Metagenome Family F092801

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092801
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	80 residues
Representative Sequence	MDPAAQRIRDKLWYGILPNVRPLKTRGGHGTGHKLCDGCDVTIWPKEAEQEVELEGGRTLRFHVACASLWQVLRSALPR
Number of Associated Samples	71
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	66.36 %
% of genes near scaffold ends (potentially truncated)	30.84 %
% of genes from short scaffolds (< 2000 bps)	70.09 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.617 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (33.645 % of family members)
Environment Ontology (ENVO)	Unclassified (34.579 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (68.224 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.85% β-sheet: 17.72% Coil/Unstructured: 54.43%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF04392	ABC_sub_bind	11.21
PF07589	PEP-CTERM	2.80
PF01068	DNA_ligase_A_M	2.80
PF07729	FCD	1.87
PF00528	BPD_transp_1	1.87
PF02518	HATPase_c	1.87
PF11706	zf-CGNR	1.87
PF05494	MlaC	1.87
PF06472	ABC_membrane_2	0.93
PF04185	Phosphoesterase	0.93
PF12911	OppC_N	0.93
PF00210	Ferritin	0.93
PF08402	TOBE_2	0.93
PF00239	Resolvase	0.93
PF03354	TerL_ATPase	0.93
PF08867	FRG	0.93
PF08239	SH3_3	0.93
PF07578	LAB_N	0.93
PF07452	CHRD	0.93
PF00072	Response_reg	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	11.21
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	2.80
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	2.80
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	1.87
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	1.87
COG2854	Periplasmic subunit MlaC of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	1.87
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.93
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.93
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.93
COG3952	Uncharacterized N-terminal domain of lipid-A-disaccharide synthase	General function prediction only [R]	0.93
COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.55 %
Unclassified	root	N/A	36.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.55 %
Unclassified	root	N/A	36.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.62 %
Unclassified	root	N/A	36.45 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	30.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.74 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	30.84 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.87 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.93 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	30.84 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	29.91 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	0.93 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	29.91 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	29.91 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	29.91 %
unclassified Symbiodinium	no rank	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	29.91 %
Symbiodinium sp. KB8	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. KB8	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000443\|F12B_10954579	Not Available	649	Open in IMG/M
3300001431\|F14TB_100784887	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300002910\|JGI25615J43890_1034961	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300005332\|Ga0066388_103986664	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300005332\|Ga0066388_105553081	Not Available	639	Open in IMG/M
3300005406\|Ga0070703_10024398	Not Available	1787	Open in IMG/M
3300005406\|Ga0070703_10584034	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	514	Open in IMG/M
3300005440\|Ga0070705_100899668	Not Available	712	Open in IMG/M
3300005444\|Ga0070694_100607972	Not Available	881	Open in IMG/M
3300005445\|Ga0070708_100008166	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	8396	Open in IMG/M
3300005445\|Ga0070708_100029003	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4768	Open in IMG/M
3300005445\|Ga0070708_100036999	All Organisms → cellular organisms → Bacteria	4256	Open in IMG/M
3300005445\|Ga0070708_100051267	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3656	Open in IMG/M
3300005445\|Ga0070708_100188862	Not Available	1927	Open in IMG/M
3300005445\|Ga0070708_100633832	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1007	Open in IMG/M
3300005445\|Ga0070708_100634878	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
3300005467\|Ga0070706_100079041	All Organisms → cellular organisms → Bacteria	3044	Open in IMG/M
3300005467\|Ga0070706_100215098	Not Available	1794	Open in IMG/M
3300005467\|Ga0070706_100756056	Not Available	900	Open in IMG/M
3300005468\|Ga0070707_100463994	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1227	Open in IMG/M
3300005471\|Ga0070698_100603835	Not Available	1038	Open in IMG/M
3300005471\|Ga0070698_100772131	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	904	Open in IMG/M
3300005471\|Ga0070698_100795670	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	889	Open in IMG/M
3300005518\|Ga0070699_100124800	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2266	Open in IMG/M
3300005536\|Ga0070697_100300638	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1379	Open in IMG/M
3300005546\|Ga0070696_100940396	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	719	Open in IMG/M
3300006163\|Ga0070715_10157973	Not Available	1118	Open in IMG/M
3300006173\|Ga0070716_101022942	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	654	Open in IMG/M
3300006806\|Ga0079220_10099998	Not Available	1501	Open in IMG/M
3300006854\|Ga0075425_100101033	All Organisms → cellular organisms → Bacteria	3279	Open in IMG/M
3300006914\|Ga0075436_100086981	All Organisms → cellular organisms → Bacteria	2171	Open in IMG/M
3300007255\|Ga0099791_10006510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4810	Open in IMG/M
3300007255\|Ga0099791_10566625	Not Available	554	Open in IMG/M
3300007258\|Ga0099793_10120183	Not Available	1228	Open in IMG/M
3300007265\|Ga0099794_10006377	All Organisms → cellular organisms → Bacteria	4773	Open in IMG/M
3300007788\|Ga0099795_10505503	Not Available	564	Open in IMG/M
3300009038\|Ga0099829_10128192	Not Available	2005	Open in IMG/M
3300009088\|Ga0099830_10597158	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	905	Open in IMG/M
3300009089\|Ga0099828_10086937	All Organisms → cellular organisms → Bacteria → Proteobacteria	2680	Open in IMG/M
3300009089\|Ga0099828_10867627	Not Available	807	Open in IMG/M
3300009090\|Ga0099827_10566028	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	979	Open in IMG/M
3300009143\|Ga0099792_10056901	All Organisms → cellular organisms → Bacteria	1926	Open in IMG/M
3300010358\|Ga0126370_11381243	Not Available	664	Open in IMG/M
3300010359\|Ga0126376_11016507	Not Available	830	Open in IMG/M
3300010400\|Ga0134122_11649763	Not Available	667	Open in IMG/M
3300011270\|Ga0137391_10207364	Not Available	1704	Open in IMG/M
3300012096\|Ga0137389_10699167	Not Available	871	Open in IMG/M
3300012096\|Ga0137389_10911418	Not Available	754	Open in IMG/M
3300012189\|Ga0137388_11601690	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	587	Open in IMG/M
3300012202\|Ga0137363_10891855	Not Available	755	Open in IMG/M
3300012202\|Ga0137363_11607495	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300012203\|Ga0137399_10382336	All Organisms → cellular organisms → Bacteria	1172	Open in IMG/M
3300012205\|Ga0137362_10091947	All Organisms → cellular organisms → Bacteria	2544	Open in IMG/M
3300012207\|Ga0137381_10629702	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	934	Open in IMG/M
3300012361\|Ga0137360_10063232	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2712	Open in IMG/M
3300012361\|Ga0137360_10135342	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1934	Open in IMG/M
3300012362\|Ga0137361_10199034	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1811	Open in IMG/M
3300012362\|Ga0137361_10887733	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300012363\|Ga0137390_10126794	All Organisms → cellular organisms → Bacteria	2530	Open in IMG/M
3300012363\|Ga0137390_10459807	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1248	Open in IMG/M
3300012363\|Ga0137390_10531458	All Organisms → cellular organisms → Bacteria	1148	Open in IMG/M
3300012917\|Ga0137395_10001867	All Organisms → cellular organisms → Bacteria → Proteobacteria	9974	Open in IMG/M
3300012917\|Ga0137395_10481682	Not Available	893	Open in IMG/M
3300012925\|Ga0137419_10683942	Not Available	831	Open in IMG/M
3300012957\|Ga0164303_10207471	Not Available	1090	Open in IMG/M
3300017997\|Ga0184610_1132109	Not Available	811	Open in IMG/M
3300018052\|Ga0184638_1051054	All Organisms → cellular organisms → Bacteria	1505	Open in IMG/M
3300019880\|Ga0193712_1133195	Not Available	519	Open in IMG/M
3300019881\|Ga0193707_1127682	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. KB8	734	Open in IMG/M
3300020021\|Ga0193726_1192473	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300021086\|Ga0179596_10481277	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300021432\|Ga0210384_10005207	All Organisms → cellular organisms → Bacteria	14270	Open in IMG/M
3300021432\|Ga0210384_10332934	Not Available	1367	Open in IMG/M
3300025885\|Ga0207653_10012487	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2652	Open in IMG/M
3300025885\|Ga0207653_10018499	Not Available	2193	Open in IMG/M
3300025885\|Ga0207653_10169037	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300025910\|Ga0207684_10004790	All Organisms → cellular organisms → Bacteria	12673	Open in IMG/M
3300025910\|Ga0207684_10010054	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	8333	Open in IMG/M
3300025910\|Ga0207684_10018821	All Organisms → cellular organisms → Bacteria	5908	Open in IMG/M
3300025910\|Ga0207684_10088067	Not Available	2645	Open in IMG/M
3300025910\|Ga0207684_10091394	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2594	Open in IMG/M
3300025910\|Ga0207684_10582498	Not Available	956	Open in IMG/M
3300025922\|Ga0207646_10083079	Not Available	2865	Open in IMG/M
3300025922\|Ga0207646_10095717	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2660	Open in IMG/M
3300025922\|Ga0207646_10354530	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1326	Open in IMG/M
3300026340\|Ga0257162_1007252	All Organisms → cellular organisms → Bacteria	1272	Open in IMG/M
3300026345\|Ga0257148_1006348	Not Available	855	Open in IMG/M
3300026354\|Ga0257180_1000658	All Organisms → cellular organisms → Bacteria	2473	Open in IMG/M
3300026358\|Ga0257166_1003465	All Organisms → cellular organisms → Bacteria	1691	Open in IMG/M
3300026489\|Ga0257160_1006910	Not Available	1510	Open in IMG/M
3300026514\|Ga0257168_1001405	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3171	Open in IMG/M
3300026551\|Ga0209648_10117122	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2156	Open in IMG/M
3300027655\|Ga0209388_1122824	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	740	Open in IMG/M
3300027671\|Ga0209588_1006487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3402	Open in IMG/M
3300027671\|Ga0209588_1146935	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	748	Open in IMG/M
3300027882\|Ga0209590_10748159	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	623	Open in IMG/M
3300027903\|Ga0209488_10112175	All Organisms → cellular organisms → Bacteria	2048	Open in IMG/M
3300031229\|Ga0299913_10020286	All Organisms → cellular organisms → Bacteria	6133	Open in IMG/M
3300031720\|Ga0307469_10310893	Not Available	1303	Open in IMG/M
3300031720\|Ga0307469_10389666	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1185	Open in IMG/M
3300031820\|Ga0307473_10205926	Not Available	1172	Open in IMG/M
3300031820\|Ga0307473_10365524	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	933	Open in IMG/M
3300032174\|Ga0307470_11418106	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	574	Open in IMG/M
3300032174\|Ga0307470_11888761	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300032180\|Ga0307471_102247573	Not Available	687	Open in IMG/M
3300032205\|Ga0307472_100257948	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1372	Open in IMG/M
3300032205\|Ga0307472_101363063	Not Available	686	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.13%
Host-Associated	Host-Associated	1.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.26%
Aquatic	Environmental → Aquatic	1.87%
Plants	Host-Associated → Plants	1.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.26%
Sediment	Environmental → Aquatic → Sediment	1.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.81%
Loam	Environmental → Terrestrial → Soil → Loam	36.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.19%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	32.71%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.87%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	33.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	32.71%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	8.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.87%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300019880	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a1	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026345	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-A	Environmental	Open in IMG/M
3300026354	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F12B_109545791	3300000443	Soil	MDPASQRIRDKLWYGLLPNVAPVKTWGGYGTGHKPCDGCDVTIAAREVEHEVELADGRTLSFHIACAKLWQVLRTALPENQ*
F14TB_1007848872	3300001431	Soil	MDPASQRIRDKLWYGLLPNVAPVKTWGGYGTGHKPCDGCDVTIAAREVEHEVELADGRTLSFHIACAKLWQGLRTALPENQ*
JGI25615J43890_10349613	3300002910	Grasslands Soil	MDPAAQRIRDKLWYGILPNVRPLKTRGGHGTGHKLCDGCDVTIWPKEAEQEVELEGGRTLRFHVACAGLWQVLRSALPR*
Ga0066388_1039866641	3300005332	Tropical Forest Soil	MDPASQYIRDKIWYGLLPNATPVKAWSGRGTGHKLCDGCDATIAPKEIERGVELNDGRTLHFHAACAGLWQVFGTALPSSRGKRLRG*
Ga0066388_1055530812	3300005332	Tropical Forest Soil	MDPASQRIRDKVWYGLLPDVTPVNAWSGHGTGHKLCDGCDVTIAPKEVERGIELDDGRTLHFHVACAGLWQVFRTALPPSRGKKLRG*
Ga0070703_100243983	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MDPASQRIRDKLWYGLLPNVAPVKTSGVGHGTGHKLCDGCDATIWPKDAEQEVKLKDGRTLRFHIACAGLWQVLRSALPRR
Ga0070703_105840342	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MDPAAQRIRDKLWYGILPNVSPLKTRSGHGTGHKLCDGCDVTIWPKEAEQEVELEGGRTLRFHVACAGLWQVLRSALPRRTG*
Ga0070705_1008996681	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	FEVAMDPASQRIRDKLWYGILPNVAPVKTRGGHGTGHKLCDGCDATIWPNEGEQEVELKSGRRLRFHVACASLWQVLRAALPRA*
Ga0070694_1006079723	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MDPAAQRIRDKLWYGILPNVAPVKTWGGYGTGHKLCGGCDVTIAAKEVEHEIELEDGRTLRFHVACASLWQVLRTALPTGRGRSVE*
Ga0070708_1000081664	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MDPASQRIRDKLWYGLLPNVAPVKTSGVGHGTGHKLCDGCDATIWPKDAEQEVKLKDGRTLRFHIACAGLWQVLRSALPRRAG*
Ga0070708_1000290033	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MDPAAQRIRDKLWYGVLPNVTPIKTSGVGHGTGHKLCDGCDATIWPKEAEQEVELEGGRTLRFHVACASLWQVLKSALPRA*
Ga0070708_1000369995	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MDPASRRIRDKLWYGLLPNVTPVKTWGGYGTGHKLCDGCDGTIAPKEVEHEVELEDGRTLRFHVACAGLWQVLRTALPN*
Ga0070708_1000512674	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MDPAAQRIRDKLWYGILPNVRPLKTRGGHGTGHKLCDGCDVTIWPKEAEQEVELEDGRTLRFHVACTSLWQVLRSALPR*
Ga0070708_1001888624	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MDPASQRIRDKLWYGILPNVAPVKTRGGHGTGHKLCDGCDATIWPNEGEQEVELKSGRRLRFHVACASLWQVLRAALPRA*
Ga0070708_1006338323	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MDPAAQRIRDKLWYGLLPNVTPVKTSGVGHGTGHKLCDGCDVTIWPKEAEQEVELEGGRTLRFHVACASLWQVLRSALPRV*
Ga0070708_1006348783	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MDPAAQRIRDKLWYGILPNVSPLKTRSGHGTGHKLCDGCDVTIWPKEAEREIEVKGGRTLRFHVACAGLWQVLRSALPRREAD*
Ga0070706_1000790415	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MDPASRRIRDKLWYGLLPNVTPVKTWGGYGTGHKLCDGCDGTIAPKEVEHEVELEDGRTLRFHVACAGLWQVLRTALPTSRGGQ*
Ga0070706_1002150984	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	GRSLPLGRRPRRYNFEVAMDPASQRIRDKLWYGILPNVAPVKTRGGHGTGHKLCDGCDATIWPNEGEQEVELKSGRRLRFHVACASLWQVLRAALPRA*
Ga0070706_1007560562	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	LTGPLRWTAAQRIRDKLWYGILLNVRPLKTRGGHGTGHKLCDGCDVTIWPKEAEQEVELEDGRTLRFHVACASLWQVLRSALPR*
Ga0070707_1004639942	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MDPAAQRIRDKLWYGLLPNVTPVKTSGVGHGTGHKLCDGCDATIWPKEAEQEVELEGSRTLRFHVACAGLWQVLRSALPR*
Ga0070698_1006038351	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	ASQRIRDKLWYGILPNVAPVKTRVGHGTGHKLCDGCDTTIWPNEGEQEVELKSGRRLRFHVACASLWQVLRAALPRA*
Ga0070698_1007721313	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MDPAAQRIRDKLWYGVLPNVRPLKTRGGHGTGHKLCDGCDVTIWPKEAEQEVELEGGRTLRFHVACASLWQVLRSALPRV*
Ga0070698_1007956702	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MDPAAQRIRDKLWYGILPNVGPLKTRGGHGTGHKLCDGCDVTIWPKEAEQEVELEGGRTLRFHVACASLWQVLRSALPR*
Ga0070699_1001248005	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MDPAAQRIRDKLWYGILPNVRPLKTRGGHGTGHKLCDGCDVTIWPKEAEQEVELEGGRTLRFHVACASLWQVL
Ga0070697_1003006383	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MDPAAQRIRDKLWCGLLPKVGPVNTSGVGHGTGHKLCDGCDATIWPKEAEQEVELEGGRTLRFHVACASLWQVLRSALPRV*
Ga0070696_1009403962	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MDPAAQRIRDKLWYGILPNVSPLKTRSGHGTGHKLCDGCDVTIWPKEAEQEIEVKGGRTLRFHVACAGLWQV
Ga0070715_101579732	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	ILPNVSPLKTRSGHGTGHKLCDGCDVTIWPKEAEQEIEVKGGRTLRFHVACAGLWQVLRSALPRRETSCS*
Ga0070716_1010229421	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MDPAAQRIRDKLWYGILPNVSPLKTRSGHGTGHKLCDGCDVTIWPKEAEQEIEVKGGRTLRFHVACAGLWQVLRSALPRRE
Ga0079220_100999981	3300006806	Agricultural Soil	QRIRDKVWYGILPNLTPVKIWDASGTGHKLCDGCDATITPKEIERGVELGDGRTLRFHAACASLWQVLRMALPEDR*
Ga0075425_1001010332	3300006854	Populus Rhizosphere	MGPAAQRIRDKLWYGILPNVRPLKTRSGHGTGHRLCDGCDVTIWPKEAEQEVELEGGRTLRFHVACASLWQVLRSALPR*
Ga0075436_1000869812	3300006914	Populus Rhizosphere	MDPAAQRIRDKLWYGILLNVRPLKTRGGHGTGHKLCDGCDVTIWPKEAEREVELEGGRTLRFHVACASLWQVLRSALPR*
Ga0099791_100065107	3300007255	Vadose Zone Soil	MDPASQRIRDKLWYGILPTVAPVKTRGSHGTGHKLCDGCDATIWPNEGEQDVELKSGRRLRFHVACASLWQVLRAALPRA*
Ga0099791_105666251	3300007255	Vadose Zone Soil	MDPASQRIRDKLWYGILPNVAPVKTRGGHGTGHKLCDGCDATIWPNEGEQEVELKSGRRLRFHVACAGLWQVLRTTLPTSRGK*
Ga0099793_101201833	3300007258	Vadose Zone Soil	MDPAAQRIRDKLWYGILPNVRPLKTRGGHGTGHKLCDGCDATIWPKEAEQEVELEGGRRLRFHVACASLWQVLRSALPR*
Ga0099794_100063778	3300007265	Vadose Zone Soil	MDPAAQRIRDKLWYGILPNVRPLKTRGGHGTGHKLCDGCDVTIWPKEAEQEVELEGGRTLRFHVACASLWQVLRSALPR*
Ga0099795_105055031	3300007788	Vadose Zone Soil	MDPASQRIRDKLWYGILPNVAPVKTRGGHGTGHKLCDGCDATIWPNEGEQEVELKSGRRLRFHVACASLWQVLRSALPRA*
Ga0099829_101281924	3300009038	Vadose Zone Soil	MDPASQRIRDKLWYGILPNVAPVKTRGSHGTGHKLCDGCDATIWPNEGEQEVELKSGRRLRFHVACASLWQVLRAALPRA*
Ga0099830_105971581	3300009088	Vadose Zone Soil	MDPAAQRIRDKLWYGLLPNVTPIKTSGVGHGTGHKLCDGCDATIWPKEAEQEVELEGGRTLRFHVACASLWQVLRSALPRA*
Ga0099828_100869373	3300009089	Vadose Zone Soil	MDPAAQRIRDKLWYGILPNVTPVKTSGVGHGTGHKLCDGCDATIWPTEAEQGVRLKDGRTLRFHVACAGLWPVLRSALPR*
Ga0099828_108676272	3300009089	Vadose Zone Soil	MDPAAQRIRDKLWYGLLPNVTPIKTSGVGHGTGHKLCDGCDATIWPNEGEQDVELKSGRRLRFHVACASLWQVLRAALPRA*
Ga0099827_105660282	3300009090	Vadose Zone Soil	MDPAAQRIRDKLWYGVLPNVTPIKTSGVGHGTGHKLCDGCDATIWPKEAEQEVELEGGRTLRFHVACASLWQVLRSALPR*
Ga0099792_100569014	3300009143	Vadose Zone Soil	MDPASQRIRDKLWYGILPNVAPVKTRGSHGTGHKLCDGCDATIWPNEGEQDVELKSGRRLRFHVACASLWQVLRAALPRA*
Ga0126370_113812432	3300010358	Tropical Forest Soil	MDPASQRIRDKVWYGLLPDVTPVKAWSGNGTVHKLCDGCDVTIAPKEVERGVELEDGRTLRFHVACASLWQVLRTALPASRAKIR*
Ga0126376_110165072	3300010359	Tropical Forest Soil	MDPAAQRIRDKVWYGLLPDATPTKTWSGHGTGHKLCDGCDVTIAPKEVERGVELEDGRTLHFHVACAGLWQVFRTALPPSRGKRVRG*
Ga0134122_116497632	3300010400	Terrestrial Soil	MDPASQRIRDKLWYGILPNVAPVKTRSGHGTGHKLCDGCDATIWPNEGEQEVELKSGRRLRFHVACASLWQVLRAALPRA*
Ga0137391_102073643	3300011270	Vadose Zone Soil	MDPAAQRIRDKLWYGILPNVKPLKTRGGHGTGHKLCDGCDVTIWPKEAEQEVELHDGRTLRFHVACAGLWQVLKSALPRRTG*
Ga0137389_106991674	3300012096	Vadose Zone Soil	PAAQRIRDKLWYGILPNVAPVKTRGSHGTGHKLCDGCDETIWPNEGEQDVELKSGRRLRFHVACASLWQVLRAALPRA*
Ga0137389_109114182	3300012096	Vadose Zone Soil	MDPAAQRIRDKLWYGILPNVRPLKTRGGHGTGHKLCDGCDVTIWPKEAEQEVEVKGGRTLRFHVACAGL
Ga0137388_116016902	3300012189	Vadose Zone Soil	IRDKLWYGLLPNVTPIKTSGVGHGTGHKLCDGCDATIWPKEAEQEVELEGGRTLRFHVACASLWQVLRSALPRA*
Ga0137363_108918551	3300012202	Vadose Zone Soil	MDPASQRIRDKLWYGILPNVAPVKTRGGHGTGHKLCDGCDATIWPNEGEQEVELKSGRRLRFHVACASLWQVLRA
Ga0137363_116074952	3300012202	Vadose Zone Soil	MDPAAQRIRGKLWYGVLPNVRPLKTRGGHGTGHKLCDGCDVTIWPKEAEQEVELEGGRTLRFHVACAGLWQVLRSALPR*
Ga0137399_103823361	3300012203	Vadose Zone Soil	EVAMDPASQRIRDKLWYGILPNVAPVKTRGSHGTGHKLCDGCDATIWPNEGEQEVELKSGRRLRFHVACASLWQVLRAALPRA*
Ga0137362_100919472	3300012205	Vadose Zone Soil	MDPAAQRIRDKLWYGLLPNVTPIKMSGVGHGTGHKLCDGCDATIWPKEAEQEVELEGGRTLRFHVACASLWQVLRSALPRA*
Ga0137381_106297021	3300012207	Vadose Zone Soil	MDPAAQRIRDKLWYGILPNVTPVKTSGVGHGTGHKLCDGCDVTIWPQEAEQEVELEGGRTLRFHVACASLWQVLRSALPR*
Ga0137360_100632324	3300012361	Vadose Zone Soil	MDPASQRIRDKLWYGILPNVAPVKTRGGHGTGHKWCDGCDATIWPNEGEQEVELKSGRRLRFHVACASLWQVLRAALPRA*
Ga0137360_101353423	3300012361	Vadose Zone Soil	MDPAAQRIRDKLWYGILPNVRPLKTRGGHGTGHKLCDGCDVTIWPEEAEQEVELEGGRTLRFHVACASLWQVLRSALPR*
Ga0137361_101990346	3300012362	Vadose Zone Soil	AQRIRDKLWYGILPNVRPLKTRGGHGTGHKLCDGCDVTIWPEEAEQEVELEGGRTLRFHVACASLWQVLRSALPR*
Ga0137361_108877331	3300012362	Vadose Zone Soil	KLWYGILPNVRPLKTRGGHGTGHKLCDGCDVTIWLKEAEQEVELEGGRTLRFHVACAGLWQVLRSALPR*
Ga0137390_101267941	3300012363	Vadose Zone Soil	MDPTAQRIRDKLWYGILPNVKPLKTRGGHGTGHKLCDGCDVTIWPKEAEQEVELRDGRTLRFHVACAGLWQVLKSALPRRTG*
Ga0137390_104598071	3300012363	Vadose Zone Soil	TTPMDPAAQRIRDKLWYGILPNVRPLKTRGGHGTGHKLCDGCDVTIWPKEAEQEVELEGGRTLRFHVACAGLWQVLRSALPR*
Ga0137390_105314581	3300012363	Vadose Zone Soil	LRMDPAAQRIRDKLWYGILPNVAPVKTSGFGHGTGHKLCDGCDATIWPNEGEQDVELKSGRRLRFHVACASLWQVLRAALPRA*
Ga0137395_100018671	3300012917	Vadose Zone Soil	RIRDKLWYGILPNVRPLKTRGGHGTGHKLCDGCDVTIWPKEAEQEVELEGGRTLRFHGACASLWQVLRSALPR*
Ga0137395_104816821	3300012917	Vadose Zone Soil	MDPAAQRIRDKLWYGILPNVKPLKTRGGHGTGHKLCDGCDVTIWPKEAEQEVELRDGRTLRFHVACAGLWQVLKSALPRRTG*
Ga0137419_106839423	3300012925	Vadose Zone Soil	MDPAAQRIRDKLWYGLLPNVTPVKTSGVGHGTGHKLCDGCDATIWPKEAEQEVELEGGRTLRFHVACAS
Ga0164303_102074713	3300012957	Soil	MDPASQRIRDKLWYGILPNVAPVKTRVGHGTGHKLCDGCDATIWPNEGEQEVELKSGRRLRFHVACASLWQVLRAALPRA*
Ga0184610_11321092	3300017997	Groundwater Sediment	MLRGPMDPASQRIRDKLWYGLLPNVAPVKTWGGYGTGHKLCDGCDVTITPKEVEHEVELEDGRTLRFHVA
Ga0184638_10510542	3300018052	Groundwater Sediment	MLRGPMDPASQRIRDKLWYGLLPNVAPVKTWGGYGTGHKLCDGCDVTITPKEVEHEVELGDGRTLRFHVACASLWQVLRTALPENR
Ga0193712_11331952	3300019880	Soil	MYALRPTMDPAAQRIRDKLWYRILPNVTPVKTWGGHGTGHKLCDGCDGTIALKEVESEVEIEGGRTLTFHVKCASLWQVLREALPTRNPEVGEA
Ga0193707_11276822	3300019881	Soil	MYALRPTMDPAAQRIRDKLWYRILPNVTPVKTWGGHGTGHKLCDGCDGTIALKEVESEVEIEGGRTLTFHVKCASLWQVLREALPTRTREVG
Ga0193726_11924731	3300020021	Soil	MYALRPTMDPAAQRIRDKLWYRILPNVTPVKTWGGHGTGHKLCDGCDGTIALKEVESEVEIEGGRTLTFHVKCASLWQVLREALPTRNPEVG
Ga0179596_104812772	3300021086	Vadose Zone Soil	MDPAAQRIRDKLWYGILPNVRPLKTRGGHGTGHKLCDGCDVTIWPKEAEQEVELEGGRTLRFHVACAGLWQVLRSALPR
Ga0210384_100052073	3300021432	Soil	MGPAAQRIRDKLWYGILPNVRPLKTRSGHGTGHRLCDGCDVTIWPKEAEQEVELEGGRTLRFHVACASLWQVLRSALPR
Ga0210384_103329342	3300021432	Soil	MDPAAQRIRDKLWYGILPNVRPFKTRSGHGTGHKLCDGCDVTIWPKEAEQEVEVKDGRTLHFHVACAALWQVLRSALPRA
Ga0207653_100124873	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MDPAAQRIRDKLWYGILPNVSPLKTRSGHGTGHKLCDGCDVTIWPKEAEQEVELEGGRTLRFHVACAGLWQVLRSALPRRTG
Ga0207653_100184991	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MDPASQRIRDKLWYGLLPNVAPVKTSGVGHGTGHKLCDGCDATIWPKDAEQEVKLKDGRTLRFHIACAGLWQVLRSALP
Ga0207653_101690373	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	NFEVAMDPASQRIRDKLWYGILPNVAPVKTRGGHGTGHKLCDGCDATIWPNEGEQEVELKSGRRLRFHVACASLWQVLRSALPRV
Ga0207684_1000479013	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MDPAAQRIRGKLWYGVLPNVRPLKTPGGHGTGHKLCDGCDVTIWPKEAEQEVELEGGRTLRFHVACASLWQVLRSALPR
Ga0207684_100100543	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MDPASQRIRDKLWYGLLPNVAPVKTSGVGHGTGHKLCDGCDATIWPKDAEQEVKLKDGRTLRFHIACAGLWQVLRSALPRRAG
Ga0207684_100188212	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MDPAAQRIRDKLWYGILPNVSPLKTRSGHGTGHKLCDGCDVTIWPKEAEREIEVKGGRTLRFHVACAGLWQVLRSALPRREAD
Ga0207684_100880674	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MDPASRRIRDKLWYGLLPNVTPVKTWGGYGTGHKLCDGCDGTIAPKEVEHEVELEDGRTLRFHVACAGLWQVLRTALPTSRGGQ
Ga0207684_100913941	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	WYGILPNVRPLKTRGGHGTGHKLCDGCDVTIWPKEAEQEVELEGGRTLRFHVACAGLWQVLRSALPRRTG
Ga0207684_105824983	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MDPASQRIRDKLWYGILPNVAPVKTRGGHGTGHKLCDGCDATIWPNEGEQEVELKSGRRLRFHVACASLWQVLRAALPRA
Ga0207646_100830796	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MDPAAQRIRDKLWYGLLPNVTPVKTSGVGHGTGHKLCDGCDATIWPKEAEQEVELEGSRTLRFHVACAGLWQVLRSALPR
Ga0207646_100957173	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MDPAAQRIRDKLWYGILPNVRPLKTRGGHGTGHKLCDGCDVTIWPKEAEQEVELEGGRTLRFHVACAGLWQVLRSALPRRTG
Ga0207646_103545303	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MDPAAQRIRDKLWYGVLPNVTPIKTSGVGHGTGHKLCDGCDATIWPKEAEQEVELEGGRTLRFHVACASLWQVLKSALPRA
Ga0257162_10072521	3300026340	Soil	LRWYGILPNVAPVKTRGSHGTGHKLCDGCDATIWPNEGEQEVELKSGRRLRFHVACASLWQVLRAALPRA
Ga0257148_10063481	3300026345	Soil	MDPASQRIRDKLWYGILPNVAPVKTRGSHGTGHKLCDGCDATIWPNEGEQDVELKSGRRLRFHVACASLWQVLRAALPRA
Ga0257180_10006583	3300026354	Soil	MLRTASRRPRSGHNRHFLRWYGILPNVAPVKTRGSHGTGHKLCDGCDATIWPNEGEQEVELKSGRRLRFHVACASLWQVLRAALPRA
Ga0257166_10034653	3300026358	Soil	MDPASQRIRDKLWYGILPNVAPVKTRGSHGTGHKLCDGCDATIWPNEGEQEVELKSGRRLRFHVACASLWQVLRAALPRA
Ga0257160_10069104	3300026489	Soil	DKLWYGILPNVAPVKTRGSHGTGHKLCDGCDATIWPNEGEQEVELKSGRRLRFHVACASLWQVLRAALPRA
Ga0257168_10014053	3300026514	Soil	MDPAAQRIRDKLWYGLLPNVAPVNTSGVGHGTGHKLCDGCDATIWPKEAEKEVELEGGRTLRFHVACASLWQVLRSALLRA
Ga0209648_101171222	3300026551	Grasslands Soil	MDPAAQRIRDKLWYGLLPNVTPIKTSGVGHGTGHKLCDGCDATIWPKEAEQEVELEGGRTLRFHVACASLWQVLRSALPRA
Ga0209388_11228242	3300027655	Vadose Zone Soil	MDPAAQRIRDKLWYGILPNVRPLKTRGGHGTGHKLCDGCDVTIWPKEAEQEVELEGGRTLRFHVACASLWQVLRSALPRA
Ga0209588_10064875	3300027671	Vadose Zone Soil	MDPASQRIRDKLWYGILPTVAPVKTRGSHGTGHKLCDGCDATIWPNEGEQEVELKSGRRLRFHVACASLWQVLRAALPRA
Ga0209588_11469353	3300027671	Vadose Zone Soil	MDPAAQRIRDKLWYGLLPNVTPIKTSGVGHGTGHKLCDGCDATIWPKEAEQEVELEGGRTLRFHVACASLWQVLRSALPR
Ga0209590_107481591	3300027882	Vadose Zone Soil	MDPAAQRIRDKLWYGVLPNVTPIKTSGVGHGTGHKLCDGCDATIWPKEAEQEVELEGGRTLRFHVACASLWQVLKSALPR
Ga0209488_101121755	3300027903	Vadose Zone Soil	MDPAAQRIRDKLWYGILPNVRPLKTRGGHGTGHKLCDGCDVTIWPKEAEQEVELEGGRTLRFHVACASLWQVLRSALPR
Ga0299913_100202867	3300031229	Soil	MLRRPMDPASQRIRDKLWYGLLPNVAPVKTWGGYGTGHKLCDGCDVTITPKEVEHEVELEDGRTLRFHIACASLWQVLRTVLPRDR
Ga0307469_103108932	3300031720	Hardwood Forest Soil	MDPASQRIRDKLWYGLLPNVAPVKTSGVGHGTGHKLCDGCDATIWPKDAEQEVKLKDGRTLRFHIACAGLWQVLRSALPRRTG
Ga0307469_103896662	3300031720	Hardwood Forest Soil	MDPAAQRIRDKLWCGLLPKVGPVNTSGVGHGTGHKLCDGCDATIWPKEAEQEVELEGGRTLRFHVACASLWQVLRSALPRA
Ga0307473_102059261	3300031820	Hardwood Forest Soil	MDPAAQRIRDKLWYGILPNVSPLKTRSGHGTGHKLCDGCDVTIWPKEAEQEIEVKGGRTLRFHVACAGLWQVLRSALPRREAD
Ga0307473_103655243	3300031820	Hardwood Forest Soil	QRIRDKLWYGLLPNVAPVKTSGVGHGTGHKLCDGCDATIWPKDAEQEVKLKDGRTLRFHIACAGLWQVLRSALPRRTG
Ga0307470_114181062	3300032174	Hardwood Forest Soil	MDPAAQRIRDKLWYGLLPNVTPVKTSGVGHGTGHKLCDGCDATIWPKEAEQEVELEGGRTLRFHVACASLWQVLRSALPRA
Ga0307470_118887612	3300032174	Hardwood Forest Soil	MDPAAQRIRDKLWYGLLPNVAPVKTSGVGHGTGHKLCDGCDATIRPKEPEQEVELEGGRTLRFHVACAGLWQVLRSALPRRTG
Ga0307471_1022475732	3300032180	Hardwood Forest Soil	MDPAAQRIRDKLWYGILPNVSPLKTRSGHGTGHKLCDGCDVTIWPKEAEQEIEVKGGRTLRFHVACA
Ga0307472_1002579481	3300032205	Hardwood Forest Soil	LTGPLRDPAARRIRDKLWYGILPNVSPLKTRSGHGTGHKLCDGCDVTIWPKEAEQEVEVKGGRTLRFHVACAGLWQVLRTALPTTRGK
Ga0307472_1013630631	3300032205	Hardwood Forest Soil	MDPASQRIRDKLWYGLLPNVAPVNTSGVGHGTGHKLCDGCDATIWPKEAEQEVELEGGRTLRFHV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092801

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences