Metagenome Family F092798

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092798
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	43 residues
Representative Sequence	SVSPAKKDVDPLVKELVSSFKLVPRNLDAEETKRLSSEAKAQR
Number of Associated Samples	94
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.93 %
% of genes near scaffold ends (potentially truncated)	98.13 %
% of genes from short scaffolds (< 2000 bps)	86.92 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.131 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.626 % of family members)
Environment Ontology (ENVO)	Unclassified (31.776 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.664 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.58% β-sheet: 0.00% Coil/Unstructured: 70.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF07007	LprI	5.61
PF01436	NHL	4.67
PF13414	TPR_11	3.74
PF13855	LRR_8	0.93
PF08238	Sel1	0.93
PF08450	SGL	0.93
PF07719	TPR_2	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG3755	Uncharacterized conserved protein YecT, DUF1311 family	Function unknown [S]	5.61
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.93
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.13 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.13 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.13 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	92.52 %
Unclassified	root	N/A	1.87 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	92.52 %
Unclassified	root	N/A	1.87 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	56.07 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	2.80 %
Unclassified	root	N/A	1.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	56.07 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	2.80 %
Unclassified	root	N/A	1.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	56.07 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	2.80 %
Unclassified	root	N/A	1.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	56.07 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	1.87 %
Unclassified	root	N/A	1.87 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	56.07 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1.87 %
Unclassified	root	N/A	1.87 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000043\|ARcpr5yngRDRAFT_c013146	Not Available	696	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1031644	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	765	Open in IMG/M
3300000956\|JGI10216J12902_102805492	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	3075	Open in IMG/M
3300002899\|JGIcombinedJ43975_10007224	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1802	Open in IMG/M
3300004463\|Ga0063356_101072508	Not Available	1158	Open in IMG/M
3300005166\|Ga0066674_10071749	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1586	Open in IMG/M
3300005172\|Ga0066683_10124429	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1574	Open in IMG/M
3300005179\|Ga0066684_10697944	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	679	Open in IMG/M
3300005186\|Ga0066676_10794170	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	641	Open in IMG/M
3300005290\|Ga0065712_10676539	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	556	Open in IMG/M
3300005335\|Ga0070666_11221151	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	560	Open in IMG/M
3300005356\|Ga0070674_100225823	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1459	Open in IMG/M
3300005447\|Ga0066689_10348355	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	923	Open in IMG/M
3300005540\|Ga0066697_10710631	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	549	Open in IMG/M
3300005574\|Ga0066694_10535538	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	545	Open in IMG/M
3300006034\|Ga0066656_10624878	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	696	Open in IMG/M
3300006046\|Ga0066652_101734788	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	567	Open in IMG/M
3300006046\|Ga0066652_101864443	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	541	Open in IMG/M
3300006163\|Ga0070715_10194081	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1027	Open in IMG/M
3300006791\|Ga0066653_10577011	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	570	Open in IMG/M
3300006796\|Ga0066665_10085141	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2282	Open in IMG/M
3300009012\|Ga0066710_104579714	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	517	Open in IMG/M
3300009137\|Ga0066709_100639868	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1521	Open in IMG/M
3300009174\|Ga0105241_11376980	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	675	Open in IMG/M
3300010301\|Ga0134070_10136427	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	873	Open in IMG/M
3300010301\|Ga0134070_10207498	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	721	Open in IMG/M
3300010329\|Ga0134111_10369771	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	609	Open in IMG/M
3300010329\|Ga0134111_10382176	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	600	Open in IMG/M
3300010333\|Ga0134080_10306383	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	714	Open in IMG/M
3300010333\|Ga0134080_10593218	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	538	Open in IMG/M
3300010335\|Ga0134063_10023365	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2578	Open in IMG/M
3300010336\|Ga0134071_10770946	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	513	Open in IMG/M
3300010366\|Ga0126379_10435447	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1368	Open in IMG/M
3300010376\|Ga0126381_104561449	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	534	Open in IMG/M
3300010397\|Ga0134124_10752539	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	969	Open in IMG/M
3300012202\|Ga0137363_10012767	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	5426	Open in IMG/M
3300012202\|Ga0137363_10237087	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1478	Open in IMG/M
3300012203\|Ga0137399_10619072	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	910	Open in IMG/M
3300012209\|Ga0137379_10193332	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1947	Open in IMG/M
3300012211\|Ga0137377_10433121	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1253	Open in IMG/M
3300012351\|Ga0137386_10072091	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2412	Open in IMG/M
3300012354\|Ga0137366_10462317	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	919	Open in IMG/M
3300012361\|Ga0137360_11329286	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	620	Open in IMG/M
3300012362\|Ga0137361_10576725	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1031	Open in IMG/M
3300012683\|Ga0137398_10223768	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1247	Open in IMG/M
3300012917\|Ga0137395_10870439	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	653	Open in IMG/M
3300012929\|Ga0137404_12225599	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	513	Open in IMG/M
3300012960\|Ga0164301_10421289	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	941	Open in IMG/M
3300012960\|Ga0164301_11717586	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	525	Open in IMG/M
3300012975\|Ga0134110_10002377	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	6798	Open in IMG/M
3300015358\|Ga0134089_10330256	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	639	Open in IMG/M
3300015371\|Ga0132258_13578469	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1063	Open in IMG/M
3300016270\|Ga0182036_11149704	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	644	Open in IMG/M
3300018028\|Ga0184608_10069892	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1421	Open in IMG/M
3300018028\|Ga0184608_10507519	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	515	Open in IMG/M
3300018067\|Ga0184611_1026339	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1832	Open in IMG/M
3300018071\|Ga0184618_10060078	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1405	Open in IMG/M
3300018073\|Ga0184624_10156342	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1004	Open in IMG/M
3300018073\|Ga0184624_10321864	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	693	Open in IMG/M
3300018075\|Ga0184632_10051707	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1775	Open in IMG/M
3300018431\|Ga0066655_10792464	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	644	Open in IMG/M
3300018482\|Ga0066669_10344422	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1234	Open in IMG/M
3300018482\|Ga0066669_11901937	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	554	Open in IMG/M
3300019789\|Ga0137408_1373096	All Organisms → cellular organisms → Bacteria	8088	Open in IMG/M
3300019869\|Ga0193705_1004525	All Organisms → cellular organisms → Bacteria	3046	Open in IMG/M
3300019869\|Ga0193705_1058564	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300019879\|Ga0193723_1150873	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	623	Open in IMG/M
3300019881\|Ga0193707_1154612	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	636	Open in IMG/M
3300019885\|Ga0193747_1016840	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1787	Open in IMG/M
3300019886\|Ga0193727_1023703	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2165	Open in IMG/M
3300019997\|Ga0193711_1039549	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	578	Open in IMG/M
3300020000\|Ga0193692_1027708	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1333	Open in IMG/M
3300020006\|Ga0193735_1111382	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	753	Open in IMG/M
3300020012\|Ga0193732_1016604	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1272	Open in IMG/M
3300020020\|Ga0193738_1066858	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1064	Open in IMG/M
3300020059\|Ga0193745_1018889	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1502	Open in IMG/M
3300021413\|Ga0193750_1035621	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1108	Open in IMG/M
3300022534\|Ga0224452_1027052	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1634	Open in IMG/M
3300022534\|Ga0224452_1223661	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	577	Open in IMG/M
3300025315\|Ga0207697_10027293	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2335	Open in IMG/M
3300025905\|Ga0207685_10529904	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	624	Open in IMG/M
3300025906\|Ga0207699_10120503	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1696	Open in IMG/M
3300025911\|Ga0207654_11198999	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	553	Open in IMG/M
3300025916\|Ga0207663_11647345	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	516	Open in IMG/M
3300025930\|Ga0207701_10909328	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	737	Open in IMG/M
3300025936\|Ga0207670_10072690	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2382	Open in IMG/M
3300026306\|Ga0209468_1041205	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1587	Open in IMG/M
3300026312\|Ga0209153_1174199	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	777	Open in IMG/M
3300026326\|Ga0209801_1099777	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1256	Open in IMG/M
3300026329\|Ga0209375_1196020	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	775	Open in IMG/M
3300026342\|Ga0209057_1044977	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2141	Open in IMG/M
3300026374\|Ga0257146_1018607	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1131	Open in IMG/M
3300026540\|Ga0209376_1173687	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1009	Open in IMG/M
3300026540\|Ga0209376_1272814	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	702	Open in IMG/M
3300028536\|Ga0137415_11423087	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	516	Open in IMG/M
3300028707\|Ga0307291_1183592	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	538	Open in IMG/M
3300028717\|Ga0307298_10019423	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1754	Open in IMG/M
3300028784\|Ga0307282_10023479	All Organisms → cellular organisms → Bacteria	2616	Open in IMG/M
3300028819\|Ga0307296_10028022	All Organisms → cellular organisms → Bacteria	2969	Open in IMG/M
3300028828\|Ga0307312_10978804	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	560	Open in IMG/M
3300028885\|Ga0307304_10063117	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1404	Open in IMG/M
3300031057\|Ga0170834_105008038	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	529	Open in IMG/M
3300031446\|Ga0170820_10610738	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1963	Open in IMG/M
3300031446\|Ga0170820_13723520	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	947	Open in IMG/M
3300031469\|Ga0170819_15051285	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1789	Open in IMG/M
3300032076\|Ga0306924_12102277	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	579	Open in IMG/M
3300032205\|Ga0307472_100764311	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	878	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.59%
Host-Associated	Host-Associated	8.41%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.18%
Aquatic	Environmental → Aquatic	8.41%
Plants	Host-Associated → Plants	8.41%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.18%
Sediment	Environmental → Aquatic → Sediment	8.41%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.41%
Loam	Environmental → Terrestrial → Soil → Loam	4.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.87%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	45.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	24.30%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.41%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	18.69%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.08%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	9.35%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.54%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000043	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 young rhizosphere	Host-Associated	Open in IMG/M
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019997	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m2	Environmental	Open in IMG/M
3300020000	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020012	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1	Environmental	Open in IMG/M
3300020020	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1	Environmental	Open in IMG/M
3300020059	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a2	Environmental	Open in IMG/M
3300021413	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ARcpr5yngRDRAFT_0131461	3300000043	Arabidopsis Rhizosphere	VFVLSVSPAKKDVDPSVKELVSSFKLVPRNLDSEEAKRLSSEAKAQR*
AP72_2010_repI_A01DRAFT_10316442	3300000579	Forest Soil	DRLVKELVSSFKLVPRTLDAEETKRLSSEAKAQR*
JGI10216J12902_1028054921	3300000956	Soil	AKDGVFALSVSPAKKDVDPLVKELVSSFKLVPRNLDAEEAKKLSSEAKAQR*
JGIcombinedJ43975_100072243	3300002899	Soil	GVFALSVSSSAKKGLDQMVKELVSSFKLVPRNLDADEAKRLSSEAKAQP*
Ga0063356_1010725082	3300004463	Arabidopsis Thaliana Rhizosphere	SPAKKDVAPLVKELVSSFNLVPRNLDAEETKRLSSEAKAQR*
Ga0066674_100717491	3300005166	Soil	GVFVLSVSPAKKDIDPLVKELVSSFKLVPRKLDAEETKRLSSEAKAQR*
Ga0066683_101244291	3300005172	Soil	VSPAKKDIDPLVKELVSSFKLVPRNLDAEETKRLSSEAKTQR*
Ga0066684_106979442	3300005179	Soil	VSPAKKDIDPLVKELVSSFKLVPRKLDAEETKRLSSEAKAQR*
Ga0066676_107941702	3300005186	Soil	SPAKKDIDPLVKELVSSFKLVPRTLDAEETKRLSSEAKAQR*
Ga0065712_106765393	3300005290	Miscanthus Rhizosphere	LSVSPAKKDVDPLVKELVSSFKLVPRNLDAEETKRLSSEAKAQR*
Ga0070666_112211512	3300005335	Switchgrass Rhizosphere	LSISPAKKDVDPLVKELVSSFKLVPRNLDAEETKRLVSEAKAQR*
Ga0070674_1002258231	3300005356	Miscanthus Rhizosphere	MGFALSVSSPAKKDIDPFVKELVSSFKLVPRNLDAEETKRLSSEAKAQR*
Ga0066689_103483552	3300005447	Soil	AKKDIDPLVKELVSSFKLVPRNLDAEETKRLSSEAKAQR*
Ga0066697_107106312	3300005540	Soil	AKDGVFALSVSPAKKDIDPLVKELVSSFKLVPRTLDAEETKRLSSEAKAQR*
Ga0066694_105355382	3300005574	Soil	AKDGVFALSVSPAKKDIDPLVKQLVSSFKLVPRNLNAEETKRLSSEAKAQR*
Ga0066656_106248783	3300006034	Soil	SPAKKDIDPLVKQLVSSFKLVPRNLVPEETKRLSSEAKAQR*
Ga0066652_1017347882	3300006046	Soil	VSPAKKDIDPLVKELVSSFKLVPRTLDAEETKRLSSEAKAQR*
Ga0066652_1018644433	3300006046	Soil	IDPLVKQLVSSFKLVPRNLVPEETKRLSSEAKAQR*
Ga0070715_101940811	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	DPLVKELVSSFKLVPRKLDAEEAKRLSSEAKAQR*
Ga0066653_105770112	3300006791	Soil	PAKKDIDPLVKELVSSFKLVPRKLDAEETKRLSSEAKAQR*
Ga0066665_100851413	3300006796	Soil	LSVSPAKKDIDPLVKELVSSFKLIPRKLDAEETKRQSLEAKEQR*
Ga0066710_1045797141	3300009012	Grasslands Soil	KKDIDPLVKELVSSFKLVPRKLDAEETKRLSSEAKAQR
Ga0066709_1006398681	3300009137	Grasslands Soil	KDVDPLVKELVSSFKLVPRNLDAEETKRLSSEAKAQR*
Ga0105241_113769801	3300009174	Corn Rhizosphere	KKNVDPLTKELVSSFKLATRNLDAEEAKRLSSEANVQR*
Ga0134070_101364272	3300010301	Grasslands Soil	GVFVLSVSPAKKDIDPLVKELVSSFKLVPRKLDAEETKRLSSEVKAQR*
Ga0134070_102074982	3300010301	Grasslands Soil	LSVSPAKKDVDPLVKELVSSFKLVPRTLDAEEMKRLSSEAKAQR*
Ga0134111_103697712	3300010329	Grasslands Soil	SVSPAKKDVDPLVKELVSSFKLVPRNLDAEETKRLSSEAKAQR*
Ga0134111_103821762	3300010329	Grasslands Soil	VSPAKKDIDPLVKELVSSFKLVPRTLDAEETKRLSSEANAQR*
Ga0134080_103063831	3300010333	Grasslands Soil	VFVLSISPAKKDVDPLVKELVSSFKLVPRNLDAEEAKRLPSEAKAQR*
Ga0134080_105932181	3300010333	Grasslands Soil	KKEIDPLVKELVSSFKLVPRKLDAEEAKRLSSEAKAQR*
Ga0134063_100233655	3300010335	Grasslands Soil	GIFVLSVSPAKKDIDPLVKELVSSFKLVPRNLDAEEAKRLASEAKAQR*
Ga0134071_107709461	3300010336	Grasslands Soil	VDPLVKELVSSFKVVPRNLDAEEAKRLSSEAKAQP*
Ga0126379_104354471	3300010366	Tropical Forest Soil	KDGVFVLSISPVKKDADSLVKELVSSFKLVPRELNTEEAKRLSSEAKAQR*
Ga0126381_1045614492	3300010376	Tropical Forest Soil	PAKKDIDPLVKELVSSFKLMPRELDAEEAKRLSSEAKTQR*
Ga0134124_107525392	3300010397	Terrestrial Soil	AKDGVFVLSVSPAKKDGDPSVKELVSSFKLVPRNLDAEETKRLVSEAKAQR*
Ga0137363_100127678	3300012202	Vadose Zone Soil	DPLVKELVSSFKLVPRNLDAEEAKRLSSEAKTQR*
Ga0137363_102370871	3300012202	Vadose Zone Soil	IDPLVKELVSSFKLVPRTLDTEETKRLSSEAKAQR*
Ga0137399_106190723	3300012203	Vadose Zone Soil	VFVLSVSPAKKDVDPLVKQLVNSFKLVPRNLDTEEAQRLSSEAKAQR*
Ga0137379_101933325	3300012209	Vadose Zone Soil	GVFALSVSPAKKDIDPLVKELVSSFKLVPRKLDAEETKRLSSEAKEQR*
Ga0137377_104331212	3300012211	Vadose Zone Soil	KKDIDPLVKELVSSFKLVPRKLDAEETKRLSSEAKAQR*
Ga0137386_100720911	3300012351	Vadose Zone Soil	SPAKKDVDPLVKELVSSFKLVPRTLDTEETKRLSSEAKAQR*
Ga0137366_104623171	3300012354	Vadose Zone Soil	KKDIDPLVKELVSSFKLVPRKLDAEETKRQSLEAKEQR*
Ga0137360_113292862	3300012361	Vadose Zone Soil	AKKDVDPLVKELVSSFKLVPRKLDAEEAKRLSSEAKAQR*
Ga0137361_105767252	3300012362	Vadose Zone Soil	ALSLSPAKKDVDPLVKELVSSFKLVPRNLDAEEAKRLSSEAKAQRQTFVLT*
Ga0137398_102237681	3300012683	Vadose Zone Soil	DADPLIKELVSSFKLVPRNLDAEEAKRLSSEAKTQR*
Ga0137395_108704392	3300012917	Vadose Zone Soil	SVSPAKKDVDPLVKELVSSFKLVPRKLDAEEAKRLSSETKAQR*
Ga0137404_122255992	3300012929	Vadose Zone Soil	VFALSVSPAKKDIDPLVKELVSSFKLVPRNLDAEETKRLSSEAKAQR*
Ga0164301_104212892	3300012960	Soil	AKDGVFVLSVSPAKKDVDPLVKELVSSFKLVPRNLDAEETKRLSSEAKAQR*
Ga0164301_117175862	3300012960	Soil	VLSVSPAKKDVDPLVKELVSSFKLVPRTLDAEETKRLSSEAKAQR*
Ga0134110_100023771	3300012975	Grasslands Soil	KDIDPLVKQLVSSFKLVPRNLNAEETKRLSSEAKAQR*
Ga0134089_103302561	3300015358	Grasslands Soil	VFVFSISPAKKDVDPLVKELVSSFKLVPRNLDAEEAKRLSSEAKAQP*
Ga0132258_135784691	3300015371	Arabidopsis Rhizosphere	DIDPSVKELASSFQLVPRNLPARGAKRLSSEAKAQH*
Ga0182036_111497041	3300016270	Soil	DGVFVLSVSPAKKDVDPLVKELVSSFKLVPRSLDAEETKRLSSEAKAQR
Ga0184608_100698923	3300018028	Groundwater Sediment	SSPAKKGVDPLVKELVSSFKLVPRNLDAEETKRLSSEAKGQR
Ga0184608_105075192	3300018028	Groundwater Sediment	VSSPAKKGVDPLVKELVSSFKLVPRNLDAEETKRLSSEAKAQR
Ga0184611_10263393	3300018067	Groundwater Sediment	AKDGVFALSVSSPAKKGVDPLVKELVSSFKLVPRNLDAEETKRLSSGAKAQR
Ga0184618_100600782	3300018071	Groundwater Sediment	AKDGVFALSVSSPAKKGVDPLVKELVSSFKLVPRNLDAEETKRLSTESKTQR
Ga0184624_101563422	3300018073	Groundwater Sediment	LSVSSPAQKGVDPLVKELVNSFKLVPRNLDAEETKRLSSEAKAQR
Ga0184624_103218641	3300018073	Groundwater Sediment	LSVSSPAKKGVDPLVKELVSSFKLVPRNLDAEETKRLSSEAKGQR
Ga0184632_100517073	3300018075	Groundwater Sediment	AKKGVDPLVKELVSSFKLVPRNLDAEETKRLSTGAKGQR
Ga0066655_107924642	3300018431	Grasslands Soil	SPAKKDIDPLVKELVSSFKLVPRTLDAEETKRLSSEAKAQR
Ga0066669_103444222	3300018482	Grasslands Soil	SVSPAKKDIDPLVKELVSSFKLVPRKLDAEETKRLSSEAKAQR
Ga0066669_119019372	3300018482	Grasslands Soil	VDPLVKELVSSFKLVPRTLDAEETKRLSSEAKAQR
Ga0137408_13730962	3300019789	Vadose Zone Soil	LRFRSPAKKDIDPLVKELVSSFKLVLERWMLKKRSGLSSEAKAQR
Ga0193705_10045253	3300019869	Soil	PAKKDIDPLVKELVSSFKLVPRNLDAEETKRLSSQAKAQH
Ga0193705_10585643	3300019869	Soil	ALSVSPAKKDVDPLVKELVSSFKLVPRKLDAEETKRLSSEAKAQR
Ga0193723_11508731	3300019879	Soil	SPAKKGVDPLVKELVSSFKLVPRNLDAEETKRLSSEAKAQR
Ga0193707_11546122	3300019881	Soil	VSSPAKKGVDPLVKELVSSFKLVPRNLDAEETKRLSSEAKTQR
Ga0193747_10168401	3300019885	Soil	WVFVLSVSPAKKDVDPLVKELVSSFKLVPRNLDAEETKRLSSEAKARR
Ga0193727_10237033	3300019886	Soil	PAKKDIDPLVKELVSSFKLVPRNLDAEEVKKLPSEAKAQR
Ga0193711_10395492	3300019997	Soil	LAAKDGVFALSVSSPAKKGVDPLVKELVSSFKLVPRNLDAEETKRLSLEAKTQR
Ga0193692_10277081	3300020000	Soil	KDGVFVLSVSPAKKDIDPLVKELVNSFKLVPRNLDAEEAKRLSSQAKAQR
Ga0193735_11113823	3300020006	Soil	KDGVFVLSVSPAKKDVDPLVKDLVSSFKLVPRKLDAEEAKRLSSEAKAQR
Ga0193732_10166041	3300020012	Soil	AKKDVDPLVKELVSSFKLVPRNLDAEETKRLSSEAKAQR
Ga0193738_10668583	3300020020	Soil	VSSPAKKGVDPLVKELVSSFKLVPRNLDAEETKRLSTGAKRQR
Ga0193745_10188891	3300020059	Soil	DIDPSVKELVSSFKLVPRNLDAEEAKRLSSEAKTQR
Ga0193750_10356211	3300021413	Soil	SVSSPAKKGVDPVVKELVTSFKLVPRNLDAEEAKRLSSEAKAQR
Ga0224452_10270521	3300022534	Groundwater Sediment	ALSVSSPAKKGVDPLVKELVSSFKLVPRNLDAEETKRLSTEAKTQR
Ga0224452_12236612	3300022534	Groundwater Sediment	AKKDIDPLVKELVSSFKLVPRTLDAEETKRLSSEAKGQR
Ga0207697_100272934	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	AKKGVDPLVKELVSSFKLVPRNLDAEEVKKLSSEAKAQR
Ga0207685_105299041	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	VLSVSPAKKDVDPLVKELVSSFKLVPRKLDAEEAKRLSSEAKAQR
Ga0207699_101205031	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	TGQKDVDPLVKELVSSFKLVDRNLDAEETKRLSSEAKAQR
Ga0207654_111989991	3300025911	Corn Rhizosphere	KKNVDPLTKELVSSFKLATRNLDAEEAKRLSSEANVQR
Ga0207663_116473451	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	KGVDPLVKELVSSLKLLPRNLDAEETKRLSSEAKAQR
Ga0207701_109093282	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	KKGGDPLVKELVSSFKLVPRNLDAEETKRLSSEAKAQR
Ga0207670_100726903	3300025936	Switchgrass Rhizosphere	KDADPSVKELVSSFKLVPRNLDAEETKRLVSEAKAQR
Ga0209468_10412051	3300026306	Soil	KKDVDLLVKELVSSFKLVPRTLDAEETKRLSSEAKAQR
Ga0209153_11741991	3300026312	Soil	SPAKKEVDPLVKELVGSFKLVPRNLDAEEAKRLPSEAKAQR
Ga0209801_10997772	3300026326	Soil	PAKKDIDPLVKELVSSFKLVPRKLDAEETKRLSSEAKAQR
Ga0209375_11960202	3300026329	Soil	AKKDIDPLVKELVSSFKLVPRNLDAEEAKRLSSEAKAQP
Ga0209057_10449774	3300026342	Soil	AKKEVDPLVKELVGSFKLVPRNLDAEEAKRLPSEAKAQR
Ga0257146_10186071	3300026374	Soil	DVDPLVKELVSSFKLVPRKLDAEEAKRLSSEAKAQR
Ga0209376_11736872	3300026540	Soil	KDGVFVLSVSPAKKDIDPLVKELVSSFKLVPRNLDAEETKRLSSEAKAQR
Ga0209376_12728142	3300026540	Soil	KKDIDPLVKELVSSFKLVPRKLDAEETKRLSSEVKAQR
Ga0137415_114230872	3300028536	Vadose Zone Soil	LSVSPAKKDIDPLVKELVSSFKLVPRNLDAEEAKRLSLEAKAQR
Ga0307291_11835922	3300028707	Soil	AEDGVFVLSLSPAKKDVDPSVKEFVSSFKVVPRNLDAEEAKRLSSEAKTQR
Ga0307298_100194235	3300028717	Soil	GVFALSLSPAKKDIDPLVKELVSSFKLVPRTLDAEETKRLSSEAKAQR
Ga0307282_100234793	3300028784	Soil	SLSPAKKDIDPLVKELVSSFKLVPRNLDAEETKRLSSQAKAQH
Ga0307296_100280221	3300028819	Soil	PDKKEVDPLVKELVSSFKLVPRNLDAEETKRLSSQAKAQH
Ga0307312_109788041	3300028828	Soil	SPAKKGVDPLVKELASSFKLVPRNLDAEETKRLSTEAKTQR
Ga0307304_100631173	3300028885	Soil	DVILFDRTRCERWGFVLSLSPAKKDVDPSVKELASSFKLVPRKLDAEEAKRLSSEAKTQR
Ga0170834_1050080382	3300031057	Forest Soil	SPAKKDVDPLVKELVSSFKLVPRNLDAEEAKRLSSEAKAQR
Ga0170820_106107383	3300031446	Forest Soil	VFVLSVSPAKKDVDPLVKELVSSFKLVPRNLDAEEAKRLSSEAKAQR
Ga0170820_137235201	3300031446	Forest Soil	GVFALSLSPAKKDIDPLVKELVSSFKLVPRNLDAEETKRLSSEAKAQR
Ga0170819_150512851	3300031469	Forest Soil	KKGVDPLVKELVSSFKLVPRKLNAEEAKRLSSEAKAQR
Ga0306924_121022771	3300032076	Soil	KDGVFVLSVSPAKKDVDPLVKELVSSFKLVPRSLDAEETKRLSSEAKAQR
Ga0307472_1007643112	3300032205	Hardwood Forest Soil	KKDVDPLVKELVSSFKLVPRNLDAEETKRLSAEARAQR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092798

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences