_10062210 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae | 3114 | Open in IMG/M |
3300033289|Ga0310914_11031489 | Not Available | 723 | Open in IMG/M |
3300033289|Ga0310914_11449933 | Not Available | 589 | Open in IMG/M |
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Habitat | Taxonomy | Distribution |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 62.62% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 16.82% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 12.15% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 3.74% |
Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 1.87% |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 1.87% |
Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 0.93% |
Visualization |
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Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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3300001867 | Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705) | Environmental | Open in IMG/M |
3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Environmental | Open in IMG/M |
3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
3300010048 | Tropical forest soil microbial communities from Panama - MetaG Plot_11 | Environmental | Open in IMG/M |
3300010339 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3 | Environmental | Open in IMG/M |
3300010359 | Tropical forest soil microbial communities from Panama - MetaG Plot_15 | Environmental | Open in IMG/M |
3300010360 | Tropical forest soil microbial communities from Panama - MetaG Plot_6 | Environmental | Open in IMG/M |
3300010361 | Tropical forest soil microbial communities from Panama - MetaG Plot_23 | Environmental | Open in IMG/M |
3300010366 | Tropical forest soil microbial communities from Panama - MetaG Plot_24 | Environmental | Open in IMG/M |
3300010376 | Tropical forest soil microbial communities from Panama - MetaG Plot_28 | Environmental | Open in IMG/M |
3300010398 | Tropical forest soil microbial communities from Panama - MetaG Plot_35 | Environmental | Open in IMG/M |
3300016270 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 | Environmental | Open in IMG/M |
3300016341 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 | Environmental | Open in IMG/M |
3300016357 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 | Environmental | Open in IMG/M |
3300016371 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 | Environmental | Open in IMG/M |
3300016404 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 | Environmental | Open in IMG/M |
3300016422 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 | Environmental | Open in IMG/M |
3300016445 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 | Environmental | Open in IMG/M |
3300020579 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M | Environmental | Open in IMG/M |
3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
3300021180 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O | Environmental | Open in IMG/M |
3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
3300021479 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M | Environmental | Open in IMG/M |
3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) | Environmental | Open in IMG/M |
3300027576 | Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes) | Environmental | Open in IMG/M |
3300027703 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes) | Environmental | Open in IMG/M |
3300031564 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21 | Environmental | Open in IMG/M |
3300031572 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19 | Environmental | Open in IMG/M |
3300031573 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111 | Environmental | Open in IMG/M |
3300031668 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23 | Environmental | Open in IMG/M |
3300031679 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23 | Environmental | Open in IMG/M |
3300031680 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22 | Environmental | Open in IMG/M |
3300031682 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22 | Environmental | Open in IMG/M |
3300031713 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22 | Environmental | Open in IMG/M |
3300031719 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2) | Environmental | Open in IMG/M |
3300031724 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20 | Environmental | Open in IMG/M |
3300031736 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21 | Environmental | Open in IMG/M |
3300031747 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22 | Environmental | Open in IMG/M |
3300031748 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22 | Environmental | Open in IMG/M |
3300031763 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29 | Environmental | Open in IMG/M |
3300031764 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27 | Environmental | Open in IMG/M |
3300031768 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22 | Environmental | Open in IMG/M |
3300031769 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24 | Environmental | Open in IMG/M |
3300031777 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24 | Environmental | Open in IMG/M |
3300031780 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21 | Environmental | Open in IMG/M |
3300031782 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20 | Environmental | Open in IMG/M |
3300031793 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21 | Environmental | Open in IMG/M |
3300031796 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24 | Environmental | Open in IMG/M |
3300031797 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23 | Environmental | Open in IMG/M |
3300031805 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23 | Environmental | Open in IMG/M |
3300031832 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25 | Environmental | Open in IMG/M |
3300031833 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178 | Environmental | Open in IMG/M |
3300031879 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2) | Environmental | Open in IMG/M |
3300031880 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25 | Environmental | Open in IMG/M |
3300031893 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28 | Environmental | Open in IMG/M |
3300031896 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19 | Environmental | Open in IMG/M |
3300031910 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2) | Environmental | Open in IMG/M |
3300031912 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2) | Environmental | Open in IMG/M |
3300031942 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176 | Environmental | Open in IMG/M |
3300031946 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172 | Environmental | Open in IMG/M |
3300031947 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H | Environmental | Open in IMG/M |
3300031954 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2) | Environmental | Open in IMG/M |
3300031959 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24 | Environmental | Open in IMG/M |
3300031981 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25 | Environmental | Open in IMG/M |
3300032001 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2) | Environmental | Open in IMG/M |
3300032042 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26 | Environmental | Open in IMG/M |
3300032043 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24 | Environmental | Open in IMG/M |
3300032044 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20 | Environmental | Open in IMG/M |
3300032052 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19 | Environmental | Open in IMG/M |
3300032054 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23 | Environmental | Open in IMG/M |
3300032055 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23 | Environmental | Open in IMG/M |
3300032059 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27 | Environmental | Open in IMG/M |
3300032065 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20 | Environmental | Open in IMG/M |
3300032076 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2) | Environmental | Open in IMG/M |
3300032090 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22 | Environmental | Open in IMG/M |
3300032091 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25 | Environmental | Open in IMG/M |
3300033289 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108 | Environmental | Open in IMG/M |
Geographical Distribution | |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12627J18819_104744531 | 3300001867 | Forest Soil | MTIATTSSTTRRSLLQHIPELALAFAGTAIVLLALGPIGWRA |
Ga0066388_1055283011 | 3300005332 | Tropical Forest Soil | MTIATTSSAARRSLLRHIPELALALAGTAVVLLALGPIGWRA |
Ga0070707_1012081701 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | MTALPSSSSVKRSVLRHLPVLALALASIAAVLLALGPIGWRVGW |
Ga0066903_1065299481 | 3300005764 | Tropical Forest Soil | MTITTTSSNAQRTVLRHTPLLALALAMIAVVLLALGPIGWRVGWWHFRFALLTLM |
Ga0066903_1078636301 | 3300005764 | Tropical Forest Soil | MTMATTSSTARRSLLRHVPELALALAGTAVVLLAL |
Ga0126373_107757661 | 3300010048 | Tropical Forest Soil | MTIATTSFTARQSVLKHVPELPLALAGIAMVLLALGPIG |
Ga0074046_103825781 | 3300010339 | Bog Forest Soil | MAIATTSSGVGRNLLRYAPRLALALAAIAVLLLALGPIGWRV |
Ga0126376_100433691 | 3300010359 | Tropical Forest Soil | MTIATTSSTSRRSLLQHIPELALVLAGTALVLLASGPIG |
Ga0126372_121552842 | 3300010360 | Tropical Forest Soil | MAIATSSSSTQRSLLRYGPPFALALAVIAVVLLAVGPIGWRAGWWHFRFAFLNLM |
Ga0126378_103519291 | 3300010361 | Tropical Forest Soil | MTIATTSSGARRSLLRHAPLLALALAAVSVVLLAAGPIGWRAGWWH |
Ga0126378_116269011 | 3300010361 | Tropical Forest Soil | MTIATTSSRTRESLLHHAPVLALSLAGTAAVLLALAPLGWRAGWWQFRFSLLTLMP |
Ga0126378_127215711 | 3300010361 | Tropical Forest Soil | MTIATTSSTARQSVLKHVPELALALAAVAAVLLALGPIGWRLGWWHFR |
Ga0126379_108390831 | 3300010366 | Tropical Forest Soil | MTVATTSFTARQSVLKHVPELALALAGIALVLLALGPIGWRL |
Ga0126379_115284631 | 3300010366 | Tropical Forest Soil | MTIATTSTTSRRSLLQHIPELALALAGTALVLLALGPIGWRAGWWHFRFSLL |
Ga0126379_121942911 | 3300010366 | Tropical Forest Soil | MTIATTSSTVRRSLLQHIPELALALAGTAVVLLALGPIGW |
Ga0126381_1020295641 | 3300010376 | Tropical Forest Soil | MTIATTSSTAQQSVLKHVPELALGLAAVAAVLLALGPIGWRLGWWHFRFS |
Ga0126381_1022418072 | 3300010376 | Tropical Forest Soil | MTVATTSFTARQSVLKHVPELALAFAGIALVLLALG |
Ga0126383_121962161 | 3300010398 | Tropical Forest Soil | MTIATTSFTARQSVLKHVPELALALAGIALVLLALGPIGWRLGWWHFRFSLLTLMP |
Ga0182036_112861231 | 3300016270 | Soil | MTIATTSFTARQSVLKHVPELALALAGIAVVLLALGPIGWRLGWWHF |
Ga0182035_109639751 | 3300016341 | Soil | MTIATTSSTSRRSLLQHIPELALALAGTALVLLALGPIGWRAGWWHFRFSLLTLM |
Ga0182032_106522451 | 3300016357 | Soil | MTIATTSTTSRRSLLQHIPELALALAGMALVLLALGPIGWRAG |
Ga0182034_102863054 | 3300016371 | Soil | MTIATTSTTSRRPLPHHIPELALALAGMALVLLALGPIGWRAGWWHFRFSLLTL |
Ga0182034_105479202 | 3300016371 | Soil | MTIATTSTTSRRSLLQHIPEPALALAGMALVLLALGPIGWRAGWWHFR |
Ga0182034_110967551 | 3300016371 | Soil | MTITTTSSSAQRTVLRHTPLLALALAVIAVVLLALGPIGWHVGWWHFRFA |
Ga0182037_107339881 | 3300016404 | Soil | MTVATTSFTARQSVLKHVPELALALAGIALVLLALGPIGWRLGWWHFRF |
Ga0182039_122072781 | 3300016422 | Soil | MTIATTSTTSRRSLLQHIPELALALAGMALVLLAL |
Ga0182038_120213101 | 3300016445 | Soil | MTIATTSSATRQSVLKHVPELALALAGIAVVLLALGPIGWRLGWW |
Ga0210407_103678942 | 3300020579 | Soil | MTIATTSSTSRRSLLQHIPELALALAGTALVLLALGPIGWRA |
Ga0210408_110940191 | 3300021178 | Soil | MTIATTSSRARQSLVQHAPSLALSLAGTAVVLLALGPLGW |
Ga0210408_114038221 | 3300021178 | Soil | MTIATTSSTSRRSLLQHIPELALALAGTALLLLALGPIGWRAGWWHFRFSLL |
Ga0210396_102263853 | 3300021180 | Soil | VLGGAVMTIATTSSTTRRSLLQRIPELALALAGTAIVLLALDRIG |
Ga0210384_112026892 | 3300021432 | Soil | MTIATTSSSAGRSLLRFMPLLAAVLAAVAVALLAIGP |
Ga0210410_106436721 | 3300021479 | Soil | MTFATTASGAGRSPLRHLPVLAAALAAIAVVLLALGPIGWRAGWW |
Ga0126371_113134182 | 3300021560 | Tropical Forest Soil | MTVATTSSAARRSLRHIPELALALAATAVVLLALAPIGWRAG |
Ga0207700_117824661 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | MTLATTASGAGRSLLRHLPVLAAALAAAAVVLLALGPIGWRAGW |
Ga0209003_10363481 | 3300027576 | Forest Soil | MTIATTSSTSRRSLLQHIPELALALAGTALVLLALAPIGWRAGWWHFRFSL |
Ga0207862_10336141 | 3300027703 | Tropical Forest Soil | MAIATTSSSVRRSLLRYAPLFALVLAVIAVVLLALGPIGWRAGWWHF |
Ga0318573_106860001 | 3300031564 | Soil | GTMTIATTSRKASRSLVQHAPVLAFALAGTAVVLLALAPLG |
Ga0318515_107691671 | 3300031572 | Soil | MTIATTSTTSRRSLLQHIPELALALAGMALVLLALGPIGW |
Ga0310915_102787412 | 3300031573 | Soil | MAIATTSSGASRSVLRHAPLLALALAVIAAALLTVGPIGWRAGWWHFRF |
Ga0318542_103903201 | 3300031668 | Soil | MTIATTSTTSRRSLLQHIPELALALAGMALVLLALGPIGWRAGWW |
Ga0318542_104143491 | 3300031668 | Soil | MTIATTSSTSRRSLLQHIPELALALAGTALVLLALGPIGWRAGWWHFRFSL |
Ga0318561_100470964 | 3300031679 | Soil | MTIATTSTTSRRSLLQHIPELALALAGMALVLLALGPI |
Ga0318561_103021851 | 3300031679 | Soil | MTIATTSSATRQSVLKHVPELALALAGIAVVLLALGPIGWRLGWWHFR |
Ga0318574_103634821 | 3300031680 | Soil | MTIATTSTTSRRSLLQHIPEPALALAGMALVLLALGPIGWRAGWWHFRF |
Ga0318574_106800541 | 3300031680 | Soil | MTIATTSSTSRRSLLQHIPELALALAGTALVLLALGPI |
Ga0318574_107477662 | 3300031680 | Soil | MTIATTSSTVRQSLLQHVPELALALAGTAVVLLALVPIGWRAGWWHFRFSLLTLM |
Ga0318560_101515111 | 3300031682 | Soil | MTIATTSTTSRRSLLQHIPELALALAGMALVLLALGPIGWRAGWWHFRFSLLT |
Ga0318496_104028721 | 3300031713 | Soil | MTIATTSTTSRRPLPHHIPELALALAGMALVLLALGPIGWRAGWWHFRF |
Ga0306917_102744001 | 3300031719 | Soil | MAIASTSSSARRSLLRFAPVCALVLAMIAVVLLALGPIGWRAGWWHFRFA |
Ga0306917_102813902 | 3300031719 | Soil | MTIATTSRKASRSLVQHAPVLAFALAGTAVVLLALAPLGWRAGWWHFRV |
Ga0318500_103143621 | 3300031724 | Soil | MAIASTSSSARRSLLRFAPVCALVLAMIAVVLLALGPIGWRAGWWH |
Ga0318501_105083511 | 3300031736 | Soil | MAIASTSSSARRSLLRFAPVCALVLAMIAVVLLALGPIGWRAGWWHFRFALLR |
Ga0318502_109798451 | 3300031747 | Soil | MTIATTSTTSRRPLPHHIPELALALAGMALVLLALGPIGWRAGWWHFRFSLLTLMPWA |
Ga0318492_105541371 | 3300031748 | Soil | MTIATTSSTTRQSVLKHVPELALALAGIAVVLLALGP |
Ga0318537_103654641 | 3300031763 | Soil | AKLMAIATASSGARRSLLRHAPLLALALAVIAVALLTVGPIGWRAGWWHFRFARP |
Ga0318535_101293541 | 3300031764 | Soil | MAIATSSSSTQRSLLRYGPPFALALAVIAVVLLAVGPIGWR |
Ga0318509_101442582 | 3300031768 | Soil | MTIATTSSTSRRSLLQHIPELALALAGTALVLLALGPIGW |
Ga0318509_102534151 | 3300031768 | Soil | MTIATTSRKASRSLVQHAPVLAFALAGTAVVLLALA |
Ga0318526_104186762 | 3300031769 | Soil | MAIATTSSGARRSVLRYSPLLALALAVIASALLAVGPIGWRAGWWHFRFAFLTL |
Ga0318543_105750092 | 3300031777 | Soil | MTMATTSSTSRRSLLQHIPELALALAGTALVLLALGPIG |
Ga0318508_10418512 | 3300031780 | Soil | MTIATTSTTSRRSLLQHIPELALALAGTALVLLALG |
Ga0318508_11919182 | 3300031780 | Soil | MTIATTSSTSRRSLLQHIPELALALAGTALVLLALG |
Ga0318552_102704351 | 3300031782 | Soil | MTIATTSSRARQSLVQHAPSLALSLAGTAVVLLALGPLGWRAGWWHYR |
Ga0318552_103578931 | 3300031782 | Soil | MTIATTSSTARQSVLKHVPELALALAGIAVVLLALG |
Ga0318548_101445822 | 3300031793 | Soil | MTIATTSSTARQSVLKHVPELALALAGIAMVLLALGPIGWRLGWWHFRF |
Ga0318576_102271671 | 3300031796 | Soil | MATTTTSSSTRRSLARVAPMFALVLATIAVVLLALGPIGWRAGWW |
Ga0318550_101644551 | 3300031797 | Soil | MTIATTSSTARQSVLKHVPELALALAGIAVVLLALGPIG |
Ga0318497_103772871 | 3300031805 | Soil | MAIATSSSSTQRSLLRYGPPFALALAVIAVVLLAVGPIGWRAGWWHFRFAFLNLMP |
Ga0318499_102776061 | 3300031832 | Soil | MTIATTSSTSRRSLLQHIPELALALAGTALVLLALGPIGWRAGWWHFRFSLLT |
Ga0310917_102458092 | 3300031833 | Soil | MTIATTSTTSRRSLLQHIPEPALALAGMALVLLAL |
Ga0306919_111012201 | 3300031879 | Soil | MTIATTSTTSRRSLLQHIPEPALALAGMALVLLALGPIGWRAGWWHFRFSLLTLMP |
Ga0318544_102982692 | 3300031880 | Soil | MTIATTSTTSRRSLLQHIPELALALAGMALVLLALG |
Ga0318536_101987552 | 3300031893 | Soil | MTIATTSRKASRSLVQHAPVLAFALAGTAVVLLALAPLG |
Ga0318536_103373332 | 3300031893 | Soil | MTIATTSTTSRRSLLQHIPELALALAGMALVLLALGPIGWRAGWWH |
Ga0318551_105469371 | 3300031896 | Soil | MTIVTGYSEARRSLVRHAPLLALALAMIAVVLLALGPIGWRAGWWHFRFSLLS |
Ga0306923_111311281 | 3300031910 | Soil | MTIATTSSTSRRSLLQHIPELALALAGTALVLLALGPIGWRAGW |
Ga0306921_113020051 | 3300031912 | Soil | MTIATTSFTARQSVLKHVPELALALAGIAVVLLALGPIGWR |
Ga0310916_108390891 | 3300031942 | Soil | MTIATTSSATRQSVLKHVPELALALAGIAVVLLALGPIGWRLGWWHF |
Ga0310916_114964081 | 3300031942 | Soil | MTIATTSITSRRSLLQHIPELALALAGTALVLLALGPIGWR |
Ga0310910_112376292 | 3300031946 | Soil | MTIATTSFTARQSVLKHVPELALALAGIALVLLALG |
Ga0310910_113805401 | 3300031946 | Soil | MTIVTGYSEARRSLVRHAPLLALALAMIAVALLTLGPIGWRAGWWHYRV |
Ga0310909_100898032 | 3300031947 | Soil | MTIATTSRKASRSLVQHAPVLAFALAGTAVVLLALAPLGWRAGWWHFRVSLLTL |
Ga0306926_117782871 | 3300031954 | Soil | MTIATTSTTSRRSLLQHIPEPALALAGMALVLLALGPIGWRAGWWHFRFSLLTLMPWA |
Ga0318530_100869883 | 3300031959 | Soil | MTIATTSTTSRRSLLQHIPELALALAGMALVLLALGPIGWRA |
Ga0318530_103196541 | 3300031959 | Soil | MTIVTGYSEARRSLVRHAPLLALALAMIAVVLLALGPIGWRAGWWHSASLF |
Ga0318531_105245302 | 3300031981 | Soil | MTIATKSPTARRSLLQHVPELALALAGTAVVLLALAPIGWRAGWWHFRFSL |
Ga0306922_109653903 | 3300032001 | Soil | MTIATTSSATRQSVLKHVAELALALAGIAVVLLALGPIGWRL |
Ga0318545_100593102 | 3300032042 | Soil | MTIATTSSTARQSVLKHVPELALALAGIAVVLLAL |
Ga0318545_102037332 | 3300032042 | Soil | MTIVTGYSEARRSLVRHAPLLALALAMIAVALLALGPIGWRAGWWHFRFSLLSLMP |
Ga0318556_100470971 | 3300032043 | Soil | MTIATTSSTARQSVLKHVPELALALAGIAMVLLALG |
Ga0318558_101449321 | 3300032044 | Soil | MTIATTSSTSRRSLLQHIPELALALAGTALVLLALGP |
Ga0318506_103228401 | 3300032052 | Soil | MTIATTSTTSRRSLLQHIPELALALAGTALVLLALGPIGWRAGWWHFRF |
Ga0318570_101164491 | 3300032054 | Soil | MTIATTSSTARQSVLKHVPELALALAGIAVVLLALGPIGWRLGWW |
Ga0318570_101566732 | 3300032054 | Soil | MAIATTSSGARRSVLRYSPLLALALAVIASALLAVGPIGWRAGWW |
Ga0318575_103078151 | 3300032055 | Soil | MTIATTSSRARQSLVQHAPSLALSLAGTAVVLLALGPLGWRAGWWHYRF |
Ga0318575_106335201 | 3300032055 | Soil | MTIATTSTTSRRPLPHHIPELALALAGMALVLLALGPI |
Ga0318533_106699062 | 3300032059 | Soil | MTIATTSRKASRSLVQHAPVLAFALAGTAVVLLALAPLGWRAGWWHFRVSLLTLLPW |
Ga0318513_100256444 | 3300032065 | Soil | MAIATTSSGARRSVLRYSPLLALALAVIASALLAVGPIGWRAGWWHFRFAFLTLM |
Ga0306924_101566911 | 3300032076 | Soil | MTIATTSTTSRRSLLQHIPEPALALAGMALVLLALGPIG |
Ga0306924_111272522 | 3300032076 | Soil | MTIATTSITSRRSLLQHIPELALALAGTALVLLALGPIGWRAGWWHFR |
Ga0318518_100683021 | 3300032090 | Soil | MTIATTSSTARQSVLKHVPELALALAGIAMVLLALGPIGWRLGWWHFRFSLLTLM |
Ga0318577_101459173 | 3300032091 | Soil | MTIATTSTTSRRPLPHHIPELALALAGMALVLLALGP |
Ga0318577_101614802 | 3300032091 | Soil | MTIATTSTTSRRSLLQHIPELALALAGMALVLLALGPIGWRAGW |
Ga0310914_100622104 | 3300033289 | Soil | MTIATTSSTTRQSVLKHVPELALALAGIAVVLLALGPIGWRL |
Ga0310914_110314891 | 3300033289 | Soil | MTIATTSSTARQSLLQHVPELALALAGTAVVLLALGPIGWRAGWW |
Ga0310914_114499331 | 3300033289 | Soil | MTIATTSITSRRSLLQHIPELALALAGTALVLLALGPIGWRAGWW |
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