Metagenome Family F092558

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092558
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	58 residues
Representative Sequence	VRRLAFLLAGLALLGAGCGGKSSSGATGHLVIAVDVPVTGSPYVAQTIRQGVELA
Number of Associated Samples	96
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	71.03 %
% of genes near scaffold ends (potentially truncated)	99.07 %
% of genes from short scaffolds (< 2000 bps)	91.59 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (75.701 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (22.430 % of family members)
Environment Ontology (ENVO)	Unclassified (31.776 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.533 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 18.07% β-sheet: 0.00% Coil/Unstructured: 81.93%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00005	ABC_tran	45.79
PF12399	BCA_ABC_TP_C	22.43
PF02653	BPD_transp_2	9.35
PF08669	GCV_T_C	0.93
PF00890	FAD_binding_2	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.70 %
Unclassified	root	N/A	24.30 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	75.70 %
Unclassified	root	N/A	24.30 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.70 %
Unclassified	root	N/A	24.30 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	59.81 %
Unclassified	root	N/A	24.30 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	58.88 %
Unclassified	root	N/A	24.30 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.30 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	22.43 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	6.54 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.30 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	22.43 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	6.54 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.30 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	22.43 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	6.54 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.30 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	22.43 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	6.54 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.30 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	22.43 %
unclassified Solirubrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter	5.61 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.30 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	22.43 %
Solirubrobacter sp. URHD0082	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	5.61 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_109389364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	593	Open in IMG/M
3300000956\|JGI10216J12902_111190600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	539	Open in IMG/M
3300000956\|JGI10216J12902_116335027	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300001205\|C688J13580_1063662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	515	Open in IMG/M
3300002568\|C688J35102_118766051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	594	Open in IMG/M
3300004479\|Ga0062595_101223524	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300004633\|Ga0066395_10742738	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300005179\|Ga0066684_10979970	Not Available	547	Open in IMG/M
