Metagenome / Metatranscriptome Family F092580

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092580
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	62 residues
Representative Sequence	MKRRELIRAGFLAGAAAALRPSVGKAQSAAQSSELTPAQSGVDASKDLAAPGWKPLFL
Number of Associated Samples	92
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	95.33 %
% of genes from short scaffolds (< 2000 bps)	90.65 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.243 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.495 % of family members)
Environment Ontology (ENVO)	Unclassified (34.579 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.355 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 18.60% β-sheet: 0.00% Coil/Unstructured: 81.40%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.23
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.23
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF07969	Amidohydro_3	10.28
PF01261	AP_endonuc_2	7.48
PF01022	HTH_5	3.74
PF00106	adh_short	2.80
PF00069	Pkinase	2.80
PF12704	MacB_PCD	2.80
PF13360	PQQ_2	1.87
PF00990	GGDEF	1.87
PF14378	PAP2_3	0.93
PF13407	Peripla_BP_4	0.93
PF10518	TAT_signal	0.93
PF01527	HTH_Tnp_1	0.93
PF02353	CMAS	0.93
PF07883	Cupin_2	0.93
PF02518	HATPase_c	0.93
PF00484	Pro_CA	0.93
PF09286	Pro-kuma_activ	0.93
PF13384	HTH_23	0.93
PF04238	DUF420	0.93
PF13460	NAD_binding_10	0.93
PF11453	DUF2950	0.93
PF11737	DUF3300	0.93
PF12796	Ank_2	0.93
PF03576	Peptidase_S58	0.93
PF07452	CHRD	0.93
PF04255	DUF433	0.93
PF00989	PAS	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	11.21
COG3191	L-aminopeptidase/D-esterase	Amino acid transport and metabolism [E]	1.87
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.93
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.93
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	0.93
COG2230	Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases	Lipid transport and metabolism [I]	0.93
COG2322	Cytochrome oxidase assembly protein CtaM/YozB, DUF420 family	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	0.93
COG4934	Serine protease, subtilase family	Posttranslational modification, protein turnover, chaperones [O]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.24 %
Unclassified	root	N/A	17.76 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.24 %
Unclassified	root	N/A	17.76 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.24 %
Unclassified	root	N/A	17.76 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	57.94 %
Unclassified	root	N/A	17.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.80 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.76 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	15.89 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	8.41 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.80 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.93 %
Deinococcus-Thermus	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.89 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	8.41 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	1.87 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	0.93 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.89 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8.41 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	1.87 %
Thermales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales	0.93 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.93 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.89 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8.41 %
Nevskia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia	1.87 %
Thermaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae	0.93 %
Pseudoxanthomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas	0.93 %
Actinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.89 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8.41 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	1.87 %
unclassified Pseudoxanthomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → unclassified Pseudoxanthomonas	0.93 %
Meiothermus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Meiothermus	0.93 %
Actinomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.89 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8.41 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	1.87 %
Pseudoxanthomonas sp. CF125	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → unclassified Pseudoxanthomonas → Pseudoxanthomonas sp. CF125	0.93 %
unclassified Actinomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → unclassified Actinomyces	0.93 %
Meiothermus taiwanensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Meiothermus → Meiothermus taiwanensis	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.89 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8.41 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	1.87 %
Actinomyces sp. ICM47	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → unclassified Actinomyces → Actinomyces sp. ICM47	0.93 %
Pseudoxanthomonas sp. CF125	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → unclassified Pseudoxanthomonas → Pseudoxanthomonas sp. CF125	0.93 %
Meiothermus taiwanensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Meiothermus → Meiothermus taiwanensis	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_11504791	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300000789\|JGI1027J11758_11997605	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	768	Open in IMG/M
3300003505\|JGIcombinedJ51221_10350631	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300004082\|Ga0062384_100711296	Not Available	693	Open in IMG/M
3300004082\|Ga0062384_100952387	Not Available	611	Open in IMG/M
3300004091\|Ga0062387_101076816	All Organisms → cellular organisms → Bacteria → Acidobacteria	621	Open in IMG/M
3300004152\|Ga0062386_100324522	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1230	Open in IMG/M
3300004157\|Ga0062590_100642237	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300004479\|Ga0062595_101369207	Not Available	642	Open in IMG/M
3300005174\|Ga0066680_10951091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Meiothermus → Meiothermus taiwanensis	506	Open in IMG/M
3300005179\|Ga0066684_10486822	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300005180\|Ga0066685_10290614	All Organisms → cellular organisms → Bacteria → Acidobacteria	1131	Open in IMG/M
3300005180\|Ga0066685_11095278	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300005184\|Ga0066671_10531115	All Organisms → cellular organisms → Bacteria → Acidobacteria	757	Open in IMG/M
3300005332\|Ga0066388_101327270	All Organisms → cellular organisms → Bacteria	1243	Open in IMG/M
3300005332\|Ga0066388_104966376	All Organisms → cellular organisms → Bacteria → Acidobacteria	676	Open in IMG/M
3300005434\|Ga0070709_11310164	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
3300005435\|Ga0070714_100839394	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	891	Open in IMG/M
3300005438\|Ga0070701_11086170	Not Available	562	Open in IMG/M
3300005467\|Ga0070706_101475535	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	622	Open in IMG/M
3300005561\|Ga0066699_10895030	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300005598\|Ga0066706_10205705	All Organisms → cellular organisms → Bacteria	1514	Open in IMG/M
3300005602\|Ga0070762_11251052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → unclassified Actinomyces → Actinomyces sp. ICM47	514	Open in IMG/M
3300005843\|Ga0068860_102741016	Not Available	511	Open in IMG/M
3300005994\|Ga0066789_10014696	All Organisms → cellular organisms → Bacteria	3468	Open in IMG/M
3300006052\|Ga0075029_101307221	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300006086\|Ga0075019_11090988	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300006173\|Ga0070716_100939526	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300006175\|Ga0070712_100408148	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300006176\|Ga0070765_101014114	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	785	Open in IMG/M
3300006176\|Ga0070765_101780538	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300006354\|Ga0075021_10775875	All Organisms → cellular organisms → Bacteria → Acidobacteria	618	Open in IMG/M
3300006806\|Ga0079220_10762714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → unclassified Pseudoxanthomonas → Pseudoxanthomonas sp. CF125	724	Open in IMG/M
3300006852\|Ga0075433_11857898	All Organisms → cellular organisms → Bacteria → Acidobacteria	517	Open in IMG/M
3300006854\|Ga0075425_101142291	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300006871\|Ga0075434_102163809	Not Available	560	Open in IMG/M
3300006893\|Ga0073928_11234026	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300006903\|Ga0075426_10332165	All Organisms → cellular organisms → Bacteria	1115	Open in IMG/M
3300006903\|Ga0075426_10465731	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300006914\|Ga0075436_100450950	Not Available	937	Open in IMG/M
3300009137\|Ga0066709_104296634	All Organisms → cellular organisms → Bacteria → Acidobacteria	519	Open in IMG/M
3300009520\|Ga0116214_1418970	Not Available	524	Open in IMG/M
3300010043\|Ga0126380_10101937	All Organisms → cellular organisms → Bacteria	1725	Open in IMG/M
3300010339\|Ga0074046_10523565	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	706	Open in IMG/M
3300010358\|Ga0126370_10441961	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1082	Open in IMG/M
3300010358\|Ga0126370_10666650	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300010359\|Ga0126376_13121210	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300010360\|Ga0126372_12079626	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300010362\|Ga0126377_12217708	All Organisms → cellular organisms → Bacteria → Acidobacteria	625	Open in IMG/M
3300010396\|Ga0134126_10392181	All Organisms → cellular organisms → Bacteria	1614	Open in IMG/M
3300011120\|Ga0150983_13364283	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1330	Open in IMG/M
3300012198\|Ga0137364_10810064	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	708	Open in IMG/M
3300012199\|Ga0137383_10136020	All Organisms → cellular organisms → Bacteria → Acidobacteria	1796	Open in IMG/M
3300012202\|Ga0137363_11258374	All Organisms → cellular organisms → Bacteria → Acidobacteria	627	Open in IMG/M
3300012361\|Ga0137360_10350723	All Organisms → cellular organisms → Bacteria → Acidobacteria	1235	Open in IMG/M
3300012923\|Ga0137359_10121309	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2319	Open in IMG/M
3300012929\|Ga0137404_10553982	All Organisms → cellular organisms → Bacteria → Acidobacteria	1030	Open in IMG/M
3300012971\|Ga0126369_10126177	All Organisms → cellular organisms → Bacteria → Acidobacteria	2367	Open in IMG/M
3300012971\|Ga0126369_11065959	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300012971\|Ga0126369_13643731	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300012975\|Ga0134110_10085671	All Organisms → cellular organisms → Bacteria → Acidobacteria	1264	Open in IMG/M
3300014157\|Ga0134078_10247273	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	747	Open in IMG/M
3300015200\|Ga0173480_11181341	Not Available	515	Open in IMG/M
3300020579\|Ga0210407_10146055	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1821	Open in IMG/M
3300020579\|Ga0210407_10627119	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	837	Open in IMG/M
3300020581\|Ga0210399_10000426	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	33779	Open in IMG/M
3300020581\|Ga0210399_10589769	All Organisms → cellular organisms → Bacteria → Acidobacteria	920	Open in IMG/M
3300020581\|Ga0210399_10940003	All Organisms → cellular organisms → Bacteria → Acidobacteria	699	Open in IMG/M
3300020582\|Ga0210395_10381799	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1060	Open in IMG/M
3300020582\|Ga0210395_11278134	Not Available	538	Open in IMG/M
3300020583\|Ga0210401_10968329	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	710	Open in IMG/M
3300021046\|Ga0215015_10775276	All Organisms → cellular organisms → Bacteria → Acidobacteria	778	Open in IMG/M
3300021168\|Ga0210406_10523152	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	935	Open in IMG/M
3300021180\|Ga0210396_10234175	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1635	Open in IMG/M
3300021406\|Ga0210386_10125047	All Organisms → cellular organisms → Bacteria	2131	Open in IMG/M
3300021420\|Ga0210394_11722151	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300021478\|Ga0210402_10874751	All Organisms → cellular organisms → Bacteria → Acidobacteria	825	Open in IMG/M
3300021478\|Ga0210402_11908348	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300021559\|Ga0210409_10102191	All Organisms → cellular organisms → Bacteria	2643	Open in IMG/M
3300022531\|Ga0242660_1222947	All Organisms → cellular organisms → Bacteria → Acidobacteria	527	Open in IMG/M
3300022557\|Ga0212123_10620890	Not Available	678	Open in IMG/M
3300023259\|Ga0224551_1046247	All Organisms → cellular organisms → Bacteria → Acidobacteria	757	Open in IMG/M
3300024182\|Ga0247669_1050945	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300025917\|Ga0207660_11033992	All Organisms → cellular organisms → Bacteria → Acidobacteria	670	Open in IMG/M
3300026304\|Ga0209240_1222883	All Organisms → cellular organisms → Bacteria → Acidobacteria	572	Open in IMG/M
3300026310\|Ga0209239_1249062	All Organisms → cellular organisms → Bacteria → Acidobacteria	613	Open in IMG/M
3300026317\|Ga0209154_1138249	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1021	Open in IMG/M
3300026330\|Ga0209473_1260121	All Organisms → cellular organisms → Bacteria → Acidobacteria	592	Open in IMG/M
3300026377\|Ga0257171_1083822	All Organisms → cellular organisms → Bacteria → Acidobacteria	562	Open in IMG/M
3300026498\|Ga0257156_1125695	All Organisms → cellular organisms → Bacteria → Acidobacteria	534	Open in IMG/M
3300026532\|Ga0209160_1156989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	1026	Open in IMG/M
3300027061\|Ga0209729_1052574	All Organisms → cellular organisms → Bacteria → Acidobacteria	519	Open in IMG/M
3300027071\|Ga0209214_1009440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	1158	Open in IMG/M
3300027768\|Ga0209772_10163815	All Organisms → cellular organisms → Bacteria → Acidobacteria	699	Open in IMG/M
3300031128\|Ga0170823_12226047	All Organisms → cellular organisms → Bacteria → Acidobacteria	961	Open in IMG/M
3300031718\|Ga0307474_10181699	All Organisms → cellular organisms → Bacteria → Acidobacteria	1596	Open in IMG/M
3300031720\|Ga0307469_10187137	Not Available	1600	Open in IMG/M
3300031720\|Ga0307469_11542425	All Organisms → cellular organisms → Bacteria → Acidobacteria	637	Open in IMG/M
3300031771\|Ga0318546_10246075	Not Available	1230	Open in IMG/M
3300031819\|Ga0318568_10248007	Not Available	1102	Open in IMG/M
3300031945\|Ga0310913_10303039	All Organisms → cellular organisms → Bacteria → Acidobacteria	1127	Open in IMG/M
3300031962\|Ga0307479_10622414	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1061	Open in IMG/M
3300032892\|Ga0335081_11764883	Not Available	671	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.46%
Host-Associated	Host-Associated	6.54%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.11%
Aquatic	Environmental → Aquatic	9.35%
Plants	Host-Associated → Plants	6.54%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.61%
Freshwater	Environmental → Aquatic → Freshwater	4.67%
Sediment	Environmental → Aquatic → Sediment	2.80%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.87%
Peat	Environmental → Terrestrial → Peat	0.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.42%
Loam	Environmental → Terrestrial → Soil → Loam	14.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.61%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.80%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.04%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	14.02%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.80%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.87%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.21%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.41%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.61%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.61%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.61%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.74%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.80%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.87%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.93%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.93%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459023	Grass soil microbial communities from Rothamsted Park, UK - FA3 (control condition)	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300023259	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24	Environmental	Open in IMG/M
3300024182	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300027061	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FA3_03059060	2170459023	Grass Soil	MKRRELLRVGALAGAVTALRPPLATPQTASKSPELTPAQSGIDASQELFAANWKPLFLDDHQNETLII
JGI1027J11758_115047912	3300000789	Soil	MRRRELLKAGAFAGMVAALRPPIAQGQDTKTNAELTPAQSGVDASNDLAAPGWKPKFFDEHQNETLI
JGI1027J11758_119976051	3300000789	Soil	MKRRELLRAGVLTGATAALTSSLSMAQSAAQTTAQSSELTPAQRGVDASNELSAPGWKPLFL
JGIcombinedJ51221_103506312	3300003505	Forest Soil	MKRREMLRASVLAGAAAALRPALSSAQSGAQGTAPLPELTPAQNGVDASKDLAAPGWKPLFLDDHQ
Ga0062384_1007112961	3300004082	Bog Forest Soil	MKRRELIRAGILSGAVAAALHPQLALAQGASPSSELTPAQSGVDASKDLAA
Ga0062384_1009523871	3300004082	Bog Forest Soil	MKRRELIRAGVLSGAVAAALHPRLALAQGGSPSPSSELTPAQSGVDASKDLAA
Ga0062387_1010768161	3300004091	Bog Forest Soil	MKRRELIRAGFLAGAAAALRPPVGKAQNPVQSSELTPAQSGVDASKDLAAPGWKPL
Ga0062386_1003245221	3300004152	Bog Forest Soil	MKRRELIRAGVLSGAVAAALRPQLALAQGLSPSPELTPAQSGVDASKDLAAPGWKPLFLDEH
Ga0062590_1006422372	3300004157	Soil	MKRREMIRGSVLAGAFAAALRPALANAQSGAQSAAQTSELTPAQKGVDASKDLSAPGWK
Ga0062595_1013692072	3300004479	Soil	MKRRELLRAGALAGAVAALRPPVGQVQSQTQNQAQGQELTPAQSGVDASNDLAAPG
Ga0066680_109510911	3300005174	Soil	MKRRDLIRGSVLAGAAAALRPTLATAQSAAQQLSELTPAQSGVDASKDL
Ga0066684_104868221	3300005179	Soil	MKRRELLRAGVLASAAAALPRTPALAQNTAPSPELTPAQSGVDASKDLAAPGWKPLFLDA
Ga0066685_102906141	3300005180	Soil	MKRRDLIRGSVLAGAAAVLRPSLATAQSAAQQPSELTPAQSGVDASKDLA
Ga0066685_110952781	3300005180	Soil	MKRRDFVRGSVLAGGAAVLRPSLATAQSAAQQPSELTPAQSGVDASKDLA
Ga0066671_105311152	3300005184	Soil	MKRRDLIRGSVLVGAAAALRPSLATAQSAAQQPSELTPAQRGVDASKDLAAPGWKPLFLDEHQNETLIVLSD
Ga0066388_1013272703	3300005332	Tropical Forest Soil	MKRRELLRASVFAGAAVAFPHRAAVAQSVTRASELTPAQSGVDASKDLEAPGWKPLFLDEHQNQTLILLS
Ga0066388_1049663761	3300005332	Tropical Forest Soil	MKRRELLKAGAFAGAVAALGPPMAQGQDTKANSELTPAQSGVDASNDLSAAGWKPKFLDEHQNETLILL
Ga0070709_113101641	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKRRELLRAGVLTGAALALRPPSASGQNPATAPGSELTPAQRGVDASKDLAAAGWKPLLLDEHQNETLIVLS
Ga0070714_1008393941	3300005435	Agricultural Soil	MKRRELLRAGLLTGAAAALHPPRAQAQNTAPPSELTPAQSGVDASKDLSSPN
Ga0070701_110861701	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MKRRELLRAGVLAGAVAALRPPVGQVQSQTQNQAQGQELTPAQSGVDASN
Ga0070706_1014755352	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKRRELIRRGVFAGAVAALRPGLRMAQGATQSADNAGPSELTPAQKGVDASTDLAGAGWKPLFLDEHQNETLIVLSDLM
Ga0066699_108950302	3300005561	Soil	MKRRELLRASVITGATAALGSSLSIAQTAAQTPAPTSELTPAQRGVDASNDLAAPGWKPLFLDEHQNET
Ga0066706_102057053	3300005598	Soil	MKRRELIRRGVFAGAVAALRPGLGMTHSGTQAAGTAGSSELTPAQSGVDASKDLAGAGWKPLFLDEHQNE
Ga0070762_112510521	3300005602	Soil	MKRREMLRAGVLVGAAAALHPALSNAQSGAQGTAPPSELTPAQSGVDASKD
Ga0068860_1027410162	3300005843	Switchgrass Rhizosphere	MKRRELLKAGAFAGAVAALRPPIVQAQDGKANAELTPAQSGVDASGDLAAPGWKPKFFDEHQ
Ga0066789_100146965	3300005994	Soil	MKRRDLLRAGVLTGAAAALRPPLAVAQNASQTTVAPSELTPAQRGIDASKDLAAPGWKPLFLDEHQNE
Ga0075029_1013072211	3300006052	Watersheds	MKRREMLRASVLAGAAAALSPALTDAQNGAQSTAQQPSELTPAQSGVDASKDLSAPGWKPLFLDEHQNETLI
Ga0075019_110909882	3300006086	Watersheds	MKRRELLRAGFLAGAAAALRPPVGKAQSATQSSELTPAQSGVDASKDLAAPGWKPLFLDEHQNETLIV
Ga0070716_1009395262	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MKRRELLRASVITGATAALGSSLSIAQNAAQTQAPTPELTPAQRGVDASNDLAAPGWKP
Ga0070712_1004081482	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKRRDLLRVGVFTGAAAALVPPRASAQNRAPAQAAELTPAQRGVDASKDLAGPNWKPLFLDE
Ga0070765_1010141141	3300006176	Soil	MKRREMLRASVLVGAAAALRPALSNAQSGAQGTAPPSELTPAQSGVDASKDLAAPGWKPL
Ga0070765_1017805382	3300006176	Soil	MKRREMLRASVLAGAAAALSPALSNAQTGIQSGPQSPAPPSELTPAQSGVDASKDLSGPGWKPLFLDEHQNET
Ga0075021_107758751	3300006354	Watersheds	MKRRDLLRAGVLTGAAAALSAQKSLAQSPQQSAGAPPASELTPAQRGVDTSKDLAGPSWKPLFLDEHQNATLIILS
Ga0079220_107627142	3300006806	Agricultural Soil	MKRRDMIRASIFTGAAAAALRAPLAAAQNPPPPSELTPAQSGVDASKDLSSPNWKPLFLDDHQNE
Ga0075433_118578981	3300006852	Populus Rhizosphere	MKRRELLKAGAFAGAVAALHPTMAQAQDPKANAELTPAQSGVDASNDLAAPGWKPKFLDEHQNE
Ga0075425_1011422911	3300006854	Populus Rhizosphere	MKRRELLRAGAFAGAVAALRPPLGQAQNPAQGAELTPAQTGVDASNDLAAAGWKPLFLDEHQNETLIVL
Ga0075434_1021638091	3300006871	Populus Rhizosphere	MKRRELLRAGVIAGAAAAALRPSVTVAQDTKQTPSELTPAQSGADASNDLAAPNWKPLF
Ga0073928_112340261	3300006893	Iron-Sulfur Acid Spring	MKRRDLLRAGVLTGAAVALRPARAPAQSATQDAAQTPELTPAQRGVDASKDLAAPGWKPLFLDEHQNETLIVLS
Ga0075426_103321653	3300006903	Populus Rhizosphere	MKRRELLRAGVIAGAAAAALRPSVTVAQDTKQTPSELTPAQSGADASNDLAAPN
Ga0075426_104657311	3300006903	Populus Rhizosphere	MKRRELLRAGALAGAVAALRPPVGQVQSQTQNQAQGQELTPAQSGVDASNDLAAPGWK
Ga0075436_1004509502	3300006914	Populus Rhizosphere	MKRRELLKAGAFAGAVAALHPTMAEAQDTKANAELTPAQSGVDASNDLAAPGWKAKFLDEHQNETLIVLSD
Ga0066709_1042966341	3300009137	Grasslands Soil	MKRRELLRASVITGATAALGSSLSIAQTAAQAPAPTSELTPAQRGVDASNDLAAPGWKPLFLDEHQNETLIILSDLIIP
Ga0116214_14189701	3300009520	Peatlands Soil	MKRRELIRAGFLAGAAAALRPPLGKAQSAAQSSELTPAQSGVDAS
Ga0126380_101019372	3300010043	Tropical Forest Soil	MKRRELLRAGMITGAAAALSTSLASAQNAPQGAPQPDELTPAQKGVDASKDLAAPGW
Ga0074046_105235651	3300010339	Bog Forest Soil	MKRREMLRASVLAGAAAALSPALSNAQGGAQSGAQSPTQPSELTPAQSGVDASKDLSAPGWKPLFLD
Ga0126370_104419612	3300010358	Tropical Forest Soil	MKRRELLRASVVTGAAAALSASLSATQKQEQKPAEPNELTPAQRGIDASKDLSAPGWKPFFLDE
Ga0126370_106666501	3300010358	Tropical Forest Soil	MKRRELLKAGAFAGAVAALGPPMAQGQDTKANSELTPAQSGVDASNDLSAAGWKPKFL
Ga0126376_131212101	3300010359	Tropical Forest Soil	MKRRELLKAGAFAGAVATLRPSIGQAQDGKANAELTPAQSGVDASNDLAAPGWKPKFFDEHQNETLIVL
Ga0126372_120796262	3300010360	Tropical Forest Soil	MKRRELIRGGVLAGAVVALQPGARMGQNTPQAAATGQVSELTPAQSGVDAAKDLAAPGWKPRFLDEHQNETLIVLSDLM
Ga0126377_122177081	3300010362	Tropical Forest Soil	MKRRELLRATAITGAAAALSTSIPAAQKEEGKAVETTELTPAQRGIDASKDLSAPGWKPLFLDEHQNETLII
Ga0134126_103921811	3300010396	Terrestrial Soil	MKRREMIRGSVLAGAFAAALRPALANAQSGAQSAAQTSELTPAQKGVDASKDLSAP
Ga0150983_133642833	3300011120	Forest Soil	MKRRELIRAGFLAGAAAALRPPIGKAQSAAQSSELTPAQGGVDA
Ga0137364_108100642	3300012198	Vadose Zone Soil	MKRRDFVRGSVLAGGAAVLRPSLATAQSAAQQPSELTPAQSGVDASKDLAGPGWKPLFLD
Ga0137383_101360203	3300012199	Vadose Zone Soil	MKRRDFVRGSVLAGGAAVLRPSLATAQSAAQQPSELTPAQSGVDASKDLAGPGW
Ga0137363_112583742	3300012202	Vadose Zone Soil	MKRRDLLRAGVLTGAVAALQPPRSIAHATAQGSSAPSELTPAQRGIDASKDLGAPGWKPLFLDEHQN
Ga0137360_103507231	3300012361	Vadose Zone Soil	MKRRELIRAGFIAGAAAALRPSLGKAQSTLQSSELTPAQSGVDASKDLAAPG
Ga0137359_101213091	3300012923	Vadose Zone Soil	MKRRELIRGGVLAGAVAAALRPSVGMAQNATQATGTAGPSELTPAQSGVDASKDLAAPGWKPLFLDEHQNETLIV
Ga0137404_105539822	3300012929	Vadose Zone Soil	MKRRELIRRGVFAGAVAALRPGLGMTQSAAQAAGNAGSSELTPAQSGVDASKDLAGAGWKPLFLDE
Ga0126369_101261773	3300012971	Tropical Forest Soil	MKRRELLRASVITGAAAALGSSLSNAQSTAQGAPQPDELTPAQKGVDASKDLSAPGWKPLFLDEHQNETLIILSDLMIP
Ga0126369_110659591	3300012971	Tropical Forest Soil	MKRRELLRAGMITGAAAALSTSLTSAQNAPQAAPQPDELTPAQKGVDA
Ga0126369_136437311	3300012971	Tropical Forest Soil	MKRRELLKTGAFAGAVAALRPPFGQGQDAKSNTGLTPAQSGVDASNDLAAPGWKPKFLDEHQNETLIV
Ga0134110_100856711	3300012975	Grasslands Soil	MKRRDFVRGSVLAGGAAVLRPSLATAQSAAQQPSELTPAQSGVDASKDLAGPGWKPLF
Ga0134078_102472732	3300014157	Grasslands Soil	MKRRDLIRGSVLVGAAAALRPSLAAAQSVAQQPSELTPAQSGVDASK
Ga0173480_111813412	3300015200	Soil	MKRRELLKAGAFAGAVAALRPPVARGQDTKANTELTPAQSGVDASNDLAAPGWKPKFFDEHQ
Ga0210407_101460554	3300020579	Soil	MKRRDLIRAGVLTGTVAALRQPLSMAQDPAQASELTPAQRGVDASKELAGSGWKPLFLDEHQNETLIVL
Ga0210407_106271192	3300020579	Soil	MKRRELIRAGVLMGAAAALRPRRTMAQSAAQSSELTPAQSG
Ga0210399_100004261	3300020581	Soil	MKRRDLIRAGVLTGAAAALRPPLARAQIAAPPSELTPAQSGVDASKDLAAPGWKPLF
Ga0210399_105897692	3300020581	Soil	MKRRELIRAGILSGAVAAALRPRLTSAQGVSPSSELTPAQKGVDASKDLAAPGWKPLFLDEHQNET
Ga0210399_109400031	3300020581	Soil	MKRRELIRAGFLTGAAAALRPPLGTAQSTALSSELTPAQSGVDASKDLAAPGWKPLFL
Ga0210395_103817991	3300020582	Soil	MKRREMLRTSVLAGAAAALRPALANAQGTAQNAAPPSELTPAQSGVDASKELEGAGWKPLFLDQHQN
Ga0210395_112781341	3300020582	Soil	MKRRELIRAGILSGAVAAALRPQLALAQAASPSSELTPAQRGV
Ga0210401_109683291	3300020583	Soil	MKRREMLRASVLAGAAAALSPALSNAQSGTQNGAQSPAPSSELTPAQRGVDASKE
Ga0215015_107752761	3300021046	Soil	MKRRELIRAGVFAGAVAALRPPHGMAQSAGQSSELTPAQSGVDASKDLAAPGWKPLFLDEHQNETLIVLSDLTVS
Ga0210406_105231522	3300021168	Soil	MKRREMLRASVLAGAAAALRPVVSNGHSGAQSSVQPSELTPAQSGVDASKDLSAPGWKPLFLDEHQNETLIVLSDL
Ga0210396_102341751	3300021180	Soil	MKRREMLRASVLAGAAAALRPALSSAQSGAQGNAPLPELTPAQNGVDASK
Ga0210393_110147882	3300021401	Soil	MKRRELLRAGAFAGAVAALRTPLAVPQSATKSPELTPAQSGVDASQDLANPNWKPLFLADHQNE
Ga0210386_101250471	3300021406	Soil	MKRREMLRASVLAGAAAALRPVVSNAQSGAQSSVQPSELTPAQSGVDASKDLAAPGWKPLFLDEHQ
Ga0210394_117221512	3300021420	Soil	MKRREMLRASVLAGAAAALRPAIVNAQSGTQSAGQQPSELTPAQSGVDASK
Ga0210402_108747512	3300021478	Soil	MNRRDLLRASVLTGAVAALRSPAAIGQSPQQPSELTPAQSGVDSSKDLASPNWKPLFLNEHQNET
Ga0210402_119083481	3300021478	Soil	MKRRELIRAGFLAGAAAALRPPLGKAQSAAQSTELTPAQGGVDA
Ga0210409_101021911	3300021559	Soil	MKRRDLLRAGVLTGAAVALRPPRSTAQSGAQDAAQTAELTPAQRGVDASKELAAPGWKPLFLDE
Ga0242660_12229471	3300022531	Soil	MKRRELIRAGFLAGAAAALRPSVGKAQSAAQSSELTPAQSGVDASKDLAAPGWKPLFL
Ga0212123_106208902	3300022557	Iron-Sulfur Acid Spring	MKRRDLLRAGVLTGAAVALRPARAPAQSATQDAAQTPELTPAQRGVDASKDL
Ga0224551_10462471	3300023259	Soil	MKRRDLLRAGVLTGAAAALRSPLAVGQSAAQDPASELTPAQRGVDASKDLAAPGWKP
Ga0247669_10509453	3300024182	Soil	MKRRELLRASVITGAAAALGTSLSATQNPAQDSTPASELTPAQRGLDASNDLAAPGWKP
Ga0207660_110339921	3300025917	Corn Rhizosphere	MKRREMIRGSVLAGAFAAALRPALANAQSGAQSAAQTSELTPAQKGVDASKDLSAPGWKPVFLDEH
Ga0209240_12228831	3300026304	Grasslands Soil	MKRRELIRAGFIAGAAAALRPSLAKAQSAAQSSELTPAQSGVDASKDLTAPGWKPLFLD
Ga0209239_12490621	3300026310	Grasslands Soil	MKRRELLRASVITGATAALGSSLSIAQTAAQAPAPTSELTPAQRGVDASNDLAAPGWKPLFLDEHQNE
Ga0209154_11382492	3300026317	Soil	MKRRDLIRGSVLAGAAAALRPSLAAAQSVAQQPSELTPAQSGVDASKDLAAPGWKPLFLDEHQNETLIV
Ga0209473_12601211	3300026330	Soil	MKRRELLRAGVLASAAAALPRTPALAQNTAPSPELTPAQSGVDASKDLAAPGWKPLFLD
Ga0257171_10838221	3300026377	Soil	MKRRELLRAGVLTGATAALTSSLSMAQSAAQTSAQSSELTPAQRGVDASNDLSAPGWKPLFLDEHQSETLTILSDLIIP
Ga0257156_11256951	3300026498	Soil	MKRRDLLRAGVLTGATAALTSSLSMAQSAAQTTPQSSELTPAQRGVDASNDLSAPGWKPLFL
Ga0209160_11569891	3300026532	Soil	MKRRELLRAGVLASAAAALPRTPALAQNTAPSPELTPAQSGVDASKDLAAPGWKPLFLDAHQNETLI
Ga0209729_10525741	3300027061	Forest Soil	MKRRELLRAGVLASAAAALPRTPALAQNTAPSPELTPAQSGVDASKDLAAPGWKPLFLDAHQNETLIVLS
Ga0209214_10094402	3300027071	Forest Soil	MKRRELLRAGVLASAAAALPRTPALAQNTAPSPELTPAQSGVDASKDLAAPG
Ga0209772_101638152	3300027768	Bog Forest Soil	MKRRELIRAGVLSGAVAAALHPRLALAQGGSPSPSSELTPAQSGVDASKDLAAPGWKPLFLDEHQNETLI
Ga0170823_122260472	3300031128	Forest Soil	MKRRELIRAGFIAGAAAALRPPLVKAQSAAQSSELTPAQSGR
Ga0307474_101816993	3300031718	Hardwood Forest Soil	MKRRELIRAGVLSGAVAAALQPKLALAQGVSPSSELTPAQSGVDASKDLAAPGWKPLFLDEHQ
Ga0307469_101871372	3300031720	Hardwood Forest Soil	MKRRELLKAGAFAGAVAALRPPVAQGQDTKANTELTPAQSGVDASNDLAAPGWKPKFLDEHQNQTLIVLSDLII
Ga0307469_115424252	3300031720	Hardwood Forest Soil	MKRRELLQAGAFAGAVAVLRPPLGQAQNPTQGAELTPAQTGVDASNDLAAAGWKPLFLDEHQ
Ga0318546_102460751	3300031771	Soil	MKRRELLKAGAFAGAVAAFGPPRVEGQDSKANSELTPAQSGMDASNDLAAPGWKPKFFDEHQNETLIVLS
Ga0318568_102480072	3300031819	Soil	MKRRELLKAGAFAGAVAAFGPPRVEGQDSKANSELTPAQSGVDASNDLAAPGWKPKFFDEHQNETLIVLSDLII
Ga0310913_103030391	3300031945	Soil	MKRRELLKAGAFAGAVAAFGPPRVEGQDSKANSELTPAQSGVDASNDLAAPGWKPKFFDEHQNETLIVLSDLIIPAT
Ga0307479_106224143	3300031962	Hardwood Forest Soil	MKRRELLRASVITGATAALGSSLSIAQPAAQTPAPTSQLTPAQRGIDASNDLAAPGWKPLFLDEHQN
Ga0307470_119011981	3300032174	Hardwood Forest Soil	MKRRELLRAGAVAGAVAALRPPLAAPQTAAKSPELTPAHSGDDASQDRTNPKWKPLYLDDQQNATLI
Ga0307471_1022633051	3300032180	Hardwood Forest Soil	MKRRELLRAGAVAGAVAALRPPLAAPQTAAKSPELTPAQSGVDASQDLTNPNWKPL
Ga0335081_117648831	3300032892	Soil	MKRRELIRAGMFAGAVAAIHPPVVGAQSAQSAIPAPPDSQLTPAQRGVDASSDLAAANWKPLFLD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092580

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences