NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F092714

Metagenome / Metatranscriptome Family F092714

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F092714
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 48 residues
Representative Sequence MSKLENIVKKVLNEAAKINFAGHSFILKVDTNEDPQKKGVKVQFLPT
Number of Associated Samples 88
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Viruses
% of genes with valid RBS motifs 12.90 %
% of genes near scaffold ends (potentially truncated) 84.11 %
% of genes from short scaffolds (< 2000 bps) 80.37 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Duplodnaviria (44.860 % of family members)
NCBI Taxonomy ID 2731341
Taxonomy All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine
(14.019 % of family members)
Environment Ontology (ENVO) Unclassified
(51.402 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(88.785 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 17.33%    β-sheet: 29.33%    Coil/Unstructured: 53.33%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.34
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF02709Glyco_transf_7C 8.41
PF00535Glycos_transf_2 3.74
PF04765DUF616 2.80
PF00984UDPG_MGDP_dh 2.80
PF03721UDPG_MGDP_dh_N 1.87
PF01370Epimerase 1.87
PF136402OG-FeII_Oxy_3 0.93
PF02350Epimerase_2 0.93
PF12705PDDEXK_1 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG0677UDP-N-acetyl-D-mannosaminuronate dehydrogenaseCell wall/membrane/envelope biogenesis [M] 4.67
COG1004UDP-glucose 6-dehydrogenaseCell wall/membrane/envelope biogenesis [M] 4.67
COG0240Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 1.87
COG12503-hydroxyacyl-CoA dehydrogenaseLipid transport and metabolism [I] 1.87
COG1893Ketopantoate reductaseCoenzyme transport and metabolism [H] 1.87
COG0381UDP-N-acetylglucosamine 2-epimeraseCell wall/membrane/envelope biogenesis [M] 0.93
COG0707UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferaseCell wall/membrane/envelope biogenesis [M] 0.93


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms56.07 %
UnclassifiedrootN/A43.93 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001950|GOS2227_1042705All Organisms → Viruses → Predicted Viral1309Open in IMG/M
3300002483|JGI25132J35274_1068401All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes746Open in IMG/M
3300004461|Ga0066223_1285190Not Available913Open in IMG/M
3300004941|Ga0068514_1047841All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes522Open in IMG/M
3300005239|Ga0073579_1535509All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes739Open in IMG/M
3300006024|Ga0066371_10124804All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes782Open in IMG/M
3300006024|Ga0066371_10163985Not Available685Open in IMG/M
3300006164|Ga0075441_10323140All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes562Open in IMG/M
3300006400|Ga0075503_1379697All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes552Open in IMG/M
3300006737|Ga0098037_1118824Not Available905Open in IMG/M
3300006922|Ga0098045_1047034All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1076Open in IMG/M
3300007113|Ga0101666_1007123All Organisms → cellular organisms → Bacteria1766Open in IMG/M
3300007539|Ga0099849_1240584Not Available668Open in IMG/M
3300007539|Ga0099849_1241485Not Available667Open in IMG/M
3300007609|Ga0102945_1027943Not Available1197Open in IMG/M
3300007692|Ga0102823_1077987All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes880Open in IMG/M
3300009001|Ga0102963_1087775Not Available1271Open in IMG/M
3300009001|Ga0102963_1227284All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes741Open in IMG/M
3300009001|Ga0102963_1237729Not Available722Open in IMG/M
3300009001|Ga0102963_1323880All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes606Open in IMG/M
3300009027|Ga0102957_1084145All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1101Open in IMG/M
3300009058|Ga0102854_1123915All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes740Open in IMG/M
3300009172|Ga0114995_10640511All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300009420|Ga0114994_10267636All Organisms → Viruses → Predicted Viral1142Open in IMG/M
3300009512|Ga0115003_10743638All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes570Open in IMG/M
3300009593|Ga0115011_10210073All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1442Open in IMG/M
3300010300|Ga0129351_1072877All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1392Open in IMG/M
3300012928|Ga0163110_10020251All Organisms → cellular organisms → Bacteria3897Open in IMG/M
3300012928|Ga0163110_10120295All Organisms → cellular organisms → Bacteria1782Open in IMG/M
3300012928|Ga0163110_10684689Not Available798Open in IMG/M
3300012928|Ga0163110_11362894All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes573Open in IMG/M
3300012936|Ga0163109_10041512Not Available3382Open in IMG/M
3300012954|Ga0163111_10001244Not Available15581Open in IMG/M
3300012954|Ga0163111_12362349All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes540Open in IMG/M
3300017719|Ga0181390_1144913All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300017721|Ga0181373_1104031All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes500Open in IMG/M
3300017739|Ga0181433_1081586Not Available796Open in IMG/M
3300017746|Ga0181389_1207265Not Available505Open in IMG/M
3300017749|Ga0181392_1249274Not Available500Open in IMG/M
3300017755|Ga0181411_1149994All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes671Open in IMG/M
3300017759|Ga0181414_1210112All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes502Open in IMG/M
3300017763|Ga0181410_1067195Not Available1074Open in IMG/M
3300017783|Ga0181379_1259004All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes598Open in IMG/M
3300017950|Ga0181607_10442380Not Available702Open in IMG/M
3300017985|Ga0181576_10761175All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes575Open in IMG/M
3300020352|Ga0211505_1064221Not Available889Open in IMG/M
3300020352|Ga0211505_1140487All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes570Open in IMG/M
3300020374|Ga0211477_10271467All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes578Open in IMG/M
3300020397|Ga0211583_10228059Not Available677Open in IMG/M
3300020411|Ga0211587_10216592All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes798Open in IMG/M
3300020414|Ga0211523_10200955Not Available826Open in IMG/M
3300020416|Ga0211644_10080529All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1318Open in IMG/M
3300020416|Ga0211644_10222397Not Available775Open in IMG/M
3300020417|Ga0211528_10105243All Organisms → Viruses → Predicted Viral1142Open in IMG/M
3300020422|Ga0211702_10232740All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes566Open in IMG/M
3300020438|Ga0211576_10209688All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1035Open in IMG/M
3300020446|Ga0211574_10510749All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes515Open in IMG/M
3300020449|Ga0211642_10418568All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes577Open in IMG/M
3300021957|Ga0222717_10409312Not Available748Open in IMG/M
3300021957|Ga0222717_10736170All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes500Open in IMG/M
3300021958|Ga0222718_10520594All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes571Open in IMG/M
3300021959|Ga0222716_10609265Not Available595Open in IMG/M
3300021960|Ga0222715_10262889All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes998Open in IMG/M
3300021964|Ga0222719_10539855All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes691Open in IMG/M
3300021964|Ga0222719_10690504All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes578Open in IMG/M
3300022065|Ga0212024_1017941All Organisms → Viruses → Predicted Viral1133Open in IMG/M
3300022921|Ga0255765_1208057Not Available858Open in IMG/M
3300022926|Ga0255753_1234364Not Available752Open in IMG/M
3300022926|Ga0255753_1363517All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes536Open in IMG/M
3300023178|Ga0255759_10764973Not Available524Open in IMG/M
3300024229|Ga0233402_1009350Not Available2289Open in IMG/M
3300024237|Ga0228653_1078380Not Available722Open in IMG/M
3300024296|Ga0228629_1019117All Organisms → Viruses → Predicted Viral1830Open in IMG/M
3300024316|Ga0228654_1053202Not Available619Open in IMG/M
3300025636|Ga0209136_1068910All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1112Open in IMG/M
3300025701|Ga0209771_1207919All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes562Open in IMG/M
3300025705|Ga0209374_1145862All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes671Open in IMG/M
3300025770|Ga0209362_1134300All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes886Open in IMG/M
3300026183|Ga0209932_1135613Not Available520Open in IMG/M
3300026187|Ga0209929_1091373Not Available801Open in IMG/M
3300026453|Ga0228644_1002274All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5139Open in IMG/M
3300026453|Ga0228644_1091859Not Available528Open in IMG/M
3300027197|Ga0208922_1034223All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes886Open in IMG/M
3300027751|Ga0208304_10308060All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes552Open in IMG/M
3300027751|Ga0208304_10329583All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes529Open in IMG/M
3300027753|Ga0208305_10327418All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes532Open in IMG/M
3300027757|Ga0208671_10028876Not Available2078Open in IMG/M
3300027906|Ga0209404_10188888All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1272Open in IMG/M
3300028109|Ga0247582_1196072All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes511Open in IMG/M
3300028273|Ga0228640_1087781All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes605Open in IMG/M
3300028418|Ga0228615_1102367Not Available783Open in IMG/M
3300031867|Ga0326511_10358146All Organisms → cellular organisms → Bacteria1437Open in IMG/M
3300032073|Ga0315315_10026976All Organisms → cellular organisms → Bacteria5328Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine14.02%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine13.08%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater12.15%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water8.41%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine7.48%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water7.48%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater7.48%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater6.54%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh5.61%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous4.67%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine3.74%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.93%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.93%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water0.93%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.93%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.93%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater0.93%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.93%
Marine WaterEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water0.93%
Volcanic Co2 Seep SeawaterEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater0.93%
RumenHost-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen0.93%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001472Marine viral communities from the Pacific Ocean - LP-32EnvironmentalOpen in IMG/M
3300001950Marine microbial communities from Delaware Bay, New Jersey, USA - GS011EnvironmentalOpen in IMG/M
3300002483Marine viral communities from the Pacific Ocean - ETNP_6_30EnvironmentalOpen in IMG/M
3300004461Marine viral communities from Newfoundland, Canada BC-2EnvironmentalOpen in IMG/M
3300004941Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-0.2umEnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300005837Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18EnvironmentalOpen in IMG/M
3300006024Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_BEnvironmentalOpen in IMG/M
3300006164Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNAEnvironmentalOpen in IMG/M
3300006400Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006737Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006922Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaGEnvironmentalOpen in IMG/M
3300007113Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble' site, Water-isEnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007590Estuarine microbial communities from the Columbia River estuary - metaG 1562A-02EnvironmentalOpen in IMG/M
3300007609Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MGEnvironmentalOpen in IMG/M
3300007692Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743EnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300009027Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MGEnvironmentalOpen in IMG/M
3300009058Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02EnvironmentalOpen in IMG/M
3300009172Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009441Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M MetagenomeEnvironmentalOpen in IMG/M
3300009512Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88EnvironmentalOpen in IMG/M
3300009593Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 MetagenomeEnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300012928Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaGEnvironmentalOpen in IMG/M
3300012936Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaGEnvironmentalOpen in IMG/M
3300012954Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaGEnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017721Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaGEnvironmentalOpen in IMG/M
3300017739Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10EnvironmentalOpen in IMG/M
3300017746Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017755Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09EnvironmentalOpen in IMG/M
3300017759Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28EnvironmentalOpen in IMG/M
3300017763Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20EnvironmentalOpen in IMG/M
3300017783Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10EnvironmentalOpen in IMG/M
3300017950Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017985Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019751Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MGEnvironmentalOpen in IMG/M
3300020352Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556084-ERR599144)EnvironmentalOpen in IMG/M
3300020374Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)EnvironmentalOpen in IMG/M
3300020397Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556052-ERR599075)EnvironmentalOpen in IMG/M
3300020411Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556098-ERR599130)EnvironmentalOpen in IMG/M
3300020414Marine microbial communities from Tara Oceans - TARA_B100000035 (ERX556019-ERR599028)EnvironmentalOpen in IMG/M
3300020416Marine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039)EnvironmentalOpen in IMG/M
3300020417Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)EnvironmentalOpen in IMG/M
3300020422Marine prokaryotic communities collected during Tara Oceans survey from station TARA_076 - TARA_B100000513 (ERX555999-ERR599126)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300020446Marine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989)EnvironmentalOpen in IMG/M
3300020449Marine microbial communities from Tara Oceans - TARA_B100001079 (ERX556008-ERR599020)EnvironmentalOpen in IMG/M
3300020595Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1EnvironmentalOpen in IMG/M
3300021425Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022065Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)EnvironmentalOpen in IMG/M
3300022921Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaGEnvironmentalOpen in IMG/M
3300022926Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaGEnvironmentalOpen in IMG/M
3300023178Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaGEnvironmentalOpen in IMG/M
3300024229Seawater microbial communities from Monterey Bay, California, United States - 54DEnvironmentalOpen in IMG/M
3300024237Seawater microbial communities from Monterey Bay, California, United States - 65DEnvironmentalOpen in IMG/M
3300024242Seawater microbial communities from Monterey Bay, California, United States - 91DEnvironmentalOpen in IMG/M
3300024247Seawater microbial communities from Monterey Bay, California, United States - 36D_rEnvironmentalOpen in IMG/M
3300024293Seawater microbial communities from Monterey Bay, California, United States - 63DEnvironmentalOpen in IMG/M
3300024296Seawater microbial communities from Monterey Bay, California, United States - 36DEnvironmentalOpen in IMG/M
3300024316Seawater microbial communities from Monterey Bay, California, United States - 66DEnvironmentalOpen in IMG/M
3300025636Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025701Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025705Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m (SPAdes)EnvironmentalOpen in IMG/M
3300025770Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_165m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026183Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300026187Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300026453Seawater microbial communities from Monterey Bay, California, United States - 56DEnvironmentalOpen in IMG/M
3300027197Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743 (SPAdes)EnvironmentalOpen in IMG/M
3300027751Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713 (SPAdes)EnvironmentalOpen in IMG/M
3300027753Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 (SPAdes)EnvironmentalOpen in IMG/M
3300027757Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 (SPAdes)EnvironmentalOpen in IMG/M
3300027906Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300028109Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 41R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028273Seawater microbial communities from Monterey Bay, California, United States - 51DEnvironmentalOpen in IMG/M
3300028418Seawater microbial communities from Monterey Bay, California, United States - 16DEnvironmentalOpen in IMG/M
3300031867Bovine rumen microbial communities from UC Davis, California, United States - 0_2496_0518Host-AssociatedOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI24004J15324_1010073413300001472MarineMKLENLVNQITEAAKINFAGHKFLLKVDTNEDPQKKG
GOS2227_104270533300001950MarineLGNYLLNIVHMKKLEKIVKDVISEAAKINFAGHSFLLRVDTNEDPQKKGVKVQFVPT
JGI25132J35274_106840133300002483MarineMKQLEKYIKKTLSEAAKINFAGHKFLLKVDTNEDPQKKGVKVQFLPTQFGSITPT
Ga0066223_128519013300004461MarineMKRIQELVKMVTEAAKINFAGHSFLLKVDTNEDPNKKGVKVQFIPTE
Ga0068514_104784113300004941Marine WaterMSKLENLVKSVLTEAAKINFAGHSFMLKVDTNEDPQKKGVKVQFLPTEFGSITPTE
Ga0073579_153550913300005239MarineMNKLEKLVKQVITEAAKINFAGHSFILKIDTNEDPQKKGVKVQFI
Ga0078893_1085289533300005837Marine Surface WaterMDIKNLIQTVTESAKINFAGHKFLLKVDTNEDPQKKG
Ga0066371_1012480413300006024MarineMKQLEKYIKNVLNEAAKINFANHQFLLKVDTNEDPQKKGVKVQFLPTEFG
Ga0066371_1016398513300006024MarineMNKLEQLVKETLNEAAKVNFAGHSFLLKVDTNEDPQKK
Ga0075441_1032314013300006164MarineMKQLEKLVRQTLNEAAKINFAGHKFVLKVDTNEDPQKKGVKVQFLPTEFGNITPTEQN
Ga0075503_137969723300006400AqueousMNKIEKYVKNFLSEAAKINFAGHTFILKIDTNEDPQKKGVKVQFLPTKFGSITF*
Ga0098037_111882413300006737MarineMNIENIIQQVTEAAKINFAGHSFVLKVDTNEDPQKKGVKVQFIPTEFG
Ga0070749_1043219723300006802AqueousMDIKNFINTITEAAKINFAGHKFLLKVDTNEDPKRKE*
Ga0098045_104703413300006922MarineMDKLEKAIKSILNEAAKINFAGHTFILKIDTNEDPQKKGV
Ga0101666_100712333300007113Volcanic Co2 Seep SeawaterMSKKIEQYVKKLISEAARIKFAGHTFVLKVDTNEDPQKKGVKVQFLPTQFGSITTT
Ga0099849_124058433300007539AqueousMSRLKELVNQVISEAAKINFAGHTFLLKVDTNEDPQKKG
Ga0099849_124148513300007539AqueousMNKLESLIRKTLNEAAKINFGGHSFILKLDTNEDPNKKGIKVQFLPTEFGTISKTEHNDIAN
Ga0102917_135903023300007590EstuarineMKYIDEIKKVINEAAKVNFAGHSFILKVDVNEDPQKKGIKVQFLPTQFGAISPTEQ
Ga0102945_102794343300007609Pond WaterMNKLEKLVRQTLNEAAKINFAGHQFVLKVDTNEDPNKKGVKVQFIPTQFGKI
Ga0102945_105241133300007609Pond WaterMKNIKNIIKTVLQESAKVNFAGHEFLLKVDTNEDPNKKG
Ga0102823_107798713300007692EstuarineMKNLEYLVRNVLSEAAKVKFAGHTFVLKVDTNEDPQKKGVKVQFLPTEFGSITPTEQN
Ga0102963_108777553300009001Pond WaterMNNLEKLVRQTLNEAAKINFAGHSFVLKVDTNEDPQKKGVK
Ga0102963_122728433300009001Pond WaterMKNLEKAIKSIISEAAKIKFAGHSFLLKVDTNEDPQKKGVKVQFLPTEFGSISRTQQNDIAI
Ga0102963_123772933300009001Pond WaterMKRLKEIISLVTEAAKINFADHSFLLKVDTNEDPQKKGVKVQF
Ga0102963_132388033300009001Pond WaterMKQLETYARQLIREAAKINFAGHSFVLKVDTNEDPQKKGVKIQFLPTEFGSITPTEQNDI
Ga0102957_108414533300009027Pond WaterMKRLKELVSMVTEAAKINFAGHSFLLKVDTNEDPNKK
Ga0102854_112391533300009058EstuarineMKQLEKYIRNVLSESAKINFAGHKFVLKVDTNEDPQKKGVKVQFLPTEFGTL
Ga0114995_1064051123300009172MarineMSKKIETYIKSMLTEAAKIKFAGHTFMLKVDTNEDPQKKGVKVQFLPTEFGTITPTEQND
Ga0114994_1026763613300009420MarineMEQIEKVVRSVLTEAAKINFAGHTFMLKVDTNEDPQKKGVKVQFLPTEFGKITYTEQND
Ga0114994_1027409133300009420MarineMKQLEKIVKQVLNEAAKVTFAGHTFGLKVDTNEDPQKKG
Ga0115007_1049286633300009441MarineMKQLEKIVKQVLNEAAKVTFAGHTFVLKVDTNEDPQKKGVKVQ
Ga0115003_1074363823300009512MarineMKRLQQLVSQITEAAKVNFAGHSFLLKVDTNEDPQKKGVKVQFIPTEFG
Ga0115011_1021007313300009593MarineMKRLKELVSMVTEAAKINFAGHSFLLKVDTNEDPQKKGVKVQFI
Ga0129351_107287743300010300Freshwater To Marine Saline GradientMKRLKELVSMVTEAAKINFAGHSFLLKVDTNEDPQK
Ga0163110_1002025113300012928Surface SeawaterMKQLEKYIKNVINEAAKINFANHQFLLKVDTNEDPQKKG
Ga0163110_1012029543300012928Surface SeawaterMSKKIEQYVKKLISEAARIKFAGHTFVLKVDTNEDPQKKGVKV
Ga0163110_1068468933300012928Surface SeawaterMSKLENIVKKVLNEAAKINFAGHSFILKVDTNEDP
Ga0163110_1136289413300012928Surface SeawaterMNIENIIQQVTEAAKINFAGHSFVLKVDTNEDPQKKGVKVQFIPTE
Ga0163109_1004151263300012936Surface SeawaterMKNLEKYIKQTLSEAAKINFAGQSFILKVDTNEDPQKKGVKVQFLPTQFGSITPTQQNDIAIEL
Ga0163111_10001244133300012954Surface SeawaterMKQLEKYIKNVINEAAKINFANHQFLLKVDTNEDPQKKGVKV*
Ga0163111_1236234933300012954Surface SeawaterMSLAEKYIRQVLSEAAKINFAGHQFFLKVDTNEDPNKKGVKVQFIPTEFGKLTKTEQNDIAIE
Ga0181390_114491323300017719SeawaterMSKKIEQYVKKLLSESARIKFAGHSFVLKVDTNEDPQKKGVK
Ga0181373_110403113300017721MarineMKKLETLVNQVINEAAKINFAGHSFLLKIDTNEDPTKKGVKIQFIPTEFGSI
Ga0181433_108158613300017739SeawaterMKLENLVQQITEAAKINFAGHQFILKVDTNEDPQKKGVKVQFIPTEFGS
Ga0181389_120726513300017746SeawaterMNEQLKNYIKNLITESARIKFAGHQFVLKVDTNEDPQKKGVKVQFLPTEFGS
Ga0181392_124927433300017749SeawaterMKKLEQIIEETLNEAAKVNFAGHSFLLKVDTNEDPQKK
Ga0181411_114999433300017755SeawaterMKLENLVQQITEAAKINFAGHQFILKVDTNEDPQKKGVKVQFLPTQFGSITPTQQNDIAI
Ga0181414_121011233300017759SeawaterMKLENLVQQITEAAKINFAGHQFILKVDTNEDPQKKGVKVQFIPTEFGSISAT
Ga0181410_106719533300017763SeawaterMKKLEQIIEETLNEAAKVNFAGHSFLLKVDTNEDPQKKGVKVQFIPT
Ga0181379_125900433300017783SeawaterMEMNKLEQLVEETLQEAAKVNFAGHSFLLKVDTNEDPQKKGVKVQFIPTEFGS
Ga0181607_1044238013300017950Salt MarshMKQLEKLVKEVITEAAKINFAGHSFMLKVDTNEYPQKKGVKVQFIPTQ
Ga0181576_1076117523300017985Salt MarshMKQLETYAKQLIREAAKINFAGHSFVLKVDTNEDPQKKGVKIQFLPTEFGSITPTEQNDIAI
Ga0194029_103408533300019751FreshwaterMDIKNFINTITEAAKINFAGHKFLLKVDTNEDPQKKGV
Ga0211505_106422133300020352MarineMNKLETYVKEIISEATKINFAGHTFLLKTDTNEDPTKKGVKVQFVPTE
Ga0211505_114048713300020352MarineMNKLKEAIKSILNESAKINFAGHTFVLKIDTNEDPQKKGVKIQFLPT
Ga0211477_1027146733300020374MarineMNKLENLVKQVISEATKINFAGHSFLLKTDTNEDPQKKGVKVQFIPTEF
Ga0211583_1022805933300020397MarineMSKLENIVKKVLNEAAKINFAGHSFILKVDTNEDPQK
Ga0211587_1021659233300020411MarineMSLAEKYIRQVISEAAKINFAGHQFFLKIDTNEDPNKKGVKVQFIPTEFGKLTRT
Ga0211523_1020095513300020414MarineMKKLETLVKQVINEAAKINFAGHSFLLKIDTNEDPTKKGVKVQFIPTEFGSISATEQNDI
Ga0211644_1008052913300020416MarineMSLAEKYIRQVISEAAKINFAGHQFFLKIDTNEDPNKKGVKVQFIPTEFGKLTRTEQN
Ga0211644_1022239713300020416MarineMSKLENIVKKVLNEAAKINFAGHSFILKVDTNEDPQKKGVKVQFLPT
Ga0211528_1010524313300020417MarineMSKLENIVKKVLNEAAKINFAGHSFILKVDTNEDPQKKGVKVQFLPTEFGSITATEQNDI
Ga0211702_1023274013300020422MarineMSLAEKYIRQVISEAAKINFAGHQFFLKIDTNEDPNKKGVKVQFIPTEFGKLTR
Ga0211576_1020968833300020438MarineMNKLESIVRQTLSEAAKIKFAGHSFILKVDTNEDPQKKGVKVQFLPTEFGSITATEQND
Ga0211574_1051074913300020446MarineMKKLENLVNQVISEATKINFAGHSFLLKVDTNEDPQKKGVKVQFIPTEFGDLTTTQKNDI
Ga0211642_1041856813300020449MarineMSKLENIVKEVLNEAAKINFAGHSFILKVDTNEDPQKKGVKVQFLPTE
Ga0206126_1012675533300020595SeawaterMDIKNLIQNITEAAKVNFAGHKFLLKVDTNEDPQKKGVKVQF
Ga0213866_1055429313300021425SeawaterMENLKSLIKQVISEATKVNFAGHKFVLKVDVNEDPNT
Ga0222717_1040931213300021957Estuarine WaterMNKLESLIRKTLNEAAKINFGGHSFILKLDTNEDPNKKGIKVQFLPTEFGTI
Ga0222717_1073617033300021957Estuarine WaterMKTIENIVKSVISEAAKIKFAGHSFMLKVDTNEDPQKKGVKVQFLPTEFGNMNSTEQNDIAIELET
Ga0222718_1052059413300021958Estuarine WaterMKRLKELVSMVTEAAKINFAGHSFLLRVDTNEDPQKKGVKVQFIPTEFGS
Ga0222716_1016493113300021959Estuarine WaterMNIKNLIQNVTEAAKVNFAGHKFLLKVDTNEDPQKK
Ga0222716_1060926533300021959Estuarine WaterMKRIQELISMVTEAAKINFAGHSFLLKIDTNEDPQKKGVK
Ga0222715_1026288913300021960Estuarine WaterMNKLESIVRQTLSEAAKIKFAGHSFILKVDTNEDPQKKGVKVQFLPTEFGSITATEQNDIAIELETRLE
Ga0222719_1053985533300021964Estuarine WaterMKRIQELIKMVTETAKINFAGHSFLLKVDTNEDPQKKGVKVQFI
Ga0222719_1069050413300021964Estuarine WaterMKTLEKIVRETLSEAAKIKFAGNTFMLKVDTNEDPNKKGVKVQFIPMEFGKITP
Ga0212024_101794113300022065AqueousMKKLEKIVKDVISEAAKINFAGHSFLLRVDTNEDPQK
Ga0255765_120805733300022921Salt MarshMKRLKEIINIVTEAAKINFAGHSFLLKVDTNEDPQKKGVKVQF
Ga0255753_123436413300022926Salt MarshMKRLKELVRMVTEAAKINFAGHSFLLRVDTNEDPQKKGVK
Ga0255753_136351713300022926Salt MarshMNKIEKYVKNFLSEGAKINFAGHTFILKIDTNEDPQKKGVKVQFLPTKFGSITSTE
Ga0255759_1076497313300023178Salt MarshMNKLEQYVKTFISEAAKINFAGHTFVLKVDTNEDPQKK
Ga0233402_100935053300024229SeawaterMKNLEKVVKSVISEAAKIKFAGHSFLLKVDTNEDPQKKGVKVQ
Ga0228653_107838033300024237SeawaterMKKLEEAIKSILNEAAKINFAGHTFVLKIDTNEDPQKKGVKVQFL
Ga0228673_100355353300024242SeawaterMSKLENLIKEVLSEAAKVTFAGHKFMLKVDVNEDPQKKG
Ga0228675_109845813300024247SeawaterMNIKNLIQNVTEAAKVNFAGHKFLLKVDTNEDPQKKGV
Ga0228651_108428513300024293SeawaterMNIKNLIQNVTEAAKVNFAGHKFLLKVDTNEDPQKKGVK
Ga0228629_101911713300024296SeawaterMNKLKEAIKSILNESAKINFAGHTFVLKIDTNEDPQKKGVKIQFLPTKFGNITSTEQNDIAIE
Ga0228654_105320233300024316SeawaterMNKLESLIRKTLNEAAKINFGGHSFILKLDTNEDPNKKGIKVQFLPTEFGTISKT
Ga0209136_106891033300025636MarineMDKIEKYVRSLINEAAKIKFAGHTFMLKIDTNEDPQKKGVKVQFLPTKFGSITTT
Ga0209771_120791933300025701MarineMKKMKKLIHQLITEAAKINFAGHTFVLKIDTNEDPQKKGVKVQFLP
Ga0209374_114586213300025705MarineMKTIENIVKSVISEAAKIKFAGHSFMLKVDTNEDPQKKGVKVQFLPTEFG
Ga0209362_113430013300025770MarineMNNIEYLIRNTLSEAAKIKFAGHSFILKVDTNEDPQKKGVKVQF
Ga0209932_113561313300026183Pond WaterMNKIEKYVKNFLSEAAKINFAGHTFILKIDTNEDPQKK
Ga0209929_109137333300026187Pond WaterLGNYLLNIVHMKKLEKIVKNVITEAAKINFAGHSFLLRVDTNEDPQK
Ga0228644_100227413300026453SeawaterMNKLKEAIKSILNESAKINFAGHTFVLKIDTNEDPQK
Ga0228644_109185913300026453SeawaterMNKLESIVRQTLSEAAKIKFAGHSFILKVDTNEDPQKKGVK
Ga0208922_103422313300027197EstuarineMKNLEYLVRNVLSEAAKVKFAGHTFVLKVDTNEDPQKKGVKVQFLPTEFGSITPTEQNDI
Ga0208304_1030806013300027751EstuarineMNKLETYVKEIISEATKINFAGHSFLLKTDTNEDPTKKGVKVQFVPTEFGAL
Ga0208304_1032958333300027751EstuarineMNKLESIVRQTLSEAAKIKFAGHSFILKVDTNEDPQKKGVKVQF
Ga0208305_1032741813300027753EstuarineMNKLETYVKEIISEATKINFAGHSFLLKTDTNEDPTKKGVKVQFVP
Ga0208671_1002887643300027757EstuarineMSTKIEELVKELISESAKINFAGHKFLLKVDVNEDPQKKGVKIQFLPTQFGGI
Ga0209404_1018888833300027906MarineMSLAEKYIKQVISEAAKINFAGHQFFLKIDTNEDPNKKGVK
Ga0247582_119607213300028109SeawaterMNKLKEAIKSILNESAKINFAGHTFVLKIDTNEDPQKKGVKIQFLPTKF
Ga0228640_108778113300028273SeawaterMKKLEQVVDKLLSEAAKINFAGHSFVLKVDTNEDPQKKGVKVQFLPTEFGSIT
Ga0228615_110236733300028418SeawaterMNKLETYVKEIISEATKINFAGHTFLLKTDTNEDPTKKGV
Ga0326511_1035814613300031867RumenMKNNILEESIREVLTEATKIHFGKYNFILKVDTNEDPQKKGVKVQ
Ga0315315_1002697693300032073SeawaterMKKIEKYIKSLLSEAAKINFAGHTFVLKIDTNEDPQKKGVKVQF


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