Metagenome / Metatranscriptome Family F092645

Basic Information
Family ID	F092645
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	45 residues
Representative Sequence	KRNPGRHAERDPLGAKRRAELSLRVGAVLPWIMVGNTVWRIKRRPV
Number of Associated Samples	101
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.93 %
% of genes near scaffold ends (potentially truncated)	79.44 %
% of genes from short scaffolds (< 2000 bps)	90.65 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Most Common Taxonomy
Group	Bacteria (58.879 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil (11.215 % of family members)
Environment Ontology (ENVO)	Unclassified (16.822 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.813 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.89% β-sheet: 0.00% Coil/Unstructured: 58.11%
Feature Viewer

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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF11741	AMIN	20.56
PF00575	S1	8.41
PF00912	Transgly	2.80
PF13808	DDE_Tnp_1_assoc	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0744	Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase	Cell wall/membrane/envelope biogenesis [M]	2.80
COG4953	Membrane carboxypeptidase/penicillin-binding protein PbpC	Cell wall/membrane/envelope biogenesis [M]	2.80
COG5009	Membrane carboxypeptidase/penicillin-binding protein	Cell wall/membrane/envelope biogenesis [M]	2.80

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.88 %
Unclassified	root	N/A	41.12 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.88 %
Unclassified	root	N/A	41.12 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.88 %
Unclassified	root	N/A	41.12 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	58.88 %
Unclassified	root	N/A	41.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.12 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	33.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.12 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	32.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.12 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	30.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.12 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	28.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.12 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	7.48 %
Bradyrhizobium valentinum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	7.48 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.80 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.12 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	7.48 %
Bradyrhizobium valentinum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	7.48 %
Bradyrhizobium sp. URHD0069	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	1.87 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.93 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908009\|FWIRA_GRAM18401BPSMQ	Not Available	502	Open in IMG/M
3300001081\|JGI12662J13196_1007266	All Organisms → cellular organisms → Bacteria → Proteobacteria	895	Open in IMG/M
3300001137\|JGI12637J13337_1026279	Not Available	526	Open in IMG/M
3300001160\|JGI12654J13325_1003004	All Organisms → cellular organisms → Bacteria → Proteobacteria	1044	Open in IMG/M
3300001661\|JGI12053J15887_10366620	Not Available	695	Open in IMG/M
3300001661\|JGI12053J15887_10517006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	570	Open in IMG/M
3300002886\|JGI25612J43240_1084455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	504	Open in IMG/M
3300002914\|JGI25617J43924_10310134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	544	Open in IMG/M
3300003369\|JGI24140J50213_10274769	Not Available	515	Open in IMG/M
3300004782\|Ga0062382_10393249	Not Available	651	Open in IMG/M
3300005327\|Ga0070658_10651509	All Organisms → cellular organisms → Bacteria → Proteobacteria	914	Open in IMG/M
3300005335\|Ga0070666_10423992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	958	Open in IMG/M
3300005336\|Ga0070680_101770029	Not Available	535	Open in IMG/M
3300005365\|Ga0070688_100545585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	881	Open in IMG/M
3300005436\|Ga0070713_102181968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	537	Open in IMG/M
3300005439\|Ga0070711_100240413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1416	Open in IMG/M
3300005456\|Ga0070678_100478363	All Organisms → cellular organisms → Bacteria → Proteobacteria	1095	Open in IMG/M
3300005458\|Ga0070681_11966187	Not Available	512	Open in IMG/M
3300005530\|Ga0070679_100396219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1327	Open in IMG/M
3300005538\|Ga0070731_10315716	All Organisms → cellular organisms → Bacteria → Proteobacteria	1038	Open in IMG/M
3300005555\|Ga0066692_10893323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	545	Open in IMG/M
3300005575\|Ga0066702_10037210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2540	Open in IMG/M
3300005618\|Ga0068864_100945278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	853	Open in IMG/M
3300005840\|Ga0068870_10048774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2231	Open in IMG/M
3300006041\|Ga0075023_100063552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1192	Open in IMG/M
3300006055\|Ga0097691_1047351	All Organisms → cellular organisms → Bacteria → Proteobacteria	1519	Open in IMG/M
3300006057\|Ga0075026_100127206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1289	Open in IMG/M
3300006172\|Ga0075018_10644215	Not Available	568	Open in IMG/M
3300006354\|Ga0075021_10069016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2065	Open in IMG/M
3300006354\|Ga0075021_10666932	Not Available	667	Open in IMG/M
3300006604\|Ga0074060_11976120	Not Available	802	Open in IMG/M
3300006606\|Ga0074062_12966250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	826	Open in IMG/M
3300006638\|Ga0075522_10004480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	9944	Open in IMG/M
3300006642\|Ga0075521_10550866	Not Available	567	Open in IMG/M
3300006642\|Ga0075521_10624876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	531	Open in IMG/M
3300006795\|Ga0075520_1184456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	893	Open in IMG/M
3300006796\|Ga0066665_10593675	All Organisms → cellular organisms → Bacteria → Proteobacteria	892	Open in IMG/M
3300006796\|Ga0066665_10845690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	716	Open in IMG/M
3300006893\|Ga0073928_10127640	All Organisms → cellular organisms → Bacteria → Proteobacteria	2085	Open in IMG/M
3300006894\|Ga0079215_11240435	Not Available	571	Open in IMG/M
3300009029\|Ga0066793_10671954	Not Available	589	Open in IMG/M
3300009174\|Ga0105241_10698272	All Organisms → cellular organisms → Bacteria → Proteobacteria	926	Open in IMG/M
3300009500\|Ga0116229_10474135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1038	Open in IMG/M
3300009500\|Ga0116229_10567584	All Organisms → cellular organisms → Bacteria → Proteobacteria	935	Open in IMG/M
3300009651\|Ga0105859_1038028	All Organisms → cellular organisms → Bacteria → Proteobacteria	1217	Open in IMG/M
3300009660\|Ga0105854_1181400	All Organisms → cellular organisms → Bacteria → Proteobacteria	692	Open in IMG/M
3300009662\|Ga0105856_1158582	All Organisms → cellular organisms → Bacteria → Proteobacteria	693	Open in IMG/M
3300009792\|Ga0126374_11301214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	587	Open in IMG/M
3300010326\|Ga0134065_10286663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	626	Open in IMG/M
3300010861\|Ga0126349_1290422	Not Available	582	Open in IMG/M
3300011269\|Ga0137392_10361269	All Organisms → cellular organisms → Bacteria → Proteobacteria	1203	Open in IMG/M
3300012074\|Ga0154001_1035203	Not Available	761	Open in IMG/M
3300012201\|Ga0137365_10942549	All Organisms → cellular organisms → Bacteria → Proteobacteria	628	Open in IMG/M
3300012202\|Ga0137363_10818960	All Organisms → cellular organisms → Bacteria → Proteobacteria	790	Open in IMG/M
3300012353\|Ga0137367_11226177	Not Available	500	Open in IMG/M
3300012582\|Ga0137358_10207353	All Organisms → cellular organisms → Bacteria → Proteobacteria	1337	Open in IMG/M
3300012898\|Ga0157293_10100682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	744	Open in IMG/M
3300012900\|Ga0157292_10177292	Not Available	698	Open in IMG/M
3300012909\|Ga0157290_10285346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	602	Open in IMG/M
3300012925\|Ga0137419_11162514	Not Available	645	Open in IMG/M
3300012977\|Ga0134087_10509828	Not Available	607	Open in IMG/M
3300012986\|Ga0164304_11149222	Not Available	624	Open in IMG/M
3300012987\|Ga0164307_10746723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	772	Open in IMG/M
3300013503\|Ga0120127_10013234	All Organisms → cellular organisms → Bacteria → Proteobacteria	1389	Open in IMG/M
3300014201\|Ga0181537_10815098	Not Available	633	Open in IMG/M
3300014492\|Ga0182013_10042257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3595	Open in IMG/M
3300015077\|Ga0173483_10533889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	632	Open in IMG/M
3300017947\|Ga0187785_10725951	Not Available	523	Open in IMG/M
3300018054\|Ga0184621_10109774	All Organisms → cellular organisms → Bacteria → Proteobacteria	981	Open in IMG/M
3300018066\|Ga0184617_1114572	Not Available	765	Open in IMG/M
3300018920\|Ga0190273_12098638	Not Available	527	Open in IMG/M
3300019377\|Ga0190264_11964050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	534	Open in IMG/M
3300020069\|Ga0197907_10764132	Not Available	519	Open in IMG/M
3300020580\|Ga0210403_11303939	Not Available	554	Open in IMG/M
3300020580\|Ga0210403_11353089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	541	Open in IMG/M
3300021477\|Ga0210398_10369771	All Organisms → cellular organisms → Bacteria → Proteobacteria	1169	Open in IMG/M
3300021478\|Ga0210402_11269858	Not Available	663	Open in IMG/M
3300022911\|Ga0247783_1132813	Not Available	693	Open in IMG/M
3300023272\|Ga0247760_1187079	Not Available	533	Open in IMG/M
3300025916\|Ga0207663_10172987	All Organisms → cellular organisms → Bacteria → Proteobacteria	1536	Open in IMG/M
3300025939\|Ga0207665_11416808	Not Available	553	Open in IMG/M
3300026220\|Ga0209855_1075920	Not Available	567	Open in IMG/M
3300026494\|Ga0257159_1001705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2914	Open in IMG/M
3300026498\|Ga0257156_1089566	All Organisms → cellular organisms → Bacteria → Proteobacteria	639	Open in IMG/M
3300026527\|Ga0209059_1222852	Not Available	633	Open in IMG/M
3300026551\|Ga0209648_10104617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2312	Open in IMG/M
3300027105\|Ga0207944_1003434	All Organisms → cellular organisms → Bacteria → Proteobacteria	1397	Open in IMG/M
3300027505\|Ga0209218_1031681	All Organisms → cellular organisms → Bacteria → Proteobacteria	1031	Open in IMG/M
3300027528\|Ga0208985_1029481	All Organisms → cellular organisms → Bacteria → Proteobacteria	1067	Open in IMG/M
3300027616\|Ga0209106_1122796	Not Available	582	Open in IMG/M
3300027635\|Ga0209625_1094810	Not Available	669	Open in IMG/M
3300027678\|Ga0209011_1206142	Not Available	534	Open in IMG/M
3300027783\|Ga0209448_10099891	All Organisms → cellular organisms → Bacteria → Proteobacteria	972	Open in IMG/M
3300027817\|Ga0209112_10087780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	993	Open in IMG/M
3300027862\|Ga0209701_10060295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2418	Open in IMG/M
3300027894\|Ga0209068_10109916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1463	Open in IMG/M
3300028733\|Ga0302261_1151200	Not Available	553	Open in IMG/M
3300028747\|Ga0302219_10445318	Not Available	508	Open in IMG/M
3300028874\|Ga0302155_10212325	Not Available	843	Open in IMG/M
3300029636\|Ga0222749_10707368	Not Available	551	Open in IMG/M
3300029944\|Ga0311352_11391353	Not Available	528	Open in IMG/M
3300030580\|Ga0311355_10121377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	2863	Open in IMG/M
3300031726\|Ga0302321_103064148	Not Available	545	Open in IMG/M
3300031795\|Ga0318557_10334925	All Organisms → cellular organisms → Bacteria → Proteobacteria	695	Open in IMG/M
3300032068\|Ga0318553_10749923	Not Available	511	Open in IMG/M
3300033513\|Ga0316628_103944274	Not Available	531	Open in IMG/M
3300034268\|Ga0372943_0573171	Not Available	740	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.59%
Host-Associated	Host-Associated	8.41%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.37%
Aquatic	Environmental → Aquatic	11.21%
Plants	Host-Associated → Plants	7.48%
Fungi	Host-Associated → Fungi	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.90%
Sediment	Environmental → Aquatic → Sediment	7.48%
Peat	Environmental → Terrestrial → Peat	5.61%
Freshwater	Environmental → Aquatic → Freshwater	2.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.80%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.87%
Peat Moss	Host-Associated → Plants → Peat Moss	1.87%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.93%
Mycelium	Host-Associated → Fungi → Mycelium	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.73%
Loam	Environmental → Terrestrial → Soil → Loam	18.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.48%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.61%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.80%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.87%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.87%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.87%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	1.87%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.93%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.93%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.21%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.35%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.48%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	6.54%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.61%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.87%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.87%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.93%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	11.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.48%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.54%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.61%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.67%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	3.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.80%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.80%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.87%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.87%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.87%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	1.87%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.93%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.93%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.93%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.93%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.93%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908009	Soil microbial communities from sample at FACE Site Metagenome WIR_Amb2	Environmental	Open in IMG/M
3300001081	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3	Environmental	Open in IMG/M
3300001137	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3	Environmental	Open in IMG/M
3300001160	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental	Open in IMG/M
3300004782	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009651	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063	Environmental	Open in IMG/M
3300009660	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-058	Environmental	Open in IMG/M
3300009662	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-060	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010861	Boreal forest soil eukaryotic communities from Alaska, USA - C4-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012074	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ085 MetaG	Host-Associated	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013503	Permafrost microbial communities from Nunavut, Canada - A23_5cm_12M	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022911	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L064-202C-5	Environmental	Open in IMG/M
3300023272	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L171-409R-4	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026220	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063 (SPAdes)	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027105	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF018 (SPAdes)	Environmental	Open in IMG/M
3300027505	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027528	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027817	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028733	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E2_4	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028874	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_1	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FWIRA_03043020	2124908009	Soil	RSERDPDGARRRAELPLRVVASLPWIMVGNTVWRIKRRPV
JGI12662J13196_10072661	3300001081	Forest Soil	DGPPDSGVRGRPKRNPGRHAERDPVGAIRRAELSLRVGAIVPWIMVGNTVWRIKRRPV*
JGI12637J13337_10262791	3300001137	Forest Soil	VRGRPKRNLRRRSEPDPDKARRRAELALRVGAILPWIMVGNTVWRIKRRPV*
JGI12654J13325_10030043	3300001160	Forest Soil	VRGRPKRNPGRHAERDPVGAIRRAELSLRVGAIVPWIMVGNTVWRIKRRPV*
JGI12053J15887_103666201	3300001661	Forest Soil	GEAKRRAELSLRIGVDLPWIMLGNTFWRIKRRPV*
JGI12053J15887_105170062	3300001661	Forest Soil	VRGRPKRNPGRRAERDRNGAKRRAELSLRIGAVLPWIMVGNTVWRIKRRPV*
JGI25612J43240_10844552	3300002886	Grasslands Soil	VRGRPKRNPGRRAERDPGEAKRRAELSLRIGAILNRIMVGNTVWRIKRRPV*
JGI25617J43924_103101342	3300002914	Grasslands Soil	VRGRPKRNPGRHAERDPVGAKRRAELSLRVGAVVPWIMVGNTVWRIKRRPV*
JGI24140J50213_102747692	3300003369	Arctic Peat Soil	DGPPDSGVRGRPKRNPGRRAERDPLGAKRRVELSLRVGAVVPWIMVGNTVWRIKRRPV*
Ga0062382_103932492	3300004782	Wetland Sediment	PGRRSERDPWGAKRRVELSPRVGAVVPWIMVGNTVWRIKRRPV*
Ga0070658_106515093	3300005327	Corn Rhizosphere	PGRVSGVRGRPKRDPERRTEHIPRRAKRRAELSLRIGAVPWWIMVGNTVWRIKRRPV*
Ga0070666_104239921	3300005335	Switchgrass Rhizosphere	VRGRPKRKPWRRAERGPTGTERRAKLSLRIGAIVSWVLVGNTVWRIKRRPV
Ga0070680_1017700292	3300005336	Corn Rhizosphere	VRGRPKRNPGRHAERDPVGAKRRAKLSLRVGAVPWIMVGNTVWRIKRRPV*
Ga0070688_1005455852	3300005365	Switchgrass Rhizosphere	VRGRPKRNPGRPCDRDPVAGRRPKLSLRIGAILAWVLVGISVWRIK
Ga0070713_1021819682	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VRGRPKRNPGRHAERNPVGAIRRAELSLRVGAVVPWIMVGNTVWRIKRRPV*
Ga0070711_1002404132	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VRGRPKRNPGRLAEPDDREGTRRAELSFRAAADTSRVLVGNTVWRIKRRPVWNTMATA
Ga0070678_1004783633	3300005456	Miscanthus Rhizosphere	VRGRPKRKPWRRAERGPTGAIRRAKLSLRFVAVAPLILVGNTVWRIKRRPV*
Ga0070681_119661872	3300005458	Corn Rhizosphere	RDGPPDSGVRGRPKRNPGRHAERDPVGAKRRAKLSLRVGAVPWIMVGNTVWRIKRRPV*
Ga0070679_1003962192	3300005530	Corn Rhizosphere	VRGRPKRNPGRPAERCAGTTRRRTELALRVGVIVAWLMVGNTVWRIKRRPV*
Ga0070731_103157161	3300005538	Surface Soil	VRGRPKRNPRRRAERYPVEAQRRAKLALSFGVLFPLVVGNTVWRIKSRPV*
Ga0066692_108933231	3300005555	Soil	VRGRPKRNPERRSERDPDEAKRRAKLPLRVGAILPWIMVGNTVWRIKRRPV*
Ga0066702_100372103	3300005575	Soil	SERDRCGAKRRAELSLRIGAVLRGIFVGITVWRIKRRPV*
Ga0068864_1009452782	3300005618	Switchgrass Rhizosphere	VKGRPKRNPERRSERDPDRAKRRAELPPRVGAILPWIMVGNTVWRIKRRPV*
Ga0068870_100487743	3300005840	Miscanthus Rhizosphere	TPGRRAERDPVGAKRRAELSLRGGAILPGIKVGNSVWRIKRRPV*
Ga0075023_1000635522	3300006041	Watersheds	VRGRPKRNPRRRAERDPGGAIRRAELSLPVGAILPWIIVGNTVWRIKRRPV*
Ga0097691_10473512	3300006055	Arctic Peat Soil	PGRRAERDPRRAKRRAELSLRVGAILPWILVGNTVWRIKRRPV*
Ga0075026_1001272062	3300006057	Watersheds	VRGRPKRNLQRLAERDPVDAIRRAEFSLRVGAIISWIMVGNTVWRIKRRPV*
Ga0075018_106442151	3300006172	Watersheds	KRNPGRRAERDRGAKHRGELSLRLGAVLTRITVGNTVWRIKRRPV*
Ga0075021_100690162	3300006354	Watersheds	VRGRPKRNLLRLAERDPVDAMRRAKFSLRVGAIISWIMVGNTVWRIKRRPV*
Ga0075021_106669321	3300006354	Watersheds	SGVRGRPKRNRERLADPDPQAARRRAEHWLRVGSLLPWIMVGITVWRIKRRPV*
Ga0074060_119761202	3300006604	Soil	VRGRPKRNPGRHAERDPLGAKRRAELSLRVGAVVPWIMVGNTVWRIKRRPV*
Ga0074062_129662502	3300006606	Soil	VRGRPKRKPWRRAERGSARAIRRVKLSLRSVAVVPRILIGNTVWRIKRRPV*
Ga0075522_100044807	3300006638	Arctic Peat Soil	MIRTEQWRVELSLRSVAVLPWILVGNTVWRIKRRPV*
Ga0075521_105508661	3300006642	Arctic Peat Soil	VRGRPKRNPGRLAERDPLGAKRRVELSLRVGAVVPWIMVGNTVWRIKRRPV*
Ga0075521_106248761	3300006642	Arctic Peat Soil	VRGRPKRNPGRRAERDPLGAKRRVELSLRIGAVVPWIMVGNTVWRIKRRPV*
Ga0075520_11844561	3300006795	Arctic Peat Soil	VRGRPKRNPGRRAERDPGGAKRRAELSLRVGAIFPWIMVGNT
Ga0066665_105936752	3300006796	Soil	VRGRPKRNPERRSERDPDEAKRRAKLPLRVRAILPWIMVGNTVWRIKRRPV*
Ga0066665_108456902	3300006796	Soil	VRGRPKRNPARRAERDRGAKQRVELSLRIGAILTRIMVGNTVWRIKRRPV*
Ga0073928_101276403	3300006893	Iron-Sulfur Acid Spring	GRRAERDLGGAKRRAELSLRVGAVVPWIIVDNTVWRIKRRPV*
Ga0079215_112404351	3300006894	Agricultural Soil	PGRRAERDPVGAKRRAELSLRGGAILPGILVGNTVWRIKRRPV*
Ga0066793_106719541	3300009029	Prmafrost Soil	PGRPAERNPGAKRRAELSLRFGAILPKIVGNTVWRIKRRPV*
Ga0105241_106982721	3300009174	Corn Rhizosphere	NPGRRAERDPATRRRAELSLRVGAIVAGILVGISVWRIKRRPV*
Ga0116229_104741351	3300009500	Host-Associated	VRGRPKRNHGRRAERDPVETERRAKLSLRIGGFIPWIVVGNTVWR
Ga0116229_105675842	3300009500	Host-Associated	RNHGRRAERDPVGTERRAELSLRIGAFIPWIVIGNTVWRIKRRPV*
Ga0105859_10380281	3300009651	Permafrost Soil	RNPGRRAERDPGAKHRAELSLRLGAVLTRITVGNTVWRIKRRPV*
Ga0105854_11814001	3300009660	Permafrost Soil	RDPLEAKRRVELSLRVGAVVSWIMVGNTVWRIKRRPV*
Ga0105856_11585821	3300009662	Permafrost Soil	SGVRGRPKRNPRRPAERDSGAALRRAELPLRVGAILSGITVGNTVWRIKRRPV*
Ga0126374_113012142	3300009792	Tropical Forest Soil	HAEWGLTGAMRRAMLSLRVGAIVPWILVGNTVWRIKRRPV*
Ga0134065_102866631	3300010326	Grasslands Soil	RRAERGPAGTRRRAKLSLRVGAIVPWILVGNTVWRIKRRPV*
Ga0126349_12904221	3300010861	Boreal Forest Soil	MDAKRRAELSLRIDAILPWIMVGNTVWRIKRRPVWNTLAAK
Ga0137392_103612692	3300011269	Vadose Zone Soil	PPDSGVRGRPKRNPGRHAERDPVGAKRRAELWLRVGAVVPWIMVGNTVWRIKRRPV*
Ga0154001_10352031	3300012074	Attine Ant Fungus Gardens	RGPAGAIRRAKLSLRIVAVVPRILVGNTVWRIKRRPV*
Ga0137365_109425491	3300012201	Vadose Zone Soil	SERDPDGAKRRAELPLRVGASLPWIMVGNTVWRIKRRPV*
Ga0137363_108189601	3300012202	Vadose Zone Soil	RNPERRSERDPDGAKRRAELPLRVVASLPWIMVGNTVWRIKRRPV*
Ga0137367_112261771	3300012353	Vadose Zone Soil	RDPGGATRRAELSTRFGVIIPWTMVGNTVWRIKRRPV*
Ga0137358_102073531	3300012582	Vadose Zone Soil	RDGPPDSGVRGRPKRNPERRSERDPDGARRRAELPLRLGAILPWIMVGNTVWRIKRRPV*
Ga0157293_101006821	3300012898	Soil	ERGATGTRRRAKLSLRVGAIVPWILVGNTVWRIKRRPV*
Ga0157292_101772921	3300012900	Soil	AERDPVGAKRRAKLSLRGGATLPWIMVGNTVWRIERRPV*
Ga0157290_102853461	3300012909	Soil	TTKARRRAKLSPRVGAIVPWILVGNTVWRIKRRPV*
Ga0137419_111625141	3300012925	Vadose Zone Soil	RDGPPDSGVRGRPKRNPGRRAERNREEAMRIGAMVPVIGVGNTVWRIKRRPV*
Ga0134087_105098281	3300012977	Grasslands Soil	RPKRNLERRSERDPDEAKRRAKLPLRVGAILPWIMVGNTVWRIKRRPV*
Ga0164304_111492221	3300012986	Soil	VKGRPKRNPERRSERDPDRAKRRTELPLRVGAILPWIMVGNTVWRIKRRPV*
Ga0164307_107467231	3300012987	Soil	LERRAEPLPTGTRRRAKLSPRVVAIVWGNLVGNTVWRIKRRPV*
Ga0120127_100132342	3300013503	Permafrost	RNPGRPAERDLTDAKRRAELSLRVGAILPWIWIGNTVWRIKRRPV*
Ga0181537_108150982	3300014201	Bog	PKRNMERRSERDAGEAERRAELSLRVGAVLPWILVGNTVWRIKRRPV*
Ga0182013_100422573	3300014492	Bog	GRPAERDPGAKRRAELSLRFGAILPKIVGNTVWRIKRRPV*
Ga0173483_105338891	3300015077	Soil	PKRNSWRRADRGPTGAVRRAKLSHRVGAIVPWILVGNTVWRIKRRPV*
Ga0187785_107259511	3300017947	Tropical Peatland	DFREEQRRVRIAARNGAILPGFVGNTVWRIKRRPV
Ga0184621_101097741	3300018054	Groundwater Sediment	DPDGAKRRAELPLRVGASLPWIMVGNKVWRIKRRPV
Ga0184617_11145721	3300018066	Groundwater Sediment	KRNPGRRAERDPGGANRRAELSPRIGAIVPWTMVGNTVWRIKRRPV
Ga0190273_120986382	3300018920	Soil	RRAERDPVEATRRAELSLRVGAIVSWIKVGNTVWRIKRRPV
Ga0190264_119640501	3300019377	Soil	RDPVGAKRRAELSLRGGAILPWIMIGNTVWRIKRRPV
Ga0197907_107641321	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	GKPKRNLGRPAEHDSRRTKRRAELLLRSGAVLPSILIGNTVWRIKRRPV
Ga0210403_113039391	3300020580	Soil	PKRDPERRSERDPDGARRRAELPLRVVASLPWIMVGNTVWRIKRRPV
Ga0210403_113530891	3300020580	Soil	KRNPGRRSERDPCGAKRRAELSLRVGAILPWILIGNTVWRIKRRPV
Ga0210398_103697711	3300021477	Soil	AERYPADAKRRAELSFRVAAILPWIMIGNIVWRIKRRPV
Ga0210402_112698581	3300021478	Soil	GFRGRPKRNPGAADPVARRRAEVLLRVGAIFSGIMVGNTVWRIKRRPV
Ga0247783_11328131	3300022911	Plant Litter	PRRRAERDPVGAKRRAELSLRGGAILPWIMVGNTVWRIERRPV
Ga0247760_11870791	3300023272	Plant Litter	EREPRVGRRAKLVLRIGAFWVSVGITVWRIKRRPV
Ga0207663_101729872	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	LMDAKRRAEISLRVGAILPWIMVGNTVWRIKRRPV
Ga0207665_114168081	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	ERDPGRAKRRAELSLRIGAALPWIMVGNNSVWRIKRRPV
Ga0209855_10759201	3300026220	Permafrost Soil	DPGAKHRAELSLRLGAVLTRITVGNTVWRIKRRPV
Ga0257159_10017053	3300026494	Soil	PDSGVRGRPKRNPGRRAERDPGAKHRAELSLRLGAVLTRITVGNTVWRIKRRPV
Ga0257156_10895661	3300026498	Soil	PDGAKRRAELPLRVVASLPWIMVGNTVWRIKRRPV
Ga0209059_12228522	3300026527	Soil	PSERDRCGAKRRAELSLRIGAVLRGIFVGITVWRIKRRPV
Ga0209648_101046171	3300026551	Grasslands Soil	DSGVRGRPKRNPGRRAERDPGAKRRAELSLRLGAVLTRIMVGNTVWRIKRRPV
Ga0207944_10034341	3300027105	Forest Soil	RDPVEAKRRAQFSLCVGAILRWIMVGNTVWRIKRRPV
Ga0209218_10316812	3300027505	Forest Soil	PGEAQRRAELSLRVGAVLPWILVGNTVWRIKRRPV
Ga0208985_10294812	3300027528	Forest Soil	NTGRRSERDAGEVARRAELSLRVGAVLPWIVVGNTVWRIKRRPV
Ga0209106_11227961	3300027616	Forest Soil	LAEREPGAKRRAELLLRIGAVVPQVMVGNTVWRIKRRPV
Ga0209625_10948101	3300027635	Forest Soil	ERDPVEAKRRAEFSLCVGAILPWIMVGNTVWRIKRRPV
Ga0209011_12061421	3300027678	Forest Soil	KRNPGRHAERDPLGAKRRAELSLRVGAVLPWIMVGNTVWRIKRRPV
Ga0209448_100998911	3300027783	Bog Forest Soil	DGPPDSGVRGRPKRNPGRLADRDPTDAKRRAEFSLRVGAILPRIMIGNTVWRIKRRPV
Ga0209112_100877801	3300027817	Forest Soil	GVRGRPKRNPGRRAERDLGEAKRRAELSLRVGAVVSWIIVGNTVWRIKRRPV
Ga0209701_100602951	3300027862	Vadose Zone Soil	NPERRSERDPDGAKPSAELPLRVGASLPWIMVGNTVWRIKRRPV
Ga0209068_101099162	3300027894	Watersheds	VRGRPKRNLLRLAERDPVDAMRRAKFSLRVGAIISWIMVGNTVWRIKRRPV
Ga0302261_11512001	3300028733	Fen	VRGRPKRNPGRRAERDPGEAKRRAELSLRIGAILNRIMVGNTVWRIKRRPV
Ga0302219_104453181	3300028747	Palsa	NPGANRRAELSLRVGAFLPWIIVGNTVWRIKRRPV
Ga0302155_102123252	3300028874	Bog	RNPGGAKRRAELSLRVGAVLPWIMVGNTVWRIKRRPV
Ga0222749_107073681	3300029636	Soil	KRNPGRPAERDSVGARRRAKLSLRVGAILPWIMVGFTVWRIKRRPV
Ga0311352_113913531	3300029944	Palsa	DSGVRGRPKRNPGRPAERDPIGASRAELSLRVGAVPWIMVGNTVWRIKRRPV
Ga0311355_101213771	3300030580	Palsa	RDLGGTRRRAELSLRVGAVLPWIIVGNTVWRIKRRPV
Ga0302321_1030641481	3300031726	Fen	EPDPCGARRRAELSLRIGAVIPWILVGNTVWRIKRRPV
Ga0318557_103349251	3300031795	Soil	PEPEADEATRRAEVSLRGDANCPSDLVGTVWRIKRRPV
Ga0318553_107499231	3300032068	Soil	PGDTKRRAERRLRIGAVFPGILVDNTVWRIKRRPV
Ga0316628_1039442741	3300033513	Soil	PMDEKRRAELSLRIGAFLPWILVGNTVWRIKRRPV
Ga0372943_0573171_632_739	3300034268	Soil	EPATRRRAELSLRVGAILGWVLVGISVWRIKRRPV

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092645

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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