3300005332\|Ga0066388_100109795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3250	Open in IMG/M
3300005434\|Ga0070709_11560014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	537	Open in IMG/M
3300005445\|Ga0070708_101800050	Not Available	568	Open in IMG/M
3300005446\|Ga0066686_10980165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	550	Open in IMG/M
3300005459\|Ga0068867_101847404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	569	Open in IMG/M
3300005467\|Ga0070706_101254776	Not Available	680	Open in IMG/M
3300005526\|Ga0073909_10005455	All Organisms → cellular organisms → Bacteria	3750	Open in IMG/M
3300005535\|Ga0070684_101296482	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300005543\|Ga0070672_100897150	Not Available	783	Open in IMG/M
3300005548\|Ga0070665_101736967	Not Available	631	Open in IMG/M
3300005549\|Ga0070704_100553226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	1006	Open in IMG/M
3300005549\|Ga0070704_101102751	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300005615\|Ga0070702_100624653	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300005843\|Ga0068860_100928393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	887	Open in IMG/M
3300006173\|Ga0070716_101489034	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300006755\|Ga0079222_11245715	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300006806\|Ga0079220_11190330	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300006852\|Ga0075433_10513723	All Organisms → cellular organisms → Bacteria	1054	Open in IMG/M
3300006854\|Ga0075425_100149291	All Organisms → cellular organisms → Bacteria	2677	Open in IMG/M
3300006854\|Ga0075425_101650641	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300006871\|Ga0075434_101666270	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300006903\|Ga0075426_10316582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1143	Open in IMG/M
3300006903\|Ga0075426_10664138	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300006914\|Ga0075436_100623270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	796	Open in IMG/M
3300006914\|Ga0075436_101111508	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300009092\|Ga0105250_10353192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	644	Open in IMG/M
3300009148\|Ga0105243_11429219	Not Available	713	Open in IMG/M
3300009174\|Ga0105241_10590836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1002	Open in IMG/M
3300009840\|Ga0126313_10035521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3447	Open in IMG/M
3300010036\|Ga0126305_10975048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	581	Open in IMG/M
3300010038\|Ga0126315_10166832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1312	Open in IMG/M
3300010038\|Ga0126315_11049445	Not Available	548	Open in IMG/M
3300010040\|Ga0126308_10726535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	684	Open in IMG/M
3300010303\|Ga0134082_10319333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	653	Open in IMG/M
3300010360\|Ga0126372_12303932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	588	Open in IMG/M
3300010397\|Ga0134124_10432672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1259	Open in IMG/M
3300010398\|Ga0126383_11988744	Not Available	669	Open in IMG/M
3300011994\|Ga0120157_1075158	Not Available	689	Open in IMG/M
3300012011\|Ga0120152_1180948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	539	Open in IMG/M
3300012198\|Ga0137364_10152876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1670	Open in IMG/M
3300012207\|Ga0137381_10573349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	984	Open in IMG/M
3300012211\|Ga0137377_10613084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1025	Open in IMG/M
3300012355\|Ga0137369_10392904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1002	Open in IMG/M
3300012500\|Ga0157314_1052162	Not Available	526	Open in IMG/M
3300012507\|Ga0157342_1006761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1096	Open in IMG/M
3300012958\|Ga0164299_11662533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	505	Open in IMG/M
3300012977\|Ga0134087_10655370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	551	Open in IMG/M
3300012989\|Ga0164305_10499114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	957	Open in IMG/M
3300013104\|Ga0157370_11615504	Not Available	582	Open in IMG/M
3300018027\|Ga0184605_10143647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1071	Open in IMG/M
3300021418\|Ga0193695_1132704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	513	Open in IMG/M
3300021510\|Ga0222621_1013192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1595	Open in IMG/M
3300022756\|Ga0222622_10517171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	854	Open in IMG/M
3300022915\|Ga0247790_10085042	Not Available	765	Open in IMG/M
3300024187\|Ga0247672_1096245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	517	Open in IMG/M
3300025899\|Ga0207642_10369064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	851	Open in IMG/M
3300025901\|Ga0207688_10023601	All Organisms → cellular organisms → Bacteria	3370	Open in IMG/M
3300025903\|Ga0207680_10623994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	771	Open in IMG/M
3300025921\|Ga0207652_10957923	Not Available	754	Open in IMG/M
3300025939\|Ga0207665_11156647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	617	Open in IMG/M
3300025972\|Ga0207668_11173756	Not Available	689	Open in IMG/M
3300026023\|Ga0207677_10089921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	2230	Open in IMG/M
3300026329\|Ga0209375_1252812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	590	Open in IMG/M
3300026523\|Ga0209808_1260817	Not Available	553	Open in IMG/M
3300026552\|Ga0209577_10416299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	958	Open in IMG/M
3300027787\|Ga0209074_10155039	Not Available	827	Open in IMG/M
3300028381\|Ga0268264_11444956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	698	Open in IMG/M
3300028587\|Ga0247828_10365871	Not Available	819	Open in IMG/M
3300028597\|Ga0247820_10872558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	636	Open in IMG/M
3300028711\|Ga0307293_10071534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1090	Open in IMG/M
3300028714\|Ga0307309_10008380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1799	Open in IMG/M
3300028717\|Ga0307298_10159901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	656	Open in IMG/M
3300028718\|Ga0307307_10166529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	692	Open in IMG/M
3300028718\|Ga0307307_10194246	Not Available	641	Open in IMG/M
3300028722\|Ga0307319_10074406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1077	Open in IMG/M
3300028722\|Ga0307319_10153605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	747	Open in IMG/M
3300028744\|Ga0307318_10205282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	682	Open in IMG/M
3300028771\|Ga0307320_10007084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	3998	Open in IMG/M
3300028771\|Ga0307320_10075710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1262	Open in IMG/M
3300028791\|Ga0307290_10307799	Not Available	580	Open in IMG/M
3300028793\|Ga0307299_10023818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	2202	Open in IMG/M
3300028807\|Ga0307305_10009493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4257	Open in IMG/M
3300028810\|Ga0307294_10201950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	687	Open in IMG/M
3300028814\|Ga0307302_10206950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	958	Open in IMG/M
3300028875\|Ga0307289_10100926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1178	Open in IMG/M
3300028875\|Ga0307289_10463014	Not Available	521	Open in IMG/M
3300028880\|Ga0307300_10245814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	592	Open in IMG/M
3300031226\|Ga0307497_10727938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	514	Open in IMG/M
3300031547\|Ga0310887_10390719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	817	Open in IMG/M
3300031716\|Ga0310813_10576492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	993	Open in IMG/M
3300031740\|Ga0307468_100477312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	981	Open in IMG/M
3300031847\|Ga0310907_10628019	Not Available	588	Open in IMG/M
3300031939\|Ga0308174_11568963	Not Available	565	Open in IMG/M
3300032075\|Ga0310890_10165792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1479	Open in IMG/M
3300032122\|Ga0310895_10474814	Not Available	625	Open in IMG/M
3300032174\|Ga0307470_11378588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	581	Open in IMG/M
3300032421\|Ga0310812_10412869	Not Available	607	Open in IMG/M
3300032770\|Ga0335085_11259416	Not Available	783	Open in IMG/M
3300033550\|Ga0247829_10918735	Not Available	728	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.57%
Host-Associated	Host-Associated	22.43%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.77%
Plants	Host-Associated → Plants	22.43%
Aquatic	Environmental → Aquatic	2.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.95%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.48%
Sediment	Environmental → Aquatic → Sediment	2.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.75%
Loam	Environmental → Terrestrial → Soil → Loam	13.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.21%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.48%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.21%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.35%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.48%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.48%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.80%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.87%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.48%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.48%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	4.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.87%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.87%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.87%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001205	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011994	Permafrost microbial communities from Nunavut, Canada - A7_65cm_12M	Environmental	Open in IMG/M
3300012011	Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012500	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.old.080610	Host-Associated	Open in IMG/M
3300012507	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610	Host-Associated	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300022915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4	Environmental	Open in IMG/M
3300024187	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK13	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1093893642	3300000956	Soil	VRRLAFLLAGLALLAAGCGKGSSRDEAGQVVIAVDVPVTGSPYVAETIRQGVELATSNVNGGGGVRVGSKS
JGI10216J12902_1111906001	3300000956	Soil	VRRLVLLLAGLALLAAGCGKGSSRDEAGQVVIAVDVPVTGSPYVAETIRQGVELATSNVNGGGGVRVGSKS
JGI10216J12902_1163350271	3300000956	Soil	VNVGRLVFLLAGLALLAAGCGKSSGVEATGKIVIAVDVPVTGSPYVAQTIRNGVQLA
C688J13580_10636622	3300001205	Soil	VRRIAFLLAGLALLAAGCGKSSGAKDAAEHLVIAVDVPVTGSPYVAQTIRQGVALAASNLNGGGGMRVGS
C688J35102_1187660511	3300002568	Soil	VRRLALFLAGFALLAAGCGKSGSSGASGRLVIAVDVPVTGSPYVAQTIRQGVELAASNLNGGGGIRLGSK
Ga0062595_1012235242	3300004479	Soil	MRPAVLVFLCVAVVAAGCGKSRASGGNIVIAVDVPVTGSPYIAQTIRQGVALAANNLNSGGGVIV
Ga0066395_107427382	3300004633	Tropical Forest Soil	VRRGLFLLVGLALLAAGCGKSSSNSDLGKLTVAVDVPVTGSPYVAQTIRQGLELATTNLNAG
Ga0066684_109799701	3300005179	Soil	VRRAILLLACVSLLAAGCGKSSRASGGKIVIAVDVPVTGSPYVAQTIRQGVALAANNLNS
Ga0066388_1001097954	3300005332	Tropical Forest Soil	VGLALLATGCGKSSSSGDLGHLTVAVDVPVTGSPYVAQTIRQGVELATSNLNAGGGVR
Ga0070709_115600142	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VRRLVLFLAGLALLAAGCGKGSSHATGQVVIAVDVPVTGSPYIAQTIRQGVE
Ga0070708_1018000502	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VRRLAFLLAGLVLLAAGCGKGSSSGEAGRLVVAVDVPVTGSPY
Ga0066686_109801652	3300005446	Soil	VRRTGVLLVALVLLAGGCGKSSPKGIGKVVVAVDVPVTGSPYIAQTVRHGVELAASNLNG
Ga0068867_1018474041	3300005459	Miscanthus Rhizosphere	VRRLAFLLAGLALIAAGCGKSSGGDSTGRLVVAVDVPVTGSPYVAQTVRNGVRLATDNVNGS
Ga0070706_1012547762	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VRRLAFLFAGLVLLAAGCGKGSSSGETGRLVVAVDVPVTGSPYVADTIRQGVELATSN
Ga0073909_100054551	3300005526	Surface Soil	VRRLVILLAGVALLAAGCGGSSKSSSPKNLVIGVDVPVTGSPYIAQTIRQGVELATSNLN
Ga0070684_1012964821	3300005535	Corn Rhizosphere	VRRLVILLAGISVLAAGCGGSSTSSSPKNLVIAVDVPVTGSPYIAQTIRQGVELATSNLNGGGG
Ga0070672_1008971502	3300005543	Miscanthus Rhizosphere	VRRLAFLLAGLVLLAAGCGKGSSSGEAGRLVVAVDVPVTGSPDVADTIRQGVEL
Ga0070665_1017369672	3300005548	Switchgrass Rhizosphere	VRRLAFLLAGLALLGAGCGGKSSSGTTGHLVIAVDVPVTGSPYAAQTIRQGVELAASNLN
Ga0070704_1005532261	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VRRLAFLLAGLALIAAGCGKSSGGDSTGRLVVAVDVPVTGSPYVAQTVRNGVQLAADNVNGS
Ga0070704_1011027511	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VRRLVILLAGVALLAAGCGGSSKSSSPKNLVIAVDVPVTGSPYIAQTIRQGVELATSNLNGGGGVRVG
Ga0070702_1006246532	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	VRRLVILLAGVALLAAGCAGSSTSSSPKNLVIAVDVPVTGSPYIAQTIRQGVEL
Ga0068860_1009283932	3300005843	Switchgrass Rhizosphere	VRRLAFLLAGLALIAAGCGKSSSGDSTGRLVVAVDVPVTGSPYVAQTVRNGVQLAADNVNGSGGIRVGS
Ga0070716_1014890341	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VRRALLLLACVAVLAAGCGKSSRSSGGDVVIAVDVPVTGSPYVAQNIRHGVALAANNLNSGGGI
Ga0079222_112457152	3300006755	Agricultural Soil	MRRVVLLIACVAVLAAGCGKSSRASGGDIVVAVDVPVTGSPYVEQNIRHGVALAANNLNSGGGI
Ga0079220_111903302	3300006806	Agricultural Soil	VRRLVILLAGVAVLAAGCGGSSTSSSSKNLVVAVDVPVTGSPYIAQTIRQGVEL
Ga0075433_105137231	3300006852	Populus Rhizosphere	VSRLVFLLAGLALLAAGCGKSSGGEATGKIVIAVDVPVTGSPYVAQTIRHGVQLAAGNLNGSGGIRIGDRSYRL
Ga0075425_1001492911	3300006854	Populus Rhizosphere	VNVSRLAFLLAGLALLVAGCGKSSGGEATGKIVIAVDVPVTGSPYVAQTIRNGVR
Ga0075425_1016506411	3300006854	Populus Rhizosphere	VSRLVFLLAGLALLAAGCGKSSGGEATGKIVIAVDVPVTGSPYVAQTIR
Ga0075434_1016662702	3300006871	Populus Rhizosphere	VRRLVILLAGVALLAAGCGGSSKSSSPKNLVIAVDVPVTGSPYIAQTIRQGVELATSNLNGGGGVRAGKQSYML
Ga0075426_103165821	3300006903	Populus Rhizosphere	VRRLVILLAGVALLAAGCGGSSKSSSPKNLVIAVDVPVTGSPYIAQTIRQG
Ga0075426_106641381	3300006903	Populus Rhizosphere	VRRGLFLFVGLALLAAGCGKSSSNSSDLGHLTVAVDVPVTGSPYVAQTIRQGLELATANLNAGGGV
Ga0075436_1006232701	3300006914	Populus Rhizosphere	VSRLVFLLAGLALFASGCGGSSGGEATGRIVIAVDVPVTGSPYVAQTIRHGVQLAADNLNGSGGIRIGDRSYRIAV
Ga0075436_1011115082	3300006914	Populus Rhizosphere	VRGVILLLSGLALLVAGCGKSARASGGNIEIAVDVPVTGSPYVAENIRHGVALAANNLNSGG
Ga0105250_103531921	3300009092	Switchgrass Rhizosphere	VRRLAFLLAGLALIAAGCGKSSGGDSTGRLVVAVDVPVTGSPYVAQTVRNGVQL
Ga0105243_114292191	3300009148	Miscanthus Rhizosphere	VLLLAGLALLAAGCSKGSSRDEAGRLVIAVDVPVTGSPY
Ga0105241_105908361	3300009174	Corn Rhizosphere	VRRLVIFLAGVALFAAGCGGSSTSSSPKNLVIAVDVPVTGSPYIAQTIRQGVE
Ga0126313_100355211	3300009840	Serpentine Soil	VGLALLAAGCGKDSSSSDLGHLTVVVDVPVTGSPYIAQTIRQGVELATSNLNAGGGVRAGDK
Ga0126305_109750482	3300010036	Serpentine Soil	VRRGLFLLAGLALLAAGCGKSSGGSDLGHLTVAVDVPVTGSPYIAQTIRQGVELATSNLNAGGGVRAGE
Ga0126315_101668322	3300010038	Serpentine Soil	VRRLAFLLAGLALIAAGCGKSSDADSPGRIVIGVDVPVTGSPYVAQTIKQGVELAVGNLNGSGGIRVS
Ga0126315_110494452	3300010038	Serpentine Soil	VRRLAFLLAGIALLTAGCGKSSGSKNELGRLVIAVDVPVTGSPYVAQT
Ga0126308_107265352	3300010040	Serpentine Soil	VRRLAFLLAGIALLTAGCGKSSGSKNELGRLVIAVDVPV
Ga0134082_103193332	3300010303	Grasslands Soil	VRRTAVLLAGLALVAGGCGKSSPKGIGKVVVAVDVPVTGSPYIAQTIRHGVELAASNLNG
Ga0126372_123039322	3300010360	Tropical Forest Soil	VRRLAILLAGVALLAGGCGGSNKTATAKRLVIAVDVPVTGSPYIAQTIRQGVELATSNLNGAARGDLGG*
Ga0134124_104326721	3300010397	Terrestrial Soil	VRRLAFLLAGLALLGAGCGGKSSSGTTGHLVIAVDVPVTGSPYAAQTIRQGVELAASNLNGGGGLRI
Ga0126383_119887441	3300010398	Tropical Forest Soil	VRRLAILLAGVAVLAAGCGGSSTSSSPKNLVIAVDVPVTGSPY
Ga0120157_10751582	3300011994	Permafrost	VRRLAFLLAGLALIAVGCGKSSGADSPGRLVIAVDVPVTGSPYVSSSGRWWDVC
Ga0120152_11809482	3300012011	Permafrost	VRRLAFLLAGLALIAVGCGKSSGADSPGRLVIAVDVPVTGSPYVAQTIAQGVELAAGNLNGSGGIRVGARSYK
Ga0137364_101528761	3300012198	Vadose Zone Soil	VRRTAVLLVALALLGGGCGKSSPKGIGKIMVAVDVPVTGSPYIAQTIHHGVELAASNLNGGGGIL
Ga0137381_105733492	3300012207	Vadose Zone Soil	VRRAILLLACVALLAAGCGKSSRASGGKIVIAVDVPVTGSPYVAQTIRHGVALAAN
Ga0137377_106130842	3300012211	Vadose Zone Soil	VRRRAVLLLAVLALLAAGCGKSSRSTGGKVVIAVDVPVTGSPYVAQTIRHGVALATNNLNSGGGIVVG
Ga0137369_103929042	3300012355	Vadose Zone Soil	VRRLAFLLAGLALIVAGCGKSSGGDSTRRLVIAVDVPVAGSPYVA
Ga0157314_10521622	3300012500	Arabidopsis Rhizosphere	VRRLVIFLAGVALLAAGCGGSSTSSSPKNLVIAVDVPVTGSPYVA
Ga0157342_10067612	3300012507	Arabidopsis Rhizosphere	VSRLAFLLAGLALLVTGCGKSSGGEATGKIVIAVDVPVTGSPYVAQTIRNGVRLAADNLNGSGG
Ga0164299_116625331	3300012958	Soil	MRRTVVVLAGLALLAAGCGKSAHGSGGKVLVAVDIPVTGSPYIAQTIRHGVELATSGINS
Ga0134087_106553702	3300012977	Grasslands Soil	VRRAILLLACVSLLAAGCGKSSRASGGRIVIAVDVPVTGSPYVAQTIRHGVALAANN
Ga0164305_104991142	3300012989	Soil	VRRLAFLLAGLALLGAGCGGKSSSGAAGHLVIAVDVPVTGSPYV
Ga0157370_116155041	3300013104	Corn Rhizosphere	VRRLAFLLAGLVLLAAGCGKGSSSGETGRLMVAVD
Ga0184605_101436472	3300018027	Groundwater Sediment	VRRLAFLLAGLALIAAGCGESSGVDSPGRLVIAVDVPVTGSPYVAQTIKQGVELAAGNLN
Ga0193695_11327041	3300021418	Soil	VRRAVLLLASLALLAAGCGKASRSAGGKVVIAVDVPVTGSPYVAQTIRHGVALAANNLNSGGGIIVGTHA
Ga0222621_10131922	3300021510	Groundwater Sediment	VRRLVLLIAGLALLAAGCGKGSSDEAGRLVIAVDVPVTGSPYVAQTIRQGVELATSNLNG
Ga0222622_105171712	3300022756	Groundwater Sediment	VRRLAFLIAGLALLAAGCGKGSSEQAGRLVIAVDVPVTGSPYVAQTIRQGVELAASNL
Ga0247790_100850421	3300022915	Soil	VRRGLFLLVGLALLASGCGKSSSSSTDLGHLTVAVDVPVTGSPYVAQTIRQGLELATANLNAGGGVRAG
Ga0247672_10962452	3300024187	Soil	VRRLVILLAGVALLAAGCGGSTKSSSPKNLVIAVDVPVTGSPYIAQTIRQGVELATSNLNGGGGV
Ga0207642_103690641	3300025899	Miscanthus Rhizosphere	VRRLAFLFAGLVLLAAGCGKGSSSGEAGRLVVAVDVPVTGSPYVADTIRQGVELATSNLNGGGGVRVGSKSY
Ga0207688_100236014	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	VLAGLALLAAGCGKSGRESGGKVVVAVDIPVTGSPYIAQTIRQGLELATSGINSGGGLIV
Ga0207680_106239942	3300025903	Switchgrass Rhizosphere	VRRLVILLAGVALLAAGCGGSSKSSSPKNLVIAVDVPVTGSPYIAQTIRQGVELATSNLNGGGGVRV
Ga0207652_109579231	3300025921	Corn Rhizosphere	VRRLAFLFAGLVLLAAGCGKGSSSGEAGRLVVAVDVPVTGSPYVADTI
Ga0207665_111566472	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VRRVLLLLACVAVLAAGCGKSSRSSGGDVVIAVDVPVTGSPYVAQNIRHGVALAANNLNSGGGI
Ga0207668_111737561	3300025972	Switchgrass Rhizosphere	VRRLAFLLAGLALIAAGCGKSSGGDSTGRLVVAVDVPVTGSPYVAQTVRNGVQLAADNVNGSGGIRV
Ga0207677_100899213	3300026023	Miscanthus Rhizosphere	VRRLAFLLAGLVLLAAGCGKGSSSGEAGRLVVAVDVPVTGSPYVADTIRQGVEL
Ga0209375_12528122	3300026329	Soil	MRRAVLLLACVAVLVAGCGKSSRASGGKIVIAVDVPVTGSPYVAQTIRHGVALAA
Ga0209808_12608171	3300026523	Soil	VRRAILLLACVALLAAGCGKSSRASGGKIVIAVDVPVTGSPYVAQTIRNGVALAANSLNSGGGI
Ga0209577_104162991	3300026552	Soil	VRRAILLLACVSLLAAGCGKSSRASGGRIVIAVDVPVTGSPYVAQTIRHGVALAANNLNSGGGIIVGTHTYRIAVK
Ga0209074_101550391	3300027787	Agricultural Soil	VRRLVIFLAGVALLAAGCGGSSTSSSPKNLVIAVDVPVTGSPYIAQTIRQGVELATSNLNGGGGVRVGKQSYM
Ga0268264_114449562	3300028381	Switchgrass Rhizosphere	VRRLAFLLAGLVLLAAGCGKGSSSGETGRLVVAVDVPVTGSPYVADTIRQGVELATSNLNGGGGVRVGSKSY
Ga0247828_103658712	3300028587	Soil	VRRLAFLLAGLALLAAGCGKGSSRDEAGQLVIAVDVPVTGSPYVAETIRQ
Ga0247820_108725582	3300028597	Soil	MGLALLAAGCGKSSSSSSDLGHLTVAVDVPVTGSPYVAQTIRQGL
Ga0307293_100715341	3300028711	Soil	VRRALLLLAGLALVAAGCGGKSSRGASGRVVIAVDVPVTGSPYVAQTIRHGVELAANNLDAGGGIVVGSRNYR
Ga0307309_100083802	3300028714	Soil	VRRLAFLLAGLALLGAGCGGKSSSGAAGHLVIAVDVPVTGSPYVAQTIRQGVELATSNLNGGGGVRVGDKS
Ga0307298_101599012	3300028717	Soil	VRRLAFLLAGLALIAAGCGKSSDADSPGRIVIAVDVPVTGSPYVAQTIKQGVELAAGNLNGSGGIRVGSRSYKLVA
Ga0307307_101665291	3300028718	Soil	VRRALLLLAGLALVAAGCGGKSSREAAGRVVIAVDVPVTGSPYVAQTIRHGVE
Ga0307307_101942462	3300028718	Soil	VRRLAFLLAGLALIAAGCGKSSGGDSTGRLIVAVD
Ga0307319_100744062	3300028722	Soil	VRRLAFLLAGLALIAAGCGKSSGGDSTGRLVVAVDVP
Ga0307319_101536051	3300028722	Soil	VRRLAFLLAGLALIAAGCGKSSDADSPGRIVIAVDVPVTGSPYVAQTIKQGVELAAGNLNGSGGIRV
Ga0307318_102052822	3300028744	Soil	VRRLAFLLAGLALIVAGCGKSSDADSPGRIVIAVDVPVTGSPYVAETIKQGVELAAGNLN
Ga0307320_100070841	3300028771	Soil	VHRLAFLLAGLALLAAGCGGSSGSRNDVGSLVIAVDVPVSGSPYVAQTIRQGVELAASSLNAGGGIRAGARS
Ga0307320_100757101	3300028771	Soil	VRRLAFLLAGIALLAAGCGKSSDSKSDVGSLVIAVDVP
Ga0307290_103077991	3300028791	Soil	VRRLAFLLAGLALIAAGCGKSSGGDSTGRLVVAVDVPVTGSPYIAQTIR
Ga0307299_100238181	3300028793	Soil	VRRLAFLLAGLALIAAGCGKSSDADSPGRIVIAVD
Ga0307305_100094931	3300028807	Soil	VRRLAFLLAGLALLGAGCGGKSSSGATGHLVIAVDVPVTGSPYVAQTIRQGVELA
Ga0307294_102019501	3300028810	Soil	VRRLAFLLAGLALIAAGCGKSSDADSPGRIVIAVDVPVTGSPYVAQTIKQGVE
Ga0307302_102069501	3300028814	Soil	VRRLAFLIAGLALLAAGCGKGSSEQAGRLVIAVDVPVTGSPYVAQTIRQ
Ga0307289_101009262	3300028875	Soil	VRRLAFLLAGIALLGAGCGKSSDSKSDVGSLVIAVDVPVSGSP
Ga0307289_104630142	3300028875	Soil	VRRLAFLLAGLALIAAGCGKSSDADSPGRIVIAVDVPVTGSPY
Ga0307300_102458142	3300028880	Soil	VRRLAFLLAGLALIAAGCGKSSDADSPGRIVIAVDVPVTGSPYVAQTIKQGV
Ga0307497_107279381	3300031226	Soil	VRRLALLLAVLALLAVGCGKGSSSGEAGRLVIAVDVPVTGSPYVAQTIRQGVELATSNLNGGGGVR
Ga0310887_103907191	3300031547	Soil	VRRLVILLAGVALLAAGCGGSSKSSSPKNLVIAVDVPVTGSPYIAQTIRQGVELA
Ga0310813_105764921	3300031716	Soil	VRRLAFLLAGLALLGAGCGGKSSSGSTGRLVIAVDVPVTGSPYV
Ga0307468_1004773121	3300031740	Hardwood Forest Soil	VRRLAFLLAGLVLLAAGCGKGSSSGEAGRLVVAVDVPVT
Ga0310907_106280192	3300031847	Soil	VRRLVIFLAGVALLAAGCGGSTKSSSPKNLVIAVDVPVTGSPYIAQTIRQGV
Ga0308174_115689632	3300031939	Soil	VRRLAFLLAGLALLGAGCGGKSSSGAAGQLVIAVDVPVTGSPYAAQTIRQGVELAA
Ga0310890_101657921	3300032075	Soil	MGLALLAAGCGKSSSSSDLGHLTVAVDVPVTGSPYVAQTIRQGLELATANL
Ga0310895_104748142	3300032122	Soil	VRRLVILLAGVALLAAGCGGSSKSSSPKNLVIAVDVPVTGSP
Ga0307470_113785882	3300032174	Hardwood Forest Soil	VSRLALLLAGFALLAAGCGESSGGEATGKIVIAVDVPVTGSPYVAQTIRNGVQLAADNLN
Ga0310812_104128692	3300032421	Soil	VRRLAFLLAGLALLGAGCGGKSSSGTTGHLVIAVDVPVTGSPYVAQ
Ga0335085_112594161	3300032770	Soil	LLAGLAVLAAGCGKSTGSPPGKIVLAVDVPVTGSPYVAQTIRNGAGLAVDRLNGGGGITVGDRKYKI
Ga0247829_109187352	3300033550	Soil	VRRLAFLLAGLALIAAGCGKSSDADSPGRIVIAVDVPVTGSPYVAQTIKQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092558

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences