NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F092828

Metagenome Family F092828

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F092828
Family Type Metagenome
Number of Sequences 107
Average Sequence Length 45 residues
Representative Sequence MTIATTSSTSRRSLLQHIPELALALAGTALVLLALGPIGWRAGW
Number of Associated Samples 79
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 97.14 %
% of genes near scaffold ends (potentially truncated) 96.26 %
% of genes from short scaffolds (< 2000 bps) 91.59 %
Associated GOLD sequencing projects 73
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (52.336 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(62.617 % of family members)
Environment Ontology (ENVO) Unclassified
(73.832 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(57.009 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 52.78%    β-sheet: 0.00%    Coil/Unstructured: 47.22%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF13561adh_short_C2 9.35
PF01315Ald_Xan_dh_C 6.54
PF00106adh_short 5.61
PF02738MoCoBD_1 4.67
PF00118Cpn60_TCP1 0.93
PF07386DUF1499 0.93
PF06314ADC 0.93
PF02653BPD_transp_2 0.93
PF00211Guanylate_cyc 0.93
PF13358DDE_3 0.93
PF01243Putative_PNPOx 0.93
PF07969Amidohydro_3 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG0459Chaperonin GroEL (HSP60 family)Posttranslational modification, protein turnover, chaperones [O] 0.93
COG2114Adenylate cyclase, class 3Signal transduction mechanisms [T] 0.93
COG4446Uncharacterized conserved protein, DUF1499 familyFunction unknown [S] 0.93
COG4689Acetoacetate decarboxylaseSecondary metabolites biosynthesis, transport and catabolism [Q] 0.93


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms52.34 %
UnclassifiedrootN/A47.66 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001867|JGI12627J18819_10474453Not Available513Open in IMG/M
3300005332|Ga0066388_105528301Not Available640Open in IMG/M
3300005468|Ga0070707_101208170All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium722Open in IMG/M
3300005764|Ga0066903_106529948All Organisms → cellular organisms → Bacteria → Proteobacteria608Open in IMG/M
3300005764|Ga0066903_107863630All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ghvi548Open in IMG/M
3300010048|Ga0126373_10775766All Organisms → cellular organisms → Bacteria1020Open in IMG/M
3300010339|Ga0074046_10382578Not Available852Open in IMG/M
3300010359|Ga0126376_10043369All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3139Open in IMG/M
3300010360|Ga0126372_12155284All Organisms → cellular organisms → Bacteria → Proteobacteria606Open in IMG/M
3300010361|Ga0126378_10351929All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1582Open in IMG/M
3300010361|Ga0126378_11626901All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria733Open in IMG/M
3300010361|Ga0126378_12721571All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria565Open in IMG/M
3300010366|Ga0126379_10839083All Organisms → cellular organisms → Bacteria1019Open in IMG/M
3300010366|Ga0126379_11528463Not Available773Open in IMG/M
3300010366|Ga0126379_12194291All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium653Open in IMG/M
3300010376|Ga0126381_102029564All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium829Open in IMG/M
3300010376|Ga0126381_102241807All Organisms → cellular organisms → Bacteria785Open in IMG/M
3300010398|Ga0126383_12196216All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria638Open in IMG/M
3300016270|Ga0182036_11286123Not Available610Open in IMG/M
3300016341|Ga0182035_10963975Not Available755Open in IMG/M
3300016357|Ga0182032_10652245Not Available880Open in IMG/M
3300016371|Ga0182034_10286305All Organisms → cellular organisms → Bacteria1315Open in IMG/M
3300016371|Ga0182034_10547920Not Available970Open in IMG/M
3300016371|Ga0182034_11096755Not Available690Open in IMG/M
3300016404|Ga0182037_10733988All Organisms → cellular organisms → Bacteria848Open in IMG/M
3300016422|Ga0182039_12207278Not Available508Open in IMG/M
3300016445|Ga0182038_12021310Not Available522Open in IMG/M
3300020579|Ga0210407_10367894All Organisms → cellular organisms → Bacteria1125Open in IMG/M
3300021178|Ga0210408_11094019All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria613Open in IMG/M
3300021178|Ga0210408_11403822Not Available526Open in IMG/M
3300021180|Ga0210396_10226385All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1666Open in IMG/M
3300021432|Ga0210384_11202689All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria662Open in IMG/M
3300021560|Ga0126371_11313418Not Available857Open in IMG/M
3300025928|Ga0207700_11782466Not Available541Open in IMG/M
3300027576|Ga0209003_1036348All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium fredii group → Sinorhizobium fredii851Open in IMG/M
3300027703|Ga0207862_1033614All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1543Open in IMG/M
3300031564|Ga0318573_10686000All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria551Open in IMG/M
3300031572|Ga0318515_10769167Not Available508Open in IMG/M
3300031573|Ga0310915_10278741All Organisms → cellular organisms → Bacteria1179Open in IMG/M
3300031668|Ga0318542_10390320Not Available718Open in IMG/M
3300031668|Ga0318542_10414349Not Available696Open in IMG/M
3300031679|Ga0318561_10047096Not Available2145Open in IMG/M
3300031679|Ga0318561_10302185Not Available875Open in IMG/M
3300031680|Ga0318574_10363482Not Available844Open in IMG/M
3300031680|Ga0318574_10680054Not Available603Open in IMG/M
3300031680|Ga0318574_10747766Not Available573Open in IMG/M
3300031682|Ga0318560_10151511Not Available1227Open in IMG/M
3300031713|Ga0318496_10402872Not Available756Open in IMG/M
3300031719|Ga0306917_10274400All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1297Open in IMG/M
3300031719|Ga0306917_10281390Not Available1281Open in IMG/M
3300031724|Ga0318500_10314362Not Available769Open in IMG/M
3300031736|Ga0318501_10508351All Organisms → cellular organisms → Bacteria → Proteobacteria657Open in IMG/M
3300031747|Ga0318502_10979845All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria515Open in IMG/M
3300031748|Ga0318492_10554137Not Available612Open in IMG/M
3300031763|Ga0318537_10365464All Organisms → cellular organisms → Bacteria532Open in IMG/M
3300031764|Ga0318535_10129354Not Available1119Open in IMG/M
3300031768|Ga0318509_10144258Not Available1310Open in IMG/M
3300031768|Ga0318509_10253415Not Available983Open in IMG/M
3300031769|Ga0318526_10418676All Organisms → cellular organisms → Bacteria → Proteobacteria547Open in IMG/M
3300031777|Ga0318543_10575009Not Available505Open in IMG/M
3300031780|Ga0318508_1041851All Organisms → cellular organisms → Bacteria1192Open in IMG/M
3300031780|Ga0318508_1191918Not Available584Open in IMG/M
3300031782|Ga0318552_10270435All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria863Open in IMG/M
3300031782|Ga0318552_10357893All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria743Open in IMG/M
3300031793|Ga0318548_10144582All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1157Open in IMG/M
3300031797|Ga0318550_10164455All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1069Open in IMG/M
3300031805|Ga0318497_10377287All Organisms → cellular organisms → Bacteria → Proteobacteria793Open in IMG/M
3300031832|Ga0318499_10277606Not Available649Open in IMG/M
3300031833|Ga0310917_10245809All Organisms → cellular organisms → Bacteria1203Open in IMG/M
3300031879|Ga0306919_11101220All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria605Open in IMG/M
3300031880|Ga0318544_10298269Not Available625Open in IMG/M
3300031893|Ga0318536_10198755All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1021Open in IMG/M
3300031893|Ga0318536_10337333Not Available763Open in IMG/M
3300031896|Ga0318551_10546937All Organisms → cellular organisms → Bacteria → Proteobacteria666Open in IMG/M
3300031910|Ga0306923_11131128All Organisms → cellular organisms → Bacteria841Open in IMG/M
3300031912|Ga0306921_11302005All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium804Open in IMG/M
3300031942|Ga0310916_10839089Not Available772Open in IMG/M
3300031942|Ga0310916_11496408Not Available550Open in IMG/M
3300031946|Ga0310910_11237629Not Available578Open in IMG/M
3300031946|Ga0310910_11380540All Organisms → cellular organisms → Bacteria → Proteobacteria542Open in IMG/M
3300031947|Ga0310909_10089803All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2451Open in IMG/M
3300031954|Ga0306926_11778287All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria700Open in IMG/M
3300031959|Ga0318530_10086988Not Available1229Open in IMG/M
3300031959|Ga0318530_10319654Not Available642Open in IMG/M
3300031981|Ga0318531_10524530Not Available536Open in IMG/M
3300032001|Ga0306922_10965390Not Available881Open in IMG/M
3300032042|Ga0318545_10059310All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1305Open in IMG/M
3300032042|Ga0318545_10203733All Organisms → cellular organisms → Bacteria → Proteobacteria708Open in IMG/M
3300032043|Ga0318556_10047097All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2073Open in IMG/M
3300032044|Ga0318558_10144932All Organisms → cellular organisms → Bacteria → Proteobacteria1140Open in IMG/M
3300032052|Ga0318506_10322840Not Available685Open in IMG/M
3300032054|Ga0318570_10116449All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1178Open in IMG/M
3300032054|Ga0318570_10156673Not Available1020Open in IMG/M
3300032055|Ga0318575_10307815All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria802Open in IMG/M
3300032055|Ga0318575_10633520Not Available541Open in IMG/M
3300032059|Ga0318533_10669906All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria761Open in IMG/M
3300032065|Ga0318513_10025644All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2507Open in IMG/M
3300032076|Ga0306924_10156691All Organisms → cellular organisms → Bacteria2608Open in IMG/M
3300032076|Ga0306924_11127252Not Available853Open in IMG/M
3300032090|Ga0318518_10068302All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1726Open in IMG/M
3300032091|Ga0318577_10145917All Organisms → cellular organisms → Bacteria1125Open in IMG/M
3300032091|Ga0318577_10161480Not Available1068Open in IMG/M
3300033289|Ga0310914_10062210All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae3114Open in IMG/M
3300033289|Ga0310914_11031489Not Available723Open in IMG/M
3300033289|Ga0310914_11449933Not Available589Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil62.62%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil16.82%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil12.15%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil3.74%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.87%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.87%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.93%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001867Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010339Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027576Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027703Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031682Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22EnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031747Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22EnvironmentalOpen in IMG/M
3300031748Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22EnvironmentalOpen in IMG/M
3300031763Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29EnvironmentalOpen in IMG/M
3300031764Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031769Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24EnvironmentalOpen in IMG/M
3300031777Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24EnvironmentalOpen in IMG/M
3300031780Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21EnvironmentalOpen in IMG/M
3300031782Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20EnvironmentalOpen in IMG/M
3300031793Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031797Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23EnvironmentalOpen in IMG/M
3300031805Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23EnvironmentalOpen in IMG/M
3300031832Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031880Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25EnvironmentalOpen in IMG/M
3300031893Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031959Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24EnvironmentalOpen in IMG/M
3300031981Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032042Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26EnvironmentalOpen in IMG/M
3300032043Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24EnvironmentalOpen in IMG/M
3300032044Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20EnvironmentalOpen in IMG/M
3300032052Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19EnvironmentalOpen in IMG/M
3300032054Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23EnvironmentalOpen in IMG/M
3300032055Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032065Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032090Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12627J18819_1047445313300001867Forest SoilMTIATTSSTTRRSLLQHIPELALAFAGTAIVLLALGPIGWRA
Ga0066388_10552830113300005332Tropical Forest SoilMTIATTSSAARRSLLRHIPELALALAGTAVVLLALGPIGWRA
Ga0070707_10120817013300005468Corn, Switchgrass And Miscanthus RhizosphereMTALPSSSSVKRSVLRHLPVLALALASIAAVLLALGPIGWRVGW
Ga0066903_10652994813300005764Tropical Forest SoilMTITTTSSNAQRTVLRHTPLLALALAMIAVVLLALGPIGWRVGWWHFRFALLTLM
Ga0066903_10786363013300005764Tropical Forest SoilMTMATTSSTARRSLLRHVPELALALAGTAVVLLAL
Ga0126373_1077576613300010048Tropical Forest SoilMTIATTSFTARQSVLKHVPELPLALAGIAMVLLALGPIG
Ga0074046_1038257813300010339Bog Forest SoilMAIATTSSGVGRNLLRYAPRLALALAAIAVLLLALGPIGWRV
Ga0126376_1004336913300010359Tropical Forest SoilMTIATTSSTSRRSLLQHIPELALVLAGTALVLLASGPIG
Ga0126372_1215528423300010360Tropical Forest SoilMAIATSSSSTQRSLLRYGPPFALALAVIAVVLLAVGPIGWRAGWWHFRFAFLNLM
Ga0126378_1035192913300010361Tropical Forest SoilMTIATTSSGARRSLLRHAPLLALALAAVSVVLLAAGPIGWRAGWWH
Ga0126378_1162690113300010361Tropical Forest SoilMTIATTSSRTRESLLHHAPVLALSLAGTAAVLLALAPLGWRAGWWQFRFSLLTLMP
Ga0126378_1272157113300010361Tropical Forest SoilMTIATTSSTARQSVLKHVPELALALAAVAAVLLALGPIGWRLGWWHFR
Ga0126379_1083908313300010366Tropical Forest SoilMTVATTSFTARQSVLKHVPELALALAGIALVLLALGPIGWRL
Ga0126379_1152846313300010366Tropical Forest SoilMTIATTSTTSRRSLLQHIPELALALAGTALVLLALGPIGWRAGWWHFRFSLL
Ga0126379_1219429113300010366Tropical Forest SoilMTIATTSSTVRRSLLQHIPELALALAGTAVVLLALGPIGW
Ga0126381_10202956413300010376Tropical Forest SoilMTIATTSSTAQQSVLKHVPELALGLAAVAAVLLALGPIGWRLGWWHFRFS
Ga0126381_10224180723300010376Tropical Forest SoilMTVATTSFTARQSVLKHVPELALAFAGIALVLLALG
Ga0126383_1219621613300010398Tropical Forest SoilMTIATTSFTARQSVLKHVPELALALAGIALVLLALGPIGWRLGWWHFRFSLLTLMP
Ga0182036_1128612313300016270SoilMTIATTSFTARQSVLKHVPELALALAGIAVVLLALGPIGWRLGWWHF
Ga0182035_1096397513300016341SoilMTIATTSSTSRRSLLQHIPELALALAGTALVLLALGPIGWRAGWWHFRFSLLTLM
Ga0182032_1065224513300016357SoilMTIATTSTTSRRSLLQHIPELALALAGMALVLLALGPIGWRAG
Ga0182034_1028630543300016371SoilMTIATTSTTSRRPLPHHIPELALALAGMALVLLALGPIGWRAGWWHFRFSLLTL
Ga0182034_1054792023300016371SoilMTIATTSTTSRRSLLQHIPEPALALAGMALVLLALGPIGWRAGWWHFR
Ga0182034_1109675513300016371SoilMTITTTSSSAQRTVLRHTPLLALALAVIAVVLLALGPIGWHVGWWHFRFA
Ga0182037_1073398813300016404SoilMTVATTSFTARQSVLKHVPELALALAGIALVLLALGPIGWRLGWWHFRF
Ga0182039_1220727813300016422SoilMTIATTSTTSRRSLLQHIPELALALAGMALVLLAL
Ga0182038_1202131013300016445SoilMTIATTSSATRQSVLKHVPELALALAGIAVVLLALGPIGWRLGWW
Ga0210407_1036789423300020579SoilMTIATTSSTSRRSLLQHIPELALALAGTALVLLALGPIGWRA
Ga0210408_1109401913300021178SoilMTIATTSSRARQSLVQHAPSLALSLAGTAVVLLALGPLGW
Ga0210408_1140382213300021178SoilMTIATTSSTSRRSLLQHIPELALALAGTALLLLALGPIGWRAGWWHFRFSLL
Ga0210396_1022638533300021180SoilVLGGAVMTIATTSSTTRRSLLQRIPELALALAGTAIVLLALDRIG
Ga0210384_1120268923300021432SoilMTIATTSSSAGRSLLRFMPLLAAVLAAVAVALLAIGP
Ga0210410_1064367213300021479SoilMTFATTASGAGRSPLRHLPVLAAALAAIAVVLLALGPIGWRAGWW
Ga0126371_1131341823300021560Tropical Forest SoilMTVATTSSAARRSLRHIPELALALAATAVVLLALAPIGWRAG
Ga0207700_1178246613300025928Corn, Switchgrass And Miscanthus RhizosphereMTLATTASGAGRSLLRHLPVLAAALAAAAVVLLALGPIGWRAGW
Ga0209003_103634813300027576Forest SoilMTIATTSSTSRRSLLQHIPELALALAGTALVLLALAPIGWRAGWWHFRFSL
Ga0207862_103361413300027703Tropical Forest SoilMAIATTSSSVRRSLLRYAPLFALVLAVIAVVLLALGPIGWRAGWWHF
Ga0318573_1068600013300031564SoilGTMTIATTSRKASRSLVQHAPVLAFALAGTAVVLLALAPLG
Ga0318515_1076916713300031572SoilMTIATTSTTSRRSLLQHIPELALALAGMALVLLALGPIGW
Ga0310915_1027874123300031573SoilMAIATTSSGASRSVLRHAPLLALALAVIAAALLTVGPIGWRAGWWHFRF
Ga0318542_1039032013300031668SoilMTIATTSTTSRRSLLQHIPELALALAGMALVLLALGPIGWRAGWW
Ga0318542_1041434913300031668SoilMTIATTSSTSRRSLLQHIPELALALAGTALVLLALGPIGWRAGWWHFRFSL
Ga0318561_1004709643300031679SoilMTIATTSTTSRRSLLQHIPELALALAGMALVLLALGPI
Ga0318561_1030218513300031679SoilMTIATTSSATRQSVLKHVPELALALAGIAVVLLALGPIGWRLGWWHFR
Ga0318574_1036348213300031680SoilMTIATTSTTSRRSLLQHIPEPALALAGMALVLLALGPIGWRAGWWHFRF
Ga0318574_1068005413300031680SoilMTIATTSSTSRRSLLQHIPELALALAGTALVLLALGPI
Ga0318574_1074776623300031680SoilMTIATTSSTVRQSLLQHVPELALALAGTAVVLLALVPIGWRAGWWHFRFSLLTLM
Ga0318560_1015151113300031682SoilMTIATTSTTSRRSLLQHIPELALALAGMALVLLALGPIGWRAGWWHFRFSLLT
Ga0318496_1040287213300031713SoilMTIATTSTTSRRPLPHHIPELALALAGMALVLLALGPIGWRAGWWHFRF
Ga0306917_1027440013300031719SoilMAIASTSSSARRSLLRFAPVCALVLAMIAVVLLALGPIGWRAGWWHFRFA
Ga0306917_1028139023300031719SoilMTIATTSRKASRSLVQHAPVLAFALAGTAVVLLALAPLGWRAGWWHFRV
Ga0318500_1031436213300031724SoilMAIASTSSSARRSLLRFAPVCALVLAMIAVVLLALGPIGWRAGWWH
Ga0318501_1050835113300031736SoilMAIASTSSSARRSLLRFAPVCALVLAMIAVVLLALGPIGWRAGWWHFRFALLR
Ga0318502_1097984513300031747SoilMTIATTSTTSRRPLPHHIPELALALAGMALVLLALGPIGWRAGWWHFRFSLLTLMPWA
Ga0318492_1055413713300031748SoilMTIATTSSTTRQSVLKHVPELALALAGIAVVLLALGP
Ga0318537_1036546413300031763SoilAKLMAIATASSGARRSLLRHAPLLALALAVIAVALLTVGPIGWRAGWWHFRFARP
Ga0318535_1012935413300031764SoilMAIATSSSSTQRSLLRYGPPFALALAVIAVVLLAVGPIGWR
Ga0318509_1014425823300031768SoilMTIATTSSTSRRSLLQHIPELALALAGTALVLLALGPIGW
Ga0318509_1025341513300031768SoilMTIATTSRKASRSLVQHAPVLAFALAGTAVVLLALA
Ga0318526_1041867623300031769SoilMAIATTSSGARRSVLRYSPLLALALAVIASALLAVGPIGWRAGWWHFRFAFLTL
Ga0318543_1057500923300031777SoilMTMATTSSTSRRSLLQHIPELALALAGTALVLLALGPIG
Ga0318508_104185123300031780SoilMTIATTSTTSRRSLLQHIPELALALAGTALVLLALG
Ga0318508_119191823300031780SoilMTIATTSSTSRRSLLQHIPELALALAGTALVLLALG
Ga0318552_1027043513300031782SoilMTIATTSSRARQSLVQHAPSLALSLAGTAVVLLALGPLGWRAGWWHYR
Ga0318552_1035789313300031782SoilMTIATTSSTARQSVLKHVPELALALAGIAVVLLALG
Ga0318548_1014458223300031793SoilMTIATTSSTARQSVLKHVPELALALAGIAMVLLALGPIGWRLGWWHFRF
Ga0318576_1022716713300031796SoilMATTTTSSSTRRSLARVAPMFALVLATIAVVLLALGPIGWRAGWW
Ga0318550_1016445513300031797SoilMTIATTSSTARQSVLKHVPELALALAGIAVVLLALGPIG
Ga0318497_1037728713300031805SoilMAIATSSSSTQRSLLRYGPPFALALAVIAVVLLAVGPIGWRAGWWHFRFAFLNLMP
Ga0318499_1027760613300031832SoilMTIATTSSTSRRSLLQHIPELALALAGTALVLLALGPIGWRAGWWHFRFSLLT
Ga0310917_1024580923300031833SoilMTIATTSTTSRRSLLQHIPEPALALAGMALVLLAL
Ga0306919_1110122013300031879SoilMTIATTSTTSRRSLLQHIPEPALALAGMALVLLALGPIGWRAGWWHFRFSLLTLMP
Ga0318544_1029826923300031880SoilMTIATTSTTSRRSLLQHIPELALALAGMALVLLALG
Ga0318536_1019875523300031893SoilMTIATTSRKASRSLVQHAPVLAFALAGTAVVLLALAPLG
Ga0318536_1033733323300031893SoilMTIATTSTTSRRSLLQHIPELALALAGMALVLLALGPIGWRAGWWH
Ga0318551_1054693713300031896SoilMTIVTGYSEARRSLVRHAPLLALALAMIAVVLLALGPIGWRAGWWHFRFSLLS
Ga0306923_1113112813300031910SoilMTIATTSSTSRRSLLQHIPELALALAGTALVLLALGPIGWRAGW
Ga0306921_1130200513300031912SoilMTIATTSFTARQSVLKHVPELALALAGIAVVLLALGPIGWR
Ga0310916_1083908913300031942SoilMTIATTSSATRQSVLKHVPELALALAGIAVVLLALGPIGWRLGWWHF
Ga0310916_1149640813300031942SoilMTIATTSITSRRSLLQHIPELALALAGTALVLLALGPIGWR
Ga0310910_1123762923300031946SoilMTIATTSFTARQSVLKHVPELALALAGIALVLLALG
Ga0310910_1138054013300031946SoilMTIVTGYSEARRSLVRHAPLLALALAMIAVALLTLGPIGWRAGWWHYRV
Ga0310909_1008980323300031947SoilMTIATTSRKASRSLVQHAPVLAFALAGTAVVLLALAPLGWRAGWWHFRVSLLTL
Ga0306926_1177828713300031954SoilMTIATTSTTSRRSLLQHIPEPALALAGMALVLLALGPIGWRAGWWHFRFSLLTLMPWA
Ga0318530_1008698833300031959SoilMTIATTSTTSRRSLLQHIPELALALAGMALVLLALGPIGWRA
Ga0318530_1031965413300031959SoilMTIVTGYSEARRSLVRHAPLLALALAMIAVVLLALGPIGWRAGWWHSASLF
Ga0318531_1052453023300031981SoilMTIATKSPTARRSLLQHVPELALALAGTAVVLLALAPIGWRAGWWHFRFSL
Ga0306922_1096539033300032001SoilMTIATTSSATRQSVLKHVAELALALAGIAVVLLALGPIGWRL
Ga0318545_1005931023300032042SoilMTIATTSSTARQSVLKHVPELALALAGIAVVLLAL
Ga0318545_1020373323300032042SoilMTIVTGYSEARRSLVRHAPLLALALAMIAVALLALGPIGWRAGWWHFRFSLLSLMP
Ga0318556_1004709713300032043SoilMTIATTSSTARQSVLKHVPELALALAGIAMVLLALG
Ga0318558_1014493213300032044SoilMTIATTSSTSRRSLLQHIPELALALAGTALVLLALGP
Ga0318506_1032284013300032052SoilMTIATTSTTSRRSLLQHIPELALALAGTALVLLALGPIGWRAGWWHFRF
Ga0318570_1011644913300032054SoilMTIATTSSTARQSVLKHVPELALALAGIAVVLLALGPIGWRLGWW
Ga0318570_1015667323300032054SoilMAIATTSSGARRSVLRYSPLLALALAVIASALLAVGPIGWRAGWW
Ga0318575_1030781513300032055SoilMTIATTSSRARQSLVQHAPSLALSLAGTAVVLLALGPLGWRAGWWHYRF
Ga0318575_1063352013300032055SoilMTIATTSTTSRRPLPHHIPELALALAGMALVLLALGPI
Ga0318533_1066990623300032059SoilMTIATTSRKASRSLVQHAPVLAFALAGTAVVLLALAPLGWRAGWWHFRVSLLTLLPW
Ga0318513_1002564443300032065SoilMAIATTSSGARRSVLRYSPLLALALAVIASALLAVGPIGWRAGWWHFRFAFLTLM
Ga0306924_1015669113300032076SoilMTIATTSTTSRRSLLQHIPEPALALAGMALVLLALGPIG
Ga0306924_1112725223300032076SoilMTIATTSITSRRSLLQHIPELALALAGTALVLLALGPIGWRAGWWHFR
Ga0318518_1006830213300032090SoilMTIATTSSTARQSVLKHVPELALALAGIAMVLLALGPIGWRLGWWHFRFSLLTLM
Ga0318577_1014591733300032091SoilMTIATTSTTSRRPLPHHIPELALALAGMALVLLALGP
Ga0318577_1016148023300032091SoilMTIATTSTTSRRSLLQHIPELALALAGMALVLLALGPIGWRAGW
Ga0310914_1006221043300033289SoilMTIATTSSTTRQSVLKHVPELALALAGIAVVLLALGPIGWRL
Ga0310914_1103148913300033289SoilMTIATTSSTARQSLLQHVPELALALAGTAVVLLALGPIGWRAGWW
Ga0310914_1144993313300033289SoilMTIATTSITSRRSLLQHIPELALALAGTALVLLALGPIGWRAGWW


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