Metagenome / Metatranscriptome Family F092623

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092623
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	43 residues
Representative Sequence	PETAALGHALVRKARHVPGVVAVRDRLTYPDTYPIVAGPVF
Number of Associated Samples	93
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.94 %
% of genes near scaffold ends (potentially truncated)	98.13 %
% of genes from short scaffolds (< 2000 bps)	87.85 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.654 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.430 % of family members)
Environment Ontology (ENVO)	Unclassified (22.430 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (33.645 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.84% β-sheet: 11.59% Coil/Unstructured: 69.57%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00583	Acetyltransf_1	24.30
PF13607	Succ_CoA_lig	19.63
PF13380	CoA_binding_2	14.95
PF13302	Acetyltransf_3	12.15
PF13420	Acetyltransf_4	4.67
PF00144	Beta-lactamase	1.87
PF09364	XFP_N	0.93
PF14691	Fer4_20	0.93
PF00990	GGDEF	0.93
PF00571	CBS	0.93
PF13185	GAF_2	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	1.87
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.87
COG2367	Beta-lactamase class A	Defense mechanisms [V]	1.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.65 %
Unclassified	root	N/A	9.35 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.65 %
Unclassified	root	N/A	9.35 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.65 %
Unclassified	root	N/A	9.35 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	85.98 %
Unclassified	root	N/A	9.35 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.93 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	83.18 %
Unclassified	root	N/A	9.35 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	73.83 %
Unclassified	root	N/A	9.35 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.35 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.80 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.93 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.35 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.80 %
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	0.93 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.35 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.80 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.93 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004977\|Ga0072329_1029984	Not Available	514	Open in IMG/M
3300005175\|Ga0066673_10717588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	575	Open in IMG/M
3300005345\|Ga0070692_11227929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	535	Open in IMG/M
3300005353\|Ga0070669_101568990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	573	Open in IMG/M
3300005436\|Ga0070713_100045630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3592	Open in IMG/M
3300005436\|Ga0070713_100047863	All Organisms → cellular organisms → Bacteria	3517	Open in IMG/M
3300005436\|Ga0070713_100060661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3162	Open in IMG/M
3300005436\|Ga0070713_102044995	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300005437\|Ga0070710_10712029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	709	Open in IMG/M
3300005439\|Ga0070711_100642844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	889	Open in IMG/M
3300005445\|Ga0070708_100682065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	967	Open in IMG/M
3300005471\|Ga0070698_100801871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	886	Open in IMG/M
3300005566\|Ga0066693_10224877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	738	Open in IMG/M
3300005618\|Ga0068864_101195722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	759	Open in IMG/M
3300006028\|Ga0070717_10320711	All Organisms → cellular organisms → Bacteria	1380	Open in IMG/M
3300006173\|Ga0070716_100178083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1393	Open in IMG/M
3300006173\|Ga0070716_101484628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	554	Open in IMG/M
3300006603\|Ga0074064_11763728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	664	Open in IMG/M
3300006954\|Ga0079219_10700744	All Organisms → cellular organisms → Bacteria → Terrabacteria group	770	Open in IMG/M
3300009176\|Ga0105242_12957763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	526	Open in IMG/M
3300009700\|Ga0116217_10867490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	554	Open in IMG/M
3300010159\|Ga0099796_10322948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	659	Open in IMG/M
3300010343\|Ga0074044_10091216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2053	Open in IMG/M
3300010371\|Ga0134125_10268612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1895	Open in IMG/M
3300010373\|Ga0134128_10920102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	968	Open in IMG/M
3300010379\|Ga0136449_100951140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1391	Open in IMG/M
3300010379\|Ga0136449_102162878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	813	Open in IMG/M
3300010379\|Ga0136449_102739459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	698	Open in IMG/M
3300010400\|Ga0134122_12992137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	527	Open in IMG/M
3300010858\|Ga0126345_1060146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1283	Open in IMG/M
3300010876\|Ga0126361_10618416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1080	Open in IMG/M
3300011068\|Ga0138599_1030136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	819	Open in IMG/M
3300011083\|Ga0138560_1179503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	614	Open in IMG/M
3300012360\|Ga0137375_11276377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	556	Open in IMG/M
3300012960\|Ga0164301_10250134	Not Available	1163	Open in IMG/M
3300013296\|Ga0157374_12276714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	569	Open in IMG/M
3300014162\|Ga0181538_10202768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1112	Open in IMG/M
3300014968\|Ga0157379_10537581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1086	Open in IMG/M
3300015373\|Ga0132257_102262416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	704	Open in IMG/M
3300017946\|Ga0187879_10744966	Not Available	546	Open in IMG/M
3300017974\|Ga0187777_10274885	Not Available	1147	Open in IMG/M
3300018001\|Ga0187815_10095828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1250	Open in IMG/M
3300018007\|Ga0187805_10591869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	524	Open in IMG/M
3300018034\|Ga0187863_10249629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	986	Open in IMG/M
3300018038\|Ga0187855_10656984	All Organisms → cellular organisms → Bacteria → Terrabacteria group	611	Open in IMG/M
3300018086\|Ga0187769_10309718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1181	Open in IMG/M
3300021374\|Ga0213881_10150802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1018	Open in IMG/M
3300021388\|Ga0213875_10667289	Not Available	504	Open in IMG/M
3300021403\|Ga0210397_10246321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1295	Open in IMG/M
3300021404\|Ga0210389_10757335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	759	Open in IMG/M
3300021475\|Ga0210392_10582798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	829	Open in IMG/M
3300022708\|Ga0242670_1038920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	642	Open in IMG/M
3300022720\|Ga0242672_1036000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	774	Open in IMG/M
3300024279\|Ga0247692_1081462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	510	Open in IMG/M
3300025905\|Ga0207685_10820979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	513	Open in IMG/M
3300025911\|Ga0207654_10401890	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	953	Open in IMG/M
3300025916\|Ga0207663_10018078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3941	Open in IMG/M
3300025916\|Ga0207663_10866624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	721	Open in IMG/M
3300025924\|Ga0207694_10139237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1951	Open in IMG/M
3300025928\|Ga0207700_10033255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3688	Open in IMG/M
3300025928\|Ga0207700_10421112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1173	Open in IMG/M
3300025928\|Ga0207700_11292852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	650	Open in IMG/M
3300025929\|Ga0207664_10358723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1291	Open in IMG/M
3300025937\|Ga0207669_10893120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	742	Open in IMG/M
3300025939\|Ga0207665_10202832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1446	Open in IMG/M
3300025939\|Ga0207665_11282566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	584	Open in IMG/M
3300025942\|Ga0207689_11121743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	663	Open in IMG/M
3300026067\|Ga0207678_11702451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	554	Open in IMG/M
3300026142\|Ga0207698_12158050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	570	Open in IMG/M
3300026552\|Ga0209577_10443247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	909	Open in IMG/M
3300027915\|Ga0209069_10910313	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	533	Open in IMG/M
3300028714\|Ga0307309_10146165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	595	Open in IMG/M
3300028828\|Ga0307312_10069380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2137	Open in IMG/M
3300031035\|Ga0074026_11066345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	726	Open in IMG/M
3300031543\|Ga0318516_10032389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2767	Open in IMG/M
3300031549\|Ga0318571_10376402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	550	Open in IMG/M
3300031668\|Ga0318542_10077081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1572	Open in IMG/M
3300031719\|Ga0306917_10404567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1066	Open in IMG/M
3300031744\|Ga0306918_10740138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	769	Open in IMG/M
3300031768\|Ga0318509_10571900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	630	Open in IMG/M
3300031771\|Ga0318546_10785096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	670	Open in IMG/M
3300031771\|Ga0318546_11002798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	587	Open in IMG/M
3300031832\|Ga0318499_10010258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3020	Open in IMG/M
3300031833\|Ga0310917_10739229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	666	Open in IMG/M
3300031890\|Ga0306925_10828892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	957	Open in IMG/M
3300031890\|Ga0306925_11755370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	596	Open in IMG/M
3300031912\|Ga0306921_10662493	Not Available	1202	Open in IMG/M
3300031941\|Ga0310912_10996482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	643	Open in IMG/M
3300031942\|Ga0310916_10186532	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1730	Open in IMG/M
3300031946\|Ga0310910_11092650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	621	Open in IMG/M
3300032041\|Ga0318549_10307358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	715	Open in IMG/M
3300032055\|Ga0318575_10019284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2829	Open in IMG/M
3300032055\|Ga0318575_10059611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1772	Open in IMG/M
3300032063\|Ga0318504_10073862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1486	Open in IMG/M
3300032066\|Ga0318514_10129115	Not Available	1300	Open in IMG/M
3300032090\|Ga0318518_10163570	Not Available	1133	Open in IMG/M
3300032160\|Ga0311301_11377754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	882	Open in IMG/M
3300032261\|Ga0306920_104099522	Not Available	527	Open in IMG/M
3300032770\|Ga0335085_10986723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	911	Open in IMG/M
3300032782\|Ga0335082_10083020	All Organisms → cellular organisms → Bacteria	3215	Open in IMG/M
3300032783\|Ga0335079_10037829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5541	Open in IMG/M
3300032805\|Ga0335078_11169772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	892	Open in IMG/M
3300032805\|Ga0335078_12047714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	610	Open in IMG/M
3300032829\|Ga0335070_11314597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	661	Open in IMG/M
3300032898\|Ga0335072_10580500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1134	Open in IMG/M
3300033134\|Ga0335073_10780678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1029	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.92%
Host-Associated	Host-Associated	13.08%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.37%
Plants	Host-Associated → Plants	13.08%
Aquatic	Environmental → Aquatic	6.54%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.44%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.41%
Freshwater	Environmental → Aquatic → Freshwater	5.61%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.74%
Sediment	Environmental → Aquatic → Sediment	0.93%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.93%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.60%
Loam	Environmental → Terrestrial → Soil → Loam	20.56%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.28%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.04%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	19.63%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.76%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.80%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.43%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	18.69%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.48%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	7.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.61%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.80%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.87%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.87%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.87%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.87%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004977	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 67 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010858	Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011068	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 67 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011083	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 45 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300022708	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022720	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024279	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK33	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031035	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Humus N1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0072329_10299841	3300004977	Peatlands Soil	VTVAGSPETAALGHHIVHKVQHVQGVVAVRDHLSYPDVYPIVAGPVL*
Ga0066673_107175882	3300005175	Soil	APETASFGRALIRKARHVPGVVAVRDRLSYPDVYPVAAGPVF*
Ga0070692_112279291	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	GSPETAALGHDIVRKIRHVPGVVAVHDQLGYPDIYPIVAGPVF*
Ga0070669_1015689901	3300005353	Switchgrass Rhizosphere	TMEGTPETAALGHALIRKARHVPGVVAVRDRLSYPDTYPVVAGPVF*
Ga0070674_1009225481	3300005356	Miscanthus Rhizosphere	VTVQTGVVTAQGSPETAALGRDIVRKIRHVPGVVAVHQLSYPDTYPIVAGPVF*
Ga0070713_1000456301	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	TPETAALGHALIRKARHVPGVVAVRDRLSYPDAYPVVAEPVF*
Ga0070713_1000478633	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	ESGVVTMEGTPETAALGHALIRKARHVPGVVAVRDRLSYPDTHPVVAGPVF*
Ga0070713_1000606611	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	PETAAFGRALIRKVRHVPGVVAVRDRLSYSDVYPVVAGPVF*
Ga0070713_1020449951	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	ESGVVTMEGTPETAALGHALIRKARHVPGVVAVRDRLSYPDTYPVVAGPVF*
Ga0070710_107120291	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	AGVVTVQGSPETAALGHDIVRKIRHVPGVVAVHDQLGYPDIYPIVAGPVF*
Ga0070711_1006428441	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	GVVTLEGTPETAALGRSLVRKARHVRGVVAVRDRLSYPDVYPVIAGPVC*
Ga0070708_1006820651	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VTVQGSPETAALGHDIVRKIRHVPGVVAVHDELSYPDTYPIVAGPVF*
Ga0070698_1008018712	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	GSPETAALGHDIVRKIRHVPGVVAVHDELSYPDTYPIVAGPVF*
Ga0066693_102248771	3300005566	Soil	EGTPETAALGRALIRKARHVPGVVAVRDRLSYPDVYPVVAGPVF*
Ga0068864_1011957222	3300005618	Switchgrass Rhizosphere	LGHALIRKARHVPGVVAVRDRLSYPDTHPVVAGPVF*
Ga0070717_103207113	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	ESGVVTMEGTPETAALGHALIRKARHVPGVVAVRDRLSYPDAYPVVAEPVF*
Ga0070716_1001780831	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	AALGHALIRKARHVPGVVAVRDRLSYPDTYPVVAGPVF*
Ga0070716_1014846281	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	GVVTLEGTPETAALGRALVRKARHVRGVVAVRDLLSYPDVYPVIAGPVC*
Ga0074064_117637282	3300006603	Soil	GHALIRKARHVPGVVAVRDRLSYPDTYPVVAGPVF*
Ga0079219_107007441	3300006954	Agricultural Soil	TAALGRTLIRKARHVSGVVAVRDRLSYPDTYPVVAGPVF*
Ga0105242_129577631	3300009176	Miscanthus Rhizosphere	AALGHALIRKARHVPGVVAVRDRLSYPDVYPVVAGPVF*
Ga0116217_108674901	3300009700	Peatlands Soil	TAALGHHIVGKVRHVQGVVAVRDQLSYPDVYPIVAGPVL*
Ga0099796_103229482	3300010159	Vadose Zone Soil	MEGIPETAALGHALIRKARHVPGVVAVRDRLSYPDIYPVVASPVF*
Ga0074044_100912161	3300010343	Bog Forest Soil	AALGHHIVDKVRDIQGVVAVRDQLSYPDVYPIVAGPVL*
Ga0134125_102686121	3300010371	Terrestrial Soil	GTPETAALGQALIRKARHVPGVVAVRDRLSYPDTYPVVAGPVF*
Ga0134128_109201022	3300010373	Terrestrial Soil	GSPETAALGHDIVRKIRHVPGVVAVHDQLSYPDTYPIVAGPVF*
Ga0136449_1009511402	3300010379	Peatlands Soil	VTVAGSPETAALGHHIVGKVRHVQGVVAVRDQLSYPDVYPIVAGPVL*
Ga0136449_1021628781	3300010379	Peatlands Soil	LQGSPETAALGHHIVRKIRHVQGVVAVRDSLSYPEVYPIVAGPVL*
Ga0136449_1027394592	3300010379	Peatlands Soil	ETAALGHHIVHKVQHVQGVVAVRDHLSYPDVYPIVAGPVL*
Ga0134122_129921371	3300010400	Terrestrial Soil	ETAALGHDIVRKIRHVPGVVAVHDQLSYPDTYPIVAGPVF*
Ga0126345_10601461	3300010858	Boreal Forest Soil	TMEGTPETAALGHALIRKARHVPGVVAVRDRLSYPDIYPVVAGPVF*
Ga0126361_106184161	3300010876	Boreal Forest Soil	ALGHDIVRKIRHVQGVVAVRDRLSYPDAYPIVAGPLC*
Ga0138599_10301361	3300011068	Peatlands Soil	HHIVHKVQHVQGVVAVRDHLSYPDVYPIVAGPVL*
Ga0138560_11795031	3300011083	Peatlands Soil	PETAALGHHIVHKVQHVQGVVAVRDHLSYPDVYPIVAGPVL*
Ga0137375_112763771	3300012360	Vadose Zone Soil	LGRALIRKARHVPGVVAVRDRLSYPDIYPVVAGPVF*
Ga0164301_102501342	3300012960	Soil	HDIVRKIRHVPGLVAVHDQLGYPDTYPIVAGPVF*
Ga0157374_122767141	3300013296	Miscanthus Rhizosphere	GVVTVQGSPETAALGHDIVRKIRHVPGLVAVHDQLGYPDTYPIVAGPVF*
Ga0181538_102027682	3300014162	Bog	PETAALGHHIVHKVQHVEGVVAVRDHLSYPDVYPIVAGPVL*
Ga0157379_105375812	3300014968	Switchgrass Rhizosphere	AALGHDIVRKIRHVPGVVAVHQLSYPDTYPIVAGPVF*
Ga0132257_1022624161	3300015373	Arabidopsis Rhizosphere	TPETAAFGRSLVRKARHVPGVVAVRDRLAYSDDYPVVAGPVL*
Ga0187879_107449661	3300017946	Peatland	SLGQDLVRKIRHVQGVVAVRDRLSYPEAFPIVAGPLF
Ga0187777_102748851	3300017974	Tropical Peatland	AAALGHALVRKARHVPGVVAVRDRLTYPDTTPVVAGPVS
Ga0187815_100958281	3300018001	Freshwater Sediment	LGHHIVGKVRHVQGVVAVRDQLSYPDVYPIVAGPVL
Ga0187805_105918692	3300018007	Freshwater Sediment	VEDGVVTLAGSPETAALGHHIVGKVRHVQGVVAVRDQLSYPDVYPIVAGPVL
Ga0187863_102496292	3300018034	Peatland	SLGQDLVRKIRHVQGVVAVRDRLSYPEVFPIVAGPIF
Ga0187855_106569842	3300018038	Peatland	GHDLVEKVRHVQGVVAVRDRLSYPDAFPVVVGPVF
Ga0187769_103097182	3300018086	Tropical Peatland	GRDLVRKARHVPGVVAVRDRLTYPDTYPVASGPLS
Ga0213881_101508022	3300021374	Exposed Rock	GRALVRKARHVPGVVAVRDRLSYSDDYPIAAGPVF
Ga0213875_106672891	3300021388	Plant Roots	EGTPETAALGHHLMHRARHVAGVVAVRDRLSYPDTYPIVAGPQF
Ga0210397_102463211	3300021403	Soil	GVVTVQGSPETAALGHDIVRKIRHVPGVVAVHDQLSYPDTYPIVAGRVF
Ga0210389_107573352	3300021404	Soil	QGSPETAALGHDIARKIRHVPGVVAVHDQLSYPDTYPIVAGPVF
Ga0210392_105827982	3300021475	Soil	VVTLEGNAETAALGHVIVRKVRHVQGVVAVRDRLTYPDVYASIAGPDSDPAIGRPR
Ga0242670_10389201	3300022708	Soil	ALGHALVRKARHVPGVVAVRDRLTYPDNYPVVAGPVF
Ga0242672_10360001	3300022720	Soil	ATAALGHDMVRRIRHVQGVVAVRDRLSYPDGYPIVAGPVF
Ga0247692_10814622	3300024279	Soil	AALGHALIRKARHVPGVVAVRDRLSYPDTYPVVAGPVF
Ga0207685_108209793	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	TMEGTPETAALGHALIRKARHVPGVVAVRDRLSYPDIYPVVAGPVF
Ga0207654_104018902	3300025911	Corn Rhizosphere	TVESGVVTMEGTPETAALGHALIRKARHVPGVVAVRDRLSYPDTYPVVAGPVF
Ga0207663_100180783	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	EGTPETAAFGRALIRKVRHVPGVVAVRDRLSYSDVYPVVAGPVF
Ga0207663_108666241	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	EGIPETAALGRALVRKARHIRGVVAVRDRLSHPVVAGPVF
Ga0207694_101392371	3300025924	Corn Rhizosphere	ESGVVTMEGTPETAALGHALIRKARHVPGVVAVRDRLSYPDTHPVVAGPVF
Ga0207700_100332551	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	TMEGTPETAALGHALIRKARHVPGVVAVRDRLSYPDTHPVVAGPVF
Ga0207700_104211121	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	EGTPETAALGHALIRKARHVPGVVAVRDRLSYPDAYPVVAEPVF
Ga0207700_112928522	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	GVVTLEGTPETAALGRSLVRKARHVPGVVAVRDRLSYSDDYPIVAGPVF
Ga0207664_103587231	3300025929	Agricultural Soil	PETAAFGRALIRKVRHVPGVVAVRDRLSYQDVYPVVAGPVF
Ga0207669_108931202	3300025937	Miscanthus Rhizosphere	TVESGVVTMEGTPETAALGHALIRKARHVPGVVAVRDRLSYPDTHPVVAGPVF
Ga0207665_102028322	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	ALGHALIRKARHVPGVVAVRDRLSYPDTYPVVAGPVF
Ga0207665_112825662	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	SGVVTMEGTPETAALGHALIRKARHVPGVVAVRDRLSYPDTYPVVAGPVF
Ga0207689_111217432	3300025942	Miscanthus Rhizosphere	TMEGTPETAALGHALIRKARHVPGVVAVRDRLSYPDTYPVVAGPVF
Ga0207678_117024512	3300026067	Corn Rhizosphere	TVIVEDGVVTLEGIPETVALGRALVRKARHIRGVVAVRDRLSHPVVAGPVF
Ga0207698_121580501	3300026142	Corn Rhizosphere	GSPETAALGHDIVRKIRHVPGVVAVHDQLGYPDIYPIVAGPVF
Ga0209577_104432471	3300026552	Soil	PETAAFGRALIRKARHVPGVVAVRDRLSYPDVYPVVAGPVF
Ga0209069_109103132	3300027915	Watersheds	MEGCPETAALGRDLVRKARHVPGVVAVLDRLSYPDSYPVVGAPLS
Ga0307309_101461651	3300028714	Soil	EGTPETAALGHTLIRKARHVPGVVAVRDRLSYPDVYPVVAGPVFGAGFS
Ga0307312_100693803	3300028828	Soil	GRTLIRKARHVPGVVAVRDRLSYPDIYPVVAGPVL
Ga0074026_110663451	3300031035	Soil	FQAGVVTLEGRPETAALGHDMVRRVRRVQGVVAVRDRLSYPDAYPVVAGPVSLTR
Ga0318516_100323891	3300031543	Soil	SGVVTMEGCPETAALGRALVRKARHVRGVVAVRDRFTYPDTYPVVAGPVF
Ga0318571_103764021	3300031549	Soil	GHALVRKARHVPGVVAVRDRLTYPDTSPVVAGPVF
Ga0318542_100770811	3300031668	Soil	SGVVTMEGCPETAALGHALVRKARHVPGVVAVRDRLTYPDNYSIVSGPVF
Ga0306917_104045672	3300031719	Soil	TMEGTPETAALGHALVRKARHVPGVVAVRDRLTYPDTYPVVAGPVL
Ga0306918_107401382	3300031744	Soil	LGRALVRKARHVPGVVAVRDRLTYPDTYPVVAGPVV
Ga0318509_105719002	3300031768	Soil	AALGRALVRKARHVPGVVAVRDRLTYPDTSPVVAGPVF
Ga0318546_107850961	3300031771	Soil	SGVVTMEGCPETAALGRALVRKARHVPGVVAVRDRLTYPDTSPVVAGPVF
Ga0318546_110027981	3300031771	Soil	PETAALGHALVRKARHVPGVVAVRDRLTYPDTYPIVAGPVF
Ga0318499_100102583	3300031832	Soil	VVTMEGCPETAALGHALVRKARHVPGVVAVRDRLTYPDNYSIVSGPVF
Ga0310917_107392291	3300031833	Soil	PETAALGHALVRKARHVPGVVAVRDRLTYPDNYSIVSGPVF
Ga0306925_108288922	3300031890	Soil	VTMEGCPETAALGHALVRKARHVPGVVAVRDRLTYPDNYSIVSGPVF
Ga0306925_117553702	3300031890	Soil	GHALVRKARHVPGVVAVRDRLTYPDTYPVVAGPVL
Ga0306921_106624932	3300031912	Soil	GTPETAALGHALVRKARHVPGVVAVRDRLTYPDTYPVVAGPVL
Ga0310912_109964822	3300031941	Soil	MEGTPETAALGHALVRKARHVPGVVAVRDRLTYPDTYPVVAGPVL
Ga0310916_101865322	3300031942	Soil	GCPETAALGHALVRKARHVPGVVAVRDRLTYPDNYSIVSGPVF
Ga0310910_110926501	3300031946	Soil	AALGHALVRKARHVPGVVAVRDRLTYPDTYPIVAGPVF
Ga0318549_103073581	3300032041	Soil	TMEGTPETAALGRALVRKARHVPGVVAVRDRLTYPDTYPVVAGPVF
Ga0318575_100192841	3300032055	Soil	CPETAALGHALVRKARHVPGVVAVRDRLTYPDNYSIVSGPVF
Ga0318575_100596111	3300032055	Soil	RGNPETTELGHEIVRKVRHVPGVVAVRDRLSYPDDAPVAAAPLF
Ga0318504_100738622	3300032063	Soil	VVTMEGCPETAALGHALVRKARHVPGVVAVRDRLTYPDTYPIVAGPVF
Ga0318514_101291151	3300032066	Soil	EGTPETAALGHALVRKARHVPGVVAVRDRLTYPDTYPVVAGPVL
Ga0318518_101635701	3300032090	Soil	GHALVRKARHVPGVVAVRDRLTYPDNYSIVSGPVF
Ga0311301_113777541	3300032160	Peatlands Soil	LGHHIVHKVQHVQGVVAVRDHLSYPDVYPIVAGPVL
Ga0306920_1040995222	3300032261	Soil	VTMEGCPETAALGRALVRKARHVPGVVAVRDRLTYPDTYPVVAGPVV
Ga0335085_109867231	3300032770	Soil	VVTLQGKPETAALGHEIVRKVRHVPGVVAVRDRLSYPDESPVVAAPLF
Ga0335082_100830203	3300032782	Soil	EAGVVTLEGSPETTALGREIVRRVRHVPGVVAVRDRLSYPDDSPVVAAPLF
Ga0335079_100378295	3300032783	Soil	VVTMEGTPETAALGRALVRKARHVPGVVAVRDRLTYPDTYPVVAGPVF
Ga0335078_111697722	3300032805	Soil	PETAAFGRALIRKVRHVPGVVAVRDRLSYSDVYPVVAGPVF
Ga0335078_120477141	3300032805	Soil	SGVVTMEGCPETTALGRALVRKARHVPGVVAVRDRLTYPDTYPVVAGPVF
Ga0335070_113145971	3300032829	Soil	ESGVVTMEGCPETAALGHALVRKARHVPGVVAVRDRFTYPDTYPVVAGPVL
Ga0335072_105805001	3300032898	Soil	ESGVVTMEGTPETAALGRALVRKARHVPGVVAVRDRLTYPDTYPVVAGPVL
Ga0335073_107806783	3300033134	Soil	TVESGVVTLEGTPETAAFGHALIRKVRHVPGVVAVRDRLSYPDVYPVVAGPVF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092623

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences