Metagenome / Metatranscriptome Family F092740

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092740
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	46 residues
Representative Sequence	DSARIAAATAILDRGYGRPTKTTSLEVNAPFVPTKIQLVAYTGEA
Number of Associated Samples	66
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	9.35 %
% of genes near scaffold ends (potentially truncated)	71.03 %
% of genes from short scaffolds (< 2000 bps)	71.96 %
Associated GOLD sequencing projects	55
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (51.402 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (32.710 % of family members)
Environment Ontology (ENVO)	Unclassified (88.785 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (76.636 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.55% β-sheet: 26.03% Coil/Unstructured: 53.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF08402	TOBE_2	4.67
PF13356	Arm-DNA-bind_3	3.74
PF03747	ADP_ribosyl_GH	3.74
PF04055	Radical_SAM	2.80
PF04828	GFA	2.80
PF04214	DUF411	2.80
PF07040	DUF1326	2.80
PF13946	DUF4214	1.87
PF11907	DUF3427	1.87
PF07799	DUF1643	1.87
PF00884	Sulfatase	0.93
PF05787	DUF839	0.93
PF07510	DUF1524	0.93
PF02493	MORN	0.93
PF07969	Amidohydro_3	0.93
PF00528	BPD_transp_1	0.93
PF13588	HSDR_N_2	0.93
PF11924	IAT_beta	0.93
PF05762	VWA_CoxE	0.93
PF07045	DUF1330	0.93
PF11726	Inovirus_Gp2	0.93
PF00145	DNA_methylase	0.93
PF05721	PhyH	0.93
PF13362	Toprim_3	0.93
PF07729	FCD	0.93
PF08238	Sel1	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1397	ADP-ribosylglycohydrolase	Posttranslational modification, protein turnover, chaperones [O]	3.74
COG3019	Uncharacterized metal-binding protein, DUF411 family	Function unknown [S]	2.80
COG3791	Uncharacterized conserved protein	Function unknown [S]	2.80
COG5588	Uncharacterized conserved protein, DUF1326 domain	Function unknown [S]	2.80
COG4333	Uncharacterized conserved protein, DUF1643 domain	Function unknown [S]	1.87
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.93
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.93
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.93
COG2849	Antitoxin component YwqK of the YwqJK toxin-antitoxin module	Defense mechanisms [V]	0.93
COG3211	Secreted phosphatase, PhoX family	General function prediction only [R]	0.93
COG4642	Uncharacterized conserved protein	Function unknown [S]	0.93
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.40 %
Unclassified	root	N/A	48.60 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.40 %
Unclassified	root	N/A	48.60 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.40 %
Unclassified	root	N/A	48.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	42.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.60 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16.82 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	15.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.60 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	12.15 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	3.74 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	1.87 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.87 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.93 %
Sneathiellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales	0.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.60 %
Oceanospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae	3.74 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	3.74 %
Shewanellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae	1.87 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.93 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.93 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.93 %
Sneathiellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → Sneathiellaceae	0.93 %
Granulosicoccaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Granulosicoccaceae	0.93 %
Rhodobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.60 %
unclassified Oceanospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae	2.80 %
Psychrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Psychrobium	1.87 %
Rhodobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodobacter	1.87 %
Rhizobiales bacterium TMED29	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium TMED29	0.93 %
unclassified Rhodobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae → unclassified Rhodobiaceae	0.93 %
Thalassobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Thalassobium	0.93 %
Sneathiella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → Sneathiellaceae → Sneathiella	0.93 %
Granulosicoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Granulosicoccaceae → Granulosicoccus	0.93 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	0.93 %
Loktanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Loktanella	0.93 %
Marinobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Marinobacterium	0.93 %
unclassified Rhodobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.60 %
Oceanospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae → Oceanospirillaceae bacterium	2.80 %
unclassified Psychrobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Psychrobium → unclassified Psychrobium	1.87 %
Rhodobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodobacter	1.87 %
unclassified Thalassobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Thalassobium → unclassified Thalassobium	0.93 %
unclassified Granulosicoccus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Granulosicoccaceae → Granulosicoccus → unclassified Granulosicoccus	0.93 %
Rhodobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae → unclassified Rhodobiaceae → Rhodobiaceae bacterium	0.93 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.93 %
Rhodobacteraceae bacterium HIMB11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium HIMB11	0.93 %
Sneathiella glossodoripedis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → Sneathiellaceae → Sneathiella → Sneathiella glossodoripedis	0.93 %
unclassified Loktanella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Loktanella → unclassified Loktanella	0.93 %
Rhizobiales bacterium TMED29	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium TMED29	0.93 %
Marinobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Marinobacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.60 %
Oceanospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae → Oceanospirillaceae bacterium	2.80 %
Psychrobium sp. MM17-31	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Psychrobium → unclassified Psychrobium → Psychrobium sp. MM17-31	1.87 %
Rhodobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodobacter	1.87 %
Thalassobium sp. R2A62	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Thalassobium → unclassified Thalassobium → Thalassobium sp. R2A62	0.93 %
Loktanella sp. PT4BL	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Loktanella → unclassified Loktanella → Loktanella sp. PT4BL	0.93 %
Granulosicoccus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Granulosicoccaceae → Granulosicoccus → unclassified Granulosicoccus → Granulosicoccus sp.	0.93 %
Rhodobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae → unclassified Rhodobiaceae → Rhodobiaceae bacterium	0.93 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.93 %
Rhodobacteraceae bacterium HIMB11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium HIMB11	0.93 %
Sneathiella glossodoripedis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → Sneathiellaceae → Sneathiella → Sneathiella glossodoripedis	0.93 %
Rhizobiales bacterium TMED29	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium TMED29	0.93 %
Marinobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Marinobacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000101\|DelMOSum2010_c10275631	Not Available	515	Open in IMG/M
3300000115\|DelMOSum2011_c10002313	All Organisms → cellular organisms → Bacteria → Proteobacteria	12115	Open in IMG/M
3300005239\|Ga0073579_1196999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	857	Open in IMG/M
3300006164\|Ga0075441_10040288	All Organisms → cellular organisms → Bacteria	1877	Open in IMG/M
3300006164\|Ga0075441_10054345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1582	Open in IMG/M
3300006164\|Ga0075441_10068064	Not Available	1390	Open in IMG/M
3300006164\|Ga0075441_10135924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	931	Open in IMG/M
3300006165\|Ga0075443_10055478	All Organisms → cellular organisms → Bacteria → Proteobacteria	1333	Open in IMG/M
3300006190\|Ga0075446_10052045	All Organisms → cellular organisms → Bacteria → Proteobacteria	1266	Open in IMG/M
3300006190\|Ga0075446_10200565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	557	Open in IMG/M
3300006191\|Ga0075447_10016808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium TMED29	2946	Open in IMG/M
3300006191\|Ga0075447_10022516	All Organisms → cellular organisms → Bacteria	2484	Open in IMG/M
3300006193\|Ga0075445_10261890	Not Available	590	Open in IMG/M
3300006352\|Ga0075448_10084693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1000	Open in IMG/M
3300006947\|Ga0075444_10373008	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300008937\|Ga0103740_1025743	Not Available	696	Open in IMG/M
3300008938\|Ga0103741_1002960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Psychrobium → unclassified Psychrobium → Psychrobium sp. MM17-31	2169	Open in IMG/M
3300009172\|Ga0114995_10728316	Not Available	542	Open in IMG/M
3300009409\|Ga0114993_10517840	All Organisms → cellular organisms → Bacteria → Proteobacteria	885	Open in IMG/M
3300009422\|Ga0114998_10457939	Not Available	597	Open in IMG/M
3300009425\|Ga0114997_10051401	Not Available	2647	Open in IMG/M
3300009425\|Ga0114997_10143682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium HIMB11	1416	Open in IMG/M
3300009426\|Ga0115547_1073291	Not Available	1162	Open in IMG/M
3300009432\|Ga0115005_10553276	Not Available	919	Open in IMG/M
3300009432\|Ga0115005_11624428	Not Available	530	Open in IMG/M
3300009434\|Ga0115562_1047166	All Organisms → cellular organisms → Bacteria	1942	Open in IMG/M
3300009512\|Ga0115003_10638089	Not Available	621	Open in IMG/M
3300009526\|Ga0115004_10047334	All Organisms → cellular organisms → Bacteria	2768	Open in IMG/M
3300009526\|Ga0115004_10749664	Not Available	580	Open in IMG/M
3300009526\|Ga0115004_10795534	Not Available	563	Open in IMG/M
3300009705\|Ga0115000_10913649	Not Available	536	Open in IMG/M
3300009785\|Ga0115001_10072043	All Organisms → cellular organisms → Bacteria	2269	Open in IMG/M
3300009785\|Ga0115001_10338667	Not Available	949	Open in IMG/M
3300009785\|Ga0115001_10902400	Not Available	531	Open in IMG/M
3300010883\|Ga0133547_11344551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1353	Open in IMG/M
3300010883\|Ga0133547_11938168	Not Available	1082	Open in IMG/M
3300012412\|Ga0138266_1023214	Not Available	500	Open in IMG/M
3300012412\|Ga0138266_1033606	Not Available	1091	Open in IMG/M
3300012412\|Ga0138266_1090258	Not Available	717	Open in IMG/M
3300012412\|Ga0138266_1220632	Not Available	2491	Open in IMG/M
3300012412\|Ga0138266_1458255	Not Available	515	Open in IMG/M
3300012414\|Ga0138264_1131286	All Organisms → cellular organisms → Bacteria → Proteobacteria	2439	Open in IMG/M
3300012416\|Ga0138259_1048547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4124	Open in IMG/M
3300012416\|Ga0138259_1867126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Thalassobium → unclassified Thalassobium → Thalassobium sp. R2A62	6922	Open in IMG/M
3300012418\|Ga0138261_1341962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae → Oceanospirillaceae bacterium	1179	Open in IMG/M
3300012935\|Ga0138257_1096830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	794	Open in IMG/M
3300020169\|Ga0206127_1303385	Not Available	530	Open in IMG/M
3300020182\|Ga0206129_10167807	Not Available	1013	Open in IMG/M
3300020187\|Ga0206130_10041397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3443	Open in IMG/M
3300020253\|Ga0211685_1000839	All Organisms → cellular organisms → Bacteria → Proteobacteria	7840	Open in IMG/M
3300020372\|Ga0211683_10046480	Not Available	1435	Open in IMG/M
3300020372\|Ga0211683_10137904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodobacter	785	Open in IMG/M
3300020372\|Ga0211683_10159669	All Organisms → cellular organisms → Bacteria → Proteobacteria	723	Open in IMG/M
3300020376\|Ga0211682_10178564	Not Available	830	Open in IMG/M
3300020382\|Ga0211686_10024401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae → Oceanospirillaceae bacterium	2476	Open in IMG/M
3300020382\|Ga0211686_10033082	All Organisms → cellular organisms → Bacteria → Proteobacteria	2098	Open in IMG/M
3300020389\|Ga0211680_10115133	Not Available	1101	Open in IMG/M
3300025832\|Ga0209307_1028206	Not Available	2274	Open in IMG/M
3300027522\|Ga0209384_1005589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	5032	Open in IMG/M
3300027522\|Ga0209384_1010692	Not Available	3273	Open in IMG/M
3300027522\|Ga0209384_1020373	All Organisms → cellular organisms → Bacteria	2115	Open in IMG/M
3300027522\|Ga0209384_1032414	All Organisms → cellular organisms → Bacteria	1532	Open in IMG/M
3300027522\|Ga0209384_1041957	All Organisms → cellular organisms → Bacteria → Proteobacteria	1279	Open in IMG/M
3300027522\|Ga0209384_1060823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae → Oceanospirillaceae bacterium	987	Open in IMG/M
3300027668\|Ga0209482_1122023	Not Available	803	Open in IMG/M
3300027668\|Ga0209482_1127090	Not Available	779	Open in IMG/M
3300027668\|Ga0209482_1219278	Not Available	517	Open in IMG/M
3300027672\|Ga0209383_1004484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	7526	Open in IMG/M
3300027686\|Ga0209071_1001588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Loktanella → unclassified Loktanella → Loktanella sp. PT4BL	9147	Open in IMG/M
3300027714\|Ga0209815_1005140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	7037	Open in IMG/M
3300027714\|Ga0209815_1006195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6226	Open in IMG/M
3300027714\|Ga0209815_1057369	Not Available	1391	Open in IMG/M
3300027714\|Ga0209815_1248823	Not Available	537	Open in IMG/M
3300027779\|Ga0209709_10058950	Not Available	2172	Open in IMG/M
3300027780\|Ga0209502_10071994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae → unclassified Rhodobiaceae → Rhodobiaceae bacterium	1828	Open in IMG/M
3300027788\|Ga0209711_10141997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → Sneathiellaceae → Sneathiella → Sneathiella glossodoripedis	1163	Open in IMG/M
3300027788\|Ga0209711_10327819	Not Available	652	Open in IMG/M
3300027801\|Ga0209091_10336840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Marinobacterium	702	Open in IMG/M
3300027849\|Ga0209712_10122694	Not Available	1492	Open in IMG/M
3300027849\|Ga0209712_10149822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodobacter	1335	Open in IMG/M
3300027849\|Ga0209712_10555636	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300027883\|Ga0209713_10641474	Not Available	681	Open in IMG/M
3300031141\|Ga0308021_10006883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	5008	Open in IMG/M
3300031519\|Ga0307488_10383562	Not Available	875	Open in IMG/M
3300031589\|Ga0307996_1001942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	5604	Open in IMG/M
3300031594\|Ga0302131_1102166	Not Available	1001	Open in IMG/M
3300031594\|Ga0302131_1290622	Not Available	514	Open in IMG/M
3300031599\|Ga0308007_10325705	Not Available	505	Open in IMG/M
3300031612\|Ga0308009_10111439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1040	Open in IMG/M
3300031612\|Ga0308009_10313217	Not Available	578	Open in IMG/M
3300031621\|Ga0302114_10097074	Not Available	1362	Open in IMG/M
3300031621\|Ga0302114_10383015	Not Available	529	Open in IMG/M
3300031626\|Ga0302121_10128560	Not Available	733	Open in IMG/M
3300031644\|Ga0308001_10031163	All Organisms → cellular organisms → Bacteria → Proteobacteria	2325	Open in IMG/M
3300031644\|Ga0308001_10299907	Not Available	605	Open in IMG/M
3300031644\|Ga0308001_10377876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	515	Open in IMG/M
3300031647\|Ga0308012_10006662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	4964	Open in IMG/M
3300031655\|Ga0308018_10107466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	974	Open in IMG/M
3300031656\|Ga0308005_10082728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	836	Open in IMG/M
3300031660\|Ga0307994_1109963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Psychrobium → unclassified Psychrobium → Psychrobium sp. MM17-31	972	Open in IMG/M
3300031696\|Ga0307995_1017650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Granulosicoccaceae → Granulosicoccus → unclassified Granulosicoccus → Granulosicoccus sp.	3288	Open in IMG/M
3300031696\|Ga0307995_1155213	Not Available	845	Open in IMG/M
3300031696\|Ga0307995_1312368	Not Available	519	Open in IMG/M
3300031702\|Ga0307998_1010041	All Organisms → cellular organisms → Bacteria → Proteobacteria	4253	Open in IMG/M
3300031705\|Ga0308003_1070297	Not Available	1168	Open in IMG/M
3300031706\|Ga0307997_10109919	Not Available	1087	Open in IMG/M
3300031706\|Ga0307997_10277033	Not Available	598	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified	59.81%
Oceanic	Environmental → Aquatic → Marine → Oceanic	31.78%
Pelagic	Environmental → Aquatic → Marine → Pelagic	5.61%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	1.87%
Coastal	Environmental → Aquatic → Marine → Coastal	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	59.81%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	31.78%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	5.61%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	32.71%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	28.97%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	17.76%
Polar Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine	9.35%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	2.80%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	2.80%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	1.87%
Ice Edge, Mcmurdo Sound, Antarctica	Environmental → Aquatic → Marine → Oceanic → Unclassified → Ice Edge, Mcmurdo Sound, Antarctica	1.87%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.93%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental	Open in IMG/M
3300005239	Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine	Environmental	Open in IMG/M
3300006164	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA	Environmental	Open in IMG/M
3300006165	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA	Environmental	Open in IMG/M
3300006190	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA	Environmental	Open in IMG/M
3300006191	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA	Environmental	Open in IMG/M
3300006193	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA	Environmental	Open in IMG/M
3300006352	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG108-DNA	Environmental	Open in IMG/M
3300006947	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA	Environmental	Open in IMG/M
3300008937	Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 3C	Environmental	Open in IMG/M
3300008938	Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 4A	Environmental	Open in IMG/M
3300009172	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154	Environmental	Open in IMG/M
3300009409	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150	Environmental	Open in IMG/M
3300009422	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138	Environmental	Open in IMG/M
3300009425	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136	Environmental	Open in IMG/M
3300009426	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420	Environmental	Open in IMG/M
3300009432	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome	Environmental	Open in IMG/M
3300009434	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516	Environmental	Open in IMG/M
3300009512	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88	Environmental	Open in IMG/M
3300009526	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90	Environmental	Open in IMG/M
3300009705	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128	Environmental	Open in IMG/M
3300009785	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130	Environmental	Open in IMG/M
3300010883	western Arctic Ocean co-assembly	Environmental	Open in IMG/M
3300012412	Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 192hr light incubation - RNA24.B_192.20151118 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012414	Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Arthur Harbor ice station, Antarctica - RNA16.ICE_1m.20151115 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012416	Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 24hr light incubation - RNA9.A_24.20151111 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012418	Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 72hr light incubation - RNA12.A_72.20151113 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012935	Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Arthur Harbor ice station, Antarctica - RNA5.ICE_1m.20151110 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020169	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1	Environmental	Open in IMG/M
3300020182	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2	Environmental	Open in IMG/M
3300020187	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1	Environmental	Open in IMG/M
3300020253	Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX555982-ERR598945)	Environmental	Open in IMG/M
3300020372	Marine microbial communities from Tara Oceans - TARA_B100000787 (ERX556133-ERR599090)	Environmental	Open in IMG/M
3300020376	Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX555997-ERR599121)	Environmental	Open in IMG/M
3300020382	Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)	Environmental	Open in IMG/M
3300020389	Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)	Environmental	Open in IMG/M
3300025832	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530 (SPAdes)	Environmental	Open in IMG/M
3300027522	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)	Environmental	Open in IMG/M
3300027668	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)	Environmental	Open in IMG/M
3300027672	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)	Environmental	Open in IMG/M
3300027686	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG108-DNA (SPAdes)	Environmental	Open in IMG/M
3300027714	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)	Environmental	Open in IMG/M
3300027779	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)	Environmental	Open in IMG/M
3300027780	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)	Environmental	Open in IMG/M
3300027788	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)	Environmental	Open in IMG/M
3300027801	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)	Environmental	Open in IMG/M
3300027849	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome (SPAdes)	Environmental	Open in IMG/M
3300027883	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome (SPAdes)	Environmental	Open in IMG/M
3300031141	Marine microbial communities from water near the shore, Antarctic Ocean - #351	Environmental	Open in IMG/M
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental	Open in IMG/M
3300031589	Marine microbial communities from David Island wharf, Antarctic Ocean - #35	Environmental	Open in IMG/M
3300031594	Marine microbial communities from Western Arctic Ocean, Canada - CB9_20m	Environmental	Open in IMG/M
3300031599	Marine microbial communities from water near the shore, Antarctic Ocean - #71	Environmental	Open in IMG/M
3300031612	Marine microbial communities from water near the shore, Antarctic Ocean - #127	Environmental	Open in IMG/M
3300031621	Marine microbial communities from Western Arctic Ocean, Canada - AG5_Surface	Environmental	Open in IMG/M
3300031626	Marine microbial communities from Western Arctic Ocean, Canada - CB21_surface	Environmental	Open in IMG/M
3300031644	Marine microbial communities from water near the shore, Antarctic Ocean - #5	Environmental	Open in IMG/M
3300031647	Marine microbial communities from water near the shore, Antarctic Ocean - #179	Environmental	Open in IMG/M
3300031655	Marine microbial communities from water near the shore, Antarctic Ocean - #282	Environmental	Open in IMG/M
3300031656	Marine microbial communities from water near the shore, Antarctic Ocean - #67	Environmental	Open in IMG/M
3300031660	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #261	Environmental	Open in IMG/M
3300031696	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #262	Environmental	Open in IMG/M
3300031702	Marine microbial communities from David Island wharf, Antarctic Ocean - #37	Environmental	Open in IMG/M
3300031705	Marine microbial communities from water near the shore, Antarctic Ocean - #36	Environmental	Open in IMG/M
3300031706	Marine microbial communities from David Island wharf, Antarctic Ocean - #36	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_102756311	3300000101	Marine	SSQSDSARIAAATAILDRGYGRPTKTTSLEVNAPLMPTKIQLVAYTGR*
DelMOSum2011_100023131	3300000115	Marine	DVMQSSHSDSARIAAATAILDRGYGRPTKTTSLEVNTPFVPTEIRLVAYTGEA*
Ga0073579_11969991	3300005239	Marine	AATAILDRGYGRPTKTTSLEVNAPLMPTKIRLVAYTGEA*
Ga0075441_100402884	3300006164	Marine	MLEEVWHGEGDSARIAAATAILDRGYGRPTKTTSLEVNAPLMPTKIRLVAYTGEA*
Ga0075441_100543452	3300006164	Marine	VDVMQSSHSDSARIAAATAILDRGYGRPTKTTSLEINTPFVPTTIQLVAYTGQAD*
Ga0075441_100680644	3300006164	Marine	MLEEVWHGEGDSARIAAATAILDRGYGRPTKTTSLEVNAPFVPTKIQLVAYTGSVPS*
Ga0075441_101359242	3300006164	Marine	MQSSQRDSAKIAVATAILDRGNGRPKKTTLLEVNAPFVPTGIRLMAYTVSLGL
Ga0075443_100554781	3300006165	Marine	MLEEVWHGEGDSARIAAATAILDWGYGRPSKTASIEVNAPFVPTIIELVAYTGSA*
Ga0075446_100520451	3300006190	Marine	RIAAATAILDWGYGRPSKTTSPEVNAPFMHTKIRLVAYTGKA*
Ga0075446_102005651	3300006190	Marine	DSARIAAATAILDRGYGRPTKTTSLEVNAPIMPTKIQLVAYTAPV*
Ga0075447_100168085	3300006191	Marine	SPIAILDRGYGRPTKTTSLEVNAPCVPTKIQLVGYTGEA*
Ga0075447_100225164	3300006191	Marine	GDSARIAAATAILDWGYGRPSKTTSPEVNAPFMHTKIRLVAYTGEA*
Ga0075445_102618901	3300006193	Marine	RIAAATAILDWGYGRPSKTTSPEVNAPFMHTKIRLVAYTGEA*
Ga0075448_100846933	3300006352	Marine	ARIAAATAILDWGYGRPSKTTSPEVNAPFMHTKIRLVAYIGEA*
Ga0075444_103730081	3300006947	Marine	SQSDSARIAAATAILDRGYGRPTKTTSLEVNAPFVPTKIQLVAYSGEA*
Ga0103740_10257432	3300008937	Ice Edge, Mcmurdo Sound, Antarctica	SQSDSARIAAATAILDRGYGRPTKTTSLEVNAPFAPTEIRLVAYTGEA*
Ga0103741_10029605	3300008938	Ice Edge, Mcmurdo Sound, Antarctica	DALVEVMQSSQIDLARIAAATAILDRGYGRAIRTTSLEVNAPFAPTTIQLVAYTGSL*
Ga0114995_107283162	3300009172	Marine	ATAILDRGYGRPTKTTSLEVNTPFVPTKIQLVAYTGEA*
Ga0114993_105178402	3300009409	Marine	ANAILDRGYGRPTKTTSLEVNAPFVPTRIELVAYSGRAD*
Ga0114998_104579392	3300009422	Marine	DSARIAAATAILDRGYGRPTKTTSLEVTTPFVPTKIQLVAYTGEA*
Ga0114997_100514011	3300009425	Marine	MKSGQSDSARIAAATAILDRDYGRLTKTTSLEVIALFVPTKIQLVAYTGAV*
Ga0114997_101436822	3300009425	Marine	SARIAAATAILDRGYGRPTKTTSLEVNAPFMPTKIQLVAYTG*
Ga0115547_10732914	3300009426	Pelagic Marine	AILDRGYGRPTKTTSLEVNAPLMPTKIQLVAYTAPV*
Ga0115005_105532761	3300009432	Marine	RIAAATAILDRGYGRPTKTTSFEVNSPFVPTKIQLVAYTGSV*
Ga0115005_116244281	3300009432	Marine	SSQSDSARIAAATAILDRGYGRPTKSTSLEVNAPLMPTKIQLVAYNGEA*
Ga0115562_10471661	3300009434	Pelagic Marine	IAAATAILDRGYGRPTKTTSLEVNAPFVPTKIQLVAYTAPV*
Ga0115003_106380891	3300009512	Marine	RITATTAILDRGYGRPTKTTSLAVNAALMPTKIQLVA*
Ga0115004_100473341	3300009526	Marine	LSDSARIAAATAILDRGYGRPTKTTSLEVNAPIMPTKIQLVAYTASV*
Ga0115004_107496641	3300009526	Marine	SQSDSARIAAATAILDRGYGRPTKMTSLEVNAPLMPTKIRLVAYTGET*
Ga0115004_107955341	3300009526	Marine	ARIAAATAILDRGYGRPTKTTSLEVNTPFVPTKIQLVAYTGEA*
Ga0115000_109136492	3300009705	Marine	QSSQSDSARIAAANAILDRGYGRPTKTTSLEVNAPLMPTKIRLVAYTGS*
Ga0115001_100720431	3300009785	Marine	SLSDSARIAAATAILDRGYGRPTKTTSLEVNAPIMPTKIQLVAYTASV*
Ga0115001_103386671	3300009785	Marine	DSARIAAATAILDRGYGRPTKTTSLEVNAPFVPTKIQLVAYTGEA*
Ga0115001_109024001	3300009785	Marine	SDSARIAAANAILDRGYGRPTKTTSIEVNAPLMPTKIRLLAYTGSA*
Ga0133547_113445511	3300010883	Marine	TAILDRGYGRPTKTTSLEVNAPLMPTKIRLVAYTGEA*
Ga0133547_119381683	3300010883	Marine	AATAILDRGYGRPTKTTSLEVNAPLMPTKIQLVAYNGEA*
Ga0138266_10232141	3300012412	Polar Marine	MNASQSDSARIAAATAILDRGYGRPTKTTSLEVNAPFAPTTIKLVAYTGSL*
Ga0138266_10336063	3300012412	Polar Marine	ATAILDRGYGRPTKITSLEVMEPFLPTKIQLVAYNAPV*
Ga0138266_10902581	3300012412	Polar Marine	MLEEVWHGEGDSARIAAATAILDWGYGRPSKTTSPEVNAPFMHTKIRLVAYTGEA*
Ga0138266_12206321	3300012412	Polar Marine	LDWGYGRPSKTASIEVNAPFVPTIIELVAYTGSA*
Ga0138266_14582552	3300012412	Polar Marine	RIAAATAILDRGYGRPTKTTSLEVNAPFVPTKIQLVAYTGEA*
Ga0138264_11312864	3300012414	Polar Marine	MNTSQSDSARIAAAAIPDQGYGRPTKTTSLEVNAPFAPTTIKLVAYTGSL*
Ga0138259_10485473	3300012416	Polar Marine	MLEEVWHGEGDSARIAAATAILDRGYGRPSKTTSLEVNAPFVPTTIQLVAYTGS*
Ga0138259_18671267	3300012416	Polar Marine	GEGDSARIAAATAILDWGYGRPSKTTSPEVNAPFMHTKIRLVAYTGEA*
Ga0138261_13419621	3300012418	Polar Marine	ARIAAATAILDWGYGRPSKTTSPEVNAPFMHTKIRLVAYTGEA*
Ga0138257_10968301	3300012935	Polar Marine	MNASQSDSARIAAATAILDRGYGRPTKTTSLEVNAPFAPTTTQLVAYTGSL*
Ga0206127_13033852	3300020169	Seawater	QSDSARIAAATAILDRGYGRPTKTTSLEVNAPLMPTKIRLVAYTGSV
Ga0206129_101678071	3300020182	Seawater	NAILDWGYGRPTKTTSLEVNAPFVPTRIELVAYSGRAD
Ga0206130_100413971	3300020187	Seawater	SDSARIAAATAILDRGYGRPTKTTSLEVNAPLMPTKIQLVAYTGA
Ga0211685_10008398	3300020253	Marine	QSSQSDSARIAAATAILDRGYGRPTKTTSLEVNAPFVPTEIRLVAYTGS
Ga0211683_100464802	3300020372	Marine	AILDRGYGRPTKTTSLEVNTPFVPTEIRLVAYTGEA
Ga0211683_101379043	3300020372	Marine	AILDRGYGRPTKTTALEVNAPIMPTKIQLVAGISKV
Ga0211683_101596691	3300020372	Marine	TAILDRGYGRPTKTTSLEVNAPLMPTKIRLVAYTG
Ga0211682_101785641	3300020376	Marine	MQSSHSDSARIAAATAILDRGYGRPTKTTSLEVHAPFVPKTIQLVAYTGSL
Ga0211686_100244012	3300020382	Marine	MLEEVWHGEGDSARIAAATAILDWGYGRPTKTTSPEVNAPFMHTKIRLVAYTGEA
Ga0211686_100330822	3300020382	Marine	VGVMDTSQSDSARIAVATAILDRSYGRPTKTTSLEVNAPFAPTAIQLVAYTGSL
Ga0211680_101151331	3300020389	Marine	TAILDRGYGRPTKTTSLEVNAPLMPTEIRLVAYTGEA
Ga0209307_10282063	3300025832	Pelagic Marine	EVMQSSQSDSARIAAATAILDRGYGRPTKTTSLEVNAPFVPTKIQLVAYTAPV
Ga0209384_10055891	3300027522	Marine	VGVMNASQSDSARIAAATAILDRGYGRPTKTTSLEVNAPFAPTTTQLVAYTGSL
Ga0209384_10106921	3300027522	Marine	MLEEVWHGEGDSARIAAATAILDWGYGRPSKTASIEVNAPFVPTIIELVAYTGSA
Ga0209384_10203734	3300027522	Marine	MLEEVWHGEGDSARIAAATAILDRGYGRPTKTTSLEVNAPLMPTKIRLVAYTGEA
Ga0209384_10324141	3300027522	Marine	MLEEVWHGEGDSARIAAATAILDWGYGRPSKTTSPEVNAPFAPTEIRLVAYTGKA
Ga0209384_10419573	3300027522	Marine	SARIAAATAILDWGYGRPSKTTSPEVNAPFMHTKIRLVAYTGKA
Ga0209384_10608231	3300027522	Marine	MLEEVWHGEGDSARIAAATAILDWGYGRPSKTTSPEVNAPFMHTKIRLVAYTGEA
Ga0209482_11220232	3300027668	Marine	IAILDRGYGRPIKTTSLEVNTPFVPTKIQLVAYAGR
Ga0209482_11270901	3300027668	Marine	SARIAAATAILDRGYGRPTKTTSLEVTAPFVPTKIQLVAYTGEA
Ga0209482_12192781	3300027668	Marine	VGVMNASQSDSARIAAATAILDRGYGRPTKTTSLEVNAPFAPTTIKLVAYTGSL
Ga0209383_100448412	3300027672	Marine	VGVMNTSQSDSARIAAAAIPDRGYGRPTKTTSLEVSAPFAPTTIQLVAYTGSL
Ga0209071_10015888	3300027686	Marine	MLEEVWHGEGDSARIAAAPAILDWGYGRPSKTTSPEVNAPFMHTKIRLVAYIGEA
Ga0209815_10051401	3300027714	Marine	MNASQSDSARIAAATAILDRGYGRPTKTTSLEVNAPFAPTTIKLVAYTGSL
Ga0209815_10061951	3300027714	Marine	ILDRGYGRPTKTTSLEVNAPLMPTKIRLVAYTGLD
Ga0209815_10573694	3300027714	Marine	MLEEVWHGEGDSARIAAATAILDRGYGRPTKTTSLEVNAPFVPTKIQLVAYTGSVPS
Ga0209815_12488232	3300027714	Marine	SARIAAATAILDRGYGRPTKATSLEVNAPFAPTEIRLVAYTGKA
Ga0209709_100589501	3300027779	Marine	MKSGQSDSARIAAATAILDRDYGRLTKTTSLEVIALFVPTKIQLVAYTGAV
Ga0209502_100719942	3300027780	Marine	ARIAAATAILDRGYGRPTKTTSLEVNAPLMPTKIRLVAYTGVD
Ga0209711_101419973	3300027788	Marine	MQSSQSDSARIAAATAILDRGCGRPTQSTSLEVNAPFVP
Ga0209711_103278191	3300027788	Marine	SARIAAATAILDRGYGRPTKTTSLEVNAPLMPTKIQLVAYTGSVPS
Ga0209091_103368401	3300027801	Marine	SSQSDSARIAAATAILDRGYGRPTKTTSLEVNAPFVPTKIQLVAYTGVD
Ga0209712_101226941	3300027849	Marine	ARIAAATAILDRGYGRPTKTTSLEVTAPFVPTKIQLVAYTGEA
Ga0209712_101498221	3300027849	Marine	QSSQSDSARIAAATAILDRGYGRPTKTTSLEVNAPLMPTKIQLVAYTKPNSISIA
Ga0209712_105556362	3300027849	Marine	MQSSQSDSARIAAATAILDRGYGRPTKTTSLEVNAPFVPTKIQLVAYTGEA
Ga0209713_106414741	3300027883	Marine	MQPSQSDSARIAAATAILDRGYGRPTKTTSLEVNAPFVPTRIELVAYSGRAD
Ga0308021_1000688311	3300031141	Marine	VGVMNTSQSDSARIAAAGIPDRGYGRPTKTTSLEVNTPFSPTTIQLVAYTGSL
Ga0307488_103835622	3300031519	Sackhole Brine	SDSARIAAATAILDRGYGRPTKTTSLEVNAPIMPTKIQLVAYTGSV
Ga0307996_100194212	3300031589	Marine	VGVMNTSQSDSARIAAAGIPDRGYGRPTKTTSLEVNTPFSPTTIQLV
Ga0302131_11021661	3300031594	Marine	SQSDSARIAAATAILDRGYGRPTKTTSLEVNAPLMPTKIQLVAYTGA
Ga0302131_12906221	3300031594	Marine	RIAAATAILDRGYGRPTKTTSLEVNAPLMPTKIRLVAYTGVD
Ga0308007_103257051	3300031599	Marine	IAAATAILDRGYGRPTKTTSLEVNTPFVPTEIRLVAYTGEA
Ga0308009_101114391	3300031612	Marine	IAAATAILDRGYGRPTKTTSLEVNAPLMPTKIRLVAYTGLD
Ga0308009_103132171	3300031612	Marine	MKSSQSDSARIAAAAAILDRGYGRPTKTTSLEVNAPFAPTKIQLVAYSAPT
Ga0302114_100970742	3300031621	Marine	VIQLEFQSDSARIAAATAILDRGYGRPTKTTSLEVNAPFVPTKIQLVAYTGEA
Ga0302114_103830151	3300031621	Marine	MQSSQSDSARIAAANAILDWGYGRPTKTTSLEVNAPFVPTRIELVAYSGRAD
Ga0302121_101285602	3300031626	Marine	QSDSARIAAATAILDRGYGRPTKTTSLEVNAPLMPTKIQLVAYTGA
Ga0308001_100311633	3300031644	Marine	VGVMNASQSDSARIAAATAIPDRGYGRPTKTTSLEVNAPFAPTTTQLVAYTGSL
Ga0308001_102999073	3300031644	Marine	MQSGQSDSARIAAATAILDRGYGRPTKTTSLEVDAPLAPTEIRLVAYTGSASD
Ga0308001_103778761	3300031644	Marine	ILDRGYGRPTKTTLLEVNAPLMPTKIRLVAYTGLD
Ga0308012_1000666211	3300031647	Marine	VGVMNASQSDSARIAAATAIPDRGYGRPTKTTSLEVNAPFAPTTI
Ga0308018_101074661	3300031655	Marine	AILDRGYGRPTKTTSLEVNAPLMPTKIRLVAYTGLD
Ga0308005_100827281	3300031656	Marine	VGVMNTSQSDSARIAAAGIPDRGYGRPTKTTSLEVNTPFSPTTIQL
Ga0307994_11099633	3300031660	Marine	MNASQSDSARIAAATAIPDRGYGRPTKTTSLEVNAPFAPTTTQLVAYTGSL
Ga0307995_10176503	3300031696	Marine	ATAILDRGYGRPTKTTSLEVNAPFVPTTIELVAYTGSA
Ga0307995_11552131	3300031696	Marine	IAAATAILDRGYGRPTKTTSLEVNAPLMPTKIRLVAYTGEA
Ga0307995_13123681	3300031696	Marine	SARIAAATAILDRGYGRPTKTTSLEVNAPFVPTIIELVAYTGSV
Ga0307998_10100411	3300031702	Marine	TAILDRGYGRPTKSTSLEVNAPFVPKEIRLVAYTGSV
Ga0308003_10702972	3300031705	Marine	SQSDSARIAAATAILDRGYGRPTKTPSLEVNAPFVPTEIRLVAYTGSV
Ga0307997_101099191	3300031706	Marine	VMQSSQSDSARIAAATAILDRGYGRPTKTTSLEVNAPLMPTKIQLVAYSKPDCISIT
Ga0307997_102770332	3300031706	Marine	MQSSQSDSARIAAATTILDRGYGRPTKTTSLEVNTPLMPTKIRLVDYTGSVPS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092740

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences