Basic Information | |
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Family ID | F092628 |
Family Type | Metagenome |
Number of Sequences | 107 |
Average Sequence Length | 46 residues |
Representative Sequence | MRTVNNGTMRGTRVGAGPAGEPYGRGFAVAKVVVLYHCANKHQTLV |
Number of Associated Samples | 96 |
Number of Associated Scaffolds | 107 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 100.00 % |
% of genes near scaffold ends (potentially truncated) | 0.93 % |
% of genes from short scaffolds (< 2000 bps) | 0.93 % |
Associated GOLD sequencing projects | 85 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.24 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (100.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (13.084 % of family members) |
Environment Ontology (ENVO) | Unclassified (17.757 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (45.794 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 21.62% β-sheet: 0.00% Coil/Unstructured: 78.38% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.24 |
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Visualization |
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Peatland Bog Forest Soil Freshwater Sediment Watersheds Soil Vadose Zone Soil Grass Soil Surface Soil Peatlands Soil Agricultural Soil Arctic Peat Soil Soil Grass Soil Soil Hardwood Forest Soil Bog Forest Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Palsa Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
F62_00436470 | 2170459010 | Grass Soil | MRTANNGTMRGTRVGAGPAGEPYGRGFAVAKVVVL |
FD1_07775870 | 2170459024 | Grass Soil | MEAFMRTVNNGIMQGTRVGAGPAGEPIGRGIAVARVVVLYHCANKHQTLVPFIWTVTPPSQW |
JGI1027J12803_1008233092 | 3300000955 | Soil | MRTVNSGTMRGTRVGAGPAGEPYGRGVTVAKVVVLYHCANKHQTLVPFIWT |
JGI12635J15846_106875392 | 3300001593 | Forest Soil | MRTANHGTVRGTRVGAGPAREPNGRGSAVAKAVVLYYCASRHRTTVP |
Ga0062384_1002794202 | 3300004082 | Bog Forest Soil | MRTVHNGALRAKRVGAGPAGEPPGRELTVARIGVLYHCANKHQTLVPF |
Ga0062389_1039515381 | 3300004092 | Bog Forest Soil | MRTANHGTMQGTRVGAGPVSDPYGRGFTVAKVVVLYHCASGHRTTVP |
Ga0070674_1019005661 | 3300005356 | Miscanthus Rhizosphere | MRTVNNGIMQGTRVGAGPAGEPYGRGTAVAKVVVLYHCANKHQTLVPFIWTA |
Ga0070709_101083286 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | MRTVNNGIMQGTRVGAGPAGEPIGRGIAVARVVVLYHCANKHQT |
Ga0070714_1007332163 | 3300005435 | Agricultural Soil | MRTVNTGTMKGTRVGAGPAGEPIGRGIAVARVVVLYHCANKHQT |
Ga0070713_1009526571 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | MRAAKNGTMRGTRAGAGPAGEPDGHGFTVAKVVVLYHCAN |
Ga0070706_1002708984 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | MRTVNNGIMRGTRVGAGPAGEPYGREFPVAKVVVLYHCANKHQTVVPFIWTASPP |
Ga0070704_1014626912 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | MRISNNGIMQGTRVGAGPAGEPYDRGSTVAKIVVIYHCANKHQTLVPFIW |
Ga0068855_1007675473 | 3300005563 | Corn Rhizosphere | MRISNNGIMQGTRVGAGPAGEPYDRGSTVAKVVVIYHCANKHQTLVPFIWTA |
Ga0070761_104085903 | 3300005591 | Soil | MRTVNSGPLQATRVGAGPAGEPYDRGLPVGKIAVLYHCANQHQTLIPFICTVTPPL |
Ga0070763_108878292 | 3300005610 | Soil | MRTVSNGAIRGTRVGAGPAGDPYGRGFAVAKIVVHYHCANEHQTVVPFIGTV |
Ga0070764_105417922 | 3300005712 | Soil | MRTANHGAMRGTRVGAGPVGEPYGRGLAVDKVVVL |
Ga0070764_105987751 | 3300005712 | Soil | MRTVNSGPLQATRVGAGPAGEPYDRGLPVGKIAVLYHCANQHQTLIPFICTVTP |
Ga0068860_1011856583 | 3300005843 | Switchgrass Rhizosphere | MRISNNGIMQGTRVGAGPAGEPYDRGSTVAKVVVIYHCANKHQTVVPFIWT |
Ga0070717_114226961 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | MRTAKNGTMQGTRVGAGPPGEPYGRGSTVAKVVVLYHCANKHQTVVPFIWT |
Ga0075024_1008175011 | 3300006047 | Watersheds | MRTANNGAMRGTRVGAGPAGEPYVRGFPVGKVVVHYHCANKHQTVVPFI |
Ga0075017_1006330813 | 3300006059 | Watersheds | MRTANNGTMRGTRAGAGPAGELYSRGFAVAKVVVLYHCANKHQTLVPFIWTVT |
Ga0075019_107402582 | 3300006086 | Watersheds | MRTANNGTMRGTRVGAGPAGEPYGRGFAVAKVVVLYHC |
Ga0075015_1006077352 | 3300006102 | Watersheds | MRTANHGTIRGTRVGAGPAGEPHGRGFAVAKVVVLYH |
Ga0075015_1008137471 | 3300006102 | Watersheds | MRTVNNGTMQGTRVGAGPAGEPYGRGFAVAKVVVLYHCA |
Ga0075015_1008820751 | 3300006102 | Watersheds | MRTVNNGTMRGTRVGAGPAGEPYGRGFAVAKVVVLYHC |
Ga0075030_1016359242 | 3300006162 | Watersheds | MRTANNGTMRGTRVGAGPAGEPYGRGFAVAKVVVLYHCA |
Ga0070716_1001390935 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | MRTVNNGIMQGTRVGAGPAGEPIGRGIAVARVVVLYHCANKHQTRVPF |
Ga0070716_1006176751 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | MRTVSSGTMKGTRVGAGPAGEPIGRGIAVARVVVLYHCANKHQTRVPFIWT |
Ga0070765_1000072611 | 3300006176 | Soil | MRTVSNGPIQGTRVGAGPAGEPYGRGFAVAKIVVLYHCANKHQTLVPFIWTVTPP |
Ga0070765_1004098813 | 3300006176 | Soil | MRTVSSGAIQGTRVGAGPAGEPYDRGLAVAKIVVLYHCANK |
Ga0066659_118056281 | 3300006797 | Soil | MRTVNSGTMRGTRVGAGPAGEPHGRGFTVAKVVVLYHC |
Ga0079221_104894681 | 3300006804 | Agricultural Soil | MRTVSSGTMKGTRAGAGPAGEPLGRGIAVARVVVLY |
Ga0075425_1027088593 | 3300006854 | Populus Rhizosphere | MRTVNNGIMQGTRVGAGPAGEPYGRGTAVAKVVVLYHCANKHQTLVP |
Ga0075426_109124331 | 3300006903 | Populus Rhizosphere | MRTVSSGTMKGTRVGAGPAREPYGRGIAVAKVVVLY |
Ga0099827_106381023 | 3300009090 | Vadose Zone Soil | MQGTSVGAGPAGEPYGRGFTVAKVVVPYHCANKHQTLVPF |
Ga0099792_104284481 | 3300009143 | Vadose Zone Soil | MRGTRVGAGPAGEPYGRGFAVAKIVVLYHCANKHQTVVPFIWT |
Ga0075423_130960351 | 3300009162 | Populus Rhizosphere | MRTVSSGTMRGTRVGAGPAAEPHGRGFTVAKVVVLYHCAKK |
Ga0116225_13083522 | 3300009524 | Peatlands Soil | MRTVSNGAMRATRVGAGPAGEPYGRGFAVAKIVVLYHCANKHQTLVPF |
Ga0116220_1000062017 | 3300009525 | Peatlands Soil | MRTVSNGAMRATRVGAGPAGEPYGRGFAVAKVVVLYHCANKHQT |
Ga0116220_103250912 | 3300009525 | Peatlands Soil | MRTAHNGAMKGTRVGAGPAGEPYGRGFAVAKVVVLYHCANKHQT |
Ga0116224_106358321 | 3300009683 | Peatlands Soil | MRGTRAGAGPAGELYGRGLAVGKVVVLYHCANKHQTLVPFIWTV |
Ga0116217_105002971 | 3300009700 | Peatlands Soil | MRTVNYGAVQGTRVGAGPSGDPHGRGLTVAKVVVIYHCANGHGTTVPFIWTAT |
Ga0074044_105327551 | 3300010343 | Bog Forest Soil | MRVNGGIMRTVNNGIMQGTRVGAGPAGEPYGRGNTVAKVI |
Ga0074044_107219881 | 3300010343 | Bog Forest Soil | VGAGPAGEPYGRGFAVAKAVVLYHCANKHQTLVPFIWTATP |
Ga0136449_1038519312 | 3300010379 | Peatlands Soil | MRGTRVGAGPAGELYGRGFAVAKVVVLYHCANKHQTLVPFIWT |
Ga0137391_111237091 | 3300011270 | Vadose Zone Soil | MQGTSVGAGPAGEPYGRGFTVAKVVVLYHCANKHQTLVP |
Ga0137382_107722631 | 3300012200 | Vadose Zone Soil | MRRGNSGTVEGRRVGAGPAGEPHGRGFPVARVVVIYHCANKHQTVVPFIWTASP |
Ga0137365_101451483 | 3300012201 | Vadose Zone Soil | MRTAKNGTMQGTRVGAGPAGEPYGRGFTVAKVVVLYHCANKHQTLVPFIWT |
Ga0137381_111851311 | 3300012207 | Vadose Zone Soil | MRGTRVGAGPAGEPYGRGFTVAKVVVLYHCANKHQTLVPFIWTVT |
Ga0137384_100883335 | 3300012357 | Vadose Zone Soil | MRTVNSGTMRGTRVGAGPAGEPYGRGFTVAKVVVLYHCANKHQTLVPFIW |
Ga0137361_114435803 | 3300012362 | Vadose Zone Soil | MRTVNSGTMRGTRVGAGPAGEPYGRGFTVAKVVVLYHCA |
Ga0164307_114411723 | 3300012987 | Soil | MRTVSSGTMKGIRAGAGPAGEPLGRGITVARVVVLYHCAN |
Ga0157376_119486103 | 3300014969 | Miscanthus Rhizosphere | MRISNNGIMQGTRVGAGPAGEPYDRGSTVAKVVVIYH |
Ga0132255_1017265642 | 3300015374 | Arabidopsis Rhizosphere | MRTVNSGTMRGTRVGAGPAGEPYGRGVTVAKVVVLYH |
Ga0187818_100801561 | 3300017823 | Freshwater Sediment | MRTVNYGAVQGTRVGAGPAGDPHGRGLAVAKVVVIYHCANGHRTTVP |
Ga0187807_11577562 | 3300017926 | Freshwater Sediment | MRTVNNGAMRATRVGAGPAGEPYGRGFAVAKIAVLYHCANKHQTLVPFIWTVTPPA |
Ga0187806_13906912 | 3300017928 | Freshwater Sediment | MRTVNSGTMRGTRVGAGPASEPYGRGFTVAKVVVLYHC |
Ga0187822_100876333 | 3300017994 | Freshwater Sediment | MRTVNNGAMRATRVGAGPAGEPYGRGFAVAKIAVLYHCSNKHQTL |
Ga0187883_103912762 | 3300018037 | Peatland | MRTMNTGAMRATRVGAGPAGEPYDGGFTVAKVVVLYHCANGHRTAVPFI |
Ga0187855_106691561 | 3300018038 | Peatland | MRTVNSGPLQATRVGAGPAGEPYDRGLPVGKISVLYHCANKHQTLIPFICTVTPPLQWEC |
Ga0210395_107612082 | 3300020582 | Soil | MRTVTSGTMKGTRIGAGPAGDPYGRGFTVARVVVLYHCANKHQTLVP |
Ga0210405_107381281 | 3300021171 | Soil | MRTVNSGTMRGTRVGAGPAGEPYGRGFAVAKVVVFYHCANKHQTRVPFIWTATPPP |
Ga0210396_111632111 | 3300021180 | Soil | MRTGNNGPMQGTRVGAGPAGEPYGRGFAVAKIVVLYHCA |
Ga0210388_112940782 | 3300021181 | Soil | MRTANHGAMRGTRVGAGPVGEPDGRGLAVAKVVVLYH |
Ga0210385_106545331 | 3300021402 | Soil | MRTVNTGIMRATRVGAGPAGEPYGRGSTVAKVVVLYH |
Ga0210397_107990912 | 3300021403 | Soil | MRTANNGTMKGTRVGAGPAGEPYGRGFAVAKVVVLYHCANKHQTLVPFIWTVTPP |
Ga0210383_111691271 | 3300021407 | Soil | MRTVNSSAIQGTRAGAGPASEPYGRGFAVAKIVVVYHCANKHQTSVPFIWTVTPPR |
Ga0210391_108143391 | 3300021433 | Soil | MRTGNNGPMQGTRVGAGPAGEPYGRGFAVAKIVVLYHCANKHQTLVPFIWTVTRPTQWE |
Ga0210390_105886251 | 3300021474 | Soil | MRTANNGPMQGTRVGAGPAGEPYGRGFAVAKIVVLYHCANKHQTIVPFIWTVT |
Ga0210410_116820141 | 3300021479 | Soil | MRTANHGAMRGTRVGAGPVGEPYGRGLAVDKVVVLYHCANG |
Ga0210409_112946311 | 3300021559 | Soil | MRTVNSSAIQGTRAGAGPASEPYGRGFAVAKIVVVYHCANKH |
Ga0208589_10641551 | 3300025634 | Arctic Peat Soil | MRTVNNGTMQGTRVGAGPASDPYGRGFTVAKVVVLYHCANGHRTT |
Ga0207692_110840431 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | MRTVNSGTMRGTRVGAGPAGEPYGRGFAVAKVVVF |
Ga0207699_103900341 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | MRTVNSGTMRGTRVGAGPAGEPYGRGFAVAKVVVFYHCANKHQ |
Ga0207699_113467102 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | MRTVNNGIMQGTRVGAGPAGEPYGRGFAVAKVVVLYHCANKHQTRVPFIGTVTPPPQWE |
Ga0207663_106748551 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | MRAAKNGTMRGTRAGAGPAGEPDGHGFTVAKVVVLYHCANKHQTLVP |
Ga0207700_112069441 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | MRTAKNGTMQGTRVGAGPAGEPYGRGFTVAKVVVLYHCANKHQTLVPFIWTATPP |
Ga0207700_113669291 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | MRTVNSGTMRGTRVGAGPAGEPHGRGFTVAKVVVLYHCANKHQTPVPFIWTATPP |
Ga0207669_110360721 | 3300025937 | Miscanthus Rhizosphere | MRTVNNGIMQGTRVGAGPAGEPYGRGTAVAKVVVLYHCANKHQTLVPFIWT |
Ga0207665_104769143 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | MRTVNNGIMQGTRVGAGPAGEPIGRGIAVARVVVLYHCANKHQTPVPFIWTVTPPPQWE |
Ga0208603_10705411 | 3300027109 | Forest Soil | MRTVNSSAIQGTRAGAGPASEPYGRGFAVAKIVVVYHCANKHQTSVPFIWTV |
Ga0209530_12247292 | 3300027692 | Forest Soil | MRTANHGTVRGTRVGAGPAREPNGRGSAVAKAVVLYYCASRHR |
Ga0209178_11920582 | 3300027725 | Agricultural Soil | MRTANNGIMQGTRVGAGPAGEPYGRGSTVAKVVVIYHCANKHQTLVP |
Ga0209328_101411631 | 3300027727 | Forest Soil | MRTANSGTMRGTRVGAGPAGEPYGRGFAVAKVVVLYHCANKHQTLVP |
Ga0209580_102303282 | 3300027842 | Surface Soil | MRNVNHGAVQGTRVGAGPASDPHGRGLTVAKVVVIYHCANGHRTTVPLIWTAIPPP |
Ga0209274_104262782 | 3300027853 | Soil | MRTVNSGPLQATRVGAGPAGEPYDRGLPVGKIAVLYHCA |
Ga0209590_104680981 | 3300027882 | Vadose Zone Soil | MRTVNNGTMQGTSVGAGPAGEPYGRGFTVAKVVVPYHCANKHQTLVPFI |
Ga0209488_101844006 | 3300027903 | Vadose Zone Soil | MRTVNNGTMQGTSVGAGPAGEPYGRGFTVAKVVVPYHCANKHQTLVPFIWTATPP |
Ga0209415_106596291 | 3300027905 | Peatlands Soil | MRTVNYGAVQGTRVGAGPSGDPHGRGLTVAKVVVIYHCANGHGTTVPFIWTA |
Ga0209069_108765451 | 3300027915 | Watersheds | MRTANNGIMQGTRVGAGPAGEPYGRGSTVAKVSVIYH |
Ga0302220_103371422 | 3300028742 | Palsa | MRTVNTGIMRATRVGAGPAGEPYGRGSAVAKVVVLYHCANGHTTT |
Ga0307282_104400122 | 3300028784 | Soil | MRTANNGIMQGTRVGAGPAGEPYDRGSTVAKVVVIYHCANKHQTLVPFIWTATPP |
Ga0302228_103673891 | 3300028808 | Palsa | MRTVNHGTMRGTRVGSGPAGEPNGRGATVTKVVVPY |
Ga0311340_104535441 | 3300029943 | Palsa | MRTVNHGTVRGTRVGAGPARERNGREAAVAKVVVLYYCASRHRTRVPFLWTATPP |
Ga0302182_104685631 | 3300030054 | Palsa | MRTVNSGPLQATRVGAGPAGEPYDRGLPVGKISVLYHCANQH |
Ga0302179_103072881 | 3300030058 | Palsa | MRTVTTGIMRATRVGAGPAGEPYGRGATVAKAVVPYYCANGH |
Ga0310037_104325751 | 3300030494 | Peatlands Soil | MRTVNNGTMRGTRVGAGPAGEPYGRGFAVAKVVVLYHCANKHQTLV |
Ga0311357_106215153 | 3300030524 | Palsa | MRIVNHGTLRGTRVGAGPGGEPLGRGTAVVKVVVPYYCASGHR |
Ga0302325_110137491 | 3300031234 | Palsa | MRTVKHGSVRGTRVGAGPAREPNGRGLTVAKVVVLYYCASGHRTTVPFIWTATP |
Ga0302325_127226802 | 3300031234 | Palsa | MRTVNNGIMQGTRVGAGPAREPYDRGYTVAKVVVHYRCAN |
Ga0302324_1021391421 | 3300031236 | Palsa | MRTASHSSVRGTRVGAGPAREPNGRGANVAKIVVPYYCA |
Ga0302326_118684673 | 3300031525 | Palsa | MRTVSSGPIQGTRVGAGPAGEPYDRGLAVAKIVVLY |
Ga0310686_1000206171 | 3300031708 | Soil | MRTANRGALRGTRAGSGPAGEPYGRGLAVAKVVVLY |
Ga0310686_1052698551 | 3300031708 | Soil | MRTSNNGAMRGTRVGAGPAGEPYGRGFAVAKVVVLYHCANKHQTLVP |
Ga0307476_105943021 | 3300031715 | Hardwood Forest Soil | MRTVNSSAIQGTRAGAGPAGEPYGRGFAVAKVVVVYHCANKHQTSVPFIWTVTPPRQ |
Ga0307470_105645951 | 3300032174 | Hardwood Forest Soil | MRISNNGIMQGTRVGAGPAGEPYDRGSTVAKVVVIYHCANKHQTLVPFIWTASPP |
Ga0307471_1026376121 | 3300032180 | Hardwood Forest Soil | MRTANNGTMQGTRVGAGPAGEPHGRGFPVARVVVIYHCANEHQTVVPF |
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