NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F092658

Metagenome / Metatranscriptome Family F092658

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F092658
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 45 residues
Representative Sequence RLTAHPEGFLGLWRDLAGSEVEFPGEFLVKSGDSLDRFVQGRED
Number of Associated Samples 96
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 96.26 %
Associated GOLD sequencing projects 91
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (51.402 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland
(16.822 % of family members)
Environment Ontology (ENVO) Unclassified
(32.710 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(45.794 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.
1Ga0070709_107658322
2Ga0070731_104048161
3Ga0070733_102827421
4Ga0070764_106358401
5Ga0075018_102766452
6Ga0070765_1021894561
7Ga0073928_107591411
8Ga0099791_105717232
9Ga0102924_12039752
10Ga0116214_12406602
11Ga0116222_13807122
12Ga0116110_11821122
13Ga0116135_12361051
14Ga0116223_108849702
15Ga0134125_110737731
16Ga0136449_1013627302
17Ga0137389_114807022
18Ga0137374_100450551
19Ga0137361_107642831
20Ga0168317_10233351
21Ga0164304_110133461
22Ga0157378_122930802
23Ga0120135_11062662
24Ga0181539_11587452
25Ga0181518_101866592
26Ga0181517_106145261
27Ga0181529_104266371
28Ga0181535_106164541
29Ga0181535_106785172
30Ga0181526_102059693
31Ga0163163_105501683
32Ga0182013_104178431
33Ga0182012_102666813
34Ga0182012_106895531
35Ga0182024_113249042
36Ga0182030_110124821
37Ga0137418_102158684
38Ga0182034_106566831
39Ga0182037_108518501
40Ga0187848_103015192
41Ga0187847_101833083
42Ga0187847_105849992
43Ga0187847_107508692
44Ga0187778_105638382
45Ga0187876_11961072
46Ga0187873_13975241
47Ga0187874_102061852
48Ga0187874_102812092
49Ga0187889_103547501
50Ga0187857_102719511
51Ga0187875_101445901
52Ga0187875_104094361
53Ga0187883_100092591
54Ga0187855_101928151
55Ga0187855_107895562
56Ga0187859_106006341
57Ga0187858_104103941
58Ga0187772_114748611
59Ga0066662_124907881
60Ga0187852_11587031
61Ga0210399_106864732
62Ga0210404_103455322
63Ga0210387_105360562
64Ga0210383_105726761
65Ga0210384_106330652
66Ga0210391_101101973
67Ga0210391_101486271
68Ga0224544_10363831
69Ga0209333_12139362
70Ga0209447_100728901
71Ga0209693_100653571
72Ga0209167_102184623
73Ga0209579_107177701
74Ga0209380_103080072
75Ga0302144_100939432
76Ga0302219_104284361
77Ga0302219_104482031
78Ga0302231_102263782
79Ga0302227_102840012
80Ga0308309_112215522
81Ga0311369_112618722
82Ga0311359_107509111
83Ga0311340_105237081
84Ga0311348_109667441
85Ga0311344_113951692
86Ga0311355_108840961
87Ga0311356_114360551
88Ga0302314_118455732
89Ga0265721_10175631
90Ga0073994_119902782
91Ga0265754_10325101
92Ga0170834_1095637212
93Ga0302307_106024181
94Ga0302324_1001061836
95Ga0302324_1017115451
96Ga0302326_109308191
97Ga0265313_102878281
98Ga0307474_115106611
99Ga0306918_115603661
100Ga0348332_106875481
101Ga0335081_111897832
102Ga0335081_112817021
103Ga0335072_103579421
104Ga0335083_106127621
105Ga0335073_116150762
106Ga0326726_120719901
107Ga0316620_104029982
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 36.11%    β-sheet: 0.00%    Coil/Unstructured: 63.89%
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Variant

510152025303540RLTAHPEGFLGLWRDLAGSEVEFPGEFLVKSGDSLDRFVQGREDSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
51.4%48.6%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Peatland
Bog Forest Soil
Bog
Peatland
Iron-Sulfur Acid Spring
Watersheds
Soil
Vadose Zone Soil
Terrestrial Soil
Surface Soil
Peatlands Soil
Permafrost
Grasslands Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Soil
Tropical Peatland
Bog
Permafrost
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Fen
Palsa
Bog
Peat Soil
Plant Litter
Weathered Mine Tailings
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Rhizosphere
16.8%6.5%2.8%4.7%3.7%3.7%7.5%2.8%5.6%3.7%4.7%12.1%2.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0070709_1076583223300005434Corn, Switchgrass And Miscanthus RhizosphereQLTAHPEGFLGLWRDLADSDDGFPVEFLINSGESLQSFVQSREG*
Ga0070731_1040481613300005538Surface SoilLGLWRDLMSSPEAFPAESLVNSGDTLDSFVQGRED*
Ga0070733_1028274213300005541Surface SoilLTSHPEGFLGLWRDLAGSEGEFPGEFLVKSGDSLHGFVQGRED*
Ga0070764_1063584013300005712SoilFTHAAIGARLTTHPEGFLGLWRDLTGSAEAFPAELLVKSGDTLASFVQGRED*
Ga0075018_1027664523300006172WatershedsAAIGARLTSHPEGFLGLWRDMAGSAGEFPGEFLVKTGDTLGAFVQGRED*
Ga0070765_10218945613300006176SoilGARLTTHPEGFLGLWRDLTGSAEAFPAELLVKSGDTLASFVQGRED*
Ga0073928_1075914113300006893Iron-Sulfur Acid SpringSEFTHAAIGARLTAHPEGFLGLWRDLAGSEVEFPGEFLVKSGDSLDRFVQGRED*
Ga0099791_1057172323300007255Vadose Zone SoilAHPEGFQGLWRDLAGSEVEFPGEFLVKSGDSLDRFVQGRED*
Ga0102924_120397523300007982Iron-Sulfur Acid SpringLGLWRDLAGSVDRFPAEFLVKSQQSLQSFVEARED*
Ga0116214_124066023300009520Peatlands SoilFLGLWRDLAGSEGEFPGEFLVNSGDSLQGFVQGRED*
Ga0116222_138071223300009521Peatlands SoilHAAIGARLTAHPEGFLGLWRDLAGSEVEFPGEFLVKSGDSLDRFVQGRED*
Ga0116110_118211223300009643PeatlandHAAIGARLTAQPEGFLGLWRDLAGSEGEFPGEFLVKSGDSLHGFVQGQED*
Ga0116135_123610513300009665PeatlandLTTHPEGFLGLWRDLADSEAAFPGEFLVRSGDTLGAFVQGRED*
Ga0116223_1088497023300009839Peatlands SoilEFTHVAIGARLTSHPEGFLGLWRDLAGGEGEFPGEFLVKSGDTLGAFVQGRED*
Ga0134125_1107377313300010371Terrestrial SoilIGARLTSHPEGFLGLWRDLAGSDGQFPGEFLVKSGDSLHRFVQGRED*
Ga0136449_10136273023300010379Peatlands SoilIGARLTSHPEGFLGLWRDLAGSEGEYPGEFLVKSGDSLHGFVQGRED*
Ga0137389_1148070223300012096Vadose Zone SoilGFLGLWRDLAGSEGEFPGEFLVKSGDSLDRFVQGRED*
Ga0137374_1004505513300012204Vadose Zone SoilIGARLTAYPEGFLGLWRDLAGSEVEFPGEFLVKSGDSLDRFVQGRED*
Ga0137361_1076428313300012362Vadose Zone SoilHPEGFLGLWRDLAGSEVEFPGEFLVKSGDSLDRFVQGRED*
Ga0168317_102333513300012982Weathered Mine TailingsAHPEGFLGLWRDLAGSEGEFPREFLVKSGDSLDRFVQGRED*
Ga0164304_1101334613300012986SoilPEGFLGLWRDLAGSEDGFPVEFLINSGESLQSFVQSREG*
Ga0157378_1229308023300013297Miscanthus RhizosphereEFTHAALGAQLTTHPEGFLGLWRDLAGSEDGFPVEFLIKSGESLQSFVQSREE*
Ga0120135_110626623300014054PermafrostGFLGLWRDLAGSEGEFPGEFLVKSGDSLLGFVQGQED*
Ga0181539_115874523300014151BogFTHAAIGARLTAHPEGFLGLWRDLAGSEGEFPGEFLVKSGDSLHGFVQGQED*
Ga0181518_1018665923300014156BogAAIGARLTTHPEGFLGLWRDLMSTAAAFPSESLVKSGDTLDSFVQGRED*
Ga0181517_1061452613300014160BogHAAIGARLTTHPEGFLGLWRDLLSTAEAFPTEFLVKSGDTLDSFVQTRED*
Ga0181529_1042663713300014161BogTHAAIGARLTTHPEGFLGLWRDLMSTAAAFPAEFLVKSGDTLDSFVQGRED*
Ga0181535_1061645413300014199BogFTHAAIGARLTAHPEGFLGLWRDLAGSEVEFPREFLVKSGDSLDRFVQGRED*
Ga0181535_1067851723300014199BogFLGLWRDLAGSEGEFPGEFLVKSGDSLHGFVQGQED*
Ga0181526_1020596933300014200BogAAIGARLTTHPEGFLGLWRDLMSTAAAFPAEFLVESGDMLDSFIQGRED*
Ga0163163_1055016833300014325Switchgrass RhizosphereEFTHAALGAQLTAHPEGFLGLWRDLAGSEDGFPVEFLINSGESLQSFVQSREG*
Ga0182013_1041784313300014492BogRLTTHPEGFLGLWRDLTGSAGVFPAEFLVKSDDTLASFVQGRGD*
Ga0182012_1026668133300014499BogHAAIGARLTAHPEGFLGLWRDLAGSEVEFPGEFLVKSGDSLHGFVQGQED*
Ga0182012_1068955313300014499BogEGFLRLWRDLMSSPEAFPAEFLVNSGDTLDSFVQGRED*
Ga0182024_1132490423300014501PermafrostFLGLWRDLAGSEVEFPGEFLVKSGDSLDRFVQGRED*
Ga0182030_1101248213300014838BogHAAIGVRLTAHPEGFLGLWRDLAGSEVEFPGEFLVKSGDSLDRFVQGRED*
Ga0137418_1021586843300015241Vadose Zone SoilIGARLTSHAEGFLGLWRDLAGSEVEFPGEFLVKSGDSLHGFVQGRED*
Ga0182034_1065668313300016371SoilARLTAHPEGFLGLWRDLASSEAEFPVKFLVESGDTLGAFVQGRED
Ga0182037_1085185013300016404SoilHAAIGARLTAHPEGFLGLWRDLANSEAEFPTEFLVKSGDTLGAFVQGRED
Ga0187848_1030151923300017935PeatlandLTTHQEGFLGLWRDLTSSTGAFPGEFLVKSGDTLASFVQGRED
Ga0187847_1018330833300017948PeatlandLHPEGFLGLWRDLAGSEGEFPGEFLVKSGDTLGAFVQGRED
Ga0187847_1058499923300017948PeatlandPEGFLGLWRDLKSGPEVFPAEFLVNSGDTLDSFVQGRED
Ga0187847_1075086923300017948PeatlandHAAIGARLTAHPEGFLGLWRDLAGSEVEFPGEFLVKSGDSLDRFVQGRED
Ga0187778_1056383823300017961Tropical PeatlandEGFLGLWRDLAASDREFPGEFLVRSGDTLLSFVQAREE
Ga0187876_119610723300018003PeatlandAHPEGFLGLWRDLAGSEGEFPGEFLVKSGDSLDRFVQGRED
Ga0187873_139752413300018013PeatlandPEGFLGLWRDLAGSQMEFPAKFLIKSRESLQSFVQAEEG
Ga0187874_1020618523300018019PeatlandLGLWRDLAGSQMEFPAKFLIKSRESLQSFVQAEEG
Ga0187874_1028120923300018019PeatlandIGARLTTHPEGFLGLWRDMMSTAATFPSELLVKSSDTLDSFVQGRED
Ga0187889_1035475013300018023PeatlandSEFTHAAIGARLTTHPEGFLGLWRDLMSTAAAFPSEFLVKSDDTLDSFVQGRED
Ga0187857_1027195113300018026PeatlandFTHPAIGARLTAHREGFLGLWRDLAGSEVEFPGEFLVKSGDSLHGFVQGRED
Ga0187875_1014459013300018035PeatlandSEFTHAAIGARLTAHPEGFLGLWRDLAGSEVEFPGEFLVKSGDSLDRFVQGRED
Ga0187875_1040943613300018035PeatlandHPEGFLGLWRDLMSIAAAFPAEFLVKSDDTLDSFVQGRED
Ga0187883_1000925913300018037PeatlandIGARLTTHPEGFLGLWRDLMSTAAAFPSEFLVKSDDTLDSFVQGRED
Ga0187855_1019281513300018038PeatlandARLTTHPEGFLGLWRDLMSSPEGFPAELLVNSRDTLDSFVQGRED
Ga0187855_1078955623300018038PeatlandAIGARLTTHPEGFLGLWRDLTGSAEAFPAELLVKSGDTLASFVQGRED
Ga0187859_1060063413300018047PeatlandRLTAHPEGFLGLWRDLAGSEVEFPGEFLVKSGDSLDRFVQGRED
Ga0187858_1041039413300018057PeatlandPEGFLGLWRDLAGSEVEFPGEFLVKSDDSLDRFVQGRED
Ga0187772_1147486113300018085Tropical PeatlandTHAAIGARLTAHPEGFLGLWRDLAASNGEFPVEFLVRSGDTLQSFVQARED
Ga0066662_1249078813300018468Grasslands SoilQLIAHPEGFLGLWRDLAGSEDGFPVEFLINSGESLQSFVQAREG
Ga0187852_115870313300019082PeatlandPEGFLGLWRDLAGSEVEFPGEFLVKSGDSLHGFVQGRED
Ga0210399_1068647323300020581SoilEFTHAAIGARLTAHPEGFLGLWRDLAGSEVEFPGEFLVKSGDSLDRFVQGRED
Ga0210404_1034553223300021088SoilLGLWRDLAGSEVEFPGEFLVKSGDSLDRFVQGRED
Ga0210387_1053605623300021405SoilTHAAIGARLTAHPEGFLGLWRDLADSEAAFPGEFLVRSGDSLGAFVQGRED
Ga0210383_1057267613300021407SoilTSHPEGFLGLWRDVAGSEGEFPGEFLVKSGDTLGAFVQGRED
Ga0210384_1063306523300021432SoilARLTSHPEGFLGLWRDLAGSEGEFPGEFLVKSGDTLGAFVQGRED
Ga0210391_1011019733300021433SoilALGAQLTSHPEGFLGLWRDLAGSQMEFPAKFLIKSRESLQSFVEAEEG
Ga0210391_1014862713300021433SoilHPEGFLGLWRDLARSQIEFPAKFLIKSRESLQSFVQAEEG
Ga0224544_103638313300023250SoilGARLTSHPEGFLGLWRDLAGSEGAFPGEFLVKSGDSLHGFVQGRED
Ga0209333_121393623300027676Forest SoilEGFLGLWRDLAGSEVEVPGEFLVKSGDSLDRFVQGRED
Ga0209447_1007289013300027701Bog Forest SoilRLTAHPEGFLGLWRDLAGSEVEFPGEFLVKSGDSLHGFVQGQED
Ga0209693_1006535713300027855SoilTSHPEGFLGLWRDLAGSEGEFPGEFLVTSGDTLGAFVQGRED
Ga0209167_1021846233300027867Surface SoilARLTTHPEGFLGLWRDLMSSAEAFPAEFLANSGDTLDSFVQGRED
Ga0209579_1071777013300027869Surface SoilLGLWRDLMSSPEAFPAESLVNSGDTLDSFVQGRED
Ga0209380_1030800723300027889SoilFLGLWRDLADREAAFPGEFLVRSGDTLGAFVQGRED
Ga0302144_1009394323300028560BogARLTAHPEGFLGLWRDLAGSEGEFPGEFLVKSGDSLHGFVQGQED
Ga0302219_1042843613300028747PalsaEFTHAAIGARLTTHPEGFLGLWRDLTGSAEAFPAELLVKSGDTLASFVQGREN
Ga0302219_1044820313300028747PalsaGFLGLWRDLADSEAVFPAESLVKSGDTLGAFVQGRED
Ga0302231_1022637823300028775PalsaAAIGARLTAHPEGFLGLWRDLAGSEVEFPGEFLVKSGDSLDKFVQGRED
Ga0302227_1028400123300028795PalsaGFLGLWRDLAGSEVEFPGEFLVKSGDSLDRFVQGRED
Ga0308309_1122155223300028906SoilEFTHAAIGARLTTHPEGFLGLWRDLTGSADAFPAELLVKSGDTLASFVQGREN
Ga0311369_1126187223300029910PalsaPEGFLGLWRDLTGSAEAFPAELLVKSGDTLASFVQGRED
Ga0311359_1075091113300029914BogHAAIGARLTAHPEGFLGLWRDLADSEEVFPAEFLVKSGETLGAFVQGREE
Ga0311340_1052370813300029943PalsaTHPEGFLGLWRDLAGSEVEFPGEFLVKSGDSLDRFVQGRED
Ga0311348_1096674413300030019FenALGAQLTTHPEGYLGLWRDLTGSEGEFPVELLINSGESLRSFVHAREE
Ga0311344_1139516923300030020BogARLTAHPEGFLGLWRDLADSEEVFPAEFLVKSGETLGAFVQGREE
Ga0311355_1088409613300030580PalsaFLGMWRDLAGSDGVFPCEFLVNSDDTLQTFVHGRED
Ga0311356_1143605513300030617PalsaTAHPEGFLGLWRDLAGSEVEFPGEFLVKSGDSLDRFVQGRED
Ga0302314_1184557323300030906PalsaAIGARLTAHPEGFLGLWRDLAGSEVEFPGEFLVKSGDSLDRFVQGRED
Ga0265721_101756313300030977SoilAIGARLTTHPEGFLGLWRDLADSEAAFPGEFLVRSGDTLGAFVQGRED
Ga0073994_1199027823300030991SoilLTAHPEGFLGLWRDLAGSEVEFPGEFLVKSGDSLDRFVQGRED
Ga0265754_103251013300031040SoilHAEGFLGLWRDLAGSEGEFPGEFLVKSGDSLHGFVQGQED
Ga0170834_10956372123300031057Forest SoilGAQLTAHPEGLLGLWRDLAGSKNGFPVEFLINSGESLQSFVQAREG
Ga0302307_1060241813300031233PalsaAIGARLTAHPEGFLGMWRDLAGSDGVFPCEFLVNSDDTLQTFVHGRED
Ga0302324_10010618363300031236PalsaLGATLTAHPEGFLGLWRDLTGSEADFSVEYLITSGDSLRSFVHGREE
Ga0302324_10171154513300031236PalsaGFLGLWRDLADSEAAFPGEFLVRSGDTLGAFVQGRED
Ga0302326_1093081913300031525PalsaSEFTHAALGAQLTSHPEGFLGLWRELAGGQIEFPAKFLIESRESLRSFVQAQED
Ga0265313_1028782813300031595RhizosphereEGFLGLWRDLAGSEVEFPGEFLVKSGDSLDRFVQGRED
Ga0307474_1151066113300031718Hardwood Forest SoilFLGLWRDLADSEGNFPAEFLVKSGDTLGAFVQGRED
Ga0306918_1156036613300031744SoilTHAAIGARLTTHPEGFLGLWRDLMASCGEFPGEFLVRSGDTLQSFVQARED
Ga0348332_1068754813300032515Plant LitterAHAAIGARLTTHPEGFLGLWRDLTGSAEAFPAELLVKSGDTLASFVQGRED
Ga0335081_1118978323300032892SoilESEFTHAALGAQITTHREGFLGLWRDLTGSQGGFPVEFLMKSGESLRSFVQGREG
Ga0335081_1128170213300032892SoilTHAAIGARLTAHPEGFLGLWRDLANSEAEFPAEFLVKSGDTLGAFVQGRED
Ga0335072_1035794213300032898SoilEFTHAAIGAHLTAHPEGFLGLWRDLANSEAEFPTEFLVKSGDTLGAFVQGRED
Ga0335083_1061276213300032954SoilARLTAHPEGFLGLWRDLASSEAEFPVEFLVESGDTLGAFVQGRED
Ga0335073_1161507623300033134SoilTAHPEGFLGLWRDLAGSEGEFPGESLVESGDTLETFVQSRED
Ga0326726_1207199013300033433Peat SoilSEFTHAALGAQLTTHREGFLGLWRDLAESEGEFPVDLLINSGESLRSFVGVREG
Ga0316620_1040299823300033480SoilEFTHAALGAQLTTHPEGFLGMWRDLTGSEGEFPVEFLINSGESLRSFVGVREG


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