Metagenome / Metatranscriptome Family F092789

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092789
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	44 residues
Representative Sequence	MRVQAQGRGHNGKKFRETCETVVVNGHGGLLMLKHEVDNGEML
Number of Associated Samples	83
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	46.73 %
% of genes near scaffold ends (potentially truncated)	98.13 %
% of genes from short scaffolds (< 2000 bps)	86.92 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.131 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (48.598 % of family members)
Environment Ontology (ENVO)	Unclassified (42.991 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.533 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 29.58% Coil/Unstructured: 70.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01546	Peptidase_M20	23.36
PF00248	Aldo_ket_red	6.54
PF00072	Response_reg	3.74
PF00962	A_deaminase	2.80
PF03551	PadR	2.80
PF02055	Glyco_hydro_30	1.87
PF02566	OsmC	1.87
PF12704	MacB_PCD	1.87
PF10417	1-cysPrx_C	1.87
PF14026	DUF4242	0.93
PF02518	HATPase_c	0.93
PF00480	ROK	0.93
PF13384	HTH_23	0.93
PF06718	DUF1203	0.93
PF15780	ASH	0.93
PF13620	CarboxypepD_reg	0.93
PF00383	dCMP_cyt_deam_1	0.93
PF12680	SnoaL_2	0.93
PF01794	Ferric_reduct	0.93
PF04030	ALO	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	2.80
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	2.80
COG1816	Adenosine/6-amino-6-deoxyfutalosine deaminase	Nucleotide transport and metabolism [F]	2.80
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	2.80
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	1.87
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	1.87
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.87
COG5520	O-Glycosyl hydrolase	Cell wall/membrane/envelope biogenesis [M]	1.87
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.13 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.13 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.13 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	58.88 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	13.08 %
Unclassified	root	N/A	1.87 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.15 %
Unclassified	root	N/A	1.87 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.93 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.15 %
Unclassified	root	N/A	1.87 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_101793041	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300002906\|JGI25614J43888_10160255	All Organisms → cellular organisms → Bacteria → Acidobacteria	603	Open in IMG/M
3300002914\|JGI25617J43924_10114534	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	954	Open in IMG/M
3300004080\|Ga0062385_10497894	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300004091\|Ga0062387_100165687	All Organisms → cellular organisms → Bacteria → Acidobacteria	1292	Open in IMG/M
3300005541\|Ga0070733_10264807	All Organisms → cellular organisms → Bacteria	1132	Open in IMG/M
3300005602\|Ga0070762_10067728	All Organisms → cellular organisms → Bacteria → Acidobacteria	2003	Open in IMG/M
3300006102\|Ga0075015_100910140	All Organisms → cellular organisms → Bacteria → Acidobacteria	534	Open in IMG/M
3300006163\|Ga0070715_10379411	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300006176\|Ga0070765_101265407	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300007255\|Ga0099791_10070458	All Organisms → cellular organisms → Bacteria → Acidobacteria	1585	Open in IMG/M
3300007258\|Ga0099793_10274307	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	817	Open in IMG/M
3300007265\|Ga0099794_10081678	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1595	Open in IMG/M
3300007265\|Ga0099794_10126546	All Organisms → cellular organisms → Bacteria → Acidobacteria	1288	Open in IMG/M
3300007265\|Ga0099794_10452377	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	673	Open in IMG/M
3300009038\|Ga0099829_11438736	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300009090\|Ga0099827_10184586	All Organisms → cellular organisms → Bacteria	1727	Open in IMG/M
3300009137\|Ga0066709_101266946	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300009143\|Ga0099792_11145333	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300009792\|Ga0126374_10778343	All Organisms → cellular organisms → Bacteria → Acidobacteria	728	Open in IMG/M
3300010321\|Ga0134067_10056284	All Organisms → cellular organisms → Bacteria	1277	Open in IMG/M
3300010337\|Ga0134062_10433132	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300010360\|Ga0126372_11137672	All Organisms → cellular organisms → Bacteria → Acidobacteria	801	Open in IMG/M
3300010366\|Ga0126379_12817977	All Organisms → cellular organisms → Bacteria → Acidobacteria	582	Open in IMG/M
3300010376\|Ga0126381_101100782	All Organisms → cellular organisms → Bacteria → Acidobacteria	1148	Open in IMG/M
3300010379\|Ga0136449_102741914	All Organisms → cellular organisms → Bacteria → Acidobacteria	698	Open in IMG/M
3300011269\|Ga0137392_11012658	All Organisms → cellular organisms → Bacteria → Acidobacteria	682	Open in IMG/M
3300011269\|Ga0137392_11216715	All Organisms → cellular organisms → Bacteria → Acidobacteria	612	Open in IMG/M
3300011269\|Ga0137392_11353866	All Organisms → cellular organisms → Bacteria → Acidobacteria	571	Open in IMG/M
3300012096\|Ga0137389_10290930	All Organisms → cellular organisms → Bacteria	1381	Open in IMG/M
3300012096\|Ga0137389_11606522	All Organisms → cellular organisms → Bacteria → Acidobacteria	546	Open in IMG/M
3300012096\|Ga0137389_11629115	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M
3300012189\|Ga0137388_11668330	All Organisms → cellular organisms → Bacteria → Acidobacteria	572	Open in IMG/M
3300012202\|Ga0137363_10237695	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1477	Open in IMG/M
3300012202\|Ga0137363_10622849	All Organisms → cellular organisms → Bacteria → Acidobacteria	911	Open in IMG/M
3300012202\|Ga0137363_11360193	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599	Open in IMG/M
3300012202\|Ga0137363_11416289	All Organisms → cellular organisms → Bacteria → Acidobacteria	585	Open in IMG/M
3300012203\|Ga0137399_10172922	All Organisms → cellular organisms → Bacteria	1739	Open in IMG/M
3300012203\|Ga0137399_10179987	All Organisms → cellular organisms → Bacteria → Acidobacteria	1706	Open in IMG/M
3300012203\|Ga0137399_10729587	All Organisms → cellular organisms → Bacteria → Acidobacteria	834	Open in IMG/M
3300012205\|Ga0137362_10033877	All Organisms → cellular organisms → Bacteria	4069	Open in IMG/M
3300012210\|Ga0137378_11145232	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300012211\|Ga0137377_10038940	All Organisms → cellular organisms → Bacteria	4349	Open in IMG/M
3300012349\|Ga0137387_10006159	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6706	Open in IMG/M
3300012363\|Ga0137390_10831094	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300012582\|Ga0137358_10085777	All Organisms → cellular organisms → Bacteria → Acidobacteria	2123	Open in IMG/M
3300012582\|Ga0137358_10198471	All Organisms → cellular organisms → Bacteria	1369	Open in IMG/M
3300012582\|Ga0137358_10467695	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300012582\|Ga0137358_10970245	All Organisms → cellular organisms → Bacteria → Acidobacteria	552	Open in IMG/M
3300012683\|Ga0137398_10217340	Not Available	1265	Open in IMG/M
3300012685\|Ga0137397_10025092	All Organisms → cellular organisms → Bacteria → Acidobacteria	4218	Open in IMG/M
3300012917\|Ga0137395_10338079	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300012918\|Ga0137396_10013088	All Organisms → cellular organisms → Bacteria	5146	Open in IMG/M
3300012918\|Ga0137396_10597921	All Organisms → cellular organisms → Bacteria → Acidobacteria	816	Open in IMG/M
3300012922\|Ga0137394_10040078	All Organisms → cellular organisms → Bacteria → Acidobacteria	3837	Open in IMG/M
3300012925\|Ga0137419_10429624	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300012927\|Ga0137416_11733729	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	570	Open in IMG/M
3300012930\|Ga0137407_11017039	All Organisms → cellular organisms → Bacteria → Acidobacteria	785	Open in IMG/M
3300012931\|Ga0153915_10697419	All Organisms → cellular organisms → Bacteria → Acidobacteria	1173	Open in IMG/M
3300012944\|Ga0137410_10086793	All Organisms → cellular organisms → Bacteria → Acidobacteria	2298	Open in IMG/M
3300012944\|Ga0137410_10193457	All Organisms → cellular organisms → Bacteria → Acidobacteria	1572	Open in IMG/M
3300015054\|Ga0137420_1410904	All Organisms → cellular organisms → Bacteria → Acidobacteria	7274	Open in IMG/M
3300015241\|Ga0137418_10538578	Not Available	927	Open in IMG/M
3300015245\|Ga0137409_11561428	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300018012\|Ga0187810_10173858	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300018058\|Ga0187766_11321486	All Organisms → cellular organisms → Bacteria → Acidobacteria	526	Open in IMG/M
3300018090\|Ga0187770_11216411	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300020140\|Ga0179590_1012481	All Organisms → cellular organisms → Bacteria	1864	Open in IMG/M
3300020140\|Ga0179590_1046438	All Organisms → cellular organisms → Bacteria → Acidobacteria	1110	Open in IMG/M
3300020581\|Ga0210399_10065717	All Organisms → cellular organisms → Bacteria	2932	Open in IMG/M
3300021086\|Ga0179596_10181899	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1016	Open in IMG/M
3300021088\|Ga0210404_10135326	All Organisms → cellular organisms → Bacteria	1279	Open in IMG/M
3300021088\|Ga0210404_10176837	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300021088\|Ga0210404_10905401	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
3300021170\|Ga0210400_10096724	All Organisms → cellular organisms → Bacteria → Acidobacteria	2335	Open in IMG/M
3300021170\|Ga0210400_10382353	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
3300021171\|Ga0210405_11013352	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	625	Open in IMG/M
3300021403\|Ga0210397_10267260	All Organisms → cellular organisms → Bacteria	1247	Open in IMG/M
3300021433\|Ga0210391_10379960	All Organisms → cellular organisms → Bacteria → Acidobacteria	1108	Open in IMG/M
3300021478\|Ga0210402_10774145	All Organisms → cellular organisms → Bacteria → Acidobacteria	884	Open in IMG/M
3300021479\|Ga0210410_11396057	All Organisms → cellular organisms → Bacteria → Acidobacteria	593	Open in IMG/M
3300024288\|Ga0179589_10028805	All Organisms → cellular organisms → Bacteria	1927	Open in IMG/M
3300024288\|Ga0179589_10346659	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	674	Open in IMG/M
3300026325\|Ga0209152_10083502	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1179	Open in IMG/M
3300026361\|Ga0257176_1056331	All Organisms → cellular organisms → Bacteria → Acidobacteria	625	Open in IMG/M
3300026469\|Ga0257169_1012742	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300026482\|Ga0257172_1112085	All Organisms → cellular organisms → Bacteria → Acidobacteria	502	Open in IMG/M
3300026555\|Ga0179593_1007415	All Organisms → cellular organisms → Bacteria	2960	Open in IMG/M
3300027603\|Ga0209331_1067414	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300027629\|Ga0209422_1071670	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300027663\|Ga0208990_1069475	All Organisms → cellular organisms → Bacteria → Acidobacteria	1018	Open in IMG/M
3300027671\|Ga0209588_1146893	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300027684\|Ga0209626_1042059	All Organisms → cellular organisms → Bacteria	1135	Open in IMG/M
3300027737\|Ga0209038_10024195	All Organisms → cellular organisms → Bacteria	1791	Open in IMG/M
3300027867\|Ga0209167_10293863	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300028047\|Ga0209526_10187201	All Organisms → cellular organisms → Bacteria → Acidobacteria	1438	Open in IMG/M
3300030991\|Ga0073994_10026403	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300030991\|Ga0073994_12364230	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300031128\|Ga0170823_11265904	All Organisms → cellular organisms → Bacteria	2137	Open in IMG/M
3300031128\|Ga0170823_16934530	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300031231\|Ga0170824_124274805	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300031682\|Ga0318560_10785258	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300031820\|Ga0307473_11165189	All Organisms → cellular organisms → Bacteria → Acidobacteria	571	Open in IMG/M
3300031946\|Ga0310910_10159210	All Organisms → cellular organisms → Bacteria	1732	Open in IMG/M
3300031962\|Ga0307479_12091724	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300032180\|Ga0307471_101473535	All Organisms → cellular organisms → Bacteria → Acidobacteria	839	Open in IMG/M
3300032180\|Ga0307471_101833304	All Organisms → cellular organisms → Bacteria → Acidobacteria	757	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.39%
Aquatic	Environmental → Aquatic	5.61%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.39%
Freshwater	Environmental → Aquatic → Freshwater	4.67%
Sediment	Environmental → Aquatic → Sediment	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.11%
Loam	Environmental → Terrestrial → Soil → Loam	8.41%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	57.01%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.74%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.80%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.93%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	48.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.74%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.87%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.87%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.87%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.93%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300026469	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-B	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1017930412	3300002245	Forest Soil	MRLQAKGRAHDGRKFRETCETVVVSAHGALLLLKHEIDTGETL
JGI25614J43888_101602553	3300002906	Grasslands Soil	MKLQALGRNHAGKKFREVCETLVVNSHGGLLMLTHEVDNDEM
JGI25617J43924_101145342	3300002914	Grasslands Soil	MRVQAQGRAHNRKKFKETCETVVVSGHGGLLLLKHEVDDGEMLVITNPETQEEQ
Ga0062385_104978943	3300004080	Bog Forest Soil	VFHKMRVHAKGRGYRGKKFTETCETQVVNAHGGLLLLKQEV
Ga0062387_1001656871	3300004091	Bog Forest Soil	MRVQAKGRAHNGRKFKETCETVVVNAHGGLLLLKHEIDNGE
Ga0070733_102648072	3300005541	Surface Soil	MFHRMKLQALGRSHAGKKFREVCETLVVNAHGGLLML
Ga0070762_100677281	3300005602	Soil	MRLQAHGRAHNGKKFKESCETVVVNAHGGLLMLKHEID
Ga0075015_1009101401	3300006102	Watersheds	MRVQAQGRGHNGKKFRETCETLVVNGHGGLLLLKHEVDNGEMLVITNPETMEE
Ga0070715_103794112	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MKVQAQGRAHGGKKFHETCETLVVSLHGGLLMMKNEVDN
Ga0070765_1012654071	3300006176	Soil	MFHKMRVQAQGRAHNGKKFRETCETLVVNGHGGLLLL
Ga0099791_100704581	3300007255	Vadose Zone Soil	MRVHAQGRAHNGKKFRETCETVVVNGHGGLLFLKHEIDNGEMLVITN
Ga0099793_102743073	3300007258	Vadose Zone Soil	MRVEVQGRAHNRKKFKETCETVVVNGHGGLLMLKHEVDNGEMLVITNPETQE
Ga0099794_100816781	3300007265	Vadose Zone Soil	MRVLAQGRAHNGKKFRETCETVVVNGHGGLLFLKHEIDHGEMIVITN
Ga0099794_101265463	3300007265	Vadose Zone Soil	MRVQAQGRGHNGKKFRETCETLVVNGHGGLLLLKHEVDDGVMLMITNPETQ
Ga0099794_104523772	3300007265	Vadose Zone Soil	MRVQAQGRGHNGKKFRETCETVVVNGHGGLLFLKHEIDDGEMLVITNPETQE
Ga0099829_114387361	3300009038	Vadose Zone Soil	MRIQAQGRAHDRKKFKETCQTVVVNAHGGLLLLKHEVNDGEML
Ga0099827_101845862	3300009090	Vadose Zone Soil	MKIQAQGRGHNGKKFREVCETLVVSAYGGMLMLKHEVNKDE
Ga0066709_1012669462	3300009137	Grasslands Soil	MRVQALGRAHNGKKFRETCETVVVNGFGGLLLLKHEVNNGEMLVIT
Ga0099792_111453331	3300009143	Vadose Zone Soil	MRVQAQGRGHNGKKFRETCETLVVNGHGGLLLLKHEVDDG
Ga0126374_107783432	3300009792	Tropical Forest Soil	MRVQAQGRTHDRKKFKETCETVVVSAHGGLLLLKHEVD
Ga0134067_100562842	3300010321	Grasslands Soil	MRIQAQGRGHNGKKFRETCETVVVNGFGGLLLLKH
Ga0134062_104331322	3300010337	Grasslands Soil	MRVQAQGRGHNGKKFRETCETVVVNGHGGLLMLKHEVDNGEML
Ga0126372_111376721	3300010360	Tropical Forest Soil	MRVQAQGRTHDRKKFKETCETVVVSAHGGLLLLKHEVDNGEM
Ga0126379_128179771	3300010366	Tropical Forest Soil	VQAQGRAHDRKKFKETCETVVVNAHGGLLLLKHEVDNG
Ga0126381_1011007821	3300010376	Tropical Forest Soil	MRVQAQGKDHNRRKFREVCETAVVNAHGGLLVLKHEVDNGEM
Ga0136449_1027419142	3300010379	Peatlands Soil	MRVQAQGRGHNGKKFKETCETLVVNGHGGLLLLKHEID
Ga0137392_110126582	3300011269	Vadose Zone Soil	MRVQAQGRAHNRKKFKETCETVVVSGHGGLLLLKHEVADGEMLVITNP
Ga0137392_112167152	3300011269	Vadose Zone Soil	MRVLAQGRAHNGKKFRETCETVVVNGHGGLLMLKHEVDNGEMLVI
Ga0137392_113538662	3300011269	Vadose Zone Soil	MRVQAQGRAHNRKKFKETCETVVVSGHGGLLLLKHEVADGEMLVI
Ga0137389_102909301	3300012096	Vadose Zone Soil	MKLQAHGRAHNGRKFRETCETVVVNAHGALILLKHEIDDGEMLVLTHPE
Ga0137389_116065221	3300012096	Vadose Zone Soil	MRVQAQGRAHNRKKFKETCETVVVSGHGGLLLLKHEVADGE
Ga0137389_116291152	3300012096	Vadose Zone Soil	MRVLAQGRAHNGKKFRETCETVVVNGHGGLLFLKHEIDTGEMLVI
Ga0137388_116683301	3300012189	Vadose Zone Soil	MRLQAQGRAHNGRKFRETCETVVVNAHGALILLKHEIDDGEMLVL
Ga0137363_102376952	3300012202	Vadose Zone Soil	MRVQAQGRAHNRKKFKETCETVVVSGHGGLLLLKH
Ga0137363_106228491	3300012202	Vadose Zone Soil	MRVQAQGRAHNGKKFRETCETVVVNGHGGLLFLKHEIDTDEMLVI
Ga0137363_113601931	3300012202	Vadose Zone Soil	MRVEAHGRAHNGKRFRETCETVVVSGHGGLLFLKHEIDNGEMLVIT
Ga0137363_114162892	3300012202	Vadose Zone Soil	MRVQAQGRGHNGKKFRETCETVVVNGHGGLLMLKHEVDNGEMLVITNPETQEEQ
Ga0137399_101729221	3300012203	Vadose Zone Soil	MRIQAQGRAHNGKKFRETCDTLVVNGFGGLLLLKHEVNN
Ga0137399_101799871	3300012203	Vadose Zone Soil	MRVQAQGRGHNGKKFRETCETVVVNGHGGLLMLKHEVDNGEMLVITNPET
Ga0137399_107295871	3300012203	Vadose Zone Soil	MRVEVQGRAHNRKKFKETCETVVVNGHGGLLMLKHEVDNGEMLVITNPETQEDQ
Ga0137362_100338771	3300012205	Vadose Zone Soil	MRVEAHGRAHNGKRFRETCETVVVSGHGGLLFLKHEIDNGEML
Ga0137378_111452321	3300012210	Vadose Zone Soil	MKIQAQGRGHNGKKFREVCETLVVSAYGGLLMLKHEVNKDE
Ga0137377_100389404	3300012211	Vadose Zone Soil	MRVEVQGRAHNRKKFKETCETVVVNGHGGLLMLKHEVDNGEMLVITNP
Ga0137387_100061591	3300012349	Vadose Zone Soil	MRVEVQGRAHNRKKFKETCETVVVNGHGGLLMLKHEVDNGEMLVITNPETQEEQ
Ga0137390_108310942	3300012363	Vadose Zone Soil	MKLQAQGRAHNGRKFRETCETVVVNAHGALILLKHEIDDGEMLVLT
Ga0137358_100857775	3300012582	Vadose Zone Soil	MRIQAQGRAHNGKKFRETCETVVVNGFGGLLLLKHEVNNGEMLVITNPETQEELECR
Ga0137358_101984711	3300012582	Vadose Zone Soil	MPVKASGKDHNGKKFREACETVVVNVYGGLLLLKHEIKDGEMLVLENPATQEEQ
Ga0137358_104676951	3300012582	Vadose Zone Soil	MRVLAQGRAHNGKKFRETCETVVVNGHGGLLFLKHE
Ga0137358_109702452	3300012582	Vadose Zone Soil	MRLKAKGRAHDGRKFSETCETVVVNAHGALLLLKHEID
Ga0137398_102173403	3300012683	Vadose Zone Soil	VQAQGRGHNGKKFRETCETLVVNGHGGLLLLKHEVDD
Ga0137397_100250921	3300012685	Vadose Zone Soil	MRVLAQGRAHNGKKFRETCETVVVNGHGGLLFLKHEIDTGEMLVITNPE
Ga0137395_103380792	3300012917	Vadose Zone Soil	MKLQAHGRAHNGRKFRETCETVVVNSHGALILLKHEIDDGEMLVLTHPET
Ga0137396_100130881	3300012918	Vadose Zone Soil	MRVLAQGRAHNGKKFRETCETVVVNGHGGLLFLKHEIDHGEMIVITNPETLEELE
Ga0137396_105979212	3300012918	Vadose Zone Soil	MRVLAQGRAHNGKKFRETCETVVVNGHGGLLFLKHEIDHGEMIVITNPETLE
Ga0137394_100400782	3300012922	Vadose Zone Soil	MRVQAQGRGHNGKKFRETCETVVVNGQGGLLTLKHEVNNGEMLVIT
Ga0137419_104296241	3300012925	Vadose Zone Soil	MKLQAHGRGHNGRKFRETCETLVVNSHGALILLKHEIDDG
Ga0137416_117337292	3300012927	Vadose Zone Soil	MRVQAQGRGHNGKKFRETCETVVVNGQGGLLTLKHEVNNG
Ga0137407_110170391	3300012930	Vadose Zone Soil	MRVLAQGRAHNGKKFRETCETVVVNGHGGLLFLKHEIDTGEMLVITNPETLEELECR
Ga0153915_106974192	3300012931	Freshwater Wetlands	MRVQAQGRAHNGKKFKEACETVVVNAHGGLLMLKHEIDN
Ga0137410_100867933	3300012944	Vadose Zone Soil	MRVRAQGRGHNGKKFRETCETLVVYGYGGLLLLKHEIDN
Ga0137410_101934572	3300012944	Vadose Zone Soil	MRVHAQGRAHNGKKFRETCETVVVNGHGGLLFLKHEIDTGEMLVITNPETL
Ga0137420_14109045	3300015054	Vadose Zone Soil	MRVQAQGRGHNGKKFRETCETLVVNGQGGLLTLEA*
Ga0137418_105385781	3300015241	Vadose Zone Soil	MRIQAQGRAHNGKKFRETCETVVVNGFGGLLLLKHEVNNGEMLVITNPETQEELECRIV
Ga0137409_115614281	3300015245	Vadose Zone Soil	MRVLAEGRAHNGKKFRETCETVVVNGHGGLLFLKHEIDTSEMLVITNP
Ga0187810_101738582	3300018012	Freshwater Sediment	MRLQALGRSHEGRKFREICETLVVSAHGGLLNLKHEVDDGEML
Ga0187766_113214862	3300018058	Tropical Peatland	MRLQAQGRGHNGKRFKESCETVVVNAHGGLLLLKHEIDNGEMLVLT
Ga0187770_112164112	3300018090	Tropical Peatland	MRLQALGRSHEGRKFREICETLVVSAHGGLLNLQH
Ga0179590_10124811	3300020140	Vadose Zone Soil	MKMQAQGRGHNGKKFREICETLVVSAYGGLLMLKHEVDKDELMVITNPETQE
Ga0179590_10464381	3300020140	Vadose Zone Soil	MFHRMKLQALGRNHAGKKFREVCETLVVNSHGGLLMLKHEVDNDEMLVLVNPETQEEQ
Ga0210399_100657174	3300020581	Soil	MFHRMKLQALGRNHAGKKFREVCETLVVNAHGGLLILR
Ga0179596_101818991	3300021086	Vadose Zone Soil	MFHKMRVQAQGRAHNRKKFKETCETVVVSGHGGLLLLKHEVADG
Ga0210404_101353262	3300021088	Soil	MKLQAQGRGHNRRKFRETCETVVVSAHGALILLKHEIDDGEMLVLTHPET
Ga0210404_101768371	3300021088	Soil	MFHRMKLQALGRSHAGKKFREVCETLVVNAHGGLLMLKH
Ga0210404_109054012	3300021088	Soil	MRVQAQGRGHNRKKFRETCETVVVSGHGGLLLLKHEVDDGEMLVITNPETQEE
Ga0210400_100967241	3300021170	Soil	MFHRMKLQALGRNHAGKKFREVCETLVVNAHGGLLML
Ga0210400_103823532	3300021170	Soil	MKLQAQGRGHNRRKFRETCETVVVSAHGALILLKHEIDDGEM
Ga0210405_110133521	3300021171	Soil	MRLQAQGRAHNRKKFKETCETVVVNAHGGLLLLKHEVDNG
Ga0210397_102672601	3300021403	Soil	MFHKMRMQAQGRAHNGKKFRETCETLVVNGHGGLLLLKHEIDDGAML
Ga0210391_103799601	3300021433	Soil	MRVEAQGRAHNGKKFKEVCETVVVNAHGGLLMVKHEID
Ga0210402_107741453	3300021478	Soil	MKLQALGRSHAGKKFREVCETLVVNSHGGLLMLKHEVDNDEMLVLVNPETQEEQE
Ga0210410_113960572	3300021479	Soil	MFHKMRMLAQGRAHNGKKFRETCETLVVNGHGGLLILKHEIDDGAMLVLTHPDTLEEQ
Ga0179589_100288052	3300024288	Vadose Zone Soil	MKMQAQGRGHNGKKFREICETLVVSAYGGLLMLKHEVDKDELMVITNPETQEEIE
Ga0179589_103466591	3300024288	Vadose Zone Soil	MRVQAQGRGHNGKKFRETCETLVVNGHGGLLLLKHEVDDGVMLMITNP
Ga0209152_100835021	3300026325	Soil	MRVEAQGRAHDRKKFKETCETVVVNAHGGLLLLKHEVNNGEMLV
Ga0257176_10563311	3300026361	Soil	MRVQAQGRGHNGKKFRETCETVVVNGQGGLLTLKHEVNNGE
Ga0257169_10127422	3300026469	Soil	MKIQAQGRGHNGKKFREVCETLVVSAYGGLLMLKHEVNKDELMVI
Ga0257172_11120852	3300026482	Soil	MKLQAQGRAHNGRKFRETCETVVVNAHGALILLKHEI
Ga0179593_10074154	3300026555	Vadose Zone Soil	MKIQAQGRGHNGKKFREVCETLVVSAYGGLLMLNMK
Ga0209331_10674141	3300027603	Forest Soil	MFHKMRVQAQGRAHSGKKFRETCETLVVNGHGGLL
Ga0209422_10716701	3300027629	Forest Soil	MFHKMRMQAQGRAHNGKKFRETCETLVVNGHGGLLILK
Ga0208990_10694752	3300027663	Forest Soil	MFHKMRVQAQGRAHNGKKFRETCETLVVNGHGGLLILKHEIDDGAMLVLTHPET
Ga0209588_11468932	3300027671	Vadose Zone Soil	MKLQAQGRGHDGRKFRETCETVVVNAHGALILLKH
Ga0209626_10420592	3300027684	Forest Soil	MFHKMRMQAQGRAHNGKKFRETCETLVVNGHGGLLMLKHEIDDGAMLV
Ga0209038_100241952	3300027737	Bog Forest Soil	MRVHAKGRGYRGKKFTETCETLVVNAHGGLLLLKQEVN
Ga0209167_102938631	3300027867	Surface Soil	MRLQAKGRAHDGRKFKETCETVVVSAHGALVLLKHEIDTGETLVLVHPETLE
Ga0209526_101872012	3300028047	Forest Soil	MRVLAQGRAHNGKKFRETCETVVVNGHGGLLFLKHEIDAGEMLVITNPETLEE
Ga0073994_100264031	3300030991	Soil	MKIQAQGRGHNRKKFREICETLVVSVHGGLLMLKQEV
Ga0073994_123642301	3300030991	Soil	MRVQAQGRGHNGKKFRETCETVVVNGHGGLLMIKHEVDNGEMLVITNPETQE
Ga0170823_112659044	3300031128	Forest Soil	MFHRMKLQALGRNRAGKKFREVCETLVVNSHGGLLMLT
Ga0170823_169345301	3300031128	Forest Soil	MFHKMRIQAHGRAHNGKKFRETCETLVVNGQGGLLILKHEI
Ga0170824_1242748051	3300031231	Forest Soil	MFHRMRVQVQARGHNRKKFRETCETVVVNGHGGLLILKHE
Ga0318560_107852581	3300031682	Soil	MFHRMRLQALGRSHDGRKFREVCETLVVGAHGGLLMLK
Ga0307473_111651891	3300031820	Hardwood Forest Soil	MRVLAQGRAHNGKKFRETCETVVVNGHGGLLFLKHEIDNGEML
Ga0310910_101592101	3300031946	Soil	MRLQAQGRAHNGRKFREVCETMVVNAHGGLLVLQHEVDNGEL
Ga0307479_120917241	3300031962	Hardwood Forest Soil	MRLQAQGRARDRKKFKETCETVVVNAHGGLLLLKHE
Ga0307471_1014735351	3300032180	Hardwood Forest Soil	MRVLAQGRAHNGKKFRETCETVVVNGHGGLLFLKHEIDT
Ga0307471_1018333042	3300032180	Hardwood Forest Soil	MRVLAQGRAHNGKKFRETCETVVVNGHGGLLFLKHEIDTGEMLAITNPETLEELECR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092789

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences