Metagenome / Metatranscriptome Family F092690

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092690
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	97 residues
Representative Sequence	VNDTTHPEDRNERLVRNLLALRMVLAMDQMQTGRWSERIEELDQELATLGHDMKSTAASAADGLRRSFLLPRLVNRRKRAAHRPSARATPRE
Number of Associated Samples	66
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	59.81 %
% of genes near scaffold ends (potentially truncated)	24.30 %
% of genes from short scaffolds (< 2000 bps)	90.65 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.065 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (28.972 % of family members)
Environment Ontology (ENVO)	Unclassified (32.710 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (40.187 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.67% β-sheet: 0.00% Coil/Unstructured: 43.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF02464	CinA	26.17
PF13470	PIN_3	15.89
PF04608	PgpA	2.80
PF12697	Abhydrolase_6	2.80
PF04552	Sigma54_DBD	1.87
PF00196	GerE	0.93
PF01442	Apolipoprotein	0.93
PF00684	DnaJ_CXXCXGXG	0.93
PF03968	LptD_N	0.93
PF04715	Anth_synt_I_N	0.93
PF01170	UPF0020	0.93
PF00561	Abhydrolase_1	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1546	Nicotinamide mononucleotide (NMN) deamidase PncC	Coenzyme transport and metabolism [H]	26.17
COG1267	Phosphatidylglycerophosphatase A	Lipid transport and metabolism [I]	2.80
COG0147	Anthranilate/para-aminobenzoate synthases component I	Amino acid transport and metabolism [E]	1.87
COG1508	DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog	Transcription [K]	1.87
COG0116	23S rRNA G2445 N2-methylase RlmL	Translation, ribosomal structure and biogenesis [J]	0.93
COG0286	Type I restriction-modification system, DNA methylase subunit	Defense mechanisms [V]	0.93
COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.93
COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	Translation, ribosomal structure and biogenesis [J]	0.93
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.93
COG2263	Predicted RNA methylase	General function prediction only [R]	0.93
COG2264	Ribosomal protein L11 methylase PrmA	Translation, ribosomal structure and biogenesis [J]	0.93
COG2265	tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family	Translation, ribosomal structure and biogenesis [J]	0.93
COG2813	16S rRNA G1207 or 23S rRNA G1835 methylase RsmC/RlmG	Translation, ribosomal structure and biogenesis [J]	0.93
COG2890	Methylase of polypeptide chain release factors	Translation, ribosomal structure and biogenesis [J]	0.93
COG4123	tRNA1(Val) A37 N6-methylase TrmN6	Translation, ribosomal structure and biogenesis [J]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.07 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.07 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.07 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	98.13 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	95.33 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	93.46 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	87.85 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	2.80 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Ramlibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter	52.34 %
unclassified Comamonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae	4.67 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	2.80 %
Caenimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caenimonas	0.93 %
Limimaricola	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Limimaricola	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Ramlibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter	46.73 %
Comamonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	4.67 %
unclassified Methylibium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium → unclassified Methylibium	1.87 %
Limimaricola cinnabarinus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Limimaricola → Limimaricola cinnabarinus	0.93 %
unclassified Caenimonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caenimonas → unclassified Caenimonas	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Ramlibacter sp. HM2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	46.73 %
Comamonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	4.67 %
Methylibium sp. T29-B	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium → unclassified Methylibium → Methylibium sp. T29-B	1.87 %
Caenimonas sp. SL110	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caenimonas → unclassified Caenimonas → Caenimonas sp. SL110	0.93 %
Limimaricola cinnabarinus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Limimaricola → Limimaricola cinnabarinus	0.93 %
Unclassified	root	N/A	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2067725004\|GPKC_F5OHE3B02ITIZ6	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	515	Open in IMG/M
3300000156\|NODE_c0504712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter	1045	Open in IMG/M
3300000956\|JGI10216J12902_111067396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	758	Open in IMG/M
3300000956\|JGI10216J12902_117841686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	823	Open in IMG/M
3300003323\|rootH1_10028672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1270	Open in IMG/M
3300003790\|Ga0055528_1069159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	643	Open in IMG/M
3300004081\|Ga0063454_100959891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	683	Open in IMG/M
3300004463\|Ga0063356_100481168	All Organisms → cellular organisms → Bacteria → Proteobacteria	1633	Open in IMG/M
3300004800\|Ga0058861_11836463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	598	Open in IMG/M
3300005093\|Ga0062594_103034912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Limimaricola → Limimaricola cinnabarinus	524	Open in IMG/M
3300005327\|Ga0070658_10536942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1012	Open in IMG/M
3300005327\|Ga0070658_11175639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	667	Open in IMG/M
3300005337\|Ga0070682_101002888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter	693	Open in IMG/M
3300005356\|Ga0070674_100897611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	772	Open in IMG/M
3300005459\|Ga0068867_100546006	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300005511\|Ga0077121_10012866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	11115	Open in IMG/M
3300005511\|Ga0077121_10391969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	975	Open in IMG/M
3300005515\|Ga0077122_10087057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	3034	Open in IMG/M
3300005515\|Ga0077122_10198698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	1636	Open in IMG/M
3300006038\|Ga0075365_10379268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter	997	Open in IMG/M
3300006038\|Ga0075365_10401422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	967	Open in IMG/M
3300006042\|Ga0075368_10417280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	591	Open in IMG/M
3300006169\|Ga0082029_1062912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	17132	Open in IMG/M
3300006169\|Ga0082029_1133151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1391	Open in IMG/M
3300006169\|Ga0082029_1212362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caenimonas → unclassified Caenimonas → Caenimonas sp. SL110	4050	Open in IMG/M
3300006178\|Ga0075367_10935919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	553	Open in IMG/M
3300006195\|Ga0075366_10141127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1456	Open in IMG/M
3300006353\|Ga0075370_10608949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	662	Open in IMG/M
3300006353\|Ga0075370_10765090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	588	Open in IMG/M
3300006853\|Ga0075420_100043840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	3988	Open in IMG/M
3300006880\|Ga0075429_100235780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1603	Open in IMG/M
3300006969\|Ga0075419_10823093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	666	Open in IMG/M
3300007790\|Ga0105679_10161433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1068	Open in IMG/M
3300007790\|Ga0105679_10829673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1840	Open in IMG/M
3300009095\|Ga0079224_103847538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	595	Open in IMG/M
3300009177\|Ga0105248_13161584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	524	Open in IMG/M
3300010037\|Ga0126304_10419389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	895	Open in IMG/M
3300010366\|Ga0126379_13256781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	544	Open in IMG/M
3300012212\|Ga0150985_100600007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	731	Open in IMG/M
3300012212\|Ga0150985_109871945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter	2010	Open in IMG/M
3300012212\|Ga0150985_120651335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	669	Open in IMG/M
3300012212\|Ga0150985_120871500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	609	Open in IMG/M
3300012212\|Ga0150985_122630249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	675	Open in IMG/M
3300012469\|Ga0150984_100135643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	726	Open in IMG/M
3300012469\|Ga0150984_111366570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	825	Open in IMG/M
3300012469\|Ga0150984_113620258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1254	Open in IMG/M
3300012469\|Ga0150984_117393347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	612	Open in IMG/M
3300012469\|Ga0150984_119973033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	720	Open in IMG/M
3300012469\|Ga0150984_123435748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1389	Open in IMG/M
3300012984\|Ga0164309_11211026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	634	Open in IMG/M
3300012987\|Ga0164307_11525274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	565	Open in IMG/M
3300015078\|Ga0167660_1004814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1410	Open in IMG/M
3300017965\|Ga0190266_10389930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	768	Open in IMG/M
3300018469\|Ga0190270_13470818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	500	Open in IMG/M
3300020152\|Ga0196971_1019635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1611	Open in IMG/M
3300025273\|Ga0209673_1014991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2969	Open in IMG/M
3300025273\|Ga0209673_1046859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium → unclassified Methylibium → Methylibium sp. T29-B	1176	Open in IMG/M
3300025302\|Ga0207426_1123951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter	635	Open in IMG/M
3300025909\|Ga0207705_10471045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	975	Open in IMG/M
3300025937\|Ga0207669_11058835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	683	Open in IMG/M
3300026089\|Ga0207648_10760274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	900	Open in IMG/M
3300028380\|Ga0268265_11555620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	666	Open in IMG/M
3300028587\|Ga0247828_10001658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	7341	Open in IMG/M
3300028587\|Ga0247828_10130381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1234	Open in IMG/M
3300028587\|Ga0247828_10851545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	583	Open in IMG/M
3300028592\|Ga0247822_11426058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	583	Open in IMG/M
3300028596\|Ga0247821_10443981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	816	Open in IMG/M
3300028596\|Ga0247821_10501016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	772	Open in IMG/M
3300028596\|Ga0247821_10600861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	710	Open in IMG/M
3300028596\|Ga0247821_10627487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	695	Open in IMG/M
3300028596\|Ga0247821_10747545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	641	Open in IMG/M
3300028596\|Ga0247821_10974292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	567	Open in IMG/M
3300028596\|Ga0247821_11046495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	549	Open in IMG/M
3300028596\|Ga0247821_11232061	Not Available	509	Open in IMG/M
3300028597\|Ga0247820_10353183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter	974	Open in IMG/M
3300028608\|Ga0247819_10090909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1513	Open in IMG/M
3300028608\|Ga0247819_10185087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1111	Open in IMG/M
3300028608\|Ga0247819_10415198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	779	Open in IMG/M
3300028812\|Ga0247825_10983229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	613	Open in IMG/M
3300028812\|Ga0247825_11227818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	547	Open in IMG/M
3300031047\|Ga0073995_11016902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	600	Open in IMG/M
3300031231\|Ga0170824_127268472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	617	Open in IMG/M
3300031548\|Ga0307408_100348042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1257	Open in IMG/M
3300031548\|Ga0307408_102033812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	553	Open in IMG/M
3300031548\|Ga0307408_102361668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	516	Open in IMG/M
3300031562\|Ga0310886_10696962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	632	Open in IMG/M
(restricted) 3300031825\|Ga0255338_1001173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	53789	Open in IMG/M
3300031852\|Ga0307410_11284522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	640	Open in IMG/M
3300031938\|Ga0308175_100564752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1220	Open in IMG/M
3300031938\|Ga0308175_100883361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	982	Open in IMG/M
3300031939\|Ga0308174_10612759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	902	Open in IMG/M
3300031940\|Ga0310901_10428770	All Organisms → cellular organisms → Bacteria → Proteobacteria	581	Open in IMG/M
3300031996\|Ga0308176_10859747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium → unclassified Methylibium → Methylibium sp. T29-B	951	Open in IMG/M
3300031996\|Ga0308176_12531243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	547	Open in IMG/M
3300032000\|Ga0310903_10409747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	692	Open in IMG/M
3300032074\|Ga0308173_10229903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1559	Open in IMG/M
3300032074\|Ga0308173_10432121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1166	Open in IMG/M
3300032074\|Ga0308173_11002399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	776	Open in IMG/M
3300032074\|Ga0308173_12051658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	539	Open in IMG/M
3300032144\|Ga0315910_10131886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1852	Open in IMG/M
3300032144\|Ga0315910_10576152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	871	Open in IMG/M
3300032144\|Ga0315910_10637101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	827	Open in IMG/M
3300032770\|Ga0335085_12152036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	562	Open in IMG/M
3300033550\|Ga0247829_11767132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	510	Open in IMG/M
3300034268\|Ga0372943_0105719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1662	Open in IMG/M
3300034268\|Ga0372943_0712652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. HM2	663	Open in IMG/M
3300034384\|Ga0372946_0035522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2226	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.01%
Host-Associated	Host-Associated	42.06%
Engineered	Engineered	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.01%
Plants	Host-Associated → Plants	41.12%
Human	Host-Associated → Human	0.93%
Solid Waste	Engineered → Solid Waste	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.01%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.21%
Roots	Host-Associated → Plants → Roots	11.21%
Digestive System	Host-Associated → Human → Digestive System	0.93%
Rhizome	Host-Associated → Plants → Rhizome	0.93%
Grass	Engineered → Solid Waste → Grass	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.47%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.48%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.54%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	6.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.67%
Endophytes	Host-Associated → Plants → Roots → Endophytes	4.67%
Sand	Environmental → Terrestrial → Soil → Sand	3.74%
Loam	Environmental → Terrestrial → Soil → Loam	1.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.93%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.93%
Composting	Engineered → Solid Waste → Grass → Composting	0.93%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	28.97%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.54%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	6.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.67%
Unclassified	Host-Associated → Plants → Roots → Endophytes → Unclassified	4.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.80%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	2.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.93%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.93%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.93%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.93%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	28.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.54%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	6.54%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	5.61%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	4.67%
Arabidopsis Root	Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root	4.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.74%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	2.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.93%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Agricultural Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.93%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725004	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003323	Sugarcane root Sample H1	Host-Associated	Open in IMG/M
3300003790	Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2	Host-Associated	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004800	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005511	Combined assembly of arab plate scrape MF_Col (Combined Assembly)	Host-Associated	Open in IMG/M
3300005515	Combined assembly of arab plate scrape MF_Cvi (Combined Assembly)	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006353	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009095	Agricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2015	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300015078	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11a, vegetated hydrological feature)	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300020152	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_10-13C	Environmental	Open in IMG/M
3300025273	Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes)	Host-Associated	Open in IMG/M
3300025302	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031047	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031825 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - MeOH1_35cm_T4_195	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M
3300034384	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
GPKC_02899460	2067725004	Soil	LIESPSPEERKARLVRNLLALRMVLEVDQMQSGRWSDRIAELDEELAALGHDMKSTVAAASENLRRTFLLPRLVNRRKRAGHRAPVRVGSPGVTADP
NODE_05047122	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MSPEPCNARLVRNLLALRTLLSLEQMQTGKWADRIAEIDEELASLGHDMKSTAACAVEGLRRSFMLPRLVSRRARRRVNMPCP*
JGI10216J12902_1110673961	3300000956	Soil	MLTGIETSPKNDTMNPDLEDRNARLVRNLMALRMVLAMDQMQTGKWSERIEEIDEELATLGHDMKSTAACAADGLRRTFLLPRLINRRSRAAHRLPARATTRE*
JGI10216J12902_1178416861	3300000956	Soil	MVAGTCDATHVKRVTPLTEVPSPEERKARLVRNLLALRRVLEADQMQSGRWSDRIEELDEELASLGHDMKSTLATAAESLRRTFLLPRLVNRRKRAARRPSGQAVPQE*
rootH1_100286722	3300003323	Sugarcane Root And Bulk Soil	MLGASPENDAVHDSSFPEDRNARLVRNLLALRAVLAMDQMQTGRWSERIAELDQELAALGHDMTSTAATATESLRRTFLLPRLVNRRKRAAHRPSGRVVPQE*
Ga0055528_10691591	3300003790	Arabidopsis Root	VSDTRFPDDHTSRLVRNLLALRTVLAMDQMQTGRWSERIEEIDQELATLGHDMKSTAASATESLRRTFLLPHLVNRRKRATHRPSGRAAPQE*
Ga0063454_1009598911	3300004081	Soil	MLEASKKSNDVSDTSYPEDRKARLVRNLLALRMVLALDQMQTGRWADRIEELDQELASLGHDMKSTAASASDNLRRTFLLPRLVNRRKGAARRPGGRVVPTE*
Ga0063356_1004811682	3300004463	Arabidopsis Thaliana Rhizosphere	VDDASFPDDRNARLVRNLLALRTVLCMEQMQTGRWSERIEELDQELAALGHDMKSTAATATESLRRTVLLTRLVNRRKRAHRSSGRPVPQD*
Ga0058861_118364631	3300004800	Host-Associated	MLETREEKPTVNDTTLPEDRNERLVRNLLALRMVLAMDQMQTGRWSDRIEELDQELASLGHDMKSTSASAADGLRRSFLLPRLVNRRKRAAHRPSA
Ga0062594_1030349121	3300005093	Soil	LVSREESDIVNTAPNPQQTEERNARLVRNLLALRMVLATDQMQTGKWGDRIAEIDEELAVLGHDMKSTAASAAEGLRRTFLLPRLVKQRRVRANHRAATR
Ga0070658_105369422	3300005327	Corn Rhizosphere	MLEAHNETTAPVTDTTFPDDRNARLVRNLLALRMVLAMDQMQTGRWSDRIEEIDQELASLGHDMKSTAASATESLRRTFLLPRLVNRRKRSTHRHSA*
Ga0070658_111756392	3300005327	Corn Rhizosphere	MLEAREEKPTVNDTTLPEDRNERLVRNLLALRMVLAMDQMQTGRWSDRIEELDQELASLGHDMKSTAASAADGLRRSFLLPRLVNRRKRAAHRPSARATPRE*
Ga0070682_1010028882	3300005337	Corn Rhizosphere	MTADLEDRNARLVRNLLALRMVLSMDQMQTGKWGDRIEEIDEELATLGHDMKSTAACATESLRRTFLLPRLVNRRNRAAHLQPARATPRE*
Ga0070674_1008976111	3300005356	Miscanthus Rhizosphere	MLTATNNENDAVNHPSFPEDRKARLVHNLLALRRVLAMEQMQTGRCTERIQELDEELASLGHDMKSTAASATESLRRTFLLPRLVNRRKRVPHRSAVPQD*
Ga0068867_1005460062	3300005459	Miscanthus Rhizosphere	VSDASSLEDEDRNARFVRNLLALRMVLALEQMQTGRWSERIAELDEELAGLGHDMKSTAACAADGLRRTFLLPRLASRRKRGTHRPAADAPVQGSN*
Ga0077121_1001286613	3300005511	Arabidopsis Rhizosphere	VSDTRFPDDRKARLVRNLLALRTVLAMDQMQTGRWSERIEEIDEELAGLGHDMKSIAAFATESLRRTFLLPRLVNRRKRAAHRRLGREAPQE*
Ga0077121_103919693	3300005511	Arabidopsis Rhizosphere	AVRQGTHQARVMLGASTENDAVTDSSFPEDRNARLVRNLLALRAVLAMEQMQTGRWSERIEELDQELASLGHDMKSTAAFATECLRRTFLLPRLVSRRKRAAHGLAKQPQPQE*
Ga0077122_100870572	3300005515	Arabidopsis Root	MSTYVAVRHGALQARVMLGAPHENDAVNDSSFPEDRKARLVRNLLALRAVLAMEQMQTGRWSERIEELDQELASLGHDMKSTAAFATECLRRTFLLPRLVSRRKRAAHGLAKQPQPQE*
Ga0077122_101986982	3300005515	Arabidopsis Root	MNTESEVDRNARLVRNLLALRMVLCMDQMQTGKWGDRIEEIDQELATLGHDMKSTAACATESLRRTFLLPRLVSRRSRAAHRPPARAVPRG*
Ga0075365_103792682	3300006038	Populus Endosphere	MSTYVAVRHGALQARVMLGAPHENDAVNDSSFPEDRKARLVRNLLALRAVLAMEQMQTGRWSERIEELDQELASLGHDMKSTAAFATECLRRTFLLPRLVSRRKRATHGPAKQAQPQE*
Ga0075365_104014222	3300006038	Populus Endosphere	MLVSIEQLPKNEAMSADLEEDRNARLVRNLLALRTVLSMDQMQTGKWGERIAEIDDALASLGHDMKSTAACAAEGMRRMFLLPRLVNRRSRAAHRPPARAAPRE*
Ga0075368_104172801	3300006042	Populus Endosphere	MATDAPVRQAVLQARVMLGAQDENDAVTDSSFPEDRNARLVRNLLALRAVLSMEQMQTGRWSERIEELDQELARLGHDMKSTAAFATECLRRTFLLPRLVTRRKRAAHGPAKQPLPQE*
Ga0082029_106291220	3300006169	Termite Nest	MLGHVNESKSAVIQTPAIEERQARLVRNLLALRMVLSLDQMQTGRWTERIEEIDQELASLGHDMKSTAACAVEGLRRSFLLSGLVSRRSRAAHRRSVRAAPRE*
Ga0082029_11331513	3300006169	Termite Nest	RRLARGMLSHVNRANNDVSTAPTPEERKARLVRNLLALRMVLAMDQMQTGRWTERIEEIDQELASLGHDMKSTVASATESLRRTVLLPRLVKRRKRGAHGVPALATSSD*
Ga0082029_12123625	3300006169	Termite Nest	VSQQPTTEDCNARLVRNLLAVRMVLAMEQMETGRWSDRIEEIDEELASLGHDMKSTAACAADGLRRTFLLPRLVNRRKRAARRPSARAVPLE*
Ga0075367_109359191	3300006178	Populus Endosphere	NDTMNPDLEDRNARLVRNLMALRMVLAMDQMQTGKWSERIEEIDEELATLGHDMKSTAACAADGLRRTFLLPRLINRRSRAAHRLPARAVPRE*
Ga0075366_101411273	3300006195	Populus Endosphere	MLGAPHENDAVNDSSFPEDRKARLVRNLLALRAVLAMEQMQTGRWSERIEELDQELASLGHDMKSTAAFATECLRRTFLLPRLVSRRKRATHGPAKQAQPQE*
Ga0075370_106089492	3300006353	Populus Endosphere	MSATTTPKEEEQSRLVRNLMALRMVLSVDQMQTGKWSEHIEELDEALAGLGHDMKSTAACAADGLRRTFLLPHLVNQRTRAGRRPSRQAIPQG*
Ga0075370_107650902	3300006353	Populus Endosphere	MLASIETDTTNNAMNTEPEEDRNARLVRNLLALRTVLSMDQMQTGKWGERIEEIDEELAALGHDMKSTAACATESLRRTFLLPRLVSRKSRATHRPPARAVPRG*
Ga0075420_1000438403	3300006853	Populus Rhizosphere	VRNLLALRMVLAMEQMQTGRWTDRIEELDEELATLGHDMKSTAASATESLRRTFLLPRLVKRRKHSTHRPSVRPAPRE*
Ga0075429_1002357803	3300006880	Populus Rhizosphere	VRNLLALRMVLAMEQMQTGRWSDRIEELGEELATLGHDMRSTAASATESLRRTFLLPRLVKRRKRSTHRPSVRPAPRE*
Ga0075419_108230932	3300006969	Populus Rhizosphere	MLVPGEESKAVSHSPSPEPRNARLVRNLLALRMVLAMEQMQTGRWTDRIEELDEELATLGHDMKSTAASATESLRRTFLLPRLVKRRKRSTHRPSVRPAPRE*
Ga0105679_101614332	3300007790	Soil	VTELPATEDRNARLVRNLLALRMVLALDQMQTGRWSERIAEIDEELAGLGHDMTSTAACAMEGLRRSMLLPRLISRRRAASRRPKAAQA*
Ga0105679_108296733	3300007790	Soil	VTAFPANEDRNARLVRNLLALRMLLALDQMQTGRWSERIEEIDQELANLGHDMTSTAACAMEGLRRSVLLPRLVNRRRAAHRRANVPQG*
Ga0079224_1038475382	3300009095	Agricultural Soil	VNDLAAIEDRNARLVRNLLALRMVLALDQMQTGRWADRIAEIDEELAGLGHDMTSTAACAMEGLRRSVLLPRLVNRHRQARRRAALAET*
Ga0105248_131615842	3300009177	Switchgrass Rhizosphere	MTTDAAVRQGVHQARVMLGALPENDAVTDSSFPEDRNARLVRNLLALRAVLAMEQMHSGRWSERIEELDQELASLGHDMTSTAAFATECLRRTFLLPRLVLRRKRAAHGPSKQPLPQG*
Ga0126304_104193891	3300010037	Serpentine Soil	LIEAPSPEERKARLVRNLLALRMVLEMDQMQSGRWSDRIAELDEELAALGHDMKSTVAAASESLRRTFLLPRLVNRRKRAGHRAPASVVPQE*
Ga0126379_132567811	3300010366	Tropical Forest Soil	VNTAPNPQQTEERQARLVRNLLALRMVLATDQMQTGKWSDRIAEIDEELANLGHDMKSTAASAAEGLRRTFLLPRLIKQRRVRANHRAASRAGSPS*
Ga0150985_1006000072	3300012212	Avena Fatua Rhizosphere	MLGTPQENNDVTDSSFPEDRNARLVRNLLALRTVLAMDQMQTGRWSERIEELDEELASLGHDMKSTAATATESLRRTFLLPRLVSRRTRSTHRRPVPQE*
Ga0150985_1098719453	3300012212	Avena Fatua Rhizosphere	RRSTWINDVSDTSYPEDRKARLVRNLLALRMVLALEQMQTGRWADRIEELDQELASLGHDMKSTAASASDNLRRTFLLPRLVNRRKGAARRPGGRVVPTE*
Ga0150985_1206513352	3300012212	Avena Fatua Rhizosphere	MFPDDTKARLVRNLLALRMVLSMDQMQTGKWGDKIAELDEELAALGHDMKSTAASAADGLRRSMLLPRLVNRRSRAGHRPSVRATPRE*
Ga0150985_1208715001	3300012212	Avena Fatua Rhizosphere	MLEPTTDNDAVDDSSFPDDRHARLVRNLLALRTVLCMDQMQTGRWSERIEELDQELAALGHDMKSTAATATESLRRTFLLPRLVKRRKRPAHRPAGRGVPQE*
Ga0150985_1226302492	3300012212	Avena Fatua Rhizosphere	MLARVMLPIRDESHIVNPLPTSEDHNERLVRNLLALRMVLAMDQMQTGRWSERIEELDEELASLGHDMKSTAASAADGLRRSFLLPRLVNRRKRAAHRPPARATPRE*
Ga0150984_1001356432	3300012469	Avena Fatua Rhizosphere	MLEPTTDNDAVDDSSFPDDRNARLVRNLLALRSVLCMDQMQTGRWSERIEELDQELAALGHDMKSTAATATESLRRTFLLPRLVKRRKRPAHRPAGRGVPQE*
Ga0150984_1113665702	3300012469	Avena Fatua Rhizosphere	MLGSVATQNESETTMFPDDTKARLVRNLLALRMVLSMDQMQTGKWGDKIAELDEELAALGHDMKSTAASAADGLRRSMLLPRLVNRRSRAGHRPSVRATPRE*
Ga0150984_1136202583	3300012469	Avena Fatua Rhizosphere	EDRNARLVRNLLALRMVLAMDQMQTGRWSERIEELDEELASLGHDMKSTAASATDSLRRTFLLPRLVNRRKRAAHRRPLSQD*
Ga0150984_1173933471	3300012469	Avena Fatua Rhizosphere	HDTLQARVMLSAPQENDAVTDSSFPEDRTARLVRNLLALRTVLAMDQMQTGRWSERIEELDEELASLGHDMKSTAATATESLRRTFLLPRLVSRRQRSTHRRVVSQE*
Ga0150984_1199730332	3300012469	Avena Fatua Rhizosphere	VTSTELNGDRNARLVRNLLALRMVLSVDQMETGKWTERIEEIDQELANLGHDMKSTAACAAEGLRRTFLLPRLVTRRDRARRSARATK*
Ga0150984_1234357481	3300012469	Avena Fatua Rhizosphere	DDAVTETPFPEERNARLVRNLLALRMVLAMEQMQTGRWADRIEELDEELASLGHDMKSTAATATDSLRRTFLLPRLVNRKKRAAHRPPGRAVPQE*
Ga0164309_112110261	3300012984	Soil	MNAESEEDRNTRLVRNLLALRTVLSMDQMQTGKWGDRIEEIDEELATLGHDMKSTAACAADGLRRTFLLPRLVNRRSRAAHRPPARATPRE*
Ga0164307_115252741	3300012987	Soil	MTATNTLTDEGQSRLVRNLMALRLVLSVNQMQTGKWSEHIEELDEALAGLGHDMKSTAACAAEGLRRTFLLPRLVSQRTRAGRRPSRQAIPQG*
Ga0167660_10048144	3300015078	Glacier Forefield Soil	MNADLEEDRNARLVRNLMALRMVLAMDQMQTGKWGDRIEELDDELATLGHDMKSTAACAADGLRRTFLLPRLINRRSRAAHRPPGRATPRE*
Ga0190266_103899302	3300017965	Soil	MNPDLEDRNARLVRNLMALRMVLAMDQMQTGKWGDRIEEIDEELATLGHDMKSTAACAAEGLRRTFLLPRLINRISRAAHRQPARAVPRE
Ga0190270_134708182	3300018469	Soil	VTASESPEDRTARLVRNLLALRTVLSMEQMQTGRWSDRIEELDQELANLGHDMTSTVACATEGLRRTMLLSRLASRRKRGSVHRTAGKDLARKS
Ga0196971_10196352	3300020152	Soil	MGSCTHPMKASAVTEAPATEEHQARLVRNLLALRMVLALDQMQTGRWSDRIDEIDEELASLGHDMKSTAACAMEGLRRSVLLPRLVNRRSRAVRHSRKLPQG
Ga0209673_10149912	3300025273	Arabidopsis Root	VSDTRFPDDRKARLVRNLLALRTVLAMDQMQTGRWSERIEEIDEELAGLGHDMKSIAAFATESLRRTFLLPRLVNRRKRAAHRRLGREAPQE
Ga0209673_10468592	3300025273	Arabidopsis Root	VSDTRFPDDHTSRLVRNLLALRTVLAMDQMQTGRWSERIEEIDQELATLGHDMKSTAASATESLRRTFLLPHLVNRRKRATHRPSGRAAPQE
Ga0207426_11239512	3300025302	Arabidopsis Rhizosphere	MNTESEVDRNARLVRNLLALRMVLCMDQMQTGKWGDRIEEIDQELATLGHDMKSTAACATESLRRTFLLPRLVSRRSRAAHRPPARAVPRG
Ga0207705_104710452	3300025909	Corn Rhizosphere	MLEAHNETTAPVTDTTFPDDRNARLVRNLLALRMVLAMDQMQTGRWSDRIEEIDQELASLGHDMKSTAASATESLRRTFLLPRLVNRRKRSTHRHSA
Ga0207669_110588352	3300025937	Miscanthus Rhizosphere	MLTATNNENDAVNHPSFPEDRKARLVHNLLALRRVLAMEQMQTGRCTERIQELDEELASLGHDMKSTAASATESLRRTFLLPRLVNRRKRVPHRSAVPQD
Ga0207648_107602742	3300026089	Miscanthus Rhizosphere	VSDASSLEDEDRNARFVRNLLALRMVLALEQMQTGRWSERIAELDEELAGLGHDMKSTAACAADGLRRTFLLPRLASRRKRGTHRPAADAPVQGSN
Ga0268265_115556201	3300028380	Switchgrass Rhizosphere	VTPTPTPQYTEERDARLVRNLLAMRMVLALDQMQTGKWSDRIAEIDEELANLGHDMQSTAVCAADGLRRTFLLPRLVNQRRVRANHRAA
Ga0247828_100016582	3300028587	Soil	MLCDREESKEVSDDASPEQRNARLVRNLLALRRVLAMEQMQTGRGSDRIEELDQELATLGHDMKSTAASATESLRRTFLLPRLVKRRKSATHRPSAQGAPLE
Ga0247828_101303812	3300028587	Soil	LNDAPSPEERKARLVRNLLALRRVLEMDQMQSGRWSDRIEELDEELATLGHDMKSTLATASESLRRTFLLPRLVSRRKRAAHRPSGQAVPRE
Ga0247828_108515452	3300028587	Soil	LTEVPSPEERKARLVRNLLALRRVLEAEQMQSGRWSDRIEELDQELASLGHDMKSTLATAAESLRRTFLLPRLVNRRKRAAHRPSGQAVPQE
Ga0247822_114260582	3300028592	Soil	MLCDREESKEVSDDASSEQRNARLVRNLLALRRVLAMEQMQTGRGSDRIEELDQELATLGHDMKSTVASATESLRRTFLLPRLVKRRKSATHRPSAQGAPLE
Ga0247821_104439811	3300028596	Soil	MLCDREESKEVSDDASPEQRNARLVRNLLALRRVLAMEQMQTGRGSDRIEELDQELATLGHDMKSTAASATESLRRTFLLPRLVKRRR
Ga0247821_105010161	3300028596	Soil	VTPTPTPQYTEERDARLVRNLLAMRMVLAMDQMQTGKWSDRIAEIDEELANLGHDMQSTAACAADGLRRTFLLPRLVNQRRVRANHRAATRAGPRN
Ga0247821_106008612	3300028596	Soil	MLCDREESKEVSDNASPEQRTARLVRNLLALRRVLAMEQMQTGRGGERIEELDQELATLGHDMKSTAASATESLRRTFLLPRLVKRRRSATHRPSAQGAPLE
Ga0247821_106274872	3300028596	Soil	LNDAPSPEERKARLVRNLLALRRVLEMDQMQSGRWSDRIEELDEELATLGHDMKSTLATASESLRRTFLLPRLVSRRKRAAH
Ga0247821_107475451	3300028596	Soil	VSDASNLEDRNARMVRNLLALRLVLAMEQMQTGRWSERIAELDEELASLGHDMKSTAACAADGLRRTYLLPRLVSRRKRGTHRTQAGAPAQGSN
Ga0247821_109742921	3300028596	Soil	VSERTTSEEHNARLVRNLLALRMVLAMDQMQTGRWSDRIEELDQELASLGHDMKSTAASATESLRRTFLLPRLVNRRKRANHRPPVARI
Ga0247821_110464951	3300028596	Soil	PLIETPSPEERKARLVRNLLALRMVLEMDQMQSGRWSDRIAELDEELAALGHDMKSTVAAASENLRRTFLLPRLVNRRKRAGHRAPTRVAPQE
Ga0247821_112320611	3300028596	Soil	CVLHLARRPRGMLCAREESKNVSDDASPQERNARLLRNLLALRRVLAMEQMQTGRGSDRIEELDQELATLGHDMKSTAASATESLRRTFLLPRLVKRRKSATHRPSALGAPLE
Ga0247820_103531831	3300028597	Soil	VKRATPLTEVPSPEERKARLVRNLLALRRVLEAEQMQSGRWSDRIEELDQELASLGHDMKSTLATAAESLRRTFLLPRLVNRRKRAAHRPW
Ga0247819_100909093	3300028608	Soil	MLCDREESKEVSDDASPEQRNARLVRNLLALRRVLAMEQMQTGRGSDRIEELDQELATLGHDMKSTAASATESLRRTFLLPRLVKRRRSATHRPSAQGAPLE
Ga0247819_101850871	3300028608	Soil	VTPTPTPQYTEERDARLVRNLLAMRMVLAMDQMQTGKWSDRIAEIDEELANLGHDMQSTAACAADGLRRTFLLPRLVNQRRVRANHRAAT
Ga0247819_104151982	3300028608	Soil	MLCDREESKEVSDNASPEQRTARLVRNLLALRRVLAMEQMQTGRGGERIEELDQELATLGHDMKSTAASATESLRRTFLLPRLVKRR
Ga0247825_109832292	3300028812	Soil	MLYTSDESIQVTHDDLEDRNARLVRNLLALRMVLAMDQMQTGRWSDRIEEIDQELAILGHDMKSTAACAAEGLRRTFLLPRLVSRRNRNGHRARVTPRD
Ga0247825_112278181	3300028812	Soil	AASTPNTASFRQARKLARVMLAAKTTRDIVTAPESTEDRDARLVRNLLALRTVLSMDQMQTGRWSERIEELDQELATLGHDMKSTTACAAEGLRRTFLLPRLMNRSGRGKHRTTAHVK
Ga0073995_110169022	3300031047	Soil	VNDTTLPEDRNDRLVRNLLALRMVLAMDQMQTGRWAERIEELDQELATLGHDMKSTAASAADGLRRSFLLPRLVNRRKRAGHRPSTRAAPRE
Ga0170824_1272684722	3300031231	Forest Soil	MNTDLEEDRNARLVRNLLALRMVLCMDQMQTGKWGDRIEEIDEELATLGHDMKSTAACAAEGLRRSFLLPRLINRRSRAAHRTPARATPRE
Ga0307408_1003480422	3300031548	Rhizosphere	VTEFPATEERNARLVRNLLALRMVLSLDQMQTGRWGERIEEIDQELATLGHDMKSTAACAVDGLRRSFLLPRLVNRRKRAGHRPARSTPQD
Ga0307408_1020338122	3300031548	Rhizosphere	MTPAIASEDHQARLVRNLLAMRMVLAMDQMQTGRWSERIEEIDEELQRLGHDMKSTAASATEHLRRTLLLPRLLSRRKRAAHRPSGRPLPRGPR
Ga0307408_1023616682	3300031548	Rhizosphere	VNPASSTEECYARLVRNLLALRTVLALEQMQTGRCSDRIQEIDEELAALGHDMKSTAACAADGLRRMFLLPRLVKRRSRAAHRPSARAVPQE
Ga0310886_106969622	3300031562	Soil	LTEVPSPEERKARLVRNLLALRRVLEADQMQSGRWSDRIEELDEELASLGHDMKSTLATAAESLRRTFLLPRLVNRRKRAAHRPSGQAVPQE
(restricted) Ga0255338_100117313	3300031825	Sandy Soil	VSPASPNPNHERDARLVRNLLALRMVLAMDQMQTGRWSDRIQEIDDELANLGHDMKSTLASATEGLRRSVLLPRLVNRRVRANHRAAVLAGSRN
Ga0307410_112845222	3300031852	Rhizosphere	VTNPDALEDRNARLVRNLLALRMVLAMDQMQTGRWSDRIEEIDEELATLGHDMKSTAACAAEGLRRTFLLPRLVSRRNRNGHRARVIPQE
Ga0308175_1005647523	3300031938	Soil	MLEPTTDNDAVDDSSFPDDRNARLVRNLLALRTVLCMDQMQTGRWSERIEELDQELAALGHDMKSTAATATESLRRTFLLPRLVKRRKRPAHRPAGRGVPQE
Ga0308175_1008833613	3300031938	Soil	VNEPTFPADRNDRLVRNLLALRMVLAMDQMQTGRWSERIEELDQELASLGHDMKSTAASAADGLRRSFLLPRLVNRRKRAAHRPSARATPLE
Ga0308174_106127592	3300031939	Soil	VNEPTFPADRNDRLVRNLLALRMVLAMDQMQTGRWSERIEELDQELASLGHDMKSTAASAADGLRRSFLLPRLVNRRKRAAHRPSARATPRE
Ga0310901_104287702	3300031940	Soil	VNHPSFPEDRKARLVHNLLALRRVLAMEQMQTGRCTERIQELDEELASLGHDMKSTAASATESLRRTFLLPRLVNRRKRVPHRSAVPQD
Ga0308176_108597471	3300031996	Soil	MLETREEKQAVNDTTLPEDRNERLVRNLLALRMVLAMDQMQTGRWSDRIEELDQELASLGHDMKSTAASAADGLRRSFLLPRLVNRRKRAVHRPSARAAPRE
Ga0308176_125312432	3300031996	Soil	MLGSREKKPAVNDTTAPEDRNERLVRNLLALRMVLAMDQMQTGRWSDRIEELDQELASLGHDMKSTAASAADGLRRSFLLPRLVNRRK
Ga0310903_104097472	3300032000	Soil	LTEVPSPEERKARLVRNLLALRRVLEADQMQSGRWSDRIEELDEELASLGHDMKSTLATAAESLRRTFLLPRLVKRRNRSTHRPSVRPTPRE
Ga0308173_102299032	3300032074	Soil	VNDTTHPEDRNERLVRNLLALRMVLAMDQMQTGRWSERIEELDQELATLGHDMKSTAASAADGLRRSFLLPRLVNRRKRAAHRPSARATPRE
Ga0308173_104321211	3300032074	Soil	MLEPTTDNDAVDDSSFPDDRNARLVRNLLALRSVLCMDQMQTGRWSERIEELDQELAALGHDMKSTAATATESLRRTFLLPRLVNRRKRSTHRRVVSQD
Ga0308173_110023991	3300032074	Soil	VTPSTPPSDAERNARLVRNLLALRMVLAMDQMQTGKWSERIEELDEELANLGHDMKSTAASAAEGLRRSVLLPRLAKRRVRANHRAATRAGS
Ga0308173_120516581	3300032074	Soil	MLEAREEKPTVNDTKLPDDHNERLVRNLLALRMVLAMDQMQTGRWSDRIEELDQELASLGHDMKSTAASAADGLRRSFLLPRLVNRRKRATHRPSARATPRE
Ga0315910_101318863	3300032144	Soil	MLTVTSKENHAVSHPSFPDDRNARLVRNLLALRRVLAMEQMQTGRWSERIEELDEELASLGHDMKSTAASATESLRRTFLVPRLVHRRKRAAHPAPDLALP
Ga0315910_105761521	3300032144	Soil	MRTSQVTDNHSTEERNARLVRNLLALRMVLALDQMQTGRWSERIEEIDQELATLGHDMKSTAACAAEGLRRTFLLPRLVNRRSRTHRPRTVPQD
Ga0315910_106371011	3300032144	Soil	VTNAAVRHGTLQAHGKLEASKENEPVDDTRFPEDRNARLVRNLLALRTVLAMDQMQTGRWSERIEEIDQELAVLGHDMKSTAATATESLRRTFLLPKLIRRKRAHRTGRILPQG
Ga0335085_121520362	3300032770	Soil	MLGVLRKGGEAMTDTSFPEDREARLVRNLLALRTVLTADQMQTGRCSERIEELDEELARLGHDMHSTVACALESLRRAFLLPRLVRRRTSEAPRPSARAVPRE
Ga0247829_117671322	3300033550	Soil	MLTGIETSPKNDTMNPDLEDRNARLVRNLMALRMVLAMDQMQTGKWSERIEEIDEELATLGHDMKSTAACAADGLRRTFLLPRLINRRSRAAHRLPARATPR
Ga0372943_0105719_609_917	3300034268	Soil	MLGIKRRERTVNDTTHPEDRNGRLVRNLLALRMVLAMDQMQTGRWSERIEELDQELATLGHDMKSTAASAADGLRRSFLLPRLVNRRKRAAHRPSARATPQE
Ga0372943_0712652_15_323	3300034268	Soil	MLWNRKEKTIVKDTTHSADHNERLVRNLLALRMVLAMDQMQTGRWSERIEELDQELASLGHDMKSTAASAADGLRRSFLLPRLVNRRKRAGHRPSARATPRE
Ga0372946_0035522_369_671	3300034384	Soil	MLRTLDESTQVTDAHTTEERNARLVRNLLALRMVLALDQMQTGRWSDRIEEIDEELATLGHDMKSTAACAADGLRRTFLLPRLVNRRSRAHRAKPVTPRD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters