NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F092639

Metagenome Family F092639

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F092639
Family Type Metagenome
Number of Sequences 107
Average Sequence Length 44 residues
Representative Sequence HPVTTTVQGRIQESRKSVVGKVRGGGPTVSVHTGSGDVQVD
Number of Associated Samples 99
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.93 %
% of genes near scaffold ends (potentially truncated) 99.07 %
% of genes from short scaffolds (< 2000 bps) 88.79 %
Associated GOLD sequencing projects 94
AlphaFold2 3D model prediction Yes
3D model pTM-score0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (89.720 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds
(12.149 % of family members)
Environment Ontology (ENVO) Unclassified
(21.495 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(39.252 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.
1JGI12637J13337_10137252
2JGI25383J37093_101144621
3JGIcombinedJ51221_102729672
4Ga0062385_101012611
5Ga0062389_1045315952
6Ga0070714_1002259401
7Ga0066703_106995972
8Ga0066702_100449034
9Ga0075028_1006740612
10Ga0075029_1003072871
11Ga0075029_1006242562
12Ga0075026_1005481112
13Ga0075017_1005127671
14Ga0075019_106629191
15Ga0075015_1000501684
16Ga0075030_1005273992
17Ga0075018_108457361
18Ga0075014_1006442442
19Ga0070765_1010729542
20Ga0075021_102885072
21Ga0075434_1006024421
22Ga0116214_13927892
23Ga0116218_15203671
24Ga0116125_10145004
25Ga0116115_11619411
26Ga0116117_11087271
27Ga0116134_11951412
28Ga0116134_11978841
29Ga0126382_103682402
30Ga0126373_100638463
31Ga0074046_100305051
32Ga0074045_100292721
33Ga0074045_106934271
34Ga0074044_106794881
35Ga0137382_105722822
36Ga0137399_103942511
37Ga0137390_113932111
38Ga0137390_117169571
39Ga0137397_106501122
40Ga0137413_113858382
41Ga0137416_114233691
42Ga0164304_112997561
43Ga0181524_103058872
44Ga0181521_102721841
45Ga0181530_102097442
46Ga0181530_103550402
47Ga0181523_103548472
48Ga0181535_107869751
49Ga0182015_102753192
50Ga0137412_106255912
51Ga0137412_110173702
52Ga0137403_101530071
53Ga0132258_115212001
54Ga0187801_101947832
55Ga0187817_107926751
56Ga0187822_100456921
57Ga0187874_102159851
58Ga0187885_104714791
59Ga0187863_100812551
60Ga0187766_101585701
61Ga0187773_100262143
62Ga0187770_112850792
63Ga0182022_12326342
64Ga0182031_14723451
65Ga0193735_10906822
66Ga0210403_104873973
67Ga0210399_114388982
68Ga0210390_104660471
69Ga0208323_10525032
70Ga0208455_10070256
71Ga0208188_10030891
72Ga0208848_10346261
73Ga0209687_10248003
74Ga0257167_10703901
75Ga0257177_10022531
76Ga0209806_12682031
77Ga0209805_14296991
78Ga0209730_10023851
79Ga0209076_10185853
80Ga0209076_10447541
81Ga0209117_11922361
82Ga0209655_102665171
83Ga0209698_106556982
84Ga0209069_108311931
85Ga0302149_10796601
86Ga0302202_105491701
87Ga0302189_100595821
88Ga0308309_111104212
89Ga0311361_105221781
90Ga0311336_119036542
91Ga0311353_102258351
92Ga0311370_115064922
93Ga0170822_110847501
94Ga0302307_106061551
95Ga0318561_100908102
96Ga0310686_1043790901
97Ga0307469_105158291
98Ga0307468_1021131681
99Ga0318497_104841901
100Ga0307473_107241742
101Ga0307473_111347332
102Ga0302322_1029739281
103Ga0307479_120221431
104Ga0318540_106064692
105Ga0307471_1000424351
106Ga0335071_108068542
107Ga0335072_105102563
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 17.39%    Coil/Unstructured: 82.61%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

510152025303540HPVTTTVQGRIQESRKSVVGKVRGGGPTVSVHTGSGDVQVDSequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.28
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
89.7%10.3%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Peatland
Bog Forest Soil
Bog
Peatland
Freshwater Sediment
Watersheds
Soil
Vadose Zone Soil
Tropical Forest Soil
Peatlands Soil
Arctic Peat Soil
Soil
Grasslands Soil
Soil
Forest Soil
Hardwood Forest Soil
Soil
Tropical Peatland
Bog Forest Soil
Fen
Bog
Palsa
Forest Soil
Soil
Agricultural Soil
Fen
Palsa
Bog
Arabidopsis Rhizosphere
Populus Rhizosphere
2.8%2.8%5.6%7.5%2.8%12.1%2.8%11.2%4.7%7.5%5.6%2.8%3.7%3.7%2.8%3.7%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12637J13337_101372523300001137Forest SoilGHPVTTTVQGRMQESRKSVVGKVRGGGPTVSVHTGSGDVQVD*
JGI25383J37093_1011446213300002560Grasslands SoilTSSGTIVVDEPVTTTVQGRVQESRRSISGKVRGGGPMIQVHTGSGNISIY*
JGIcombinedJ51221_1027296723300003505Forest SoilSGSVSVNHPVTTTIQGRVQDARKSIQGKVRGGGPEISVHTGSGDVRVD*
Ga0062385_1010126113300004080Bog Forest SoilGSVTLGHPVTTTIQGRVQETRKSVVGKVRGGGPVVSVHTGSGDVAVD*
Ga0062389_10453159523300004092Bog Forest SoilSSGTVSLGHPVTTTLQGQIQESRKSVIGKVRGGGPVVSVHTGSGDVQVE*
Ga0070714_10022594013300005435Agricultural SoilTSSGSVVVNHPVTTTVQGRVEDARKSIRGQVRGGGPEVSVHTGSGDVHVD*
Ga0066703_1069959723300005568SoilHPVTTTVQGRIQESRKSVVGKVRGGGPTVSVHTGSGDVQVD*
Ga0066702_1004490343300005575SoilTVQGRVEESRRRVEGKVHGGGPLVSVHTGSGDVHIY*
Ga0075028_10067406123300006050WatershedsLTTTIQGRVESPQKSVTGKVRGGGPSITVHTGSGDVRIR*
Ga0075029_10030728713300006052WatershedsTTTVQGRIQESRKSVVGKVRGGGPIVSVHTGSGDVRVD*
Ga0075029_10062425623300006052WatershedsSSGSVTMDHPVTTTIQGRVQESRKSIVGKVRGGGPTVSVHTGSGDIHVQ*
Ga0075026_10054811123300006057WatershedsPVTTTIQGRVEDSRKTIRGKVRGGGPEISVHTGSGDVHVD*
Ga0075017_10051276713300006059WatershedsTVQGRVQESRKSIVGKVRGGGPVISVHTGSGDIHVQ*
Ga0075019_1066291913300006086WatershedsSSGSVTLGHPVTTTVQGRIQETRKSVVGKVRGGGPTISVHTGSGDVAVD*
Ga0075015_10005016843300006102WatershedsPVTTTVQGRIQESRKSVVGKVRGGGPIVSVHTGSGDVRVD*
Ga0075030_10052739923300006162WatershedsGHPVTTTVQGRIQESRKSVVGKVRGGGPIVSVHTGSGDVRVD*
Ga0075018_1084573613300006172WatershedsSTTVQGRVNESRKSVVGKVRGGGPVISVHTGSGDVQVD*
Ga0075014_10064424423300006174WatershedsGSVTLGHPVTTTVQGRIQESRKSVVGKVRGGGPIVSVHTGSGDVRVD*
Ga0070765_10107295423300006176SoilTVQGRVQESRKSVVGKVRGGGPTISVHTGSGDISVD*
Ga0075021_1028850723300006354WatershedsDISTSSGSVTMDHPVTTTIQGRVQESRKSIVGKVRGGGPTISVHTRSGDIYVR*
Ga0075434_10060244213300006871Populus RhizosphereTMTVTGRIREHPRTVKGKVNGGGPLVSVETGSGDVQID*
Ga0116214_139278923300009520Peatlands SoilIEGRVRESRKSVVGKVRGGGPMVSVHTGSGNVQVD*
Ga0116218_152036713300009522Peatlands SoilDISSNSGTVTLGHPVTTTVQGRIQESRKSVVGKVHGGGPTVSVHTGSGDISVD*
Ga0116125_101450043300009628PeatlandSTNSGTVTLGHPVSTTVQGRIQESRKSVVGKVRGGGPMVSVHTSSGDVQVD*
Ga0116115_116194113300009631PeatlandVQGRIQDSKKSVVGKVRGGGPTVSVHTGSGDVQVD*
Ga0116117_110872713300009635PeatlandVDVSSSSGTVTLGHPVTTTVQGRIQEMKKSVVGKVLGGGPMISVHTGSGDVAVD*
Ga0116134_119514123300009764PeatlandSGNVTVGHPVTTTVQGRVEESRKSVVGKVRGGGPTISVHTGSGDVQVD*
Ga0116134_119788413300009764PeatlandVTLGHPVTTTIQGRVRESRKSVVGKVRGGGPMVSVHTSSGNVQVD*
Ga0126382_1036824023300010047Tropical Forest SoilSGSVEVGHPVTTTIQGRVQEERKSIRGRVNGGGPEISVHTGSGDIRVD*
Ga0126373_1006384633300010048Tropical Forest SoilTSSGSIVVSPAVTTTVQGRVEDSRKMIRGKVRGGGPEIAVHTGSGDIRID*
Ga0074046_1003050513300010339Bog Forest SoilDAAFDVDISSNSGNVTLGHPVPTTVQGRIQEWRPRAGGKGRGGGPTVSVHTGSGDVQVD*
Ga0074045_1002927213300010341Bog Forest SoilDVSTNSGTVTLGHPVSTTVQGRIQESRKSVVGKVRGGGPMVSVHTSSGDVQVD*
Ga0074045_1069342713300010341Bog Forest SoilVTLGHPVNTTVQGRIQESKKSVVGKVRGGGPIVSVHTGSGDVQVD*
Ga0074044_1067948813300010343Bog Forest SoilVTLGHPVTTTVQGRIQESRKSVVGKVRGGGPVVSVHTGSGDVQVD*
Ga0137382_1057228223300012200Vadose Zone SoilISSNSGTVVVDHPVTTTVQGRVQEERKSVVGKVRNGGPTISVHTGSGDIRLD*
Ga0137399_1039425113300012203Vadose Zone SoilTTVQGRVQERKSVVGKVRNGGPTISVHTGSGDIRLD*
Ga0137390_1139321113300012363Vadose Zone SoilNSGTVTLGHPVQTTVQGRIQESRKSVVGKVRGGGPVVSVHTGSGDVQVD*
Ga0137390_1171695713300012363Vadose Zone SoilISSNSGTVVVDHPVTTTVQGRVQEERKSVVGKVHNGGPTISVHTGSGDIRVD*
Ga0137397_1065011223300012685Vadose Zone SoilSGNATIDHPVTTTIQGKVQEGHKTVTGKVRGGGPLLSVRTGSGDVHVD*
Ga0137413_1138583823300012924Vadose Zone SoilTTVQGRIQESRKSVVGKVRGGGPVVSVHTGSGNISVD*
Ga0137416_1142336913300012927Vadose Zone SoilTVQGRIQESRKSVVGKARAGGPTVSVHTGSGDVQVD*
Ga0164304_1129975613300012986SoilPVTTTVQGRVEEAHKQIRGKVRGGGPEISVHTGSGDVRVD*
Ga0181524_1030588723300014155BogVTVGHPVTTTVQGRVEESRKSVVGKVRGGGPTISVHTGSGDVQVD*
Ga0181521_1027218413300014158BogTTTVQGRIQDSKKSVVGKVRGGGPTVSVHTGSGDVQVD*
Ga0181530_1020974423300014159BogGHPVTTTIEGRVRESRKSVVGKVHGGGPLISVHTGSGDVQVD*
Ga0181530_1035504023300014159BogGHPVTTTIEGRVRESRKSVVGKVHGGGPLISVHTGSGDVQVN*
Ga0181523_1035484723300014165BogVQGRIQESRKSVVGKVRGGGPMISVHTGSGDIQVD*
Ga0181535_1078697513300014199BogLGHPVNTTVQGRIQESKKSVVGKVRGGGPAVSVHTGSGDVAVD*
Ga0182015_1027531923300014495PalsaGHPVTTTVQGRVQESRKSVVGKVGNGGPIVSVHTGSGDVRVD*
Ga0137412_1062559123300015242Vadose Zone SoilEVRHPVTTTIQGRVQEERKSIRGKVNGGGPEISVHTGSGDVRVD*
Ga0137412_1101737023300015242Vadose Zone SoilVTLGHPVATTVQGRIQESRKSVVGKVRGGGPVVSVHTGSGNISVD*
Ga0137403_1015300713300015264Vadose Zone SoilSGTVVVDHPVTTTVQGRVQEERKSVVGKVRNGGPTISVHTGSGDIRLD*
Ga0132258_1152120013300015371Arabidopsis RhizosphereNVDHPLTTTIQGRLESPNKHVSGKVRGGGPMITVHTGSGDVQIR*
Ga0187801_1019478323300017933Freshwater SedimentDVDISSSSGTVTLAHPVTTTLQRRIQESRKSVIGKVRGGGPIVSVHTGSGDVAVD
Ga0187817_1079267513300017955Freshwater SedimentTVTLGHPVTATVQGRIQESRKSVVGKVRGGGPMISVHTGSGDIQVD
Ga0187822_1004569213300017994Freshwater SedimentVATTVQGRVTDSRKSVRGKVRNGGPEVTVHTGSGNIRID
Ga0187874_1021598513300018019PeatlandTTVQGRIQESRKSVVGKVHGGGPTISVHTGSGDVQVD
Ga0187885_1047147913300018025PeatlandVSSSSGSVTMGHPVTTTVQGRIQESRKSVVGKVHGGGPMISVHTGSGNVRVE
Ga0187863_1008125513300018034PeatlandNSGSVTLGHPVSTTVQGRIQESRKSVVGKVRGGGPMISVHTGSGEVRVE
Ga0187766_1015857013300018058Tropical PeatlandHPVTTTVQGRIQESHKSVVGKVRGGGPTISVHTGSGDIQVD
Ga0187773_1002621433300018064Tropical PeatlandSSSSGSVTMGHPVTTTIQGRVQETRKSVVGKVRGGGPTVSVHTGSGDIHVD
Ga0187770_1128507923300018090Tropical PeatlandLGHPVTTTVEGRVRESRKSVVGKVRGGGPMISVHTGSGNIQVD
Ga0182022_123263423300019785FenVTTTIQGRIQDSKKSVVGKVRGGGPVLSVHTGSGDVQVD
Ga0182031_147234513300019787BogVNLQLPADAAFDADISSSSGSVTLGHPVTTTVQGRVQESRKSVVGKVRGGGPVVSVHTG
Ga0193735_109068223300020006SoilTTTIQGRVEDAHKTIRGKVRGGGPEISVHTGSGDVHVD
Ga0210403_1048739733300020580SoilDVDISSSSGNVTLGHPVSTTVQGRVQEARKSVVGKVRGGGPPMVSVHTGSGNIALD
Ga0210399_1143889823300020581SoilTVTLGHPVTTTVQGRIQESRKSVVGKVRGGGPTVSVHTGSGDVQVD
Ga0210390_1046604713300021474SoilSTSSGSVTLGHPVTTTVQGRIDESRKSVIGKVHGGGPVVSVPTGSGDVQVD
Ga0208323_105250323300025439PeatlandTVQGRIQDSKKSVVGKVRGGGPTVSVHTGSGDVQVD
Ga0208455_100702563300025453PeatlandVQGRIQDSKKSVVGKVRGGGPTVSVHTGSGDVQVD
Ga0208188_100308913300025507PeatlandTVQGRVEESRKSVVGKVRGGGPMISVHTGSGDVQVD
Ga0208848_103462613300025509Arctic Peat SoilNSGTVTLGHAVTTTVQGRIQESRKSVVGKVRGGGPTISVHTGSGDVQVD
Ga0209687_102480033300026322SoilSGTVVLDKPVTTTVQGRVEESRRRIEGKVHGGGPLVSVHTGSGDVHIY
Ga0257167_107039013300026376SoilTVQGRIQESRKSVVGKVRGGGPTVSVHTGSGDVQVD
Ga0257177_100225313300026480SoilLGHPVQTTVQGRIQESRKSVVGKVRGGGPVVSVHTGSGDVQVD
Ga0209806_126820313300026529SoilHPVTTTVQGRIQESRKSVVGKVRGGGPTVSVHTGSGDVQVD
Ga0209805_142969913300026542SoilGTVTLGHPVTTTVQGRIQESRKSVVGKVRGGGPTVSVHTGSGDVQVD
Ga0209730_100238513300027034Forest SoilSGSVSVNHPVTTTIQGRIEESRKSIRGKVRGGGPEISVHTGSGDVRVD
Ga0209076_101858533300027643Vadose Zone SoilGSIVVGQPVTTTIQGRVEDAHKTIRGKVRGGGPEIAVHTGSGDIRID
Ga0209076_104475413300027643Vadose Zone SoilTLGHPVTTTVQGRIQESRKSVVGKVRGGGPTVSVHTGSGDVQVD
Ga0209117_119223613300027645Forest SoilSSGSVTLGHPVTTTVQGRIQESRKSVVGKVRGGGPTVSVHTGSGDVQVD
Ga0209655_1026651713300027767Bog Forest SoilVGHPVTTTIQGRIQESRKSVIGKVLGGGPVISVHTGSGDIQVN
Ga0209698_1065569823300027911WatershedsTTTVQGRIQESRKSVVGKVRGGGPIISVHTGSGDVRVD
Ga0209069_1083119313300027915WatershedsVTTTVQGRIQETRKSVVGKVRGGGPTISVHTGSGDVAVD
Ga0302149_107966013300028552BogSSSGSVNMGHPVSTTVQGRIEESRKSVVGKVRGGGPMISVHTGSGDVAVN
Ga0302202_1054917013300028762BogDISSSSGSVNMGHPVSTTVQGRIEESRKSVVGKVRGGGPMISVHTGSGDVAVN
Ga0302189_1005958213300028788BogTTVQGRIEESRKSVVGKVRGGGPMISVHTGSGDVAVN
Ga0308309_1111042123300028906SoilGSVTLGHPVTTTVQGRIDESRKSVIGKVHGGGPVVSVHTGSGDVQVD
Ga0311361_1052217813300029911BogSSGSVTMGHPVSTTVQGRIEETRKSVVGKVRGGGPTISVHTGSGDVAVD
Ga0311336_1190365423300029990FenNSGTVTLGHPVTTTVQGRIQESRKSVVGKVRGGGPTVSVHTGSGDVQVD
Ga0311353_1022583513300030399PalsaVQGRVPESRKSVVGKVGSGGPIVSVHTGSGDVRVD
Ga0311370_1150649223300030503PalsaLGHPVATTVQGRVPESRKSVVGKVGSGGPIVSVHTGSGDVRVD
Ga0170822_1108475013300031122Forest SoilTTVQGRIQESRKSVVGKVRGGGPVVSVHTGSGNISVD
Ga0302307_1060615513300031233PalsaTVQGRVPESRKSVVGKVGSGGPIVSVHTGSGDVRVD
Ga0318561_1009081023300031679SoilLEVNHPVTTTVQGRVTDSRKSVRGKVRSGGPEVTVHTGSGNIRID
Ga0310686_10437909013300031708SoilNSGSVTLGHPVTTTVQGRVGESRKSVVGKVRGGGPTVSVHTGSGDVQVD
Ga0307469_1051582913300031720Hardwood Forest SoilVDHPVTTTVQGRVQEERKSVVGKVRNGGPTISVHTGSGDIRLD
Ga0307468_10211316813300031740Hardwood Forest SoilPVTTTVQGRVQETHKSIRGKVHGGGPEISVHTGSGDVHVD
Ga0318497_1048419013300031805SoilSSGNLEVNHPVTTTVQGRVTDSRKSVRGKVRSGGPEVTVHTGSGNIRID
Ga0307473_1072417423300031820Hardwood Forest SoilTTTVQGRVEDSRKSIRGKVRGGGPEISVHTGSGDVHVD
Ga0307473_1113473323300031820Hardwood Forest SoilPVTTTVQGRVEEAHKSIRGKVRGGGPEISVHTGSGDVRVD
Ga0302322_10297392813300031902FenTVVVEHPVTTTVQGRVQERKSVVGKVLNGGPTISVHTGSGDIRVD
Ga0307479_1202214313300031962Hardwood Forest SoilVTTTVQGRVEDSRKMIRGKVHGGGPEIAVHTGSGDIRID
Ga0318540_1060646923300032094SoilNLEVNHPVTTTVQGRVTDSRKSVRGKVRSGGPEVTVHTGSGNIRID
Ga0307471_10004243513300032180Hardwood Forest SoilIQGRVQEERKSIRGKVNGGGPEISVHTGSGDVRVD
Ga0335071_1080685423300032897SoilTIQGRVQESRKSVVGKVRGGGPTVSVHTGSGDVTVE
Ga0335072_1051025633300032898SoilVTATIQGHVSESRKSVVGKVRGGGPTISVHTGSGDISVE


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.