Metagenome / Metatranscriptome Family F092551

Overview

Basic Information

• Family ID: F092551
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 107
• Average Sequence Length: 57 residues
• Representative Sequence: WRVFATNFGVVPVAVVEPVLIAALLAGVLAAANLLAAVPALLAARSHPARLLRAE
• Number of Associated Samples: 95
• Number of Associated Scaffolds: 107

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 3.06 %
• % of genes near scaffold ends (potentially truncated): 86.92 %
• % of genes from short scaffolds (< 2000 bps): 83.18 %
• Associated GOLD sequencing projects: 91
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (75.701 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (18.692 % of family members)
• Environment Ontology (ENVO): Unclassified (32.710 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (51.402 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Transmembrane (alpha-helical)
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 49.40%
  β-sheet: 0.00%
  Coil/Unstructured: 50.60%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF08240	ADH_N	28.04
PF08002	DUF1697	7.48
PF03476	MOSC_N	4.67
PF00440	TetR_N	3.74
PF13546	DDE_5	2.80
PF04960	Glutaminase	1.87
PF08028	Acyl-CoA_dh_2	1.87
PF00753	Lactamase_B	1.87
PF02687	FtsX	1.87
PF01381	HTH_3	0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG3797	Uncharacterized conserved protein, DUF1697 family	Function unknown [S]	7.48
COG3217	N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain	Defense mechanisms [V]	4.67
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	1.87
COG2066	Glutaminase	Amino acid transport and metabolism [E]	1.87
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.93
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	0.93
COG2124	Cytochrome P450	Defense mechanisms [V]	0.93
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.93
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	0.93
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	0.93

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.70 %
Unclassified	root	N/A	24.30 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	75.70 %
Unclassified	root	N/A	24.30 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.70 %
Unclassified	root	N/A	24.30 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.74 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	40.19 %
Unclassified	root	N/A	24.30 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	38.32 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Unclassified	root	N/A	24.30 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	29.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.93 %
Unclassified	root	N/A	24.30 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.93 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.93 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.87 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.93 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.93 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.93 %
Unclassified	root	N/A	24.30 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.80 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	0.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.80 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.93 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.93 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	0.93 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.93 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.93 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.93 %
Unclassified	root	N/A	24.30 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.93 %

Level 9

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.80 %
Allosalinactinospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Allosalinactinospora	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.93 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.93 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.93 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.93 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.93 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.93 %
Unclassified	root	N/A	24.30 %
unclassified Acidimicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae	0.93 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidimicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	0.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.80 %
Allosalinactinospora lopnorensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Allosalinactinospora → Allosalinactinospora lopnorensis	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.93 %
Nocardioides guangzhouensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides guangzhouensis	0.93 %
Pseudonocardia acaciae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acaciae	0.93 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.93 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.93 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.93 %
Unclassified	root	N/A	24.30 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2170459018|G1P06HT01C2H2V	All Organisms → cellular organisms → Bacteria	515
3300000364|INPhiseqgaiiFebDRAFT_101219455	Not Available	604
3300001384|JGI20190J14840_1020557	Not Available	555
3300005093|Ga0062594_101188529	All Organisms → cellular organisms → Bacteria	754
3300005329|Ga0070683_100201160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1891
3300005331|Ga0070670_100255558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1527
3300005337|Ga0070682_100773851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	777
3300005406|Ga0070703_10063441	All Organisms → cellular organisms → Bacteria	1215
3300005434|Ga0070709_10241405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1297
3300005436|Ga0070713_100261237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1582

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	0.93%
Environmental	Environmental	84.11%
Host-Associated	Host-Associated	14.95%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	0.93%
Plants	Host-Associated → Plants	14.95%
Solid Waste	Engineered → Solid Waste	0.93%
Terrestrial	Environmental → Terrestrial	83.18%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Grass	Engineered → Solid Waste → Grass	0.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.35%
Soil	Environmental → Terrestrial → Soil	83.18%

Type

Habitat	Taxonomy	Distribution
Composting	Engineered → Solid Waste → Grass → Composting	0.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.67%
Loam	Environmental → Terrestrial → Soil → Loam	26.17%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.87%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.61%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.93%

Subtype

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	23.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.02%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.67%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.87%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.93%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.93%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.93%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	18.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.87%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.93%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	1.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.87%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.93%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.80%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.08%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2170459018	Litter degradation MG2	Engineered
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300001384	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 shallow-072012	Environmental
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2MG_01680760	2170459018	Switchgrass, Maize And Mischanthus Litter	FATNFGVVPVDVVEPVLIAALVXGVLAVANLLAAVPALLAARSQPARLLRAE
INPhiseqgaiiFebDRAFT_1012194552	3300000364	Soil	IGIAAGKVLWRVFATNFGVVPVEVVKPLLLTALVTGVLAAANVVATVPALLAARSHPGQLLRAE*
JGI20190J14840_10205571	3300001384	Arctic Peat Soil	TNFGVVPLTVVDALPVAALAFGVLAAANVLAFFPALLAARSRPAQLLRAE*
Ga0062594_1011885291	3300005093	Soil	LFASSFGVVPVPVVRPLLIVVLLAGVLAAANLLAAVPALLAARARPGPALRAE*
Ga0070683_1002011601	3300005329	Corn Rhizosphere	IATGKVFWRVFATNFGVVPVAVVEPVLIAALAVGVLAGANLLAAVPALLAARSQPARLLRAE*
Ga0070670_1002555582	3300005331	Switchgrass Rhizosphere	GIATGKVLWRVFATNFGVVPVAVVEPVLIAALAVGVLAGANLLAAVPALLAARSQPARLLRAE*
Ga0070682_1007738512	3300005337	Corn Rhizosphere	LWRVFATNFGVVPVPVTQPLLLTALTAGVLAAANLLAAVPALLAARSQPAQLLRAE*
Ga0070692_105959002	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	WRVFAVSFGVVAVPVLPPGLLAVLSGAVLVAANLLAAGPAIAAARARPGPVLRDL*
Ga0070703_100634411	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	ATNFGVVPVAVVEPVLIAALAVGVLAGANLLAAVPALLAARSQPARLLRAE*
Ga0070709_102414053	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LWRLFATSFGVVPVPVVRPLLIAVLLAGVLIAANLIAAVPAVLAARARPGPALRAE*
Ga0070713_1002612372	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	RVFATNFGVVPLTVVNVPLIATLAVGVLAAANVLAFFPALLASRSRPAQLLRAE*
Ga0070713_1011717432	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	SSFGVVPVPVVRPLLIVVLLAGVLAAANLLAAVPALLAARARPGPALRAE*
Ga0070713_1013869801	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	PLGIATGKVLWRVFATNFGVVPVAVVEPVLIAALAVGVLAGANLLAAVPALLAARSQPARLLRAE*
Ga0070710_106860542	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	GIATGKVLWRVFATNFGVVSVAVVEPVVIVALAAGVLAAANLLGAVPALLAARSHPARLLRAE*
Ga0070710_109322661	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	WRVFATNFGVVPVPVAEPLLLTVLVAGVLVAANMLAVVPALLAARCHPGHLLRTE*
Ga0070710_110554642	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	GKVLWRVFATNFGVVPVTVAEPVLIAVLAAGVLAAANLLAAVPALLAARSQPARLLRAE*
Ga0070711_1018643492	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	WRVFATNFGVVPVAVVEPVLIVVLAAGVLAAANLLAAIPALLAARSRSADLLRAE*
Ga0070694_1001485621	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	GIATGKVLWRVFATNFGVVPVAVVEPVLIVALAVGVLAGANLLAAVPALLAARSQPARLLRAE*
Ga0070678_1020668092	3300005456	Miscanthus Rhizosphere	AAGRALWRLFASSFGVVPVPVVRPLLIVVLLAGVLAAANLLAAVPALLAARARPGPALRAE*
Ga0070704_1008404732	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	FATNFGVVPVAVVEPVVIVALAAGVLAAANLLAAVPALLAARSQPARLLRAE*
Ga0068854_1022518532	3300005578	Corn Rhizosphere	TGKVLWRVFATNFGVVPVAVVEPVLIVALAVGVLAGANLLAAVPALLAARSQPARLLRAE
Ga0068863_1007817863	3300005841	Switchgrass Rhizosphere	FGVVPVPVTQPLLLTALTAGVLAAANLLAAVPALLAARSQPAQLLRAE*
Ga0081455_105608582	3300005937	Tabebuia Heterophylla Rhizosphere	TNFGVVPVAVVEPVLIAALAVGVLAAANLLAAVPALLAARSQPARLLRAE*
Ga0080026_100063672	3300005952	Permafrost Soil	VALVGIAVGAPIGIAAGKVLWRVFATNFGVVPVPVVQPLLIAALLTGVLATANMLAAVPALLAARSHPGQLLRAE*
Ga0070717_105881192	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VFATDFGVVPLTVVAALPIAALAFGVLAAANVLAFFPALLAARSRPAQLLRAE*
Ga0066652_1020877111	3300006046	Soil	PAGIAAGRVLWRVFATNFGVVPVPVVQPLVMVAMATGVLIAANALAAVPALLAAQSQPGQLLRTE*
Ga0070716_1018518032	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	GRVFWRVFATNFGVVPLTVVDALPVAALAFAVLAAANVLAFFPALLAARSRPAQLLRAE*
Ga0070712_1000113081	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VPVAEPLLLTVLVAGVLVAANMLAVVPALLAARCHPGHLLRTE*
Ga0070712_1001790971	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VFATNFGVVPLTVVDALPVAALAFAVLAAANVLAFFPALLAARSRPAQLLRAE*
Ga0070712_1003386841	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GVVPVPVVRPLLIVVLLAGVLAAANLLAAVPAVLAARARPGPALRAE*
Ga0074059_121187382	3300006578	Soil	FGVVPVPVVQPLLLAALATGVLAAANVLAAVPALLAARSHPGQLLRAE*
Ga0066659_109782551	3300006797	Soil	VLWRVFATNFGVVPVAVTEPVLIAVLAAGVLAGANLLAAVPALLAARSHPARLLRAE*
Ga0075434_1004660991	3300006871	Populus Rhizosphere	LWRLFATSFGVVPVPVVRPLLIIVLLAGVLAAANLLAAVPALLAARARPGPALRAE*
Ga0075436_1008390442	3300006914	Populus Rhizosphere	GVATGKVLWRVFATSFGVVPVAVVEPVLIAALAVGVLAGANLLAAVPALLAARSQPARLLRAE*
Ga0099827_115219011	3300009090	Vadose Zone Soil	LGIAAGKVLWRAFATNFGVVPFTVVQALPVAAIAVGVLAAANVLAFLPALLAARAHPAQLLRAE*
Ga0099827_115276161	3300009090	Vadose Zone Soil	TVCWQATTVALAGVAVGVPIGIAAGKVLWRVFATNFGVVPVEVVKPLLLAALVTGVLAAANVVATVPALLAARSHPGQLLRAE*
Ga0105241_112409702	3300009174	Corn Rhizosphere	VFATNFGVVPLTVVEALPVAALAFGVLAAANVLAFFPALLAARSRPAQLLRAE*
Ga0105242_103346341	3300009176	Miscanthus Rhizosphere	VVPLTVVEALPVAALAFGVLAAANVLAFFPALLAARSRPAQLLRAE*
Ga0105248_107790542	3300009177	Switchgrass Rhizosphere	GVVPLTVVEALPVAALAFGVLAAANVLAFFPALLAARSRPAQLLRAE*
Ga0126384_113710631	3300010046	Tropical Forest Soil	AGRVLWRVFATNFGVVPVDVVEPVLIAALVAGVLAVANLLAAVPALLAARSQPARLLRAE
Ga0134109_100820441	3300010320	Grasslands Soil	KVLWRAFATNFGVVPVAVTEPVLIAALAVGVLAAANLLAAVPALLAARSQPARLLRAE*
Ga0126378_126943712	3300010361	Tropical Forest Soil	WWLFATSFGVVPVPVARPLLIVVLLAGVLAAANLLAAVPALLAARARPGPALRAE*
Ga0126377_114961292	3300010362	Tropical Forest Soil	WRLFATSFGVVPVPVIRPLLVVVLLAGVLAAANLLAAVPALLSARARPGPALRAE*
Ga0105239_129561202	3300010375	Corn Rhizosphere	VWRVFATNFGVVPLTVVNVPLIATLAVGVLAAANVLAFFPALLASRSRPAQLLRAE*
Ga0134126_117741221	3300010396	Terrestrial Soil	GIATGKVLWRVFATNFGVVPVAVVEPVLIAALAVGVLAAANLLAAVPALLAARSQPARLLRAE*
Ga0134127_105902733	3300010399	Terrestrial Soil	FASSFGVVPVPVVRPLLIVVLLAGVLAAANLLAAVPALLAARARPGPALRAE*
Ga0126356_104635592	3300010877	Boreal Forest Soil	GRVLWRVFATNFGVVPVAVVEPVLIVALAAGVLAVANLLAAVPALLAARSRPAQLLRAE*
Ga0137365_101290541	3300012201	Vadose Zone Soil	GIAAGRVLWRVFATNFGVVPVPVVEPLLLAALVAGVLAAANVLAAVPALLAARSHPGQLLRAE*
Ga0137381_103164193	3300012207	Vadose Zone Soil	VFWRVFATNFGVVPVAVADPLLLAALVTGVLAAANVLAGVPAVLAARSHPGELLRTG*
Ga0137381_109839771	3300012207	Vadose Zone Soil	VALVGIAVGLPIGIAVGKVLWRAFAANFGVVPVAVAHPLPLAALVVGVLAAANVLAAFPALLAARSHPGQVLRRE*
Ga0137376_105149091	3300012208	Vadose Zone Soil	FGVVPVDVVEPVLIAALAVGVLAVANALAAVPALLAARSQPARLLRAE*
Ga0137378_110314082	3300012210	Vadose Zone Soil	VVPVAVVHPLPLAALVVGVLAAANALAVVPALLAARSHSGQLLRAE*
Ga0137378_114323102	3300012210	Vadose Zone Soil	LWRIFATDFGVVPVDVVEPVLIAALAVGVLAVANALAAVPALLAARSQPARLLRAE*
Ga0137387_102390471	3300012349	Vadose Zone Soil	AVVPVAVVQPLSLVALVAGVLAAANLLAAIPALLAARSHPGQLLRTE*
Ga0137372_104678413	3300012350	Vadose Zone Soil	RVFASEVGVVAVTVVPVTALAALAGGVLVAANLLAIIPAWLAARSRPAQLLRAE*
Ga0137366_100084021	3300012354	Vadose Zone Soil	GKVAWRLFATNFGVVPVAVVQAVPLVLLAATALAAANLLAVLPALLAGRARPADLLRAE*
Ga0137385_100452846	3300012359	Vadose Zone Soil	GRVLWRVFATNFGVVPVPVVQPLLLAVLAAGVLAAANVLAAVPALMAARSHPGQLLRAE*
Ga0137385_108057222	3300012359	Vadose Zone Soil	GVVPVEVVEPLLLAALVTGVLAAANVVAAIPALLAARSHPAELLRTE*
Ga0137410_118824782	3300012944	Vadose Zone Soil	LWRVFATNFGVVPVAVVEPVVIVALAAGVLAAANLLAAVPALLAARSHPARLLRAE*
Ga0164298_107576712	3300012955	Soil	NFGVVPVAVVEPVLIVALVAGVLAVANLLAAAPALLAARSDPARLLRAE*
Ga0164309_101851771	3300012984	Soil	TGKVLWRVFATNFGVVPVAVVEPVLIAALVAGVLAAANLLAAVPALLAARSHPARLLRAE
Ga0157369_108672872	3300013105	Corn Rhizosphere	GVVPVAVVEPVVIVALAAGVLAVANLLAAVPALLAARSHPARLLRAE*
Ga0157378_128699082	3300013297	Miscanthus Rhizosphere	VPLGIAAGRVVWRVFATNFGVVPLTVVNVPLIATLAVGVLAAANVLAFFRALLASRSRPAQLLRAE*
Ga0182001_106663352	3300014488	Soil	ATNFGVVPVAVVPAVLIGVLAAGVLVAANVLAAVPALLAARVRPARLLRNE*
Ga0120104_10520901	3300014829	Permafrost	GIAAGRVLWRVFATNFGVVPLTVVEVLPVAALALGVLVAANVLAFVPALLAARSRPAELLRAE*
Ga0182040_118255661	3300016387	Soil	AWRLFATNLGVVPVPVVPAEVLAALACGVLVAANALAAIPAWLAARSRPAQLLRAE
Ga0182040_118534862	3300016387	Soil	GRVLWRVFATNFGVVPLTVVEALPAAALAFGVLAAANVLAFFPALLAARSRPAQLLRAE
Ga0163161_115729412	3300017792	Switchgrass Rhizosphere	WRVFATNFGVVPVAVVEPVVIVALAAGVLAAANLLAAVPALLAARSQPARLLRAE
Ga0187820_12903751	3300017924	Freshwater Sediment	VLWRVFATNFGVVPVPVVEPVLIIVLVAGVLAVANLLAAAPALLAARSDPARLLRAE
Ga0066667_104268163	3300018433	Grasslands Soil	WRVFATNFGVVPVPVVQPLVMVAMATGVLIAANALAAVPALLAAQSQPGQLLRTE
Ga0193723_10075766	3300019879	Soil	IATGKVLWRVFATNFGVVPVAVVEPVLIAALLAGVLAAANLLAAVPALLAARSHPARLLRAE
Ga0210388_109267012	3300021181	Soil	VAAGRVLWRVFATNFGVVPVPVVPVLLLAALAAGVLAGANVLAAGPALVAARSHPGQLLRSE
Ga0193699_102926871	3300021363	Soil	RVLWRVFATNFGVVPVAVVEPVLIAALAVGVLAGANLLAAVPALLAARSQPARLLRAE
Ga0210387_117559641	3300021405	Soil	ATGKVLWRVFATNFGVVPVAVVEPVLIAALAVGVLAGANLLAAVPALLAARSQPARLLRA
Ga0182009_101550812	3300021445	Soil	LWRVFATNFGVVPVDVVEPVLIAALVAGVVAVANLLAAVPALLAARSQPARLLRAE
Ga0210402_109207702	3300021478	Soil	ALWRLFATSFGVVPVPVVRPLLIVVLLAGVLAAANLLAAVPAVLAARARPGPALRAE
Ga0247794_100572662	3300024055	Soil	GVAAGRVLWRVFATNFGVVPVDVVEPVLIAALVAGVLAVANLLAAVPALLAARSQPARLLRAE
Ga0207693_100224725	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	FATNFGVVPLTVVDALPVAALAFAVLAAANVLAFFPALLAARSRPAQLLRAE
Ga0207663_101849273	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	AAGRVFWRVFATNFGVVPLTVVDALPVAALAFAVLAAANVLAFFPALLAARSRPAQLLRA
Ga0207652_110197212	3300025921	Corn Rhizosphere	AGRALWRLFASSFGVVPVPVVRPLLIVVLLAGVLAAANLLAAVPALLAARARPGPALRAE
Ga0207646_100535071	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	SFGVVPVPVVRPLLIVVLLAGVLAAANLLAAVPALLAARARPGPALRAE
Ga0207664_119656941	3300025929	Agricultural Soil	FGVVPVAVVEPVLIVVLAAGVLAAANLLAAIPALLAARSRSADLLRAE
Ga0207670_104411771	3300025936	Switchgrass Rhizosphere	GKVFWRVFATNFGVVPVAVVEPVLIAALAVGVLAGANLLAAVPALLAARSQPARLLRAE
Ga0207641_110786552	3300026088	Switchgrass Rhizosphere	RVFATNFGVVPVPVTQPLLLTALTAGVLAAANLLAAVPALLAARSQPAQLLRAE
Ga0209871_10047692	3300026217	Permafrost Soil	VALVGIAVGAPIGIAAGKVLWRVFATNFGVVPVPVVQPLLIAALLTGVLATANMLAAVPALLAARSHPGQLLRAE
Ga0209474_105725331	3300026550	Soil	NFGVVPVDVVEPVLIAALVAGVLAVANLLAAVPALLAARSQPARLLRAE
Ga0209326_10002871	3300026899	Forest Soil	NFGVVPVAVVEPVLIAALAVGVLAGANLLAAVPALLAARSQPARLLRAE
Ga0209522_10359761	3300027119	Forest Soil	GRVLWRVFATNFGVVPVAVVEPVLIAALAVGVLAGANLLAAVPALLAARSQPARLLRAE
Ga0209177_104555881	3300027775	Agricultural Soil	FGVVPVPVVSPLLVVILLAGVLAAANLLAAVPALLAARARPGPALRAE
Ga0209169_105097461	3300027879	Soil	GRVLWRVFATNFGVVPVPVVPLLTLTALAVGVLAAANVLAAVPALTAARSRPGQLPRAE
Ga0307316_103673351	3300028755	Soil	WRVFATNFGVVPVAVVEPVLIAALLAGVLAAANLLAAVPALLAARSHPARLLRAE
Ga0307304_100048441	3300028885	Soil	ATNFGVVPVAVVEPVLIAALLAGVLAAANLLAAVPALLAARSHPARLLRAE
Ga0318493_100084441	3300031723	Soil	GIAAGRVFWRVFATNFGVVPLTVVEALPVAALAFGVLAAANVLAFFPALLAARSRPAQLLRAE
Ga0318500_101161251	3300031724	Soil	RVFATNFGVVPLTVVEALPVAALAFGVLAAANVLAFFPALLAARSRPAQLLRAE
Ga0318557_101763662	3300031795	Soil	AGRVLWRVFATNFGVVPLTVVEALPVAALAFAVLAAANVLAFFPALLAARSRPAQLLRAE
Ga0306923_113682521	3300031910	Soil	GIAAGRVLWRVFATNFGVVPLTVVEALPVAALAFAVLAAANVLAFFPALLAARSRPAQLLRAE
Ga0318507_101339462	3300032025	Soil	AGRVFWRVFATNFGVVPLTVVEALPVAALAFGVLAAANVLAFFPALLAARSRPAQLLRAE
Ga0318559_102158452	3300032039	Soil	IAAGRVLWRVFATNFGVVPLTVVEALPVAALAFGVLAAANVLAFFPALLAARSRPAQLLRAE
Ga0318549_101207402	3300032041	Soil	VPLGIAAGRVFWRVFATNFGVVPLTVVEALPVAALAFGVLAAANVLAFFPALLAARSRPAQLLRAE
Ga0307471_1033843902	3300032180	Hardwood Forest Soil	LWRLFATSFGVVPVPVVRPLLIAVLLAGVLAAANLLAAVPALLAARARPGPALRAE
Ga0307471_1038354061	3300032180	Hardwood Forest Soil	FATNFGVVPLTVVNVPLIATLAVGVLAAANVLAFFPALLASRSRPAQLLRAE
Ga0306920_1002436931	3300032261	Soil	RVLWRVFATNFGVVPLTVVEALPVAALAFAVLAAANVLAFFPALLAARSRPAQLLRAE
Ga0335079_110460411	3300032783	Soil	WRTFATTFGVVPVPVVQPWPLAALAVAVLAAANLLAVGPALLATRSRPAELLRAD
Ga0335080_110811751	3300032828	Soil	PLGIAAGRVLWRVFATNFGVVPLTVVEALPMAVLVFGVLAAANVLAFFPALLAARSRPAQLLRAE
Ga0335072_110802111	3300032898	Soil	RLFATNFGVVPLTVVTVLPLAALALGVLAAANVLAFVPALLAARSRPARLLRAE
Ga0335084_120303272	3300033004	Soil	AFATNFGVVPVAVVEPVLIAALAAGVLAVANLLAAVPALLAARSDPARLLRAE
Ga0373958_0173090_13_183	3300034819	Rhizosphere Soil	LWRVFATNFGVVPLTVVEALPVAALAFGVLAAANVLAFFPALLAARSRPAQLLRAE