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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F092597 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 107 |
| Average Sequence Length | 47 residues |
| Representative Sequence | IDATGTRGSAVFTTNVYVADPLVQVVQTTSIRVTVLVQKAGSASTH |
| Number of Associated Samples | 96 |
| Number of Associated Scaffolds | 107 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 0.93 % |
| % of genes from short scaffolds (< 2000 bps) | 0.00 % |
| Associated GOLD sequencing projects | 89 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.31 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (99.065 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (11.215 % of family members) |
| Environment Ontology (ENVO) | Unclassified (19.626 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (49.533 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 36.49% Coil/Unstructured: 63.51% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.31 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 107 Family Scaffolds |
|---|---|---|
| PF02878 | PGM_PMM_I | 53.27 |
| PF02880 | PGM_PMM_III | 22.43 |
| PF02879 | PGM_PMM_II | 12.15 |
| PF13483 | Lactamase_B_3 | 3.74 |
| PF13305 | TetR_C_33 | 0.93 |
| PF00575 | S1 | 0.93 |
| PF08206 | OB_RNB | 0.93 |
| COG ID | Name | Functional Category | % Frequency in 107 Family Scaffolds |
|---|---|---|---|
| COG0033 | Phosphoglucomutase/phosphomannomutase | Carbohydrate transport and metabolism [G] | 87.85 |
| COG1109 | Phosphomannomutase | Carbohydrate transport and metabolism [G] | 87.85 |
| COG0557 | Exoribonuclease R | Transcription [K] | 0.93 |
| COG1158 | Transcription termination factor Rho | Transcription [K] | 0.93 |
| COG1278 | Cold shock protein, CspA family | Transcription [K] | 0.93 |
| COG4776 | Exoribonuclease II | Transcription [K] | 0.93 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 99.07 % |
| All Organisms | root | All Organisms | 0.93 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300009792|Ga0126374_10038575 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 2318 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 11.21% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 7.48% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 6.54% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 6.54% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 5.61% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 4.67% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 4.67% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 4.67% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 4.67% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 4.67% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 3.74% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 3.74% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 2.80% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 2.80% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 2.80% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 2.80% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 2.80% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 1.87% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere | 1.87% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.93% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.93% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 0.93% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 0.93% |
| Permafrost Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil | 0.93% |
| Prmafrost Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil | 0.93% |
| Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost | 0.93% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.93% |
| Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil | 0.93% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 0.93% |
| Plant Litter | Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter | 0.93% |
| Termite Gut | Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut | 0.93% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere | 0.93% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere | 0.93% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2040502001 | Soil microbial communities from sample at FACE Site 2 North Carolina CO2+ | Environmental | Open in IMG/M |
| 3300001356 | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 | Environmental | Open in IMG/M |
| 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Environmental | Open in IMG/M |
| 3300005454 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 | Environmental | Open in IMG/M |
| 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Environmental | Open in IMG/M |
| 3300005526 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 | Environmental | Open in IMG/M |
| 3300005533 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 | Environmental | Open in IMG/M |
| 3300005545 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG | Environmental | Open in IMG/M |
| 3300005587 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 | Environmental | Open in IMG/M |
| 3300005602 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 | Environmental | Open in IMG/M |
| 3300005712 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 | Environmental | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300005952 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045 | Environmental | Open in IMG/M |
| 3300005994 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 | Environmental | Open in IMG/M |
| 3300006046 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101 | Environmental | Open in IMG/M |
| 3300006052 | Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013 | Environmental | Open in IMG/M |
| 3300006059 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012 | Environmental | Open in IMG/M |
| 3300006162 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 | Environmental | Open in IMG/M |
| 3300006173 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG | Environmental | Open in IMG/M |
| 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Environmental | Open in IMG/M |
| 3300006176 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 | Environmental | Open in IMG/M |
| 3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Host-Associated | Open in IMG/M |
| 3300006954 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control | Environmental | Open in IMG/M |
| 3300009029 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189 | Environmental | Open in IMG/M |
| 3300009088 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG | Environmental | Open in IMG/M |
| 3300009792 | Tropical forest soil microbial communities from Panama - MetaG Plot_12 | Environmental | Open in IMG/M |
| 3300009839 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG | Environmental | Open in IMG/M |
| 3300010049 | Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3 | Host-Associated | Open in IMG/M |
| 3300010358 | Tropical forest soil microbial communities from Panama - MetaG Plot_3 | Environmental | Open in IMG/M |
| 3300010373 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4 | Environmental | Open in IMG/M |
| 3300010379 | Sb_50d combined assembly | Environmental | Open in IMG/M |
| 3300010398 | Tropical forest soil microbial communities from Panama - MetaG Plot_35 | Environmental | Open in IMG/M |
| 3300011269 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG | Environmental | Open in IMG/M |
| 3300012349 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG | Environmental | Open in IMG/M |
| 3300012357 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG | Environmental | Open in IMG/M |
| 3300014165 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG | Environmental | Open in IMG/M |
| 3300014168 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG | Environmental | Open in IMG/M |
| 3300014199 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG | Environmental | Open in IMG/M |
| 3300014200 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG | Environmental | Open in IMG/M |
| 3300014501 | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300014654 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG | Environmental | Open in IMG/M |
| 3300015372 | Soil combined assembly | Host-Associated | Open in IMG/M |
| 3300016294 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 | Environmental | Open in IMG/M |
| 3300016371 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 | Environmental | Open in IMG/M |
| 3300017933 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1 | Environmental | Open in IMG/M |
| 3300017936 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1 | Environmental | Open in IMG/M |
| 3300017943 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4 | Environmental | Open in IMG/M |
| 3300017946 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10 | Environmental | Open in IMG/M |
| 3300017955 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2 | Environmental | Open in IMG/M |
| 3300017995 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1 | Environmental | Open in IMG/M |
| 3300018037 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10 | Environmental | Open in IMG/M |
| 3300018044 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10 | Environmental | Open in IMG/M |
| 3300018058 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG | Environmental | Open in IMG/M |
| 3300018085 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300018086 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG | Environmental | Open in IMG/M |
| 3300020580 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M | Environmental | Open in IMG/M |
| 3300020581 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M | Environmental | Open in IMG/M |
| 3300020582 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O | Environmental | Open in IMG/M |
| 3300021180 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O | Environmental | Open in IMG/M |
| 3300021403 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O | Environmental | Open in IMG/M |
| 3300021407 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O | Environmental | Open in IMG/M |
| 3300021420 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M | Environmental | Open in IMG/M |
| 3300021433 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O | Environmental | Open in IMG/M |
| 3300021559 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M | Environmental | Open in IMG/M |
| 3300022881 | Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24 | Environmental | Open in IMG/M |
| 3300023012 | Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU4 | Environmental | Open in IMG/M |
| 3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025939 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027521 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027625 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027821 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027879 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes) | Environmental | Open in IMG/M |
| 3300027898 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes) | Environmental | Open in IMG/M |
| 3300027908 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes) | Environmental | Open in IMG/M |
| 3300029951 | III_Palsa_N1 coassembly | Environmental | Open in IMG/M |
| 3300030494 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2) | Environmental | Open in IMG/M |
| 3300030760 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030813 | Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031241 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG | Host-Associated | Open in IMG/M |
| 3300031344 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG | Host-Associated | Open in IMG/M |
| 3300031446 | Fir Summer Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
| 3300031715 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05 | Environmental | Open in IMG/M |
| 3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
| 3300031890 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2) | Environmental | Open in IMG/M |
| 3300031897 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16 | Environmental | Open in IMG/M |
| 3300031942 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176 | Environmental | Open in IMG/M |
| 3300031954 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2) | Environmental | Open in IMG/M |
| 3300031962 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515 | Environmental | Open in IMG/M |
| 3300032001 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2) | Environmental | Open in IMG/M |
| 3300032160 | Sb_50d combined assembly (MetaSPAdes) | Environmental | Open in IMG/M |
| 3300032174 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05 | Environmental | Open in IMG/M |
| 3300032805 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 | Environmental | Open in IMG/M |
| 3300032829 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3 | Environmental | Open in IMG/M |
| 3300033158 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| FACENCE_935030 | 2040502001 | Soil | EKIDNATTDPIDATGVKGSSAFTTNVYVSDPLVQVVQVTSIRVTVTVQKTGTEKDTSH |
| JGI12269J14319_100439753 | 3300001356 | Peatlands Soil | PIPGPRHHVERIDAATTDPIDATGTRGSAVFTTNVYVADPLVQVVQTTSIRVTVLVQKVGSSTPH* |
| Ga0070713_1006684172 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | DPIDATGTLGSAVFTTNVYVPDPLVQVEQATSVRVTVVVQKVGSATTH* |
| Ga0066687_102128151 | 3300005454 | Soil | TGTLGRAVFTTNAYVADPLVQVSQGTSVRVTVVVEKVGTPTSH* |
| Ga0070707_1010755841 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | ATGTRGSAIFNTNVYVPDPLVQVVQTTSIRVTVLVQRVGSVSAH* |
| Ga0073909_100476842 | 3300005526 | Surface Soil | EKIDAATTDPIDATGTLGSAVFTTNVYVSDPLVQVEQATSIRVTVVVQKTGTATTH* |
| Ga0070734_106852541 | 3300005533 | Surface Soil | DPINASGLRGSAVFTTTVYVPDPLVQVEQTTTVRVTVVVEKPGAAASH* |
| Ga0070695_1015109702 | 3300005545 | Corn, Switchgrass And Miscanthus Rhizosphere | GTRGSAVFSTNVYVPDPLVQVDQATSIRVTVVVQRVGGATSH* |
| Ga0066654_101869861 | 3300005587 | Soil | PIDASGTLGSAVFTTNAYVADPLVQVTQGTSIRVTVKVEKLGTPTTH* |
| Ga0070762_112549531 | 3300005602 | Soil | VFTTNAYIADPLVQVVQATSIRVTVIVQKAAVALPH* |
| Ga0070764_106194201 | 3300005712 | Soil | ATTDPIDATGTRGTAVFTTNVYVPDPLVQVVQTTSIRVTVIVQKTANAAAH* |
| Ga0066903_1000708616 | 3300005764 | Tropical Forest Soil | TDPIDASGTLGRGVFTTNVYVSDPMVQVEQAGSIRVTVMVEKPGGSTTH* |
| Ga0080026_100212334 | 3300005952 | Permafrost Soil | VEKIGEATTDPIDASGVRSSGVFTTNVYIGDPLVQVQTQTASIRVTIHVQKASPPPQ* |
| Ga0066789_100655262 | 3300005994 | Soil | ATGTRGGAVFTTNVYVADPLVQVLQTTSIRVTVLVQKPGSATTH* |
| Ga0066652_1019138952 | 3300006046 | Soil | TITGPRQHVEKIDAATTDPIDATGTLGRAVFTSNAFVADPLVQVAQNTSMIRVTVVVEKLGSSTTH* |
| Ga0075029_1011677472 | 3300006052 | Watersheds | GTRGSAVFTTNVYVADPLVQVLQATSIRVTVLVQKPGTASPH* |
| Ga0075017_1010253391 | 3300006059 | Watersheds | PIDATGTRGSAVFITTVYVSDPLVQVDQATSIRVTVVVQKIGSATTH* |
| Ga0075017_1014448112 | 3300006059 | Watersheds | TGPRHHVEQIDAATTDPIDATGTRGAAVFTTNVYVSDPLVQVVQATSIRVTVLVQKVGSATTH* |
| Ga0075030_1003413921 | 3300006162 | Watersheds | VDATGTRGSAVFTTNVYVPDPLVQVVQPTSIRVTVVVQKVGTATTH* |
| Ga0075030_1010268582 | 3300006162 | Watersheds | ATTDPIDATGTRGSAVFSTNVYVADPLVQVVQTTSIRVTVLVQKAGSSTTH* |
| Ga0070716_1006017522 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | GSAVFTTNVYVPDPLVQVEQDTSIRVTVIVQKVGTATTH* |
| Ga0070712_1015729752 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | VFTTNVYVSDPLVQVEQATSIRVTVLVQKVGAATTH* |
| Ga0070765_1003560061 | 3300006176 | Soil | PIDATGTFGSAVFTTNVYVPDPLVQVEQATSIRVTVVVQKIGTATSH* |
| Ga0070765_1009695692 | 3300006176 | Soil | GSAVFTTNVYVPDPLIQVEQATSIRVTVIVQKVGTATSH* |
| Ga0068871_1012287881 | 3300006358 | Miscanthus Rhizosphere | GVFTTNVYVSDPMVQVEQGGSIRVTVIVEKAGGPSLH* |
| Ga0079219_114424661 | 3300006954 | Agricultural Soil | VFSSNAFVADPLVQVAQNTSMIRVTVVVEKLGSSTTH* |
| Ga0066793_103964831 | 3300009029 | Prmafrost Soil | VEKIDAATTDPIDATGTRGSALFNTNVYVPDPLVQVVQTTSIRVTVLVQRVGSASAH* |
| Ga0099830_114857471 | 3300009088 | Vadose Zone Soil | PRITITGPRHHVEKIDAATTDPIAATGTRGSGVFTTNVYVTDPLVQVVQTTSIRVTVLVQKVGSVSEH* |
| Ga0126374_100385751 | 3300009792 | Tropical Forest Soil | GSAVFTTNVYVPDPLVQIEPAGLIRVTVTVQKIGTPTTH* |
| Ga0116223_101034852 | 3300009839 | Peatlands Soil | VFTTNVYVADPLVQVIRATSIRVTVLVQKAGTVSPH* |
| Ga0123356_100137787 | 3300010049 | Termite Gut | VFITNVYVSDPVVQVEQTTVRVTVVVEKAGGATSP* |
| Ga0126370_115554191 | 3300010358 | Tropical Forest Soil | GPRQHVERIDAATTDPIDATGTLGSAVFTTNVYVPDALVQVEQAGVIRVTVVVQKVGAPTAH* |
| Ga0134128_132319071 | 3300010373 | Terrestrial Soil | TTNAYVADPLVQVAQGTSIRVTVVVEKLGAPTTH* |
| Ga0136449_1012621572 | 3300010379 | Peatlands Soil | ATTDPIDATGTRGSGVFTTNVYVPDPMVQVTPAASIRVTVVVQKIGSSPAH* |
| Ga0126383_130401461 | 3300010398 | Tropical Forest Soil | DPIDASGTLGRGVFTTNVYVSDPMVQVEQAGSIRVTVMVEKPGGSTTH* |
| Ga0137392_110042852 | 3300011269 | Vadose Zone Soil | HVEKIDAATTDPIDASGTRGSGVFTTNVYVADPLVQVVQTTSIRVTVLVQKVGSAPAH* |
| Ga0137387_107871361 | 3300012349 | Vadose Zone Soil | FTTNVYVADPLVQVVQTTSIRVTVLVQKVGSVSEH* |
| Ga0137384_104331772 | 3300012357 | Vadose Zone Soil | TTDPIDATGTRGSGVFTTNVYVADPLVQVVQTTSIRVTVLVQKVGSVSEH* |
| Ga0181523_107176431 | 3300014165 | Bog | TVFTTNAYVSDPLVQVVEAASIRVTVTVQKLGSGTAH* |
| Ga0181534_107214091 | 3300014168 | Bog | NTSVYVSDPLIQVDQVNSIRVTVIVQKVGSATAH* |
| Ga0181535_106762812 | 3300014199 | Bog | EKIDAATTDPIDATGTLGSAVFNTSVYVSDPLIQIDQVNSIRVTVIVQKVGSATAH* |
| Ga0181526_102487201 | 3300014200 | Bog | RAVFTTNVYVADPLVQVVQTTSIRVTVVVQKAGTASAH* |
| Ga0182024_118671062 | 3300014501 | Permafrost | VERIDAATTDPIDATGTRGGAVFNTNVYVPDPLVQVVQSASIRVTVLVQKVGSAPPH* |
| Ga0181525_101129541 | 3300014654 | Bog | AMTDLIDATGTRGRAVFTTNVYVADPLVQVVQTTSIRVTVTVQRTGNSTTH* |
| Ga0132256_1013655781 | 3300015372 | Arabidopsis Rhizosphere | GTRGSAVFTTNVYVPDPLVQVEQDTSIRVTVIVQKVGTATTH* |
| Ga0182041_120103621 | 3300016294 | Soil | TDPIDATGTLGSAVFTSNVYVPDPLVQVEQDTSIRVTVIVQKVGTATSH |
| Ga0182034_117886112 | 3300016371 | Soil | TTDPIDATGTLGSAVFTTDVYVPDPLVQVEQTGSIRVTVVVQKAGSPTPN |
| Ga0187801_101956981 | 3300017933 | Freshwater Sediment | VDEAKTDLIDATGILGTSVFTTNVYVSDPLVQVVQPTSVRVTVTVQKIGAPTSH |
| Ga0187821_104870061 | 3300017936 | Freshwater Sediment | TTDPIDATGTRGSAVFTTNVYVADPLVQVVQPTSIRVTVLVEKVGTPSAH |
| Ga0187819_100574093 | 3300017943 | Freshwater Sediment | AVFTTNVYVSDPLVQVAQATSIRVTVQVQKVGTATAH |
| Ga0187819_100856811 | 3300017943 | Freshwater Sediment | DATGTRGSAVFTTNVYVPDPLVQVVKPISIRVTVVVQKVGSSTAH |
| Ga0187819_107924872 | 3300017943 | Freshwater Sediment | IDAATTDPIDATGTLGTAVFTTNVYVSDPLVQVEEPTSVRVTVIVQKIGTATSH |
| Ga0187879_105382392 | 3300017946 | Peatland | SRQTFTTNVYVADPLVQVVQPTSIHVTVVMETAGSPAH |
| Ga0187817_102261011 | 3300017955 | Freshwater Sediment | HHVEKIDAATTDPIDASGTRGSAVFTTNVYVSDPLVQVAQASSIRVTVQVQKVGTATAH |
| Ga0187816_104011422 | 3300017995 | Freshwater Sediment | TDPIDASGTRGSAVFTTNVYVSDPLVQVAQATSIRVTVQVQKVGTATAH |
| Ga0187883_107488991 | 3300018037 | Peatland | AATTDLIDAKGTRGRAVFTTNVYVADPLVQVVQTTSIRVTVVVQKAGTASAH |
| Ga0187890_102544652 | 3300018044 | Peatland | VFTTNVYVADPLVQVVQTTSIRVTVTVQRAGTASPH |
| Ga0187766_113303461 | 3300018058 | Tropical Peatland | IDAATTDPIDATGTLGTAVFTTNVYVSDPLVQVEEPTAVRVRVMVEKIGSATLH |
| Ga0187772_102346041 | 3300018085 | Tropical Peatland | PRHHVERIDAATTDPIDASGTLGSAIFTTNVYVTDPLVQVQQATSIRVTVVVQKVGTATT |
| Ga0187769_109258401 | 3300018086 | Tropical Peatland | TLGRAVFTTNVYVADPLVQVVQPTSVRVTVTVQKLGSGTAH |
| Ga0210403_102621992 | 3300020580 | Soil | IDATGTRGSAVFTTNVYVADPLVQVVQTTSIRVTVLVQKAGSASTH |
| Ga0210399_102353831 | 3300020581 | Soil | TTDPIDATGTRGSAIFTTNVYVADPLVQVVQTTSIRVTVFVQKAGSATAH |
| Ga0210395_101814462 | 3300020582 | Soil | DPIDATGTFGSAVFTTNVYVPDPLVQVEQATSIRVTVVVQKIGTATSH |
| Ga0210396_100260795 | 3300021180 | Soil | AFTSNVYIADPLVQVVQATSIRVTVTVQKAGTASSH |
| Ga0210397_103644642 | 3300021403 | Soil | YATTDPIDATGTRGTAVFTTNVYVADPLVQVVQTTSIRVTVIVQKAGSTAAH |
| Ga0210397_115866912 | 3300021403 | Soil | DPIDATGTRGSAVFTTNVYVADPLVQVVQTTSIRVTVLVQKAGSASTH |
| Ga0210383_111873951 | 3300021407 | Soil | RDSAVFNTNVYVPDPLVQVVQSASIRVTVLVQKVGGAPPH |
| Ga0210394_104117881 | 3300021420 | Soil | GSAVFTTNVYVPDPLVQVEQATSIRVTVVVQKIGTATSH |
| Ga0210391_113694061 | 3300021433 | Soil | RSRQTFTTNVYVADPLVQVVQPTSIHVTVVMEAASSPAH |
| Ga0210409_107077351 | 3300021559 | Soil | FTTNVYVADPLVQVVQTTSIRVTVLVQKAGSASTH |
| Ga0224545_10155932 | 3300022881 | Soil | GPRGHVEKVEAATTDPIDATGTRGSAVFTINVYVADPLVQVVQSSSIRVRVLVQKVGSTAAH |
| Ga0228597_1118361 | 3300023012 | Plant Litter | TDPIDASGTRGTAVFTTNVYVPDPLIQVVGTTSIRVTVQVQKAGTTAAH |
| Ga0207693_111055092 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | VFTTNVYVSDPLVQVEQATSIRVTVLVQKVGAATTH |
| Ga0207646_108619711 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | TDPVDATGTRGSAIFNTNVYVPDPLVQVVQTTSIRVTVLVQRVGSVSAH |
| Ga0207665_105627141 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | GSAVFTTNVYVPDPLVQVEQDTSIRVTVIVQKVGTATTH |
| Ga0209524_10600652 | 3300027521 | Forest Soil | DATGTRGSALFNTNVYVSDPLVQVVQATSIRVTVVVQKVGSASTH |
| Ga0208044_11186011 | 3300027625 | Peatlands Soil | IDAKGIRGRAVFTTNVYVADPLVQVIRATSIRVTVLVQKAGTVSPH |
| Ga0208044_11352201 | 3300027625 | Peatlands Soil | SAVYTTNVYVADPLVQVVQTTSIRVTVLVQKVGSSTPH |
| Ga0209811_102105861 | 3300027821 | Surface Soil | HVEKIDAATTDPIDATGTLGSAVFTTNVYVSDPLVQVEQATSIRVTVVVQKTGTATTH |
| Ga0209169_101280442 | 3300027879 | Soil | ATTDPIDATGTRGTAVFTTNVYVPDPLVQVVQTTSIRVTVIVQKTANAAAH |
| Ga0209067_103700221 | 3300027898 | Watersheds | TGTLGSAVFTTNVYVSDPLVQVEQATSIRVTVVVQKVGTATTH |
| Ga0209006_103897022 | 3300027908 | Forest Soil | VFTTNVYVSDPLVQVVQTTSIRVTVLVQKVGTPSVP |
| Ga0311371_107362632 | 3300029951 | Palsa | RGSAVFTTNAYVSDPLVQVEHPVSIRVTVVVQKPGIPK |
| Ga0310037_100123821 | 3300030494 | Peatlands Soil | KIDAATTDPIDATGTMGSKVFSTNVYVSDSLVQVVQPTPVRVTVTVQKVGSASAH |
| Ga0265762_10187962 | 3300030760 | Soil | SGTINRATFVTNVYVADPLVQVVQPTSIHVAVVMEAVGSSAH |
| Ga0265750_11014312 | 3300030813 | Soil | DASGTRSRQTFTTNVYVADPLVQVVQPTSIHVTVVMEAASSPAH |
| Ga0265325_100416193 | 3300031241 | Rhizosphere | VEKIDAATTDPIDATGTRGRAVFSTNVYVSDPLVQVVQTTSIRVTVQVQKVGTAPAH |
| Ga0265316_110358931 | 3300031344 | Rhizosphere | IDATGTRGSGVFTTNVYVSDPLVQVVQTTSIRVSVLVQKVGTPSSH |
| Ga0170820_167583891 | 3300031446 | Forest Soil | GPRQHVERLDAATTDPIDATGTRGSAVFTTNVYVSDPLVQVVNTTSIRVTVQVQKPGNSPAH |
| Ga0310686_1041464262 | 3300031708 | Soil | TTDPIDATGTRGSGVFTTNVYVADPLVQVLQTTSIRVTVLVQKVGSSSAH |
| Ga0310686_1146846072 | 3300031708 | Soil | RGRAVFTTNVYVADPLVQVMQTTSIRVTVVVQKTSVASPH |
| Ga0307476_108864582 | 3300031715 | Hardwood Forest Soil | HHVEVVDAATTDPIDASETTTQATFVTNVYVPDALVQVVQPTPVRVTVIVEKKAPTQ |
| Ga0307469_107287762 | 3300031720 | Hardwood Forest Soil | TGTLGSAVFTTNVYVSDPLVQVEQATSIRVTVVVQKTGTATTH |
| Ga0306925_111683981 | 3300031890 | Soil | AVFTTNVYVPDPLVQIAQTGLIRVTVIVQKTGTPTTH |
| Ga0318520_107592102 | 3300031897 | Soil | FTTNVYVPDPLVQIAQTGLIRVTVIVQKTGTPTTH |
| Ga0310916_110301712 | 3300031942 | Soil | RHHVEKIDAATTDPIDATGTLGTGVFTTNVYVADPLVQVEQGSVRVTVVVQKIGAPTIH |
| Ga0306926_109768032 | 3300031954 | Soil | DATGALGSAVFTTNVYVPDPLVQIAQTGLIRVTVIVQKTGTPTTH |
| Ga0307479_103990551 | 3300031962 | Hardwood Forest Soil | AATTDPLDATGTRGAGVFSTNVYVSDPMVQVVQPSSTRVTVIVQKVGAGTTH |
| Ga0307479_112256081 | 3300031962 | Hardwood Forest Soil | TFGSAVFTTNVYVSDPLVQVEHATTIRVTVVVQKIGTATSH |
| Ga0306922_106599011 | 3300032001 | Soil | ATTDPIDATGALGSAVFTTNVYVPDPLVQIAQTGLIRVTVIVQKTGTPTTH |
| Ga0311301_108529591 | 3300032160 | Peatlands Soil | PRRHVDRVDAATTDPIDATGTRGSGVFTTNVYVPDPMVQVTPAASIRVTVVVQKIGSSPA |
| Ga0307470_100815132 | 3300032174 | Hardwood Forest Soil | DATGTLGSAVFITNVYVPDPLVQVEQAASIRVTVVVEKVGTATTH |
| Ga0335078_101382995 | 3300032805 | Soil | PIDATGTRGSAVFATNVYVADPLVQIEQVSSIRVTVIVQKVGTAPAH |
| Ga0335078_124105702 | 3300032805 | Soil | HVEKIQVATTDPIDATGTTSTGVFTTNVFVPDPLVQVTQVTPIRVTVIVQKVGAPTTH |
| Ga0335078_125342382 | 3300032805 | Soil | IDSATTDLIDATGVFGTAVFTTDVYVADPLVQVEPASSVRVTVTVQKIGAPTSH |
| Ga0335070_104766631 | 3300032829 | Soil | ATGTLGNAVFTTNVYVPDPLVQVDQDTSIRVTVVVQKVGVATTH |
| Ga0335077_100356417 | 3300033158 | Soil | VGTQGTGFFNVNVYVSDPLVQVVDPTNVRVTVVVQKVGTATSH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |