Metagenome / Metatranscriptome Family F092714

Basic Information
Family ID	F092714
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	48 residues
Representative Sequence	MSKLENIVKKVLNEAAKINFAGHSFILKVDTNEDPQKKGVKVQFLPT
Number of Associated Samples	88
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	12.90 %
% of genes near scaffold ends (potentially truncated)	84.11 %
% of genes from short scaffolds (< 2000 bps)	80.37 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Duplodnaviria (44.860 % of family members)
NCBI Taxonomy ID	2731341
Taxonomy	All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (14.019 % of family members)
Environment Ontology (ENVO)	Unclassified (51.402 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (88.785 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80. 1JGI24004J15324_101007341 2GOS2227_10427053 3JGI25132J35274_10684013 4Ga0066223_12851901 5Ga0068514_10478411 6Ga0073579_15355091 7Ga0078893_108528953 8Ga0066371_101248041 9Ga0066371_101639851 10Ga0075441_103231401 11Ga0075503_13796972 12Ga0098037_11188241 13Ga0070749_104321972 14Ga0098045_10470341 15Ga0101666_10071233 16Ga0099849_12405843 17Ga0099849_12414851 18Ga0102917_13590302 19Ga0102945_10279434 20Ga0102945_10524113 21Ga0102823_10779871 22Ga0102963_10877755 23Ga0102963_12272843 24Ga0102963_12377293 25Ga0102963_13238803 26Ga0102957_10841453 27Ga0102854_11239153 28Ga0114995_106405112 29Ga0114994_102676361 30Ga0114994_102740913 31Ga0115007_104928663 32Ga0115003_107436382 33Ga0115011_102100731 34Ga0129351_10728774 35Ga0163110_100202511 36Ga0163110_101202954 37Ga0163110_106846893 38Ga0163110_113628941 39Ga0163109_100415126 40Ga0163111_1000124413 41Ga0163111_123623493 42Ga0181390_11449132 43Ga0181373_11040311 44Ga0181433_10815861 45Ga0181389_12072651 46Ga0181392_12492743 47Ga0181411_11499943 48Ga0181414_12101123 49Ga0181410_10671953 50Ga0181379_12590043 51Ga0181607_104423801 52Ga0181576_107611752 53Ga0194029_10340853 54Ga0211505_10642213 55Ga0211505_11404871 56Ga0211477_102714673 57Ga0211583_102280593 58Ga0211587_102165923 59Ga0211523_102009551 60Ga0211644_100805291 61Ga0211644_102223971 62Ga0211528_101052431 63Ga0211702_102327401 64Ga0211576_102096883 65Ga0211574_105107491 66Ga0211642_104185681 67Ga0206126_101267553 68Ga0213866_105542931 69Ga0222717_104093121 70Ga0222717_107361703 71Ga0222718_105205941 72Ga0222716_101649311 73Ga0222716_106092653 74Ga0222715_102628891 75Ga0222719_105398553 76Ga0222719_106905041 77Ga0212024_10179411 78Ga0255765_12080573 79Ga0255753_12343641 80Ga0255753_13635171 81Ga0255759_107649731 82Ga0233402_10093505 83Ga0228653_10783803 84Ga0228673_10035535 85Ga0228675_10984581 86Ga0228651_10842851 87Ga0228629_10191171 88Ga0228654_10532023 89Ga0209136_10689103 90Ga0209771_12079193 91Ga0209374_11458621 92Ga0209362_11343001 93Ga0209932_11356131 94Ga0209929_10913733 95Ga0228644_10022741 96Ga0228644_10918591 97Ga0208922_10342231 98Ga0208304_103080601 99Ga0208304_103295833 100Ga0208305_103274181 101Ga0208671_100288764 102Ga0209404_101888883 103Ga0247582_11960721 104Ga0228640_10877811 105Ga0228615_11023673 106Ga0326511_103581461 107Ga0315315_100269769
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80. 1JGI24004J15324_101007341 2GOS2227_10427053 3JGI25132J35274_10684013 4Ga0066223_12851901 5Ga0073579_15355091 6Ga0066371_101639851 7Ga0098037_11188241 8Ga0098045_10470341 9Ga0099849_12414851 10Ga0102917_13590302 11Ga0102945_10279434 12Ga0102945_10524113 13Ga0102823_10779871 14Ga0102963_12272843 15Ga0102963_12377293 16Ga0102957_10841453 17Ga0114994_102740913 18Ga0163110_101202954 19Ga0163110_106846893 20Ga0163111_1000124413 21Ga0163111_123623493 22Ga0181389_12072651 23Ga0181411_11499943 24Ga0181410_10671953 25Ga0211505_10642213 26Ga0211505_11404871 27Ga0211574_105107491 28Ga0206126_101267553 29Ga0213866_105542931 30Ga0222715_102628891 31Ga0228673_10035535 32Ga0228629_10191171 33Ga0209136_10689103 34Ga0209362_11343001 35Ga0208671_100288764 36Ga0326511_103581461
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46. 1Ga0211644_102223971 2GOS2227_10427053 3JGI25132J35274_10684013 4Ga0066223_12851901 5Ga0073579_15355091 6Ga0078893_108528953 7Ga0066371_101248041 8Ga0066371_101639851 9Ga0075441_103231401 10Ga0075503_13796972 11Ga0098037_11188241 12Ga0098045_10470341 13Ga0101666_10071233 14Ga0099849_12405843 15Ga0099849_12414851 16Ga0102917_13590302 17Ga0102945_10279434 18Ga0102945_10524113 19Ga0102823_10779871 20Ga0102963_12272843 21Ga0102854_11239153 22Ga0114995_106405112 23Ga0114994_102676361 24Ga0115007_104928663 25Ga0115003_107436382 26Ga0163109_100415126 27Ga0181389_12072651 28Ga0181414_12101123 29Ga0181410_10671953 30Ga0181607_104423801 31Ga0181576_107611752 32Ga0194029_10340853 33Ga0211505_10642213 34Ga0211505_11404871 35Ga0211477_102714673 36Ga0211587_102165923 37Ga0211523_102009551 38Ga0211576_102096883 39Ga0206126_101267553 40Ga0213866_105542931 41Ga0222717_107361703 42Ga0222718_105205941 43Ga0222716_106092653 44Ga0222719_106905041 45Ga0255765_12080573 46Ga0255759_107649731 47Ga0228673_10035535 48Ga0209136_10689103 49Ga0209771_12079193 50Ga0209362_11343001 51Ga0208671_100288764 52Ga0228640_10877811 53Ga0326511_103581461 54Ga0315315_100269769
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.33% β-sheet: 29.33% Coil/Unstructured: 53.33%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF02709	Glyco_transf_7C	8.41
PF00535	Glycos_transf_2	3.74
PF04765	DUF616	2.80
PF00984	UDPG_MGDP_dh	2.80
PF03721	UDPG_MGDP_dh_N	1.87
PF01370	Epimerase	1.87
PF13640	2OG-FeII_Oxy_3	0.93
PF02350	Epimerase_2	0.93
PF12705	PDDEXK_1	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	4.67
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	4.67
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	1.87
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	1.87
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	1.87
COG0381	UDP-N-acetylglucosamine 2-epimerase	Cell wall/membrane/envelope biogenesis [M]	0.93
COG0707	UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase	Cell wall/membrane/envelope biogenesis [M]	0.93

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.07 %
Unclassified	root	N/A	43.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	6.54 %
Unclassified	root	N/A	43.93 %
Viruses	superkingdom	All Organisms → Viruses	49.53 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.54 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	44.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.67 %
Unclassified	root	N/A	43.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.54 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	44.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.67 %
Unclassified	root	N/A	43.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.67 %
Unclassified	root	N/A	43.93 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	44.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.54 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	44.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.67 %
Unclassified	root	N/A	43.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.54 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	7.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.67 %
Unclassified	root	N/A	43.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.67 %
Unclassified	root	N/A	43.93 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7.48 %

Scaffold	Taxonomy	Length	IMG/M Link
3300001950\|GOS2227_1042705	All Organisms → Viruses → Predicted Viral	1309	Open in IMG/M
3300002483\|JGI25132J35274_1068401	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	746	Open in IMG/M
3300004461\|Ga0066223_1285190	Not Available	913	Open in IMG/M
3300004941\|Ga0068514_1047841	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	522	Open in IMG/M
3300005239\|Ga0073579_1535509	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	739	Open in IMG/M
3300006024\|Ga0066371_10124804	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	782	Open in IMG/M
3300006024\|Ga0066371_10163985	Not Available	685	Open in IMG/M
3300006164\|Ga0075441_10323140	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	562	Open in IMG/M
3300006400\|Ga0075503_1379697	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	552	Open in IMG/M
3300006737\|Ga0098037_1118824	Not Available	905	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.07%
Host-Associated	Host-Associated	0.93%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.07%
Mammals	Host-Associated → Mammals	0.93%

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Mammals → Digestive System	0.93%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Marine	Environmental → Aquatic → Marine	89.72%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	8.41%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	19.63%
Foregut	Host-Associated → Mammals → Digestive System → Foregut	0.93%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	17.76%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.93%
Oceanic	Environmental → Aquatic → Marine → Oceanic	20.56%
Pelagic	Environmental → Aquatic → Marine → Pelagic	0.93%
River	Environmental → Aquatic → Freshwater → River	0.93%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	8.41%
Strait	Environmental → Aquatic → Marine → Strait	7.48%
Unclassified	Environmental → Aquatic → Marine → Unclassified	21.50%
Volcanic	Environmental → Aquatic → Marine → Volcanic	0.93%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	7.48%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	6.54%
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen	0.93%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	5.61%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	21.50%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	19.63%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	14.02%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	8.41%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	7.48%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	4.67%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	4.67%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	7.48%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	7.48%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.93%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.93%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	14.02%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	13.08%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	3.74%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.93%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.93%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	0.93%
Marine Water	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water	0.93%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	8.41%
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen	0.93%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	5.61%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	12.15%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	7.48%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	0.93%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	0.93%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	6.54%
Volcanic Co2 Seep Seawater	Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater	0.93%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001472	Marine viral communities from the Pacific Ocean - LP-32	Environmental	Open in IMG/M
3300001950	Marine microbial communities from Delaware Bay, New Jersey, USA - GS011	Environmental	Open in IMG/M
3300002483	Marine viral communities from the Pacific Ocean - ETNP_6_30	Environmental	Open in IMG/M
3300004461	Marine viral communities from Newfoundland, Canada BC-2	Environmental	Open in IMG/M
3300004941	Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-0.2um	Environmental	Open in IMG/M
3300005239	Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine	Environmental	Open in IMG/M
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental	Open in IMG/M
3300006024	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B	Environmental	Open in IMG/M
3300006164	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA	Environmental	Open in IMG/M
3300006400	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24004J15324_101007341	3300001472	Marine	MKLENLVNQITEAAKINFAGHKFLLKVDTNEDPQKKG
GOS2227_10427053	3300001950	Marine	LGNYLLNIVHMKKLEKIVKDVISEAAKINFAGHSFLLRVDTNEDPQKKGVKVQFVPT
JGI25132J35274_10684013	3300002483	Marine	MKQLEKYIKKTLSEAAKINFAGHKFLLKVDTNEDPQKKGVKVQFLPTQFGSITPT
Ga0066223_12851901	3300004461	Marine	MKRIQELVKMVTEAAKINFAGHSFLLKVDTNEDPNKKGVKVQFIPTE
Ga0068514_10478411	3300004941	Marine Water	MSKLENLVKSVLTEAAKINFAGHSFMLKVDTNEDPQKKGVKVQFLPTEFGSITPTE
Ga0073579_15355091	3300005239	Marine	MNKLEKLVKQVITEAAKINFAGHSFILKIDTNEDPQKKGVKVQFI
Ga0078893_108528953	3300005837	Marine Surface Water	MDIKNLIQTVTESAKINFAGHKFLLKVDTNEDPQKKG
Ga0066371_101248041	3300006024	Marine	MKQLEKYIKNVLNEAAKINFANHQFLLKVDTNEDPQKKGVKVQFLPTEFG
Ga0066371_101639851	3300006024	Marine	MNKLEQLVKETLNEAAKVNFAGHSFLLKVDTNEDPQKK
Ga0075441_103231401	3300006164	Marine	MKQLEKLVRQTLNEAAKINFAGHKFVLKVDTNEDPQKKGVKVQFLPTEFGNITPTEQN
Ga0075503_13796972	3300006400	Aqueous	MNKIEKYVKNFLSEAAKINFAGHTFILKIDTNEDPQKKGVKVQFLPTKFGSITF*
Ga0098037_11188241	3300006737	Marine	MNIENIIQQVTEAAKINFAGHSFVLKVDTNEDPQKKGVKVQFIPTEFG
Ga0070749_104321972	3300006802	Aqueous	MDIKNFINTITEAAKINFAGHKFLLKVDTNEDPKRKE*
Ga0098045_10470341	3300006922	Marine	MDKLEKAIKSILNEAAKINFAGHTFILKIDTNEDPQKKGV
Ga0101666_10071233	3300007113	Volcanic Co2 Seep Seawater	MSKKIEQYVKKLISEAARIKFAGHTFVLKVDTNEDPQKKGVKVQFLPTQFGSITTT
Ga0099849_12405843	3300007539	Aqueous	MSRLKELVNQVISEAAKINFAGHTFLLKVDTNEDPQKKG
Ga0099849_12414851	3300007539	Aqueous	MNKLESLIRKTLNEAAKINFGGHSFILKLDTNEDPNKKGIKVQFLPTEFGTISKTEHNDIAN
Ga0102917_13590302	3300007590	Estuarine	MKYIDEIKKVINEAAKVNFAGHSFILKVDVNEDPQKKGIKVQFLPTQFGAISPTEQ
Ga0102945_10279434	3300007609	Pond Water	MNKLEKLVRQTLNEAAKINFAGHQFVLKVDTNEDPNKKGVKVQFIPTQFGKI
Ga0102945_10524113	3300007609	Pond Water	MKNIKNIIKTVLQESAKVNFAGHEFLLKVDTNEDPNKKG
Ga0102823_10779871	3300007692	Estuarine	MKNLEYLVRNVLSEAAKVKFAGHTFVLKVDTNEDPQKKGVKVQFLPTEFGSITPTEQN
Ga0102963_10877755	3300009001	Pond Water	MNNLEKLVRQTLNEAAKINFAGHSFVLKVDTNEDPQKKGVK
Ga0102963_12272843	3300009001	Pond Water	MKNLEKAIKSIISEAAKIKFAGHSFLLKVDTNEDPQKKGVKVQFLPTEFGSISRTQQNDIAI
Ga0102963_12377293	3300009001	Pond Water	MKRLKEIISLVTEAAKINFADHSFLLKVDTNEDPQKKGVKVQF
Ga0102963_13238803	3300009001	Pond Water	MKQLETYARQLIREAAKINFAGHSFVLKVDTNEDPQKKGVKIQFLPTEFGSITPTEQNDI
Ga0102957_10841453	3300009027	Pond Water	MKRLKELVSMVTEAAKINFAGHSFLLKVDTNEDPNKK
Ga0102854_11239153	3300009058	Estuarine	MKQLEKYIRNVLSESAKINFAGHKFVLKVDTNEDPQKKGVKVQFLPTEFGTL
Ga0114995_106405112	3300009172	Marine	MSKKIETYIKSMLTEAAKIKFAGHTFMLKVDTNEDPQKKGVKVQFLPTEFGTITPTEQND
Ga0114994_102676361	3300009420	Marine	MEQIEKVVRSVLTEAAKINFAGHTFMLKVDTNEDPQKKGVKVQFLPTEFGKITYTEQND
Ga0114994_102740913	3300009420	Marine	MKQLEKIVKQVLNEAAKVTFAGHTFGLKVDTNEDPQKKG
Ga0115007_104928663	3300009441	Marine	MKQLEKIVKQVLNEAAKVTFAGHTFVLKVDTNEDPQKKGVKVQ
Ga0115003_107436382	3300009512	Marine	MKRLQQLVSQITEAAKVNFAGHSFLLKVDTNEDPQKKGVKVQFIPTEFG
Ga0115011_102100731	3300009593	Marine	MKRLKELVSMVTEAAKINFAGHSFLLKVDTNEDPQKKGVKVQFI
Ga0129351_10728774	3300010300	Freshwater To Marine Saline Gradient	MKRLKELVSMVTEAAKINFAGHSFLLKVDTNEDPQK
Ga0163110_100202511	3300012928	Surface Seawater	MKQLEKYIKNVINEAAKINFANHQFLLKVDTNEDPQKKG
Ga0163110_101202954	3300012928	Surface Seawater	MSKKIEQYVKKLISEAARIKFAGHTFVLKVDTNEDPQKKGVKV
Ga0163110_106846893	3300012928	Surface Seawater	MSKLENIVKKVLNEAAKINFAGHSFILKVDTNEDP
Ga0163110_113628941	3300012928	Surface Seawater	MNIENIIQQVTEAAKINFAGHSFVLKVDTNEDPQKKGVKVQFIPTE
Ga0163109_100415126	3300012936	Surface Seawater	MKNLEKYIKQTLSEAAKINFAGQSFILKVDTNEDPQKKGVKVQFLPTQFGSITPTQQNDIAIEL
Ga0163111_1000124413	3300012954	Surface Seawater	MKQLEKYIKNVINEAAKINFANHQFLLKVDTNEDPQKKGVKV*
Ga0163111_123623493	3300012954	Surface Seawater	MSLAEKYIRQVLSEAAKINFAGHQFFLKVDTNEDPNKKGVKVQFIPTEFGKLTKTEQNDIAIE
Ga0181390_11449132	3300017719	Seawater	MSKKIEQYVKKLLSESARIKFAGHSFVLKVDTNEDPQKKGVK
Ga0181373_11040311	3300017721	Marine	MKKLETLVNQVINEAAKINFAGHSFLLKIDTNEDPTKKGVKIQFIPTEFGSI
Ga0181433_10815861	3300017739	Seawater	MKLENLVQQITEAAKINFAGHQFILKVDTNEDPQKKGVKVQFIPTEFGS
Ga0181389_12072651	3300017746	Seawater	MNEQLKNYIKNLITESARIKFAGHQFVLKVDTNEDPQKKGVKVQFLPTEFGS
Ga0181392_12492743	3300017749	Seawater	MKKLEQIIEETLNEAAKVNFAGHSFLLKVDTNEDPQKK
Ga0181411_11499943	3300017755	Seawater	MKLENLVQQITEAAKINFAGHQFILKVDTNEDPQKKGVKVQFLPTQFGSITPTQQNDIAI
Ga0181414_12101123	3300017759	Seawater	MKLENLVQQITEAAKINFAGHQFILKVDTNEDPQKKGVKVQFIPTEFGSISAT
Ga0181410_10671953	3300017763	Seawater	MKKLEQIIEETLNEAAKVNFAGHSFLLKVDTNEDPQKKGVKVQFIPT
Ga0181379_12590043	3300017783	Seawater	MEMNKLEQLVEETLQEAAKVNFAGHSFLLKVDTNEDPQKKGVKVQFIPTEFGS
Ga0181607_104423801	3300017950	Salt Marsh	MKQLEKLVKEVITEAAKINFAGHSFMLKVDTNEYPQKKGVKVQFIPTQ
Ga0181576_107611752	3300017985	Salt Marsh	MKQLETYAKQLIREAAKINFAGHSFVLKVDTNEDPQKKGVKIQFLPTEFGSITPTEQNDIAI
Ga0194029_10340853	3300019751	Freshwater	MDIKNFINTITEAAKINFAGHKFLLKVDTNEDPQKKGV
Ga0211505_10642213	3300020352	Marine	MNKLETYVKEIISEATKINFAGHTFLLKTDTNEDPTKKGVKVQFVPTE
Ga0211505_11404871	3300020352	Marine	MNKLKEAIKSILNESAKINFAGHTFVLKIDTNEDPQKKGVKIQFLPT
Ga0211477_102714673	3300020374	Marine	MNKLENLVKQVISEATKINFAGHSFLLKTDTNEDPQKKGVKVQFIPTEF
Ga0211583_102280593	3300020397	Marine	MSKLENIVKKVLNEAAKINFAGHSFILKVDTNEDPQK
Ga0211587_102165923	3300020411	Marine	MSLAEKYIRQVISEAAKINFAGHQFFLKIDTNEDPNKKGVKVQFIPTEFGKLTRT
Ga0211523_102009551	3300020414	Marine	MKKLETLVKQVINEAAKINFAGHSFLLKIDTNEDPTKKGVKVQFIPTEFGSISATEQNDI
Ga0211644_100805291	3300020416	Marine	MSLAEKYIRQVISEAAKINFAGHQFFLKIDTNEDPNKKGVKVQFIPTEFGKLTRTEQN
Ga0211644_102223971	3300020416	Marine	MSKLENIVKKVLNEAAKINFAGHSFILKVDTNEDPQKKGVKVQFLPT
Ga0211528_101052431	3300020417	Marine	MSKLENIVKKVLNEAAKINFAGHSFILKVDTNEDPQKKGVKVQFLPTEFGSITATEQNDI
Ga0211702_102327401	3300020422	Marine	MSLAEKYIRQVISEAAKINFAGHQFFLKIDTNEDPNKKGVKVQFIPTEFGKLTR
Ga0211576_102096883	3300020438	Marine	MNKLESIVRQTLSEAAKIKFAGHSFILKVDTNEDPQKKGVKVQFLPTEFGSITATEQND
Ga0211574_105107491	3300020446	Marine	MKKLENLVNQVISEATKINFAGHSFLLKVDTNEDPQKKGVKVQFIPTEFGDLTTTQKNDI
Ga0211642_104185681	3300020449	Marine	MSKLENIVKEVLNEAAKINFAGHSFILKVDTNEDPQKKGVKVQFLPTE
Ga0206126_101267553	3300020595	Seawater	MDIKNLIQNITEAAKVNFAGHKFLLKVDTNEDPQKKGVKVQF
Ga0213866_105542931	3300021425	Seawater	MENLKSLIKQVISEATKVNFAGHKFVLKVDVNEDPNT
Ga0222717_104093121	3300021957	Estuarine Water	MNKLESLIRKTLNEAAKINFGGHSFILKLDTNEDPNKKGIKVQFLPTEFGTI
Ga0222717_107361703	3300021957	Estuarine Water	MKTIENIVKSVISEAAKIKFAGHSFMLKVDTNEDPQKKGVKVQFLPTEFGNMNSTEQNDIAIELET
Ga0222718_105205941	3300021958	Estuarine Water	MKRLKELVSMVTEAAKINFAGHSFLLRVDTNEDPQKKGVKVQFIPTEFGS
Ga0222716_101649311	3300021959	Estuarine Water	MNIKNLIQNVTEAAKVNFAGHKFLLKVDTNEDPQKK
Ga0222716_106092653	3300021959	Estuarine Water	MKRIQELISMVTEAAKINFAGHSFLLKIDTNEDPQKKGVK
Ga0222715_102628891	3300021960	Estuarine Water	MNKLESIVRQTLSEAAKIKFAGHSFILKVDTNEDPQKKGVKVQFLPTEFGSITATEQNDIAIELETRLE
Ga0222719_105398553	3300021964	Estuarine Water	MKRIQELIKMVTETAKINFAGHSFLLKVDTNEDPQKKGVKVQFI
Ga0222719_106905041	3300021964	Estuarine Water	MKTLEKIVRETLSEAAKIKFAGNTFMLKVDTNEDPNKKGVKVQFIPMEFGKITP
Ga0212024_10179411	3300022065	Aqueous	MKKLEKIVKDVISEAAKINFAGHSFLLRVDTNEDPQK
Ga0255765_12080573	3300022921	Salt Marsh	MKRLKEIINIVTEAAKINFAGHSFLLKVDTNEDPQKKGVKVQF
Ga0255753_12343641	3300022926	Salt Marsh	MKRLKELVRMVTEAAKINFAGHSFLLRVDTNEDPQKKGVK
Ga0255753_13635171	3300022926	Salt Marsh	MNKIEKYVKNFLSEGAKINFAGHTFILKIDTNEDPQKKGVKVQFLPTKFGSITSTE
Ga0255759_107649731	3300023178	Salt Marsh	MNKLEQYVKTFISEAAKINFAGHTFVLKVDTNEDPQKK
Ga0233402_10093505	3300024229	Seawater	MKNLEKVVKSVISEAAKIKFAGHSFLLKVDTNEDPQKKGVKVQ
Ga0228653_10783803	3300024237	Seawater	MKKLEEAIKSILNEAAKINFAGHTFVLKIDTNEDPQKKGVKVQFL
Ga0228673_10035535	3300024242	Seawater	MSKLENLIKEVLSEAAKVTFAGHKFMLKVDVNEDPQKKG
Ga0228675_10984581	3300024247	Seawater	MNIKNLIQNVTEAAKVNFAGHKFLLKVDTNEDPQKKGV
Ga0228651_10842851	3300024293	Seawater	MNIKNLIQNVTEAAKVNFAGHKFLLKVDTNEDPQKKGVK
Ga0228629_10191171	3300024296	Seawater	MNKLKEAIKSILNESAKINFAGHTFVLKIDTNEDPQKKGVKIQFLPTKFGNITSTEQNDIAIE
Ga0228654_10532023	3300024316	Seawater	MNKLESLIRKTLNEAAKINFGGHSFILKLDTNEDPNKKGIKVQFLPTEFGTISKT
Ga0209136_10689103	3300025636	Marine	MDKIEKYVRSLINEAAKIKFAGHTFMLKIDTNEDPQKKGVKVQFLPTKFGSITTT
Ga0209771_12079193	3300025701	Marine	MKKMKKLIHQLITEAAKINFAGHTFVLKIDTNEDPQKKGVKVQFLP
Ga0209374_11458621	3300025705	Marine	MKTIENIVKSVISEAAKIKFAGHSFMLKVDTNEDPQKKGVKVQFLPTEFG
Ga0209362_11343001	3300025770	Marine	MNNIEYLIRNTLSEAAKIKFAGHSFILKVDTNEDPQKKGVKVQF
Ga0209932_11356131	3300026183	Pond Water	MNKIEKYVKNFLSEAAKINFAGHTFILKIDTNEDPQKK
Ga0209929_10913733	3300026187	Pond Water	LGNYLLNIVHMKKLEKIVKNVITEAAKINFAGHSFLLRVDTNEDPQK
Ga0228644_10022741	3300026453	Seawater	MNKLKEAIKSILNESAKINFAGHTFVLKIDTNEDPQK
Ga0228644_10918591	3300026453	Seawater	MNKLESIVRQTLSEAAKIKFAGHSFILKVDTNEDPQKKGVK
Ga0208922_10342231	3300027197	Estuarine	MKNLEYLVRNVLSEAAKVKFAGHTFVLKVDTNEDPQKKGVKVQFLPTEFGSITPTEQNDI
Ga0208304_103080601	3300027751	Estuarine	MNKLETYVKEIISEATKINFAGHSFLLKTDTNEDPTKKGVKVQFVPTEFGAL
Ga0208304_103295833	3300027751	Estuarine	MNKLESIVRQTLSEAAKIKFAGHSFILKVDTNEDPQKKGVKVQF
Ga0208305_103274181	3300027753	Estuarine	MNKLETYVKEIISEATKINFAGHSFLLKTDTNEDPTKKGVKVQFVP
Ga0208671_100288764	3300027757	Estuarine	MSTKIEELVKELISESAKINFAGHKFLLKVDVNEDPQKKGVKIQFLPTQFGGI
Ga0209404_101888883	3300027906	Marine	MSLAEKYIKQVISEAAKINFAGHQFFLKIDTNEDPNKKGVK
Ga0247582_11960721	3300028109	Seawater	MNKLKEAIKSILNESAKINFAGHTFVLKIDTNEDPQKKGVKIQFLPTKF
Ga0228640_10877811	3300028273	Seawater	MKKLEQVVDKLLSEAAKINFAGHSFVLKVDTNEDPQKKGVKVQFLPTEFGSIT
Ga0228615_11023673	3300028418	Seawater	MNKLETYVKEIISEATKINFAGHTFLLKTDTNEDPTKKGV
Ga0326511_103581461	3300031867	Rumen	MKNNILEESIREVLTEATKIHFGKYNFILKVDTNEDPQKKGVKVQ
Ga0315315_100269769	3300032073	Seawater	MKKIEKYIKSLLSEAAKINFAGHTFVLKIDTNEDPQKKGVKVQF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092714

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences