Metagenome Family F092697

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092697
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	80 residues
Representative Sequence	MDKKTNFPDLEILPPHNHFKHFLGWLISKPRMIIEDYVRKNFPDKNLELKILKLNLELKEYELTLLKKEIQELRKYSNLL
Number of Associated Samples	70
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	34.58 %
% of genes near scaffold ends (potentially truncated)	32.71 %
% of genes from short scaffolds (< 2000 bps)	85.98 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.065 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (46.729 % of family members)
Environment Ontology (ENVO)	Unclassified (79.439 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (97.196 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.11% β-sheet: 0.00% Coil/Unstructured: 38.89%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF02646	RmuC	38.32
PF00929	RNase_T	14.95
PF08411	Exonuc_X-T_C	7.48
PF00579	tRNA-synt_1b	0.93
PF00275	EPSP_synthase	0.93
PF00290	Trp_syntA	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1322	DNA anti-recombination protein (rearrangement mutator) RmuC	Replication, recombination and repair [L]	38.32
COG2925	Exonuclease I (degrades ssDNA)	Replication, recombination and repair [L]	7.48
COG0159	Tryptophan synthase alpha chain	Amino acid transport and metabolism [E]	0.93
COG0162	Tyrosyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.93
COG0180	Tryptophanyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.07 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.07 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.07 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	91.59 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	90.65 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Pelagibacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	85.05 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	66.36 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Candidatus Pelagibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	63.55 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Candidatus Pelagibacter giovannonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	61.68 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Candidatus Pelagibacter giovannonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	61.68 %
unclassified Flavobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Candidatus Pelagibacter giovannonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	61.68 %
Flavobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	0.93 %
Unclassified	root	N/A	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001354\|JGI20155J14468_10055765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1633	Open in IMG/M
3300001943\|GOS2226_1005185	All Organisms → cellular organisms → Bacteria	1453	Open in IMG/M
3300001974\|GOS2246_10042222	All Organisms → cellular organisms → Bacteria	1201	Open in IMG/M
3300005430\|Ga0066849_10033518	All Organisms → cellular organisms → Bacteria	2082	Open in IMG/M
3300005430\|Ga0066849_10330311	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300005432\|Ga0066845_10341603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	579	Open in IMG/M
3300005432\|Ga0066845_10365984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	558	Open in IMG/M
3300005522\|Ga0066861_10136081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	851	Open in IMG/M
3300005523\|Ga0066865_10091083	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300005523\|Ga0066865_10413910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	513	Open in IMG/M
3300005523\|Ga0066865_10432280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	501	Open in IMG/M
3300005837\|Ga0078893_10211975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	612	Open in IMG/M
3300006166\|Ga0066836_10440270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	787	Open in IMG/M
3300009077\|Ga0115552_1184934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	860	Open in IMG/M
3300009550\|Ga0115013_10064280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	2035	Open in IMG/M
3300009593\|Ga0115011_11293650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	634	Open in IMG/M
3300009790\|Ga0115012_10987061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	695	Open in IMG/M
3300009790\|Ga0115012_11700254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	550	Open in IMG/M
3300012919\|Ga0160422_10923819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	563	Open in IMG/M
3300012928\|Ga0163110_10188370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1455	Open in IMG/M
3300012928\|Ga0163110_10218569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	1359	Open in IMG/M
3300012928\|Ga0163110_10229337	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300012928\|Ga0163110_10234871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	1315	Open in IMG/M
3300012936\|Ga0163109_10301169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	1174	Open in IMG/M
3300012953\|Ga0163179_11714344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	571	Open in IMG/M
3300012954\|Ga0163111_10114756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2232	Open in IMG/M
3300012954\|Ga0163111_10417968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1220	Open in IMG/M
3300012954\|Ga0163111_11118989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	766	Open in IMG/M
3300012954\|Ga0163111_11138313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	759	Open in IMG/M
3300012954\|Ga0163111_11369442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	696	Open in IMG/M
3300012954\|Ga0163111_11677373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	633	Open in IMG/M
3300012954\|Ga0163111_11787702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	615	Open in IMG/M
3300012954\|Ga0163111_11974590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	587	Open in IMG/M
3300012954\|Ga0163111_12122142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	567	Open in IMG/M
3300017710\|Ga0181403_1060857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	787	Open in IMG/M
3300017717\|Ga0181404_1174335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	515	Open in IMG/M
3300017732\|Ga0181415_1086483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	707	Open in IMG/M
3300017738\|Ga0181428_1124644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	604	Open in IMG/M
3300017739\|Ga0181433_1068963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	882	Open in IMG/M
3300017759\|Ga0181414_1059535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	1018	Open in IMG/M
3300017759\|Ga0181414_1185718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	539	Open in IMG/M
3300017762\|Ga0181422_1089661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	966	Open in IMG/M
3300017762\|Ga0181422_1217847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	571	Open in IMG/M
3300017763\|Ga0181410_1096534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	860	Open in IMG/M
3300017765\|Ga0181413_1107646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	848	Open in IMG/M
3300017767\|Ga0181406_1071177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	1063	Open in IMG/M
3300017771\|Ga0181425_1086346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1008	Open in IMG/M
3300017781\|Ga0181423_1112445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	1062	Open in IMG/M
3300017781\|Ga0181423_1384587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	508	Open in IMG/M
3300017782\|Ga0181380_1190940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	689	Open in IMG/M
3300017786\|Ga0181424_10116356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	1152	Open in IMG/M
3300017786\|Ga0181424_10368053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	589	Open in IMG/M
3300020374\|Ga0211477_10129158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	913	Open in IMG/M
3300020379\|Ga0211652_10046491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	1301	Open in IMG/M
3300020379\|Ga0211652_10062996	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300020379\|Ga0211652_10188611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	629	Open in IMG/M
3300020380\|Ga0211498_10054180	All Organisms → cellular organisms → Bacteria → Proteobacteria	1495	Open in IMG/M
3300020381\|Ga0211476_10130962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	920	Open in IMG/M
3300020388\|Ga0211678_10082268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	1448	Open in IMG/M
3300020391\|Ga0211675_10073746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	1598	Open in IMG/M
3300020391\|Ga0211675_10224459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	813	Open in IMG/M
3300020391\|Ga0211675_10311523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	664	Open in IMG/M
3300020392\|Ga0211666_10231155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	704	Open in IMG/M
3300020393\|Ga0211618_10027548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2362	Open in IMG/M
3300020400\|Ga0211636_10133838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	987	Open in IMG/M
3300020401\|Ga0211617_10449205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	531	Open in IMG/M
3300020401\|Ga0211617_10469675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	517	Open in IMG/M
3300020404\|Ga0211659_10159465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	1022	Open in IMG/M
3300020404\|Ga0211659_10268669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	754	Open in IMG/M
3300020404\|Ga0211659_10403455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	593	Open in IMG/M
3300020406\|Ga0211668_10089080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1306	Open in IMG/M
3300020413\|Ga0211516_10122322	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1230	Open in IMG/M
3300020417\|Ga0211528_10212968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	739	Open in IMG/M
3300020417\|Ga0211528_10396617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	506	Open in IMG/M
3300020421\|Ga0211653_10017233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	3454	Open in IMG/M
3300020431\|Ga0211554_10388396	Not Available	647	Open in IMG/M
3300020431\|Ga0211554_10544788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	526	Open in IMG/M
3300020433\|Ga0211565_10023002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	2626	Open in IMG/M
3300020438\|Ga0211576_10136753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	1333	Open in IMG/M
3300020440\|Ga0211518_10009289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	6834	Open in IMG/M
3300020445\|Ga0211564_10002898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	8596	Open in IMG/M
3300020448\|Ga0211638_10112011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1222	Open in IMG/M
3300020451\|Ga0211473_10381055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	722	Open in IMG/M
3300020451\|Ga0211473_10682762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	515	Open in IMG/M
3300020452\|Ga0211545_10170339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	1010	Open in IMG/M
3300020454\|Ga0211548_10248713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	865	Open in IMG/M
3300020455\|Ga0211664_10482006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	568	Open in IMG/M
3300020457\|Ga0211643_10505287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	594	Open in IMG/M
3300020462\|Ga0211546_10546880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	584	Open in IMG/M
3300020463\|Ga0211676_10011045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7707	Open in IMG/M
3300020463\|Ga0211676_10070761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	2388	Open in IMG/M
3300020463\|Ga0211676_10231991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	1094	Open in IMG/M
3300020463\|Ga0211676_10288406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	942	Open in IMG/M
3300020463\|Ga0211676_10445760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	697	Open in IMG/M
3300020463\|Ga0211676_10621012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	550	Open in IMG/M
3300020465\|Ga0211640_10527229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	642	Open in IMG/M
3300020468\|Ga0211475_10047216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2354	Open in IMG/M
3300020468\|Ga0211475_10131515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	1287	Open in IMG/M
3300020469\|Ga0211577_10064068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	2631	Open in IMG/M
3300020470\|Ga0211543_10566896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	535	Open in IMG/M
3300020472\|Ga0211579_10684259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	572	Open in IMG/M
3300020473\|Ga0211625_10000680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	39624	Open in IMG/M
3300025830\|Ga0209832_1062415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	1285	Open in IMG/M
3300026257\|Ga0208407_1088144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	993	Open in IMG/M
3300032011\|Ga0315316_10082775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	2604	Open in IMG/M
3300032073\|Ga0315315_10001587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	20882	Open in IMG/M
3300032073\|Ga0315315_10410006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1260	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified	46.73%
Oceanic	Environmental → Aquatic → Marine → Oceanic	28.04%
Strait	Environmental → Aquatic → Marine → Strait	16.82%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	4.67%
Pelagic	Environmental → Aquatic → Marine → Pelagic	1.87%
Coastal	Environmental → Aquatic → Marine → Coastal	0.93%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	46.73%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	16.82%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	14.02%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	14.02%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	4.67%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	46.73%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	16.82%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	13.08%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	13.08%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	2.80%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	1.87%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	1.87%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	0.93%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	0.93%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	0.93%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001354	Pelagic Microbial community sample from North Sea - COGITO 998_met_05	Environmental	Open in IMG/M
3300001943	Marine microbial communities from Cape May, New Jersey, USA - GS010	Environmental	Open in IMG/M
3300001974	Marine microbial communities from Upwelling, Fernandina Island, Equador - GS031	Environmental	Open in IMG/M
3300005430	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69	Environmental	Open in IMG/M
3300005432	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78	Environmental	Open in IMG/M
3300005522	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV257	Environmental	Open in IMG/M
3300005523	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265	Environmental	Open in IMG/M
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental	Open in IMG/M
3300006166	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91	Environmental	Open in IMG/M
3300009077	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328	Environmental	Open in IMG/M
3300009550	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome	Environmental	Open in IMG/M
3300009593	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome	Environmental	Open in IMG/M
3300009790	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome	Environmental	Open in IMG/M
3300012919	Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG	Environmental	Open in IMG/M
3300012928	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG	Environmental	Open in IMG/M
3300012936	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG	Environmental	Open in IMG/M
3300012953	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome	Environmental	Open in IMG/M
3300012954	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG	Environmental	Open in IMG/M
3300017710	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28	Environmental	Open in IMG/M
3300017717	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25	Environmental	Open in IMG/M
3300017732	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11	Environmental	Open in IMG/M
3300017738	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12	Environmental	Open in IMG/M
3300017739	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10	Environmental	Open in IMG/M
3300017759	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28	Environmental	Open in IMG/M
3300017762	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18	Environmental	Open in IMG/M
3300017763	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20	Environmental	Open in IMG/M
3300017765	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28	Environmental	Open in IMG/M
3300017767	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20	Environmental	Open in IMG/M
3300017771	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13	Environmental	Open in IMG/M
3300017781	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14	Environmental	Open in IMG/M
3300017782	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19	Environmental	Open in IMG/M
3300017786	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18	Environmental	Open in IMG/M
3300020374	Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)	Environmental	Open in IMG/M
3300020379	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)	Environmental	Open in IMG/M
3300020380	Marine microbial communities from Tara Oceans - TARA_B000000565 (ERX555945-ERR599058)	Environmental	Open in IMG/M
3300020381	Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291769-ERR318620)	Environmental	Open in IMG/M
3300020388	Marine microbial communities from Tara Oceans - TARA_B100001063 (ERX555965-ERR599064)	Environmental	Open in IMG/M
3300020391	Marine microbial communities from Tara Oceans - TARA_B100000989 (ERX556130-ERR598967)	Environmental	Open in IMG/M
3300020392	Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163)	Environmental	Open in IMG/M
3300020393	Marine microbial communities from Tara Oceans - TARA_B100000161 (ERX556105-ERR599054)	Environmental	Open in IMG/M
3300020400	Marine microbial communities from Tara Oceans - TARA_B100001115 (ERX555947-ERR598992)	Environmental	Open in IMG/M
3300020401	Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)	Environmental	Open in IMG/M
3300020404	Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)	Environmental	Open in IMG/M
3300020406	Marine microbial communities from Tara Oceans - TARA_B100000886 (ERX555926-ERR599024)	Environmental	Open in IMG/M
3300020413	Marine microbial communities from Tara Oceans - TARA_S200000501 (ERX555962-ERR599092)	Environmental	Open in IMG/M
3300020417	Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)	Environmental	Open in IMG/M
3300020421	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)	Environmental	Open in IMG/M
3300020431	Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)	Environmental	Open in IMG/M
3300020433	Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)	Environmental	Open in IMG/M
3300020438	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)	Environmental	Open in IMG/M
3300020440	Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)	Environmental	Open in IMG/M
3300020445	Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)	Environmental	Open in IMG/M
3300020448	Marine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)	Environmental	Open in IMG/M
3300020451	Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)	Environmental	Open in IMG/M
3300020452	Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)	Environmental	Open in IMG/M
3300020454	Marine microbial communities from Tara Oceans - TARA_B100001769 (ERX556037-ERR599170)	Environmental	Open in IMG/M
3300020455	Marine microbial communities from Tara Oceans - TARA_B100000965 (ERX555917-ERR599081)	Environmental	Open in IMG/M
3300020457	Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)	Environmental	Open in IMG/M
3300020462	Marine microbial communities from Tara Oceans - TARA_B100001559 (ERX556040-ERR598986)	Environmental	Open in IMG/M
3300020463	Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)	Environmental	Open in IMG/M
3300020465	Marine microbial communities from Tara Oceans - TARA_B100000579 (ERX556060-ERR598961)	Environmental	Open in IMG/M
3300020468	Marine microbial communities from Tara Oceans - TARA_A100000164 (ERX555914-ERR598993)	Environmental	Open in IMG/M
3300020469	Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)	Environmental	Open in IMG/M
3300020470	Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)	Environmental	Open in IMG/M
3300020472	Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)	Environmental	Open in IMG/M
3300020473	Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)	Environmental	Open in IMG/M
3300025830	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407 (SPAdes)	Environmental	Open in IMG/M
3300026257	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69 (SPAdes)	Environmental	Open in IMG/M
3300032011	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416	Environmental	Open in IMG/M
3300032073	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20155J14468_100557652	3300001354	Pelagic Marine	MMMRIKTMDKKTNFPDLEILPPHNHFKHFLDWLISKPRNIIEDYFRKNFPDKNLELELLKMNLELKEYELTLLKKEIQEIRKYSNLL*
GOS2226_10051851	3300001943	Marine	MDKKTNFPDLERLPPHNHFKHFLDWVITKPRMIIENYIIKNFTSKNLELETLKLNLELKEYELTVLKKEIQELRKYPNFL*
GOS2246_100422222	3300001974	Marine	MKMMRIKTMDKKTNFPDLEILPPHNHFKHFLNWLRNKPRMIIENYVRKNFTDKNLELEILKFNLKLKEYELTVLKKEIQDLRNNQ*
Ga0066849_100335182	3300005430	Marine	MNKKTNFPDLEILPPHNHFKHFLDWLVNKPHWIIKDYIRKNFLDKNIELEVLKMNLEIKEIELTLLKNEINILKKSKQKV*
Ga0066849_103303112	3300005430	Marine	MDKKTNFPDLEILPPHNHFKHFLNWLINKPRMIIENYVRKNFPDKNLELEILKLNLELKKYELTVLKKEIQELRNNQ*
Ga0066845_103416032	3300005432	Marine	MDKKTNFPDLEILPPHNHLKHFLDWLINKPRMIIENYVRKNFTDKNLELEFLKLNLELKEYELTLLKKEIQELKRYSNLL*
Ga0066845_103659842	3300005432	Marine	MDKKTNFPDLEILPPHNHFKHFFDWLISKPRMIIEDYVRKNFPDKNLELEILKLNLELKEHELTLLKKEIQELRKYSSFL*
Ga0066861_101360812	3300005522	Marine	MDKKTNFPDLEILPPHNHFKHFLDWMISKPRMIIKDYVRKNFPDENLELENLKLDLQLKEYELTLLKKEIQELRKYSNLL*
Ga0066865_100910832	3300005523	Marine	IKIMDKKTNFPDLEKLPPHNHLKHFFEWLISKPRMIIEDYVRKNFTNKHLELELLKLDLELKEYELKLLKKEIQELRKYSYFL*
Ga0066865_104139101	3300005523	Marine	MDKKTNFPDLERLPPHNHLKHFLDWLINKPRIKLKDYIKKNLINENLELEVLKLDLQLKEYELTLLKKEIQELRKYS
Ga0066865_104322801	3300005523	Marine	MDKKTNFPDLEILPPHNHFKHFLDWMISKPRMIIKDYVRKNFPDENLELENLKLDLQLKEYELTLLKKE
Ga0078893_102119752	3300005837	Marine Surface Water	MDKKTNFPELERLPSHNHFKHFLDWLINKPRIIIENYVRKNFLNENLELEVLKLNLELKEYELTVLKKEIQELRNYSNLL*
Ga0066836_104402701	3300006166	Marine	PHNHFKHFLNWLWNKPRWILENFFKENFLDKNIELEVLKMNLEIKEIELTLLKNEINILKKSKQKV*
Ga0115552_11849341	3300009077	Pelagic Marine	MRIKTMDKKTNFPDLEILPPHNHFKHFLDWLISKPRNIIEDYFRKNFPDKNLELELLKMNLELKEYELTLLKKEIQEIRKYSNLL*
Ga0115013_100642802	3300009550	Marine	MDKKTNFPDLERLPPHNHFKHFLNWLINKPKMIFKDYIIKNFPDKNLELDILKLNLELKEYELTLLKKEMQEIRKYSNFL*
Ga0115011_112936502	3300009593	Marine	MRIKTMDKKTNFPDLEILPPHNHLKHFLDWLINKPRMIIEDYVRKNFPDKNLELEILKLNLELKKYELTVLKKEIQELRNNN*
Ga0115012_109870612	3300009790	Marine	MRIKIMDKKTNFPDLEILPPHNHFKHFLNWLISKPRIIIEDYVRKNFSNKNLEQEVLKLNLELKEYELTLLKKEIQELRKYSNFL*
Ga0115012_117002542	3300009790	Marine	MDKKTNFPDLERLPPHNHFKHFLNWLTNKPKMIFKDYIIKNFPDKNLELDILKLNLELKEYELTLLKKEMQEIRKYSNFL*
Ga0160422_109238191	3300012919	Seawater	MDKKTNFPDLERLPPHNHLKHFLEWLINKPKMIIEDYVKKNFPDKNLELELLKLDLELKEYELKLLKKEMKEIRKKSYFF*
Ga0163110_101883702	3300012928	Surface Seawater	MRIKIMDKKTNFPDLERLPPHNHLKHFLDWLINKPRIKLKDYIRENFTNKNLELEVLKLDLQLKEYELTLLKKEIQELRKYSKFL*
Ga0163110_102185692	3300012928	Surface Seawater	MRIKTMDKKTNFPDLEILPPHNHFKHFLNWLISKPRVIIEDYVRKNFSNENLELEVLKLNLELKEYELTVLKKEIQDLRNYSNLL*
Ga0163110_102293372	3300012928	Surface Seawater	MRTKTMDKKTNFPDLERLPPHNHFKHFLNWLINKPRMIIKDSIIKNFPDKNLELEILKLNLELKEYELTLLKKEMQEIRKYSNFL*
Ga0163110_102348712	3300012928	Surface Seawater	MDKKTNFPDLERLPPHNHLKHFLEWLINKPKMMIENYVKKNFPNKNLELEILKQKLELKEFELALLKKEIQELRKYSNLLLK*
Ga0163109_103011692	3300012936	Surface Seawater	MRIKTMDKKTNFPDLEILPPHNHFKHFFDWLISKPRMIIEDYVRKNFPDKNLELEILKLNLELKEHELTLLKKEIQELRKYSNFL*
Ga0163179_117143441	3300012953	Seawater	MDKKTNFPDLERLPPHNHFKHFLNWLINKPKMIFKDYIIKNFPDKNLELEILKLNLELKEYELTLL
Ga0163111_101147561	3300012954	Surface Seawater	MDKKTNFPDLERLPPHNHFKHFLDWLINKPRMIIENYVRKNFTDKNLELEILKLNLELKEYELILLKKEIQELRKY*
Ga0163111_104179682	3300012954	Surface Seawater	LERLPPHNHFKHFLNWLINKPKMIIKDYIIKNFLDKNLELEILKLNLELKEYELTLLKKEMQEIRKYSNFL*
Ga0163111_111189892	3300012954	Surface Seawater	MDKKTNFPDLEILPPHNHFKHFLNWLRNKPRMIIENYVRKNFTNKNLEIEILKFNLKLKEYELTVLKNEIQDLRNNQ*
Ga0163111_111383132	3300012954	Surface Seawater	MRIKTMSKKTNFPDLERLPPHNHIKHFLDWLINNPRMIIETYIIKNFPSKNLELETLKLNLELKEYELIVLKKEIQELRNYSNLL*
Ga0163111_113694422	3300012954	Surface Seawater	MDKKTNFPDLERLPPHNHFKHFLNWLINKPKMIFKDYIIKNFPDKNLELEILKLNLELKEYELTLLKKEMQEIRKYSNFL*
Ga0163111_116773732	3300012954	Surface Seawater	MRIKTMDKKTNFPDLEILPTHNHFKHFLDWMISKPRMIIKDYVRKNFPDENLELENLKLDLQLKEYELTLLKKEIQEL
Ga0163111_117877021	3300012954	Surface Seawater	MDKKTNFPDLEILPPHNHLKHFLDWMISKPRMIIEDYVRKNFPDKNLELELLKLNLELKEYELTLLKKEIQELRKYSNLL*
Ga0163111_119745902	3300012954	Surface Seawater	EILPPHNHFKHFLNWLISKPRTIIEDYIRKNFPDKNLELELLKLNLELKEYELTLLKKEIQELRKYSNLL*
Ga0163111_121221422	3300012954	Surface Seawater	MRIKIMDKKTNFPDLERLPSHNHFKHFFDWLISKPRMIIEDYVRKNFPDKNFELEILKLNLELKEYELTVLKKEIQELRSNQ*
Ga0181403_10608572	3300017710	Seawater	MDKKTNFPDLEISPKHNHFKHFLDWLINKPRIVIENYVRKNFSNENLELEVLKLNLELKEYELTVLKKEIQELRNYSNLL
Ga0181404_11743351	3300017717	Seawater	MKMMRIKTMDKKTNFPDLEILPPHNHFKHFLNWLINKPRMIIENYARKNFPDKNLELEILKLNLELKEYELTLLKKEIQELRK
Ga0181415_10864832	3300017732	Seawater	MDKKTNFPDLEILPPHNHFKHFLDWLINKPRIVIENYVRKNFSNENLELEILKLNLELKEYELTVLKKEIQEFKNNQ
Ga0181428_11246442	3300017738	Seawater	MKIKTMDKKTNFPDLKILPPHNHFKHFFDWLISKPRIIIENYVRKNFPDKNLELELLKLNLKLKEYELTLLKKEIQELRKYSNFS
Ga0181433_10689631	3300017739	Seawater	IMDKKTNFPDLERLPPHNHFKHFFVSLIGKPRMIIEDYLRKNFPNKNLELEILKLNLELKEYELTVLKKEIQELRKYSNFS
Ga0181414_10595352	3300017759	Seawater	MDKKTNFPDLEILPPHNHFKHFLDWLINKPRIVIENYVRKNFSNENLELEILKLNLELKEYELTVLKKEIQELRKYSNFS
Ga0181414_11857181	3300017759	Seawater	MDKKTNFPDLERLPPHNHFKHFLDWVITKPRMIIENYIIKNFPSKNLELETLKLNLELKEYELTVLKKEIQELRNYSN
Ga0181422_10896611	3300017762	Seawater	MKMMRIKTMDKKTNFPDLEILPPHNHFKHFLNWLINKPRMIIENYVRKNFPDKNLELEILKLNLELKEYELTVLKKEIQELRNYSNLL
Ga0181422_12178472	3300017762	Seawater	FPDLEISPKHNHFKHFLDWLINKPRMIIRDYVRKNFSNENLELEVLKLNLELKEYELTVLKKEIQELRNYSNLL
Ga0181410_10965342	3300017763	Seawater	MDKKTNFPDLERLPPHNHFKHFLDWVITKPRMIIENYIIKNFPSKNLELETLKLNLELKEYELTVLKKEIQELRKYPNFL
Ga0181413_11076462	3300017765	Seawater	MDKKTNFPDLEILPPHNHFKHFLNWLINKPRMIIENYVRKNFPDKNLELELLKMNLELKEYELTLLKKEIQEI
Ga0181406_10711772	3300017767	Seawater	MDKKTNFPDLERLPPHNHFKHFLDWVITKPRMIIENYIIKNFTSKNLELETLKLNLELKEYELTVLKKEIQELRNYSNLL
Ga0181425_10863462	3300017771	Seawater	MDKKTNFPDLEILPPHNHFKHFLNWLINKPRMIIENYVRKNFPDKNLELEILKLNLELKEYELTVLKKEIQELRNNQ
Ga0181423_11124451	3300017781	Seawater	MNKKTNFPDLERLPPHNHIKHFLVWLINKPRIIIENYIIKNFTSKNLELETLKLNLELKEYELTVLKKEIQEVRKYSNFS
Ga0181423_13845871	3300017781	Seawater	NFPDLEILPPHNHFKHFLDWLISKPRMIIEDYVRKNFPDKNLELELLKLNLKLKEYELTLLKKEIQELRKYSNL
Ga0181380_11909401	3300017782	Seawater	RMIIMKMMRIKTMDKKTNFPDLKILPPHNHFKHFFDWLISKPRIIIENYVRKNFPDKNLELEILKLNLELKEYELTVLKKEIQELRNNQ
Ga0181424_101163561	3300017786	Seawater	MDKKTNFPDLERLPPHNHFKHFFVSLISKPRMMIEDYLRKNFPDKNLELEILKLNLELKEYELTVLKKEIQELRKYSNFS
Ga0181424_103680532	3300017786	Seawater	MDKKTNFPDLERLPPHNHFKHFFVSLIGKPRMIIEDYVRKNFTDRNLELEILKLNLELKEYELTVLKKEIQELRKYSNFS
Ga0211477_101291581	3300020374	Marine	MMKIKTMDKKTNFPDLEILPPHNHFKHFLNWLISKPRIIIEDYVKKNFPDKDLELEILKLNLELKEYELTLLKKEIQELRKYSNF
Ga0211652_100464911	3300020379	Marine	MDKKTNFPDLERLPPHNHFKHFLDWLINKPRMIIENYVRKNFTDKNLELEILKLNLELKEYELILLKK
Ga0211652_100629962	3300020379	Marine	MDKKTNFPDLERLPPHNHFKHFLDWLINKPRIVIEDYVRKNFSNENLEFEVLKLNLELKEYELTALKKEIQELRNYSNLL
Ga0211652_101886111	3300020379	Marine	RMVMRIKTMDKKTNFPDLEILPPHNHFKHFLDWLISKPRMIIEDYVRKNFPDKNLELELLKLNLELKEYELTLLKKEIQDLRKYSNLL
Ga0211498_100541802	3300020380	Marine	MDKKTNFPDLERLPPHNHLKHFLEWLINKPKMIIEDYVKKNFPDKNLELELLKLDLELKEYELKLLKKEMKEIRKKSYFF
Ga0211476_101309621	3300020381	Marine	KTMDKKTNFPDLEILPPHNHFKHFLNWLISKPRIIIEDYVKKNFPDKDLELEILKLNLELKEYELTLLKKEIQELRKYSNFS
Ga0211678_100822682	3300020388	Marine	MMEIKIMDKKTNFPDLERLPPHNHFKHFFVSLISKPRMIIEDYLRKNFPNKNLELEILKLNLELKEYELTVLKKEIQELRKYFNFS
Ga0211675_100737463	3300020391	Marine	MDKKTNFPDLEILSPHNHFKHFLDWLISKPRIIIEDYVRKNFPDKNLELELLKLNLELKEYELTLLKKEIQELRKYSNLL
Ga0211675_102244592	3300020391	Marine	MDKKTNFPDLERLPPHNHLKHFLEWLINKPKMMIENYVKKNFPNKNLELEILKQKLELKEFELALLKKEIQELRKYSNLLLK
Ga0211675_103115232	3300020391	Marine	MNKKTNFPDLEILPPHNHLKHFLDWLINKPRMIIENYVRKKFPDKNSELEILKLNLELRDYELKLLKIEIQELRKHSNLL
Ga0211666_102311552	3300020392	Marine	MDKKTNFPDLERLPPHNHFKHFLNWLINKPKVFFKDYIIKNFLDKNLELEILKLNLELKEYELTLLKKEMQEIRKYSNFL
Ga0211618_100275482	3300020393	Marine	MDKKTNFPDLERLPPHNHLKHFLEWLINKPKMIIEDYVKKNFPDKNLELELLKLDLELKEYELKLLKKEMKEIRKYSYFL
Ga0211636_101338382	3300020400	Marine	MKTTKMKTTKMTMRIKIMDKKTNFPDLERLPPHNHLKHFLEWLINKPKMMIENYVKKNFPNKNLELEILKQKLELKEFELALLKKEIQELRKYSNLLLK
Ga0211617_104492052	3300020401	Marine	HNHLKHFLEWLINKPKMIIEDYVKKNFPDKNLELELLKLDLELKEYELKLLKKEMKEIRKKSYFF
Ga0211617_104696752	3300020401	Marine	MRTKTMDKKTNFPDLERLPPHNHLKHFLEWLINKPKMMIEDYVKKNFPNKNLELEILKQKLELKEFELVLLKKEIQELRKYSNLLLK
Ga0211659_101594651	3300020404	Marine	TKMRMIIMKMMRIKTMDKKTNFPDLEILPPHNHYKHFLDWMISKPRMIIKDYVRKNFPDENLELENLKLDLQLKEYELTLLKKEIQELRKYSNLL
Ga0211659_102686692	3300020404	Marine	MRIKTMDKKTNFPDLEILPPHNHFKHFLYWLISKPKNIIEDYVKKNFSDKNLELELLKLNLELKEYELTLLKKEIQEIKKYSNLL
Ga0211659_104034552	3300020404	Marine	MRIKIMDKKTNFPDLERLPSHNHFEHFLKWLINKPKMIIKDYIIKNFPDKNLELEILKLNLELKEYELTLLKKEMQEIRKYSNFL
Ga0211668_100890802	3300020406	Marine	NFPDLERLPPHNHLKHFLEWLINKPKMMIENYVKKNFPNKNLELEILKQKLELKEFELALLKKEIQELRKYSNLLLK
Ga0211516_101223221	3300020413	Marine	MNKKTNFPDLEILPPHNHLKHFLDWLINKPRMIIENYVRKKFPDKNSELEILKLNLELKEYELTLLKKEIQELRKYSNLL
Ga0211528_102129681	3300020417	Marine	MKMMMRIKIMDKKTNFPDLERLPPHNHLKHFLDWLINKPRIKLKDYIRKNFTNENLELEVLKLDLQLKEYELTLLKKEIQELRKYSNLL
Ga0211528_103966172	3300020417	Marine	KTNFPDLEILPPHNHFKHFFDWLISKPRMIIEDYVRKNFPDKNLELEILKLNLELKEHELTLLKKEIQELRKYSNFL
Ga0211653_100172333	3300020421	Marine	MDKKTNFPDLERLPPHNHFKHFLDWLINKPRMIIENYVRKNFTDKNLELEILKLNLELKEYELILLKKEIQELRKY
Ga0211554_103883961	3300020431	Marine	MDKKTNFPDLEILPPHNHFKHFLDWMISKPRMIIKDYVRKNFPDENLELEILKLDLQLKEYELTLLKKEIQEL
Ga0211554_105447882	3300020431	Marine	MDKKTNFPDLERLPPHNHLKHFLDWLINKPRIKLKDYIRKNFTNKNLELEVLKLDLQLKEYELTLLKKEIQE
Ga0211565_100230022	3300020433	Marine	MMMKTKTMDKKTNFPHLERLPPHNHLKHFLEWLMNKPKMIIEEYIKKKFPDKNLELEILKQNLELKEYELLLLKKEIQELRKYSNFL
Ga0211576_101367532	3300020438	Marine	MDKKTNFPDLERLPPHNHFKHFLDWVITKPRMIIENYIIKNFPSKNLELETLKLNLELKEYELTVLKKEIQELRNYSNLL
Ga0211518_100092894	3300020440	Marine	MDKKTNFPDLERLPPHNHLKHFIEWLINKPKMMIEVYVKKNFPDKNLELEILKQNLELKEYELSLLKKEIQELKKYSNLSLK
Ga0211564_100028983	3300020445	Marine	MNKKTNFPDLEILPPHNHFKHFLDWLVNKPHWIIKDYIRKNFLDKNIELEVLKMNLEIKEIELTLLKNEINILKKSKQKV
Ga0211638_101120112	3300020448	Marine	MDKKTNFPDLERLPPHNHLKHFLEWLINKPKMIIEDYVKKNFPDKNLELEILKLNLELKEYELTLLKKEIQELRNILIFHKN
Ga0211473_103810552	3300020451	Marine	MRIKTMDKKTNFPDLEILPPHNHFKHFLDWLINKPRMIIKDYVRKNFTDKNLELELLKLNLELKEYELSLVKKEIQELRKYSNLL
Ga0211473_106827621	3300020451	Marine	LEILPPHNHFKHFLDWLISKPRVIIENYVRKNFPDKNLELEFLKLNLELKEYELTLLKKEIQEIKKYSNLL
Ga0211545_101703392	3300020452	Marine	MDKKTNFPDLEILPPHNHFKHFLNWLINKPKMIIKDYVVKNFPNKNLELEILKLNLELKEYELTLLKKEIQEIRKYSNFL
Ga0211548_102487132	3300020454	Marine	LPPHNHFKHFLDWMISKPRMIIKDYVRKNFPDENLELEILKLDLQLKEYELTLLKKEIQELRKYSNLL
Ga0211664_104820062	3300020455	Marine	MRIKTMDKKTNFPDLERLPPHNHIKHFLDWLINKPRIIIEDYVRKNFPDKNLELEFLKLNLELKEYELTVLKKEIQELRKYSNLL
Ga0211643_105052871	3300020457	Marine	MDKKTNFPDLEILPPHNHFKHFLNWLINKPRIIIEDYVRKNFSNKNLELEVLKLNLELKEYELTLLKKEIQELRKYSSFL
Ga0211546_105468802	3300020462	Marine	HNHFKHFLNWLINKPKMIFKDYIIKNFPDKNLELEILKLNLELKEYELTLLKKEIQEIRKYSNFL
Ga0211676_100110452	3300020463	Marine	MDKKTNFPDLKISPKHNHFKHFLDWLINKPRMIIRDYVRKNFPDENLELEILKLNLELKEYELTVLKKEIQELRKYSNLL
Ga0211676_100707613	3300020463	Marine	MDKKKNFPDLERLPSHNHLKHFLDWLINKPRIIIENYVRKNFSNENLELEVLKLNLELKEYELTVLKKEIQELRNYSNLL
Ga0211676_102319912	3300020463	Marine	MDKKTNFPDLERLPPHNHFKHFFVSLIGKPRMIIEDYLRKNFPNKNLELEILKLNLELKEYELTVLKKEIQELRKYSNFS
Ga0211676_102884061	3300020463	Marine	MRTKIMDKKTNFPDLERLPPHNHFKHFLNWLINKPKMIFKDYIIKNFPDKNLELEILKLNLELKEYELTLLKKEMQEIRKYYNFL
Ga0211676_104457602	3300020463	Marine	MKIKTMDKKTNFPDLEILPPHNHLKHFLDWLISKPRMIIENYVRKNFPDKDLELEILKLNLELKENELTLLKKEIQELRKYFNFRKN
Ga0211676_106210122	3300020463	Marine	DKKTNFPDLEILPPHNHFKHFLNWLISKPRMIIENYLRKNFPDKNLELEVLKLNLELKEYELTLLKKEIQELRNYSNLL
Ga0211640_105272291	3300020465	Marine	MDKKTNFPDLERLPPHNHFKHFLNWLINKPKMIFKDYIIKNFPDKNLELEILKLNLELKEYELTLLKKEMQEIRKYSNFL
Ga0211475_100472163	3300020468	Marine	EILPPHNHFKHFLNWLINKPRMIIEDYVRKNFSNKNLELEVLKLDLQLKEYELTLLKKEIQELRKYSNFL
Ga0211475_101315152	3300020468	Marine	MNKKTNFPDLEISPPHNHLKHFLDWLINKPRMIIENYVRKKFPDKNSELEILKLNLELKEYELTLLKKEIQELRKYSNLSKN
Ga0211577_100640683	3300020469	Marine	MMEIKIMDKKTNFPDLERLPPHNHFKHFFVSLIGKPRMIIEDYLRKNFPNKNLELEILKLNLELKEYELTVLKKEIQELRKYSNFS
Ga0211543_105668961	3300020470	Marine	MMMSIKIMDKKTNFPDLEILPPHNHFKHFFDWLISKPRMIIEDYVRKNFPDKNLELEILKLNLELKEHELTLLKKEIQELRKYSNFL
Ga0211579_106842592	3300020472	Marine	MDKKTDFPDLEKLPPHNHLKHFLDWLINKPRMIIEDYVIKNFPDKNLELEILKLNLELKEYELKLLKKEIQELRKYSYFL
Ga0211625_100006803	3300020473	Marine	MKMMRIKTMDKKTNFPDLEIIPPHNHFKHFLNWLINKPRIIIEDYIRKNYPDKNLELELLKLNLKLKEHELTLLKKEIQELRKYSNLL
Ga0209832_10624152	3300025830	Pelagic Marine	MMMRIKTMDKKTNFPDLEILPPHNHFKHFLDWLISKPRNIIEDYFRKNFPDKNLELELLKMNLELKEYELTLLKKEIQEIRKYSNLL
Ga0208407_10881442	3300026257	Marine	MNKKTNFPDLEILPPHNHFKHFLNWLINKPRMIIENYVRKNFPDKNLELEILKLNLELKKYELTVLKKEIQELRNNQ
Ga0315316_100827752	3300032011	Seawater	MDKKTNYPDLERLPPHNHFKHFLNWLINKPKMIFKDYIIKNFPDKNLELEILKLNLELKEYELTLLKKEMQEIRKYSNFL
Ga0315315_1000158717	3300032073	Seawater	MDKKTNFPDLEILPPHNHFKHFLGWLISKPRMIIEDYVRKNFPDKNLELKILKLNLELKEYELTLLKKEIQELRKYSNLL
Ga0315315_104100062	3300032073	Seawater	MKMMRIKTMDKKTNFPDLEILPPHNHFKHFLNWLINKPRMIIENYVRKNFPDKNLELEILKLNLELKEYELTVLKKEIQELRNNQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092697

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences