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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F092640 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 107 |
| Average Sequence Length | 45 residues |
| Representative Sequence | GGLWEPGSRRWLVERRRIGPVIRALQRATDPLFRQAGLTLD |
| Number of Associated Samples | 88 |
| Number of Associated Scaffolds | 106 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 9.90 % |
| % of genes near scaffold ends (potentially truncated) | 78.50 % |
| % of genes from short scaffolds (< 2000 bps) | 85.05 % |
| Associated GOLD sequencing projects | 80 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.45 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (72.897 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.757 % of family members) |
| Environment Ontology (ENVO) | Unclassified (27.103 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (47.664 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 31.88% β-sheet: 8.70% Coil/Unstructured: 59.42% | Feature Viewer |
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| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.45 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 106 Family Scaffolds |
|---|---|---|
| PF05014 | Nuc_deoxyrib_tr | 4.72 |
| PF01724 | DUF29 | 4.72 |
| PF00118 | Cpn60_TCP1 | 2.83 |
| PF04796 | RepA_C | 2.83 |
| PF07040 | DUF1326 | 1.89 |
| PF05685 | Uma2 | 1.89 |
| PF00126 | HTH_1 | 0.94 |
| PF13365 | Trypsin_2 | 0.94 |
| PF07690 | MFS_1 | 0.94 |
| PF01526 | DDE_Tnp_Tn3 | 0.94 |
| PF00166 | Cpn10 | 0.94 |
| PF00239 | Resolvase | 0.94 |
| PF03372 | Exo_endo_phos | 0.94 |
| PF00589 | Phage_integrase | 0.94 |
| PF11154 | DUF2934 | 0.94 |
| PF02371 | Transposase_20 | 0.94 |
| PF00135 | COesterase | 0.94 |
| PF02696 | SelO | 0.94 |
| PF03060 | NMO | 0.94 |
| PF09557 | DUF2382 | 0.94 |
| PF11752 | DUF3309 | 0.94 |
| PF00072 | Response_reg | 0.94 |
| COG ID | Name | Functional Category | % Frequency in 106 Family Scaffolds |
|---|---|---|---|
| COG3613 | Nucleoside 2-deoxyribosyltransferase | Nucleotide transport and metabolism [F] | 4.72 |
| COG0459 | Chaperonin GroEL (HSP60 family) | Posttranslational modification, protein turnover, chaperones [O] | 2.83 |
| COG4636 | Endonuclease, Uma2 family (restriction endonuclease fold) | General function prediction only [R] | 1.89 |
| COG5588 | Uncharacterized conserved protein, DUF1326 domain | Function unknown [S] | 1.89 |
| COG0234 | Co-chaperonin GroES (HSP10) | Posttranslational modification, protein turnover, chaperones [O] | 0.94 |
| COG0397 | Protein adenylyltransferase (AMPylase) SelO/YdiU (selenoprotein O) | Posttranslational modification, protein turnover, chaperones [O] | 0.94 |
| COG0516 | IMP dehydrogenase/GMP reductase | Nucleotide transport and metabolism [F] | 0.94 |
| COG1961 | Site-specific DNA recombinase SpoIVCA/DNA invertase PinE | Replication, recombination and repair [L] | 0.94 |
| COG2070 | NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family | General function prediction only [R] | 0.94 |
| COG2272 | Carboxylesterase type B | Lipid transport and metabolism [I] | 0.94 |
| COG2452 | Predicted site-specific integrase-resolvase | Mobilome: prophages, transposons [X] | 0.94 |
| COG3547 | Transposase | Mobilome: prophages, transposons [X] | 0.94 |
| COG4644 | Transposase and inactivated derivatives, TnpA family | Mobilome: prophages, transposons [X] | 0.94 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 72.90 % |
| All Organisms | root | All Organisms | 27.10 % |
| Visualization |
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| Powered by ApexCharts |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 17.76% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 17.76% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 13.08% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 11.21% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 5.61% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 3.74% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 3.74% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 2.80% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 2.80% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 1.87% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 1.87% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 1.87% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 1.87% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.87% |
| Iron-Sulfur Acid Spring | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring | 0.93% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 0.93% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 0.93% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 0.93% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 0.93% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 0.93% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 0.93% |
| Plant Roots | Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots | 0.93% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.93% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.93% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere | 0.93% |
| Boreal Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil | 0.93% |
| Visualization |
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300004091 | Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004152 | Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3 | Environmental | Open in IMG/M |
| 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Environmental | Open in IMG/M |
| 3300005340 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG | Environmental | Open in IMG/M |
| 3300005353 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG | Host-Associated | Open in IMG/M |
| 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Environmental | Open in IMG/M |
| 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Environmental | Open in IMG/M |
| 3300005437 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG | Environmental | Open in IMG/M |
| 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Environmental | Open in IMG/M |
| 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Environmental | Open in IMG/M |
| 3300005542 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 | Environmental | Open in IMG/M |
| 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Host-Associated | Open in IMG/M |
| 3300005578 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 | Host-Associated | Open in IMG/M |
| 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Host-Associated | Open in IMG/M |
| 3300006052 | Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013 | Environmental | Open in IMG/M |
| 3300006172 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014 | Environmental | Open in IMG/M |
| 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Environmental | Open in IMG/M |
| 3300006881 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 | Host-Associated | Open in IMG/M |
| 3300006893 | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG | Environmental | Open in IMG/M |
| 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Host-Associated | Open in IMG/M |
| 3300010361 | Tropical forest soil microbial communities from Panama - MetaG Plot_23 | Environmental | Open in IMG/M |
| 3300010371 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1 | Environmental | Open in IMG/M |
| 3300010376 | Tropical forest soil microbial communities from Panama - MetaG Plot_28 | Environmental | Open in IMG/M |
| 3300010400 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 | Environmental | Open in IMG/M |
| 3300010876 | Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300012469 | Combined assembly of Soil carbon rhizosphere | Host-Associated | Open in IMG/M |
| 3300012955 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG | Environmental | Open in IMG/M |
| 3300012957 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG | Environmental | Open in IMG/M |
| 3300012960 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG | Environmental | Open in IMG/M |
| 3300012961 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG | Environmental | Open in IMG/M |
| 3300012984 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG | Environmental | Open in IMG/M |
| 3300012986 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG | Environmental | Open in IMG/M |
| 3300012988 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG | Environmental | Open in IMG/M |
| 3300012989 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG | Environmental | Open in IMG/M |
| 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Host-Associated | Open in IMG/M |
| 3300014497 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG | Host-Associated | Open in IMG/M |
| 3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
| 3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
| 3300016341 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 | Environmental | Open in IMG/M |
| 3300016371 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 | Environmental | Open in IMG/M |
| 3300016387 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 | Environmental | Open in IMG/M |
| 3300016445 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 | Environmental | Open in IMG/M |
| 3300018468 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111 | Environmental | Open in IMG/M |
| 3300018476 | Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T | Environmental | Open in IMG/M |
| 3300021384 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 | Host-Associated | Open in IMG/M |
| 3300021401 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O | Environmental | Open in IMG/M |
| 3300021474 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O | Environmental | Open in IMG/M |
| 3300021475 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O | Environmental | Open in IMG/M |
| 3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
| 3300022530 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022726 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300025898 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025905 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025906 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027795 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027824 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027905 | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes) | Environmental | Open in IMG/M |
| 3300028768 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119 | Environmental | Open in IMG/M |
| 3300028782 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193 | Environmental | Open in IMG/M |
| 3300028784 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121 | Environmental | Open in IMG/M |
| 3300028810 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151 | Environmental | Open in IMG/M |
| 3300031091 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031128 | Oak Summer Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031680 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22 | Environmental | Open in IMG/M |
| 3300031751 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24 | Environmental | Open in IMG/M |
| 3300031771 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19 | Environmental | Open in IMG/M |
| 3300031779 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22 | Environmental | Open in IMG/M |
| 3300031782 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20 | Environmental | Open in IMG/M |
| 3300031799 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21 | Environmental | Open in IMG/M |
| 3300031833 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178 | Environmental | Open in IMG/M |
| 3300031835 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21 | Environmental | Open in IMG/M |
| 3300031893 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28 | Environmental | Open in IMG/M |
| 3300031897 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16 | Environmental | Open in IMG/M |
| 3300031910 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2) | Environmental | Open in IMG/M |
| 3300031912 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2) | Environmental | Open in IMG/M |
| 3300031954 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2) | Environmental | Open in IMG/M |
| 3300032009 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19 | Environmental | Open in IMG/M |
| 3300032035 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170 | Environmental | Open in IMG/M |
| 3300032076 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2) | Environmental | Open in IMG/M |
| 3300032261 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2) | Environmental | Open in IMG/M |
| 3300032895 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| Ga0062387_1015218741 | 3300004091 | Bog Forest Soil | GGQREPGSRQWLIERRRIGPLVRNLRRDTDPLFRRVGIDLDQP* |
| Ga0062389_1017001822 | 3300004092 | Bog Forest Soil | PILKRAGGVWEPGSRRWLVERRRVGPVIRALERATDPLFRQAGLTPDHG* |
| Ga0062386_1016644552 | 3300004152 | Bog Forest Soil | LWEPGGRHWLIERRRVGPLVRNLRRVTDPLFRRVGISLGDG* |
| Ga0070682_1012793181 | 3300005337 | Corn Rhizosphere | MWDPGGRRWLIGRRRIGPLIHNLRRVTDPLFRHVGIDLDEL* |
| Ga0070689_1003098863 | 3300005340 | Switchgrass Rhizosphere | TWEPGSRRWLVQPHRLGPLQRALKRATDPLFRRAGIDLDGRDG* |
| Ga0070669_1012859401 | 3300005353 | Switchgrass Rhizosphere | APRELDPVFRRAGGTWDPGGRRWLLERRRLGPVIRALREVTDPLFRHAGLPLD* |
| Ga0070714_1002873822 | 3300005435 | Agricultural Soil | MMRQHGGEWDPGARRWLIERRRIGPVLRALWRDTDPLFRRAGMDLDG* |
| Ga0070714_1012208041 | 3300005435 | Agricultural Soil | RSAGGVWEPGARQWLIERRRIGPVIRELQRTVDPLFRLVGIGLDL* |
| Ga0070713_1015786061 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | ANIVLRAGGLWEPGSRRWLVERRRISPVIRALRRTDSLFRHAGMSLD* |
| Ga0070713_1021588961 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | RAGAVWEPGSRRWLVERRRIGPVIRALEAATDPLFRRVGIVLE* |
| Ga0070710_100628171 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | HLMRGAGGQWDPGNRHWLIERRRINPLVRALRRHTDPLFRQAGISLDEV* |
| Ga0070710_105674142 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | GGLWEPGSRRWLVERRRIGPVIRALQRATDPLFRQAGLTLD* |
| Ga0070711_1013722051 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | AGMMRQHGGEWDPGARRWLIERRRIGPVLRALWRDTDPLFRRAGMDLDG* |
| Ga0070711_1013996101 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | GGLREAGSHRWLIERRRVGRLVRELQRATDPLFRQAGIDLDEGNR* |
| Ga0070684_1009385161 | 3300005535 | Corn Rhizosphere | IRAPRELDPVFRRAGGAWDPGGRRWLLERRRLGPVIRALREVTDPLFRHAGLPLD* |
| Ga0070732_106821341 | 3300005542 | Surface Soil | MRAAGGLWEPGGRRWLIVRNRVGPLIRNLRRATDPLFRQAGIDLDG* |
| Ga0070665_1001698501 | 3300005548 | Switchgrass Rhizosphere | GVFRRAGGVWEPGSRRWLIERRRVGPVIRALRALTDPLFRRAGMPLD* |
| Ga0068854_1011881861 | 3300005578 | Corn Rhizosphere | MQKAGGQWEPGERRWLIELRRTGPLIRNLRRETDPLFRRAGMDLDGEDNR* |
| Ga0068856_1018887881 | 3300005614 | Corn Rhizosphere | PACRRPMGPGSRRWLVERRRIGPVIRELERATDPLFRQAGMTLD* |
| Ga0075029_1000674783 | 3300006052 | Watersheds | MRNAGGQWEAGSRRWLIERRRVGPVIRALQRQTDPLLRQAGIDLDGDD* |
| Ga0075018_107998762 | 3300006172 | Watersheds | RRAGGMWESGTGRWLVTRHRIGPVIRALERETDPLFRRAGMSLD* |
| Ga0070712_1004408111 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | DIVLRAGGQWEPGSRRWLVERRRIGPVIRALQRATDPLFRHAGMSLD* |
| Ga0068865_1001051935 | 3300006881 | Miscanthus Rhizosphere | MRKAGGMWDPGSRRWLIERRRINPLVRNLRRATDPLFRQAGVDLDGEAT* |
| Ga0073928_106920744 | 3300006893 | Iron-Sulfur Acid Spring | GLWEPGSRRWLIEHRRIGPVLRYLRRATDPLFRQAGISLDET* |
| Ga0105245_113872781 | 3300009098 | Miscanthus Rhizosphere | RRRAACGIPGSRRWLIERRRINPLVRNLRRATDPLFRQAGVDLDGEAT* |
| Ga0126378_113200801 | 3300010361 | Tropical Forest Soil | APLLQRAGAQWEPGSRRWLVERRRIGPVLRALRRRTDPLFRQAGVEIDED* |
| Ga0134125_130413941 | 3300010371 | Terrestrial Soil | MMRQHGGEWDPGARRWLIERRRIGPVLRALWRDTDPLFRRVGIDLDG* |
| Ga0126381_1003505152 | 3300010376 | Tropical Forest Soil | MRQVGALWEAGSRRWLVPRRRVNPLIRNLRRATDPLFRQAGIDLDEEGQGT* |
| Ga0126381_1020566264 | 3300010376 | Tropical Forest Soil | EKAGGVWEPGGRRWLIERRRIGPLIRNLRHITDPLFRKAGIDLDEG* |
| Ga0134122_105933823 | 3300010400 | Terrestrial Soil | VWEPGSRRWLLERRRFGPVIRTLRRVTDPLFRHAGLPLD* |
| Ga0126361_112131801 | 3300010876 | Boreal Forest Soil | MCRAGGQWEPGSRRWLIERRRIGPVVRALQRATDPLFRRAGLD |
| Ga0150984_1092523331 | 3300012469 | Avena Fatua Rhizosphere | GGVWEPGSRRWLVERRRIGPLIGALEAVTDPLFRRAGLVLE* |
| Ga0164298_112308041 | 3300012955 | Soil | RAGGMWEPGTRRWLIERRRIGPVLRHLRRITDPLFRQAGVSLDE* |
| Ga0164303_100231784 | 3300012957 | Soil | PGSRRWLIDRRRVGPVIRALERAADPLFRQAGMSLD* |
| Ga0164303_109183533 | 3300012957 | Soil | MRKAGGQWEPGSRRWLIERRRIVPVIRELRRDTDPLFRQAGVTLD |
| Ga0164301_111835402 | 3300012960 | Soil | ADLAPIMRRAGGMWEPGTRRWLIERRRIGPVLRHLRRITDPLFRQAGVSLDE* |
| Ga0164301_118071122 | 3300012960 | Soil | MRQHGGEWDPGARRWLIERRRIGPVLRALRRDTDPLFRQ |
| Ga0164302_109771301 | 3300012961 | Soil | MRKAGGQWEPGERRWLIELRRTGPLIRNLRRETDPLFRRAG |
| Ga0164309_119706041 | 3300012984 | Soil | VRRAGGVWEPGSRRWLVERRRIGPVIRALEAATDPLFRRAGLVLE* |
| Ga0164304_105727072 | 3300012986 | Soil | DYDAVMRKAGGQWEPGSRRWLIERRRINPVIRTLRRTVDPLFHHVGLILDA* |
| Ga0164306_117263142 | 3300012988 | Soil | VWEPGSRRWLVERRRGGPLIRALEAATDPLFRRAGLILE* |
| Ga0164305_105319742 | 3300012989 | Soil | MQRARGVWEPGSPSWLVDRRRVGPVIRALERETDPLFRQAGMSLD* |
| Ga0164305_113222292 | 3300012989 | Soil | VQRAGGVWEPGSRRWLVERRRGGPLIRALEAATDPLFRRAGLILE* |
| Ga0157378_103405852 | 3300013297 | Miscanthus Rhizosphere | MRKAGGMWDPGSRRWLIERRRINPLVRNLRRATDPLFRQVGMDLDGEDV* |
| Ga0157378_103405853 | 3300013297 | Miscanthus Rhizosphere | IPGSRRWLIERRRINPLVRNLRRATDPLFRQAGVDLDGEAT* |
| Ga0182008_109552673 | 3300014497 | Rhizosphere | VWEPGSRRWLIERRRIGPVIRYLRRTTDPLFRRAGLNLDEG* |
| Ga0132258_115054401 | 3300015371 | Arabidopsis Rhizosphere | MRHAGGVWEPGARQWLVERRRIGPVIRKLERTVDPLFR* |
| Ga0132255_1047807401 | 3300015374 | Arabidopsis Rhizosphere | PSDLDPLMRQAGGMWEPGGQRWLIGRRRIGPLIRNLRRVTDPLARRD* |
| Ga0182035_120205252 | 3300016341 | Soil | GGLWDPASRRWLIERRRIGPVFRALRRDTDPLFRQCRVS |
| Ga0182034_111437941 | 3300016371 | Soil | SDLVPPMQQAGGLWEVGSKRWLIRRRRLGPVIRKLRRATDPLFRHAGLSLDEPG |
| Ga0182040_111503242 | 3300016387 | Soil | MQRAGGLVGAGSRRWLIERYRIGPVLRALRRVTDPLFRQAGIDLDEP |
| Ga0182038_112070561 | 3300016445 | Soil | RRWLIECRRIGPVIRARRRRPDPLLRRAGLNLGEE |
| Ga0066662_112521382 | 3300018468 | Grasslands Soil | EPASRRWLIERRRIGPVIRKLERTTDPLFRRVGINLE |
| Ga0190274_114776462 | 3300018476 | Soil | PCAGGVWEPGSRRWLVERQRINPLIRNLRRATDPLFRRAGINLDA |
| Ga0213876_107446982 | 3300021384 | Plant Roots | GGMWDPGARRWLIERRRIGPVIRALERTTDPLFRQAGMDLDG |
| Ga0210393_115446712 | 3300021401 | Soil | MRNAGGQWEPGSRRWLIERRRIGPVIRTLERSVDPLFRAVGLTLE |
| Ga0210390_102377071 | 3300021474 | Soil | RAGAVWEPGSRRWLVQRRRIGPVIRALERATDPLFRQAGINLDGDD |
| Ga0210392_101529181 | 3300021475 | Soil | MSGMWEPGARLWCIEPRRIGPVLRQLRRATDPLFRQAGIDLDEG |
| Ga0210392_110494051 | 3300021475 | Soil | GGLWEPERRRWLIERWRINPLIRNLRRATDPLFRQAGIDLDER |
| Ga0126371_126288802 | 3300021560 | Tropical Forest Soil | WEPGSRRWLIERRRIGPVVRRLRAVTDPLFRQAGVVLD |
| Ga0242658_12286261 | 3300022530 | Soil | SDLDPWMRKAGGMWEPGGRRWLIHRRRIGPLIRNLRRNTDPLFRRAGIDLDEG |
| Ga0242654_104480131 | 3300022726 | Soil | MRKAGGLWEAGSRRWLIERRRINPLIRNLRRVTDPLFRRAGMSLDGEG |
| Ga0207692_108125022 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | DFDPAMRRAGGQWEPGTRRWLIEHRRIWPLIRTLQRTTDPLFRRAGMDLDDG |
| Ga0207685_108168771 | 3300025905 | Corn, Switchgrass And Miscanthus Rhizosphere | GGLWEPGSRRWLVERRRISPVIRALRRTDSLFRHAGMSLD |
| Ga0207685_108392632 | 3300025905 | Corn, Switchgrass And Miscanthus Rhizosphere | GVFRRAGGVWEPGSRRWLIERRRVGPVIRALRALTDPLFRRAGMPLD |
| Ga0207699_103214801 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | HGGEWDPGARRWLIERRRIGPVRRALRRDTDPLFRRTGMDLDG |
| Ga0207693_100359913 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | VRCPRDFDPAMRRAGGQWEPGTRRWLIEHRRIWPLIRTLQRTTDPLFRRAGMDLDGG |
| Ga0207693_102781001 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | GGQWEPGTRRWLIEQWRVGPLVRALRRSTDPLFRRAGIDLDQ |
| Ga0207700_117840013 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | GVREAGSRRWLIPRWRINPLLRELRRSTDPLFRQAGIDLDGEGNR |
| Ga0207664_110036962 | 3300025929 | Agricultural Soil | RSAGGVWEPGARQWLIERRRIGPVIRELQRTVDPLFRLVGIGLDL |
| Ga0207667_117577611 | 3300025949 | Corn Rhizosphere | MRRAGGVWEPGARQWLVERRRIGPVIRELERTTDPLF |
| Ga0207651_116196911 | 3300025960 | Switchgrass Rhizosphere | RELDPVFRRAGGAWDPGGRRWLLERRRLGPVIRALREVTDPLFRHAGLPLD |
| Ga0207702_117623702 | 3300026078 | Corn Rhizosphere | HPACRRPMGPGSRRWLVERRRIGPVIRELERATDPLFRQAGMTLD |
| Ga0209139_103265461 | 3300027795 | Bog Forest Soil | GGQREPGSRQWLIERRRIGPLVRNLRRDTDPLFRRVGIDLDQP |
| Ga0209040_100581094 | 3300027824 | Bog Forest Soil | VRRWLIERRRIGPLVRTLRRVTDPLFRRAGLNLDEG |
| Ga0209040_103242722 | 3300027824 | Bog Forest Soil | GSRRWLIERRRVGKLVRTLRRVTDPLFRRVGMDLDEQ |
| Ga0209415_109743192 | 3300027905 | Peatlands Soil | MQKAGGLWDPGGRRWLIGPQRMGPLIRNLRRSTDPLFRHAGLNLDG |
| Ga0307280_101309364 | 3300028768 | Soil | DLAPIMRRAGGMWEPGTRRWLIERRRIGPVLRHLRRITDPLFRQAGVSLDE |
| Ga0307280_102539163 | 3300028768 | Soil | EPGSRRWLIEPWRIGLVFRHLRRATDRLFRQAGMSLDE |
| Ga0307306_100087393 | 3300028782 | Soil | VRCPRELAHVMQRAGGVWEPGSRRWLIDRRRVGPVIRALERETDPLFRQAGMSLD |
| Ga0307306_101053724 | 3300028782 | Soil | LAPIMRRAGGMWEPGTRRWLIERRRIGPVLRHLRRITDPLFRQAGVSLDE |
| Ga0307282_100321003 | 3300028784 | Soil | LAHAMQRARGVWEPGSPSWLVDRRRVGPVIRALERETDPLFRQAGMSLD |
| Ga0307294_100353602 | 3300028810 | Soil | GGTWEPGSRRWLIERRRIGPVIRALRRTTDPLFRRTGVSLD |
| Ga0308201_100971301 | 3300031091 | Soil | GDPGSRRWRFKPRRIGAVIRDLRRTTDPLFRQAGISLYDA |
| Ga0170823_150543531 | 3300031128 | Forest Soil | AGGLWEPGSRRWLIELWRINPLIRDLRRVTDPLFRRAGMDLDGEGRK |
| Ga0318574_105792992 | 3300031680 | Soil | LQTGGLWEGGSRRWLIERRRINPLARKLRRVTDPLFRQAGIDLDGEGQGA |
| Ga0318494_108700051 | 3300031751 | Soil | MGAGARRVWLVERRRVGPMMRALERTTDPLFRNAGLSLDAP |
| Ga0318546_110557191 | 3300031771 | Soil | SRSVGQRAGGIWEPGSRRWLVERRRVGPLVRNLRRATDPLFRHAGLDLDEEGRAA |
| Ga0318566_103528661 | 3300031779 | Soil | PLVRKAGGTWEPGSQRWLVEQRRMGPLIRNLHRVTDPLFRQAGIDLNREGT |
| Ga0318552_103297234 | 3300031782 | Soil | LAPLVRQAGGEWEPGGKRWLVRRRRLGPLVRKLRRETDPLFRQAGVDLDESA |
| Ga0318565_100082294 | 3300031799 | Soil | EPGSRRWLIERRRIGPVIRALERDTDSLFRHTGLSLDE |
| Ga0318565_104898331 | 3300031799 | Soil | DLEPIVQRAGGIWEPGSRRWLVERRRVGPLVRNLRRATDPLFRHAGLDLDEEGRAA |
| Ga0310917_106207831 | 3300031833 | Soil | GAGARRVWLVERRRVGPMMRALERTTDPLFRNAGLSLDAP |
| Ga0318517_104659341 | 3300031835 | Soil | ELASKMRAAGGLWEPGSRRLIERRRIGPVIRALERDTDSLFRHTGLSLDE |
| Ga0318536_103866282 | 3300031893 | Soil | MWEPGSKRWLVERRRLGPLIRNLRRSTDPLFRQAGIDLDGEGI |
| Ga0318520_109541241 | 3300031897 | Soil | VMQRAGGLVGAGSRRWLIERYRIGPVLRALRRVTDPLFRQAGIDLDEP |
| Ga0306923_107125761 | 3300031910 | Soil | AAWEPGSRRWLIRPRRIGPLIRNLHRVTDPLFRRAGIDLDRER |
| Ga0306921_127202252 | 3300031912 | Soil | GTWEPGSRRWLVERRRLGPLIRNLRRSTDPLFRQAGIDLDGEGI |
| Ga0306926_123154402 | 3300031954 | Soil | DTGARQWMVEPRRIGPVIRALRRDTDPPFRQAGIDLDL |
| Ga0318563_102791421 | 3300032009 | Soil | LWDPGRRLWLVERRRAGPLMRRLEKATDPLFRQAELDLDR |
| Ga0310911_103950991 | 3300032035 | Soil | VQRAGGIWEPGSRRWLVERRRVGPLVRNLRRATDPLFRHAGLDLDEEGRAA |
| Ga0306924_104406945 | 3300032076 | Soil | GGLWEVGSRRWLIHRRRTGPLIRKLRWETDPLFCRAGLSLDEPG |
| Ga0306924_112536882 | 3300032076 | Soil | MGAGARRVWLVERRRVGPMMRALERTTDPLFRNAGL |
| Ga0306924_113014104 | 3300032076 | Soil | PADPEPLMQQSGGIWEPGSRRWLIHRGRIAPLIRALRATDPLFRHAGMDLDRIPP |
| Ga0306920_1036248872 | 3300032261 | Soil | PLMRQTGGEWDKGMQHWLVERRRIGPLVRTLRRTTDPLFRRAGVDLDEPQEPPTP |
| Ga0306920_1039184573 | 3300032261 | Soil | WEPGSRRWLIHRGRIEPLIRVLRCATDPLFRHAGIDLDRIPP |
| Ga0335074_101947634 | 3300032895 | Soil | MTALIRQAGGQWEPGGRRWLVERRRIGSLIRALRRTTDPLFRQAGVNLDG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |